BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3170
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 16/214 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITS-PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY-T 338
CGGSLI +V+TAAHC PL + G++ + ++ + I+H NY
Sbjct: 28 LCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIHQNYKV 87
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYFDTKESL 396
+EG HDIAL+K+ P+E++E KP L + + +G+G + K +
Sbjct: 88 SEGN---HDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWG---FSKEKGEI 141
Query: 397 R--LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
+ L KV + ++ N+ C K Q+ + +CA GGKD C+GDSGGPL + M
Sbjct: 142 QNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPL--VCKHNGM 199
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVH 486
+ ++GITS+G C P +YT+V+ Y+ WI+
Sbjct: 200 WRLVGITSWGEGCARREQPGVYTKVAEYMDWILE 233
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 6 AAHCITS-PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY-TTEGTSQYHDIALLK 63
AAHC PL + G++ + ++ + I+H NY +EG HDIAL+K
Sbjct: 42 AAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEIIIHQNYKVSEGN---HDIALIK 98
Query: 64 IAPPVEFSETLKPACL 79
+ P+E++E KP L
Sbjct: 99 LQAPLEYTEFQKPISL 114
>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant
Length = 247
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 43 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 97
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + V +G+G+ T + L
Sbjct: 98 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 153
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
M+ L +I N C++ E + S++LCA +AGG D+CQGDSGGPL D Y +
Sbjct: 154 MEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 211
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 43 FCGGTLISPEWVLTAAHCL 61
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 57 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 109
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 110 SPAVITDKVIPACL 123
>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional
Structure Of The Catalytic Domain Of Human Plasma
Kallikrein: Implications For Structure-Based Design Of
Protease Inhibitors
Length = 241
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 16/214 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITS-PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY-T 338
CGGSLI +V+TAAHC PL + G++ + ++ + I+H NY
Sbjct: 28 LCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILNLSDITKDTPFSQIKEIIIHQNYKV 87
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYFDTKESL 396
+EG HDIAL+K+ P+ ++E KP L + + +G+G + K +
Sbjct: 88 SEGN---HDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVTGWG---FSKEKGEI 141
Query: 397 R--LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
+ L KV + ++ N+ C K Q+ + +CA GGKD C+GDSGGPL + M
Sbjct: 142 QNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDSGGPL--VCKHNGM 199
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVH 486
+ ++GITS+G C P +YT+V+ Y+ WI+
Sbjct: 200 WRLVGITSWGEGCARREQPGVYTKVAEYMDWILE 233
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 6 AAHCITS-PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY-TTEGTSQYHDIALLK 63
AAHC PL + G++ + ++ + I+H NY +EG HDIAL+K
Sbjct: 42 AAHCFDGLPLQDVWRIYSGILNLSDITKDTPFSQIKEIIIHQNYKVSEGN---HDIALIK 98
Query: 64 IAPPVEFSETLKPACL 79
+ P+ ++E KP L
Sbjct: 99 LQAPLNYTEFQKPISL 114
>pdb|1BUI|A Chain A, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
pdb|1BUI|B Chain B, Structure Of The Ternary
Microplasmin-Staphylokinase-Microplasmin Complex: A
Proteinase-Cofactor-Substrate Complex In Action
Length = 250
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 46 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 100
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + V +G+G+ T + L
Sbjct: 101 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 156
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +I N C++ E + S++LCA +AGG D+CQGDSGGPL D Y +
Sbjct: 157 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 214
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 215 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 243
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 46 FCGGTLISPEWVLTAAHCL 64
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 60 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 112
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 113 SPAVITDKVIPACL 126
>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex
pdb|3UIR|B Chain B, Crystal Structure Of The Plasmin-Textilinin-1 Complex
Length = 247
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 43 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 97
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + V +G+G+ T + L
Sbjct: 98 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 153
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +I N C++ E + S++LCA +AGG D+CQGDSGGPL D Y +
Sbjct: 154 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 211
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 43 FCGGTLISPEWVLTAAHCL 61
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 57 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 109
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 110 SPAVITDKVIPACL 123
>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha
Domain Complex
Length = 249
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 45 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 99
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + V +G+G+ T + L
Sbjct: 100 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 155
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +I N C++ E + S++LCA +AGG D+CQGD+GGPL D Y +
Sbjct: 156 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD--KYIL 213
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 214 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 242
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 45 FCGGTLISPEWVLTAAHCL 63
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 59 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 111
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 112 SPAVITDKVIPACL 125
>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|B Chain B, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|C Chain C, Crystal Structure Of Human Plasminogen Catalytic Domain
pdb|1DDJ|D Chain D, Crystal Structure Of Human Plasminogen Catalytic Domain
Length = 247
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 43 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 97
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + V +G+G+ T + L
Sbjct: 98 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 153
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +I N C++ E + S++LCA +AGG D+CQGD+GGPL D Y +
Sbjct: 154 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD--KYIL 211
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 212 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 240
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 43 FCGGTLISPEWVLTAAHCL 61
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 57 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 109
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 110 SPAVITDKVIPACL 123
>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
