RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy317
(137 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 60.6 bits (147), Expect = 1e-12
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
+ + L ++E + LSGGQ++R+++A +V P ++ DEP S L
Sbjct: 117 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 171
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 59.9 bits (145), Expect = 2e-12
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFT 103
+ E+ + LGL E LSGGQ++R+++ +V P + DEP S L
Sbjct: 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 59.1 bits (143), Expect = 3e-12
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
++E+L +GL + + SNLSGGQK+R++IA L +NP ++ DE TS L
Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 56.4 bits (136), Expect = 3e-11
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 49 EILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
E L L+E + LSGGQ++R++IA L NNPPI+ D+PT L
Sbjct: 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 55.4 bits (133), Expect = 9e-11
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+IL+ L L LSGGQ K + I L+ NP ++ DEP + +
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 54.4 bits (131), Expect = 2e-10
Identities = 22/44 (50%), Positives = 25/44 (56%)
Query: 55 GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
G LSGGQK+RLSIA +NNPPI+ DE TS L
Sbjct: 143 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 52.5 bits (126), Expect = 8e-10
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 55 GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
GL LSGGQ++R++IA L+ + PI+ DE TS L
Sbjct: 141 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 183
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 51.8 bits (124), Expect = 1e-09
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 47 ISEILDTL-GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
+ I L+E + LSGG+++ L+I L++ P ++ DEP+ L
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 51.1 bits (122), Expect = 3e-09
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY 106
++++ + L L LSGGQ++R++I LV P + DEP S L A
Sbjct: 111 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 107 E 107
Sbjct: 171 I 171
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 50.4 bits (120), Expect = 6e-09
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+ + GL E S S G ++L IA L+ NP + DEPTS
Sbjct: 114 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 162
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 50.2 bits (120), Expect = 7e-09
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 49 EILDTLGLQEH-KTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAE 101
+ L +G+ E + +LSGGQ++R+SIA L P ++ FDEPTS L
Sbjct: 131 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPEL 184
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 49.9 bits (119), Expect = 7e-09
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLH 98
+SGGQ++RL+IA + NP I+ DE T+ L
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 48.0 bits (114), Expect = 5e-08
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 55 GLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
LSGGQ+ R+S+A + + + D P L
Sbjct: 147 QDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 45.7 bits (108), Expect = 2e-07
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 54 LGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
G + LSGGQ++R++IA LVNNP I+ FDE TS L
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 45.3 bits (107), Expect = 3e-07
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 31 MVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFF 90
+ A + I + L+++ + + K + LS G +R+ +A L+ N I
Sbjct: 91 LKAVASLYGVKVNKNEIMDALESVEVLDLKKKL-GELSQGTIRRVQLASTLLVNAEIYVL 149
Query: 91 DEPTSPL 97
D+P +
Sbjct: 150 DDPVVAI 156
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 45.3 bits (107), Expect = 4e-07
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 65 SNLSGGQKKRLSIALELVNNPPIMFFDEPTSPL 97
S LSGGQ++ +++A L+ P ++ D+ TS L
Sbjct: 150 SQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 42.6 bits (100), Expect = 3e-06
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 49 EILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVN-------NPPIMFFDEPTSPLHKAE 101
++ L L + T+ LSGG+ +R+ +A ++ ++ DEP + L A+
Sbjct: 108 DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ 167
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 39.3 bits (91), Expect = 4e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTS 95
+ E+ L + LSG Q++R+++A LV +P ++ DEP S
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFS 169
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 38.1 bits (88), Expect = 1e-04
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 47 ISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALELVNNPPIMFFDEPTSPLHKAEFTPKY 106
+ + L ++ LSGG+++R+++A LV NP I+ DEP S L
Sbjct: 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 107 E 107
E
Sbjct: 168 E 168
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 37.3 bits (86), Expect = 2e-04
Identities = 17/78 (21%), Positives = 33/78 (42%)
Query: 21 LTRMQISNGMMVLAAMFNQSQAGSCFISEILDTLGLQEHKTTMTSNLSGGQKKRLSIALE 80
L + + + E+ + LG+ + LSGG+++R+++A
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140
Query: 81 LVNNPPIMFFDEPTSPLH 98
LV P ++ DEP S +
Sbjct: 141 LVIQPRLLLLDEPLSAVD 158
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 36.0 bits (81), Expect = 7e-04
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 58 EHKTTMTSNLSGGQKKR------LSIALELVNNPPIMFFDEPTSPLH 98
E K + LSGG++ L+++L L ++ DEPT L
Sbjct: 270 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLD 316
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.7 bits (65), Expect = 0.084
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 56 LQEHKTTMTSNLSGGQKKRL------SIALELVNNPPIMFFDEPTSPLHKA 100
+ E K + LSGG++ L +++L L ++ DEPT L +
Sbjct: 191 VWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEE 241
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 29.7 bits (65), Expect = 0.11
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 57 QEHKTTMTSNLSGGQKKRLSIALEL----VNNPPIMFFDEPTSPLHKA 100
+ LSGG+K ++AL P DE + L
Sbjct: 323 PLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDIT 370
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.367
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,584
Number of extensions: 17387
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 24
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.3 bits)