pdb|1BML|B Chain B, Complex Of The Catalytic Domain Of Human Plasmin And
Streptokinase
Length = 250
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 46 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 100
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + V +G+G+ T + L
Sbjct: 101 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 156
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +I N C++ E + S++LCA +AGG D+CQGD+GGPL D Y +
Sbjct: 157 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD--KYIL 214
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 215 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 243
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 46 FCGGTLISPEWVLTAAHCL 64
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 60 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 112
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 113 SPAVITDKVIPACL 126
>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen
With Alpha Domain Of Streptokinase In The Presence
Cadmium Ions
Length = 248
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 44 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 98
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + V +G+G+ T + L
Sbjct: 99 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 154
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +I N C++ E + S++LCA +AGG D+CQGD+GGPL D Y +
Sbjct: 155 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKD--KYIL 212
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 213 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 241
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 44 FCGGTLISPEWVLTAAHCL 62
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 58 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 110
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 111 SPAVITDKVIPACL 124
>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen
pdb|1QRZ|B Chain B, Catalytic Domain Of Plasminogen
pdb|1QRZ|C Chain C, Catalytic Domain Of Plasminogen
pdb|1QRZ|D Chain D, Catalytic Domain Of Plasminogen
Length = 246
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 42 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 96
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + + +G+G+ T + L
Sbjct: 97 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYMVADRTECFITGWGETQ--GTFGAGLL 152
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +I N C++ E + S++LCA +AGG D+CQGDSGGPL D Y +
Sbjct: 153 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 210
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 211 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 239
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 42 FCGGTLISPEWVLTAAHCL 60
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 56 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 108
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 109 SPAVITDKVIPACL 122
>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin
pdb|3DFL|A Chain A, Crystal Structure Of Human Prostasin Complexed To 4-
Guanidinobenzoic Acid
Length = 263
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 114/223 (51%), Gaps = 23/223 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGGSL+S +V++AAHC S K Y V+ G SYS + + I HP+Y E
Sbjct: 26 CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQE 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLN---YFDTKE 394
G+ DIALL+++ P+ FS ++P L A N P + +G+G + T +
Sbjct: 86 GSQG--DIALLQLSRPITFSRYIRPISLPAA-NASFPNGLHCTVTGWGHVAPSVSLLTPK 142
Query: 395 SLRLMKVVLDIINNDTCSK--------QETTLISSQL-CATVMAGGKDTCQGDSGGPLQT 445
L+ ++V L I+ +TC+ +E + + CA + GGKD CQGDSGGPL
Sbjct: 143 PLQQLEVPL--ISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSC 200
Query: 446 IMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
P ++ + GI S+G CG N P +YT S Y WI V
Sbjct: 201 --PVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV 241
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 6 AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
AAHC S K Y V+ G SYS + + I HP+Y EG+ DIALL++
Sbjct: 39 AAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQG--DIALLQL 96
Query: 65 APPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKL 98
+ P+ FS ++P L A N P + +G+G +
Sbjct: 97 SRPITFSRYIRPISLPAA-NASFPNGLHCTVTGWGHV 132
>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
Plasminogen
pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
Plasminogen
pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
Length = 791
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LISP +V+TAAHC+ PR + +I V N+ +Q I E
Sbjct: 587 FCGGTLISPEWVLTAAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLE 641
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLRL 398
T + DIALLK++ P ++ + PACL + V +G+G+ T + L
Sbjct: 642 PTRK--DIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ--GTFGAGLL 697
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +I N C++ E + S++LCA +AGG D+CQGDSGGPL D Y +
Sbjct: 698 KEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKD--KYIL 755
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
G+TS+G C N P +Y RVS +V WI
Sbjct: 756 QGVTSWGLGCARPNKPGVYVRVSRFVTWI 784
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FCGG+LISP +V+TAAHC+
Sbjct: 587 FCGGTLISPEWVLTAAHCL 605
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ PR + +I V N+ +Q I E T + DIALLK++
Sbjct: 601 AAHCLEK---SPRPSSYKVILGAHQEV--NLEPHVQEIEVSRLFLEPTRK--DIALLKLS 653
Query: 66 PPVEFSETLKPACL 79
P ++ + PACL
Sbjct: 654 SPAVITDKVIPACL 667
>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAW|C Chain C, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti
(Aprotinin) Complex
pdb|1EAX|A Chain A, Crystal Structure Of Mtsp1 (Matriptase)
pdb|2GV6|A Chain A, Crystal Structure Of Matriptase With Inhibitor Cj-730
pdb|2GV7|A Chain A, Structure Of Matriptase In Complex With Inhibitor Cj-672
Length = 241
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 112/212 (52%), Gaps = 12/212 (5%)
Query: 282 CGGSLISPNYVMTAAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHP 335
CG SLISPN++++AAHC G ++ F GL + S R ++ I+
Sbjct: 27 CGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISH 86
Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTK 393
+ + T Y DIALL++ P E+S ++P CL + +H + AI +G+G Y T
Sbjct: 87 PFFNDFTFDY-DIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTG 145
Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
+L L K + +IN TC I+ ++ C ++GG D+CQGDSGGPL ++ D +
Sbjct: 146 -ALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI 204
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ G+ S+G C N P +YTR+ + WI
Sbjct: 205 FQ-AGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
++GG+ A GE+P Q + + +G CG SLISPN++++AAHC
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGH-------ICGASLISPNWLVSAAHC 43
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 6 AAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDI 59
AAHC G ++ F GL + S R ++ I+ + + T Y DI
Sbjct: 40 AAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDY-DI 98
Query: 60 ALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNY 100
ALL++ P E+S ++P CL + +H + AI +G+G Y
Sbjct: 99 ALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY 141
>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In
Complex With A Calcium Ion.
pdb|3GYM|A Chain A, Structure Of Prostasin In Complex With Aprotinin
pdb|3GYM|B Chain B, Structure Of Prostasin In Complex With Aprotinin
Length = 261
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 23/223 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGGSL+S +V++AAHC S K Y V+ G SYS + + I HP+Y E
Sbjct: 26 CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQE 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLN---YFDTKE 394
G+ DIALL+++ P+ FS ++P L A P + +G+G + T +
Sbjct: 86 GSQG--DIALLQLSRPITFSRYIRPISLPAA-QASFPNGLHCTVTGWGHVAPSVSLLTPK 142
Query: 395 SLRLMKVVLDIINNDTCSK--------QETTLISSQL-CATVMAGGKDTCQGDSGGPLQT 445
L+ ++V L I+ +TC+ +E + + CA + GGKD CQGDSGGPL
Sbjct: 143 PLQQLEVPL--ISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSC 200
Query: 446 IMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
P ++ + GI S+G CG N P +YT S Y WI V
Sbjct: 201 --PVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 6 AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
AAHC S K Y V+ G SYS + + I HP+Y EG+ DIALL++
Sbjct: 39 AAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQG--DIALLQL 96
Query: 65 APPVEFSETLKPACLNRAH 83
+ P+ FS ++P L A
Sbjct: 97 SRPITFSRYIRPISLPAAQ 115
>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A
Covalent Benzoxazole Inhibitor
pdb|3E16|B Chain B, X-Ray Structure Of Human Prostasin In Complex With
Benzoxazole Warhead Peptidomimic, Lysine In P3
pdb|3E1X|B Chain B, The Crystal Structure Of Apo Prostasin At 1.7 Angstroms
Resolution
pdb|3FVF|B Chain B, The Crystal Structure Of Prostasin Complexed With Camostat
At 1.6 Angstroms Resolution
pdb|3E0N|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With
Dffr- Chloromethyl Ketone Inhibitor
Length = 271
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 113/223 (50%), Gaps = 23/223 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGGSL+S +V++AAHC S K Y V+ G SYS + + I HP+Y E
Sbjct: 26 CGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQE 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI---ASGFGKLN---YFDTKE 394
G+ DIALL+++ P+ FS ++P L A P + +G+G + T +
Sbjct: 86 GSQG--DIALLQLSRPITFSRYIRPISLPAA-QASFPNGLHCTVTGWGHVAPSVSLLTPK 142
Query: 395 SLRLMKVVLDIINNDTCSK--------QETTLISSQL-CATVMAGGKDTCQGDSGGPLQT 445
L+ ++V L I+ +TC+ +E + + CA + GGKD CQGDSGGPL
Sbjct: 143 PLQQLEVPL--ISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSC 200
Query: 446 IMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
P ++ + GI S+G CG N P +YT S Y WI V
Sbjct: 201 --PVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKV 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 6 AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
AAHC S K Y V+ G SYS + + I HP+Y EG+ DIALL++
Sbjct: 39 AAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHPSYLQEGSQG--DIALLQL 96
Query: 65 APPVEFSETLKPACLNRAH 83
+ P+ FS ++P L A
Sbjct: 97 SRPITFSRYIRPISLPAAQ 115
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSLISP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ CL +N + +GFGK N
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ CL +N + +GFGK N
Sbjct: 104 RSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEN 144
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSL+SP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 50 VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 109
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ CL +N + +GFGK N
Sbjct: 110 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 169
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 170 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 229
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 230 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 264
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 67 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 126
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ CL +N + +GFGK N
Sbjct: 127 RSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEN 167
>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine
pdb|3P8F|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Sfti-1
Length = 241
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 282 CGGSLISPNYVMTAAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHP 335
CG SLISPN++++AAHC G ++ F GL + S R ++ I+
Sbjct: 27 CGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISH 86
Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTK 393
+ + T Y DIALL++ P E+S ++P CL + +H + AI +G+G Y T
Sbjct: 87 PFFNDFTFDY-DIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTG 145
Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
+L L K + +I TC I+ ++ C ++GG D+CQGDSGGPL ++ D +
Sbjct: 146 -ALILQKGEIRVIQQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI 204
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ G+ S+G C N P +YTR+ + WI
Sbjct: 205 FQ-AGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
++GG+ A GE+P Q + + +G CG SLISPN++++AAHC
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGH-------ICGASLISPNWLVSAAHC 43
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 6 AAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDI 59
AAHC G ++ F GL + S R ++ I+ + + T Y DI
Sbjct: 40 AAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDY-DI 98
Query: 60 ALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNY 100
ALL++ P E+S ++P CL + +H + AI +G+G Y
Sbjct: 99 ALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQY 141
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSL+SP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ CL +N + +GFGK N
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ CL +N + +GFGK N
Sbjct: 104 RSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEN 144
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P CL NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P CL NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSL+SP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ CL +N + +GFGK N
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ CL +N + +GFGK N
Sbjct: 104 RSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEN 144
>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex
Length = 254
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 13/222 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTAAEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
+ GI S+G C IYT+V+ ++ WI ++ P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKA 240
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQ--AKRFKVRVGDRNTAAEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P CL NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P CL NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P CL NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P CL NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
pdb|3KL6|A Chain A, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative
Tak-44 Potent, Selective And Orally Active Factor Xa
Inhibitor
pdb|2XBW|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
+ GI S+G C IYT+V+ ++ WI ++ P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAK 241
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P CL NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWGYRALRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFG 96
+ V ++++ +P CL NV +G+G
Sbjct: 99 LETTVNYADSQRPICLPSKGDRNVIYTDCWVTGWG 133
>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3BN9|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor
E2
pdb|3NCL|A Chain A, Crystal Structure Of Mt-Sp1 Bound To Benzamidine
Phosphonate Inhibitor
pdb|3NPS|A Chain A, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
pdb|3SO3|A Chain A, Structures Of Fab-Protease Complexes Reveal A Highly
Specific Non- Canonical Mechanism Of Inhibition
Length = 241
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 12/212 (5%)
Query: 282 CGGSLISPNYVMTAAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHP 335
CG SLISPN++++AAHC G ++ F GL + S R ++ I+
Sbjct: 27 CGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISH 86
Query: 336 NYTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTK 393
+ + T Y DIALL++ P E+S ++P L + +H + AI +G+G Y T
Sbjct: 87 PFFNDFTFDY-DIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTG 145
Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCM 452
+L L K + +IN TC I+ ++ C ++GG D+CQGDSGGPL ++ D +
Sbjct: 146 -ALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI 204
Query: 453 YNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ G+ S+G C N P +YTR+ + WI
Sbjct: 205 FQ-AGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 7/50 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
++GG+ A GE+P Q + + +G CG SLISPN++++AAHC
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGH-------ICGASLISPNWLVSAAHC 43
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 6 AAHCITSPLG-----KPRYVRF-GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDI 59
AAHC G ++ F GL + S R ++ I+ + + T Y DI
Sbjct: 40 AAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDY-DI 98
Query: 60 ALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKLNY 100
ALL++ P E+S ++P L + +H + AI +G+G Y
Sbjct: 99 ALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQY 141
>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFU|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
pdb|1NFW|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|B Chain B, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|B Chain B, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|B Chain B, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|B Chain B, Crystal Structure Of Fxa In Complex With 45.
pdb|1P0S|H Chain H, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|2BOH|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|A Chain A, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|A Chain A, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|A Chain A, Factor Xa Inhibitor Complex
pdb|2VH0|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|A Chain A, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|A Chain A, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|4A7I|B Chain B, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 254
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
+ GI S+G C IYT+V+ ++ WI ++ P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKA 240
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
Length = 255
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 13/222 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
+ GI S+G C IYT+V+ ++ WI ++ P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKA 240
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|D Chain D, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1G2L|A Chain A, Factor Xa Inhibitor Complex
pdb|1G2M|A Chain A, Factor Xa Inhibitor Complex
pdb|1IOE|A Chain A, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|A Chain A, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|A Chain A, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|A Chain A, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|A Chain A, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|A Chain A, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|A Chain A, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|A Chain A, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|A Chain A, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|A Chain A, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|A Chain A, Human Coagulation Factor Xa In Complex With M55192
pdb|2P3F|H Chain H, Crystal Structure Of The Factor XaNAP5 COMPLEX
Length = 235
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G C IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1MQ5|A Chain A, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|A Chain A, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1V3X|A Chain A, Factor Xa In Complex With The Inhibitor
1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|1WU1|A Chain A, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
pdb|2D1J|A Chain A, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2H9E|H Chain H, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
pdb|2P3U|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|B Chain B, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-
2- Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|2EI6|A Chain A, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|A Chain A, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|A Chain A, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,
4-C]pyridin-2-Yl) Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|A Chain A, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|A Chain A, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|A Chain A, Factor Xa In Complex With D102-4380
pdb|3TK6|A Chain A, Factor Xa In Complex With D46-5241
Length = 233
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G C IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|D Chain D, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|B Chain B, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|D Chain D, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|D Chain D, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|B Chain B, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 238
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G C IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1Z6E|A Chain A, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
pdb|2BMG|B Chain B, Crystal Structure Of Factor Xa In Complex With 50
pdb|2FZZ|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-
Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|A Chain A, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|A Chain A, Factor Xa In Complex With The Inhibitor
3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|A Chain A, Factor Xa In Complex With The Inhibitor
5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2PR3|A Chain A, Factor Xa Inhibitor
pdb|2Q1J|A Chain A, The Discovery Of Glycine And Related Amino Acid-Based
Factor Xa Inhibitors
pdb|2P16|A Chain A, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2RA0|A Chain A, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
pdb|2PHB|A Chain A, An Orally Efficacious Factor Xa Inhibitor
pdb|3CEN|A Chain A, Factor Xa In Complex With The Inhibitor
N-(2-(((5-Chloro-2- Pyridinyl)
Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|A Chain A, Factor Xa In Complex With The Inhibitor
1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|2W26|A Chain A, Factor Xa In Complex With Bay59-7939
pdb|2W3I|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|A Chain A, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3FFG|A Chain A, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-
Oxo-4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|A Chain A, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|A Chain A, Factor Xa In Complex With The Inhibitor 6-(2'-
(Methylsulfon Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|A Chain A, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5-
Dih 2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|A Chain A, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5-
Ox Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3LIW|A Chain A, Factor Xa In Complex With
(R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid
Amide
pdb|3M36|A Chain A, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|A Chain A, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
Length = 234
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G C IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|2BOK|A Chain A, Factor Xa- Cation
pdb|2JKH|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|A Chain A, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|B Chain B, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|A Chain A, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|A Chain A, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 241
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGEQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
+ GI S+G C IYT+V+ ++ WI ++ P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAK 241
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|A Chain A, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|A Chain A, Factor Xa - Cation Inhibitor Complex
Length = 234
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGEQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G C IYT+V+ ++ WI
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 228
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|B Chain B, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|B Chain B, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 249
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 13/210 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 41 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 98
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 99 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 155
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGDSGGP T D Y
Sbjct: 156 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKD--TYF 213
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G C IYT+V+ ++ WI
Sbjct: 214 VTGIVSWGEGCARKGKYGIYTKVTAFLKWI 243
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 189 MPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
+ I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 13 LTRIVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 59
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 55 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 110
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 111 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 147
>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|B Chain B, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 241
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 13/223 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKS-----PTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL +S T I SGFG+ + ++S
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR-THEKGRQS 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
RL + + ++ ++C + +I+ + CA +D CQGD+GGP T D Y
Sbjct: 141 TRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDAGGPHVTRFKD--TYF 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
+ GI S+G C IYT+V+ ++ WI ++ P +
Sbjct: 199 VTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAK 241
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGQECKDGECPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQA--KRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKS-----PTAIASGFGK 97
P+ F + PACL +S T I SGFG+
Sbjct: 96 TPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSL+SP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ CL +N + +GFGK
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEQST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGK 97
+ S T++ CL +N + +GFGK
Sbjct: 104 RSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGK 142
>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|B Chain B, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|C Chain C, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species.
pdb|1A0J|D Chain D, Crystal Structure Of A Non-Psychrophilic Trypsin From A
Cold-Adapted Fish Species
Length = 223
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 108/214 (50%), Gaps = 23/214 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLIS +V++AAHC S + VR G T+ ++ I+HP+Y +
Sbjct: 24 FCGGSLISSTWVVSAAHCYKSRI----QVRLGEHNIAVNEGTEQFIDSVKVIMHPSYNSR 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKL-----NYFDTKES 395
+DI L+K++ P + + L + + SG+G L NY DT
Sbjct: 80 NLD--NDIMLIKLSKPASLNSYVSTVALPSSCASSGTRCLVSGWGNLSGSSSNYPDT--- 134
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
LR + L I+++ +C+ I+S + CA M GGKD+CQGDSGGP+ +C
Sbjct: 135 LRCLD--LPILSSSSCNSAYPGQITSNMFCAGFMEGGKDSCQGDSGGPV------VCNGQ 186
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ G+ S+G C N P +YT+V Y WI T+
Sbjct: 187 LQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTM 220
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
I+GG + +QA +++ FCGGSLIS +V++AAHC S +
Sbjct: 1 IVGGYECRKNSASYQA---------SLQSGYHFCGGSLISSTWVVSAAHCYKSRI 46
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC S + VR G T+ ++ I+HP+Y + +DI L+K++
Sbjct: 38 AAHCYKSRI----QVRLGEHNIAVNEGTEQFIDSVKVIMHPSYNSRNLD--NDIMLIKLS 91
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN 99
P + + L + + SG+G L+
Sbjct: 92 KPASLNSYVSTVALPSSCASSGTRCLVSGWGNLS 125
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSLISP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 42 VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 101
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ L +N + +GFGK N
Sbjct: 102 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENST 161
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 162 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 221
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 222 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 256
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 59 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 118
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ L +N + +GFGK N
Sbjct: 119 RSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKEN 159
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSLISP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ L +N + +GFGK N
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ L +N + +GFGK N
Sbjct: 104 RSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKEN 144
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSLISP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ L +N + +GFGK N
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ L +N + +GFGK N
Sbjct: 104 RSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKEN 144
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSLISP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ L +N + +GFGK N
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ L +N + +GFGK N
Sbjct: 104 RSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEN 144
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSL+SP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ CL +N + +GFGK
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEAST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGK 97
+ S T++ CL +N + +GFGK
Sbjct: 104 RSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGK 142
>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|Z Chain Z, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 237
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 23/223 (10%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPN 336
++ CGG L+ PN+V+TAAHC Y + L HR V + I HP
Sbjct: 22 TQYLCGGVLLDPNWVLTAAHCYDD-----NYKVWLGKNNLFKDEPSAQHRFVSKAIPHPG 76
Query: 337 YTTEGTSQY---------HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKL 387
+ ++ +D+ LL+++ P + ++T+KP L T +ASG+G +
Sbjct: 77 FNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEPKLGSTCLASGWGSI 136
Query: 388 NYFDTKESLRLMKVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTI 446
+ + L V L ++ N+ C+K ++ + LCA M GGKDTC+GDSGGPL
Sbjct: 137 TPTKFQFTDDLYCVNLKLLPNEDCAKAHIEKVTDAMLCAGEMDGGKDTCKGDSGGPL--- 193
Query: 447 MPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
+C + GITS+G CG + P +YT+++ + WI T+
Sbjct: 194 ---ICDGVLQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 37 HR-VMQNILHPNYTTEGTSQY---------HDIALLKIAPPVEFSETLKPACLNRAHNVK 86
HR V + I HP + ++ +D+ LL+++ P + ++T+KP L
Sbjct: 65 HRFVSKAIPHPGFNMSLMRKHIRFLEYDYSNDLMLLRLSKPADITDTVKPITLPTEEPKL 124
Query: 87 SPTAIASGFGKL 98
T +ASG+G +
Sbjct: 125 GSTCLASGWGSI 136
>pdb|1AUT|C Chain C, Human Activated Protein C
Length = 250
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 19/228 (8%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CG LI P++V+TAAHC+ K VR G + + + + +HPNY+
Sbjct: 27 CGAVLIHPSWVLTAAHCMDE--SKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKST 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKLNYFDTKES 395
T +DIALL +A P S+T+ P CL R N + +G+G + KE+
Sbjct: 85 TD--NDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWG-YHSSREKEA 141
Query: 396 LRLMKVVLDIIN-----NDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPD 449
R VL+ I ++ CS+ + ++S LCA ++ +D C+GDSGGP+ +
Sbjct: 142 KRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPM--VASF 199
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSS 497
+ ++G+ S+G CG + +YT+VS Y+ WI + + P S
Sbjct: 200 HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKEAPQKS 247
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + + + + +HPNY+ T +DIALL +A
Sbjct: 40 AAHCMDE--SKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTD--NDIALLHLA 95
Query: 66 PPVEFSETLKPACL------NRAHNVKSPTAIASGFG 96
P S+T+ P CL R N + +G+G
Sbjct: 96 QPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWG 132
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSL+SP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ CL +N + +GFGK
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEAST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGK 97
+ S T++ CL +N + +GFGK
Sbjct: 104 RSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGK 142
>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To
Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane
Length = 235
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 116/219 (52%), Gaps = 20/219 (9%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTD---NIHRVMQNIL 333
D + CG SL+S +++++AAHC+ +P + L ++ ++T + Q ++
Sbjct: 21 DDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVI 80
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNYFD 391
+P+Y + +DIA++ + V +++ ++P CL + V P I S G+G L Y
Sbjct: 81 NPHYNKR--RKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQG 138
Query: 392 TKESLRLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPD 449
+ + L + + +++N+ C +Q E + + +CA AGG D+CQGDSGGPL
Sbjct: 139 STADV-LQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQGDSGGPL------ 191
Query: 450 LCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+C N + G+TS+G QC N P +Y RV + WI
Sbjct: 192 MCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWI 230
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTD---NIHRVMQNILHPNYTTEGTSQYHDIALL 62
AAHC+ +P + L ++ ++T + Q +++P+Y + +DIA++
Sbjct: 39 AAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVINPHYNKR--RKNNDIAMM 96
Query: 63 KIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNY 100
+ V +++ ++P CL + V P I S G+G L Y
Sbjct: 97 HLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIY 136
>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 240
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 19/215 (8%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CG LI P++V+TAAHC+ K VR G + + + + +HPNY+
Sbjct: 27 CGAVLIHPSWVLTAAHCMDES--KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKST 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKLNYFDTKES 395
T +DIALL +A P S+T+ P CL R N + +G+G + KE+
Sbjct: 85 TD--NDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWG-YHSSREKEA 141
Query: 396 LRLMKVVLDIIN-----NDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPD 449
R VL+ I ++ CS+ + ++S LCA ++ +D C+GDSGGP+
Sbjct: 142 KRNRTFVLNFIKIPVVPHNECSEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHG 201
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ ++G+ S+G CG + +YT+VS Y+ WI
Sbjct: 202 --TWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWI 234
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + + + + +HPNY+ T +DIALL +A
Sbjct: 40 AAHCMDES--KKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTD--NDIALLHLA 95
Query: 66 PPVEFSETLKPACL------NRAHNVKSPTAIASGFG 96
P S+T+ P CL R N + +G+G
Sbjct: 96 QPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWG 132
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSL+SP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ CL +N + +GFGK
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKEAST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDACQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGK 97
+ S T++ CL +N + +GFGK
Sbjct: 104 RSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGK 142
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + V + I+H Y
Sbjct: 415 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK 473
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P CL NV +G+G D ++
Sbjct: 474 MAESG--YDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 531
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 532 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 588
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 589 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 619
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + V + I+H Y + +DIALLK
Sbjct: 429 AAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 485
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P CL NV +G+G Y K++D+ L A
Sbjct: 486 LETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 536
Query: 122 V 122
+
Sbjct: 537 I 537
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 11/209 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+++S Y++TAAHC+ K VR G + +H V I H +T E
Sbjct: 26 FCGGTILSEFYILTAAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ DIA+L++ P+ F + PA L A + SG+G L
Sbjct: 84 --TYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQC 141
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ +++ C I+S + C + GGKD+CQGDSGGP+ +C + G+
Sbjct: 142 LDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPV------VCNGQLQGVV 195
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI +T+
Sbjct: 196 SWGDGCAQKNKPGVYTKVYNYVKWIKNTI 224
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG K GE P QA + E G FCGG+++S Y++TAAHC+
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEG-------FCGGTILSEFYILTAAHCL 44
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + +H V I H +T E + DIA+L++
Sbjct: 40 AAHCLYQ--AKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFG 96
P+ F + PA L A + SG+G
Sbjct: 96 TPITFRMNVAPASLPTAPPATGTKCLISGWG 126
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSL+SP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ L +N + +GFGK N
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKENST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
Query: 65 APP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLN 99
+ S T++ L +N + +GFGK N
Sbjct: 104 RSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEN 144
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P L NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P L NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P L NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQAEIAEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P L NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|2ZCK|P Chain P, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|P Chain P, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
pdb|3QUM|P Chain P, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
pdb|3QUM|Q Chain Q, Crystal Structure Of Human Prostate Specific Antigen (Psa)
In Fab Sandwich With A High Affinity And A Pca Selective
Antibody
Length = 237
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 21/218 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE- 340
CGG L+ P +V+TAAHCI + + G + T + +V + HP Y
Sbjct: 26 CGGVLVHPQWVLTAAHCIRNK----SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSL 81
Query: 341 --------GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
G HD+ LL+++ P E ++ +K L T ASG+G + +
Sbjct: 82 LKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEF 141
Query: 393 KESLRLMKVVLDIINNDTCSKQETTLISS-QLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
+L V L +I+ND C++ ++ LCA GGK TC GDSGGPL +C
Sbjct: 142 LTPKKLQCVDLHVISNDVCAQVHPQKVTKFMLCAGRWTGGKSTCSGDSGGPL------VC 195
Query: 452 MYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
+ GITS+G + C P++YT+V +Y WI T+
Sbjct: 196 NGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTI 233
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 13/114 (11%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE---------GTSQY 56
AAHCI + + G + T + +V + HP Y G
Sbjct: 39 AAHCIRNK----SVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSS 94
Query: 57 HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQ 110
HD+ LL+++ P E ++ +K L T ASG+G + E K+Q
Sbjct: 95 HDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQ 148
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P L NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQAEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P L NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYADSQRPISLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P L NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P L NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIAEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P L NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQSEIAEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P L NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSLISP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ L +N + +GFGK
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSLISP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ L +N + +GFGK
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGDSGGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGS+++ +++TAAHC+ + G V G T+ V++ I H NY
Sbjct: 25 FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
+ HDIALL++ P+ + + P C+ +K + SG+G++ + + +L
Sbjct: 83 INTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRSAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
L + + +++ TC + + T+ ++ CA GG+D+CQGDSGGP T + +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
GI S+G +C IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG AK G+FP Q + V FCGGS+++ +++TAAHC+ + + T+V
Sbjct: 1 VVGGEDAKPGQFPWQVVLN--------GKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV 52
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ + G V G T+ V++ I H NY + HDIALL++
Sbjct: 39 AAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINTYNHDIALLELD 96
Query: 66 PPVEFSETLKPACLNRAHN----VKSPTAIASGFGKL 98
P+ + + P C+ +K + SG+G++
Sbjct: 97 EPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV 133
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 106/211 (50%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYT 338
CGGS+I +++TAAHC + P+ +R G++ + + V + I+H Y
Sbjct: 28 LCGGSIIGNQWILTAAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYK 86
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DIALLK+ V ++++ +P L NV +G+G D ++
Sbjct: 87 MAESG--YDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNT 144
Query: 397 RLMKVVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L K + ++ N+ C K+ + +CA GGKD C+GDSGGPL ++ ++
Sbjct: 145 -LQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEV--WH 201
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWIV 485
++GITS+G C P +YT V YV WI+
Sbjct: 202 LVGITSWGEGCAQRERPGVYTNVVEYVDWIL 232
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 6 AAHCITSPLGKPRYVRF--GLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHC + P+ +R G++ + + V + I+H Y + +DIALLK
Sbjct: 42 AAHCFYG-VESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLK 98
Query: 64 IAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESPIALAPAL 121
+ V ++++ +P L NV +G+G Y K++D+ L A
Sbjct: 99 LETTVNYTDSQRPISLPSKGDRNVIYTDCWVTGWG---------YRKLRDKIQNTLQKAK 149
Query: 122 V 122
+
Sbjct: 150 I 150
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 107/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGS+++ +++TAAHC+ + G V G T+ V++ I H NY
Sbjct: 25 FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
HDIALL++ P+ + + P C+ +K + SG+G++ + + +L
Sbjct: 83 INKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRSAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
L + + +++ TC + + T+ ++ CA GG+D+CQGDSGGP T + +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
GI S+G +C IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG AK G+FP Q + V FCGGS+++ +++TAAHC+ + + T+V
Sbjct: 1 VVGGEDAKPGQFPWQVVLN--------GKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV 52
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ + G V G T+ V++ I H NY HDIALL++
Sbjct: 39 AAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELD 96
Query: 66 PPVEFSETLKPACLNRAHN----VKSPTAIASGFGKL 98
P+ + + P C+ +K + SG+G++
Sbjct: 97 EPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV 133
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGS+I+ +V+TAAHCI G V G T+ V++ I H +Y
Sbjct: 25 FCGGSIINEKWVVTAAHCIEP--GVKITVVAGEYNTEETEPTEQRRNVIRAIPHHSYNAT 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKL-NYFDTKES 395
HDIALL++ P+ + + P C+ +K + SG+G++ N +
Sbjct: 83 VNKYSHDIALLELDEPLTLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATI 142
Query: 396 LRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L+ +KV L ++ TC + + T+ S+ CA GGKD+CQGDSGGP T +
Sbjct: 143 LQYLKVPL--VDRATCLRSTKFTIYSNMFCAGFHEGGKDSCQGDSGGPHVTEVEGTSF-- 198
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G +C IYT+VS YV WI
Sbjct: 199 LTGIISWGEECAVKGKYGIYTKVSRYVNWI 228
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
I+GG AK G+FP Q + + FCGGS+I+ +V+TAAHCI + T+V
Sbjct: 1 IVGGENAKPGQFPWQVLLN--------GKIDAFCGGSIINEKWVVTAAHCIEPGVKITVV 52
Query: 252 KAPLRT 257
T
Sbjct: 53 AGEYNT 58
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHCI G V G T+ V++ I H +Y HDIALL++
Sbjct: 39 AAHCIEP--GVKITVVAGEYNTEETEPTEQRRNVIRAIPHHSYNATVNKYSHDIALLELD 96
Query: 66 PPVEFSETLKPACLNRAHN----VKSPTAIASGFGKL 98
P+ + + P C+ +K + SG+G++
Sbjct: 97 EPLTLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV 133
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 278 VKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPN 336
V + CGGSLISP +V++A HC K Y+ + ++L+ + + ++N ILH +
Sbjct: 27 VTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKD 86
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKS--PTAIASGFGKLNYF 390
Y+ + + ++DIALLKI + S T++ L +N + +GFGK
Sbjct: 87 YSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQST 146
Query: 391 DTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
D +L V+ +I++ C + + + + LCA D+CQGD+GGPL +
Sbjct: 147 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDAGGPLVCSL 206
Query: 448 PDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+GR C + P +YTRVS+++PWI
Sbjct: 207 QG--RMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWI 241
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN-ILHPNYTTEGTSQYHDIALLKI 64
A HC K Y+ + ++L+ + + ++N ILH +Y+ + + ++DIALLKI
Sbjct: 44 ATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKI 103
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGS+++ +++TAAHC+ + G V G T+ V++ I H N+
Sbjct: 25 FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
+ HDIALL++ P+ + + P C+ +K + SG+G++ + + +L
Sbjct: 83 INTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRSAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
L + + +++ TC + + T+ ++ CA GG+D+CQGDSGGP T + +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
GI S+G +C IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG AK G+FP Q + V FCGGS+++ +++TAAHC+ + + T+V
Sbjct: 1 VVGGEDAKPGQFPWQVVLN--------GKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV 52
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ + G V G T+ V++ I H N+ + HDIALL++
Sbjct: 39 AAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELD 96
Query: 66 PPVEFSETLKPACLNRAHN----VKSPTAIASGFGKL 98
P+ + + P C+ +K + SG+G++
Sbjct: 97 EPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV 133
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
G + +DI L+K++ P + + L R+ + SG+G + L
Sbjct: 78 GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ +++N +C S + + +C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LKAPVLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
I+GG P+Q ++ FCGGSLI+ +V++AAHC S +
Sbjct: 1 IVGGYTCAANSIPYQV---------SLNSGSHFCGGSLINSQWVVSAAHCYKSRI 46
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC S + VR G + + I HPN+ G + +DI L+K++
Sbjct: 38 AAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--NGNTLDNDIMLIKLS 91
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
P + + L R+ + SG+G
Sbjct: 92 SPATLNSRVATVSLPRSCAAAGTECLISGWGN 123
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGS+++ +++TAAHC+ + G V G T+ V++ I H N+
Sbjct: 25 FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
+ HDIALL++ P+ + + P C+ +K + SG+G++ + + +L
Sbjct: 83 INTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRAAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
L + + +++ TC + + T+ ++ CA GG+D+CQGDSGGP T + +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
GI S+G +C IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG AK G+FP Q + V FCGGS+++ +++TAAHC+ + + T+V
Sbjct: 1 VVGGEDAKPGQFPWQVVLN--------GKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV 52
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ + G V G T+ V++ I H N+ + HDIALL++
Sbjct: 39 AAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFNAAINTYNHDIALLELD 96
Query: 66 PPVEFSETLKPACLNRAHN----VKSPTAIASGFGKL 98
P+ + + P C+ +K + SG+G++
Sbjct: 97 EPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV 133
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 10/209 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGS+++ +++TAAHC+ + G V G T+ V++ I H NY
Sbjct: 25 FCGGSIVNEKWIVTAAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAA 82
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN----VKSPTAIASGFGKLNYFDTKESL 396
HDIALL++ P+ + + P C+ +K + SG+G++ + + +L
Sbjct: 83 INKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV-FHKGRSAL 141
Query: 397 RLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
L + + +++ TC + + T+ ++ CA GG+D+CQGD+GGP T + +
Sbjct: 142 VLQYLRVPLVDRATCLRSTKFTIYNNMFCAGFHEGGRDSCQGDAGGPHVTEVEGTSF--L 199
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
GI S+G +C IYT+VS YV WI
Sbjct: 200 TGIISWGEECAMKGKYGIYTKVSRYVNWI 228
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG AK G+FP Q + V FCGGS+++ +++TAAHC+ + + T+V
Sbjct: 1 VVGGEDAKPGQFPWQVVLN--------GKVDAFCGGSIVNEKWIVTAAHCVETGVKITVV 52
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ + G V G T+ V++ I H NY HDIALL++
Sbjct: 39 AAHCVET--GVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELD 96
Query: 66 PPVEFSETLKPACLNRAHN----VKSPTAIASGFGKL 98
P+ + + P C+ +K + SG+G++
Sbjct: 97 EPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRV 133
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 20/222 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLI---TKLSYSVTDNIHRVMQN------I 332
CGGSL++ +++TAAHC K + + LI ++ + + +Q I
Sbjct: 32 CGGSLLNSQWLLTAAHCFRI---KKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKII 88
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN--RAHNVKSP-TAIASGFGKLNY 389
+H Y+ +S+ +DIAL+KI PPV + P CL RA + P T +G+G L
Sbjct: 89 IHEKYSA--SSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQE 146
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGKDTCQGDSGGPLQTI 446
+ S L + +D+I+ C+ + S+ +CA G DTCQGDSGGPL
Sbjct: 147 NARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCK 206
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
Y ++GITS+G C A P +YT Y+ WI +
Sbjct: 207 DSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 39 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN--RAHNVKSP-TAIASGF 95
V + I+H Y+ +S+ +DIAL+KI PPV + P CL RA + P T +G+
Sbjct: 84 VEKIIIHEKYSA--SSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGW 141
Query: 96 GKLN 99
G L
Sbjct: 142 GFLQ 145
>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5A|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5B|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
pdb|1Y5U|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific
Inhibitor In Complex With Bovine Trypsin Mutant
Length = 223
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed
With A Peptide Inhibitor, Sgti
Length = 237
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 12/210 (5%)
Query: 281 FCGGSLISPNYVMTAAHCI-TSPLGKPRYVRFGLITKLSYSV---TDNIHRVMQNILHPN 336
FCG S+ + NY +TA HC+ P ++ + +L SV ++ I V + ILH N
Sbjct: 29 FCGASIYNENYAITAGHCVYGDDYENPSGLQI-VAGELDMSVNEGSEQIITVSKIILHEN 87
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DI+LLK++ + F++ + P L + + I +G+G + +
Sbjct: 88 FDYNLLD--NDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDV 145
Query: 397 RLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
L KV + +++++ C ++ S +CA V GGKD+CQGDSGGPL D
Sbjct: 146 -LQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAA--SDTGSTY 202
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G C P +YT VSY+V WI
Sbjct: 203 LAGIVSWGYGCARPGYPGVYTEVSYHVDWI 232
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW-FCGGSLISPNYVMTAAHCI 242
I+GG+ A GEFP+Q + F E T + FCG S+ + NY +TA HC+
Sbjct: 1 IVGGTDATLGEFPYQ--LSFQE---TFIGFSFHFCGASIYNENYAITAGHCV 47
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 33 TDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA 92
++ I V + ILH N+ +DI+LLK++ + F++ + P L + + I
Sbjct: 73 SEQIITVSKIILHENFDYNLLD--NDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIV 130
Query: 93 SGFG 96
+G+G
Sbjct: 131 TGWG 134
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+
Sbjct: 32 FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
G + +DI L+K++ P + + L R+ + SG+G + L
Sbjct: 86 GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 145
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++++ +C S + + +C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 146 LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 199
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 200 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 228
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
I+GG P+Q ++ FCGGSLI+ +V++AAHC S +
Sbjct: 9 IVGGYTCAANSIPYQV---------SLNSGSHFCGGSLINSQWVVSAAHCYKSRI 54
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC S + VR G + + I HPN+ G + +DI L+K++
Sbjct: 46 AAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--NGNTLDNDIMLIKLS 99
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
P + + L R+ + SG+G
Sbjct: 100 SPATLNSRVATVSLPRSCAAAGTECLISGWGN 131
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
G + +DI L+K++ P + + L R+ + SG+G + L
Sbjct: 78 GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++++ +C S + + +C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSRI 46
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC S + VR G + + I HPN+ G + +DI L+K++
Sbjct: 38 AAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--NGNTLDNDIMLIKLS 91
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
P + + L R+ + SG+G
Sbjct: 92 SPATLNSRVATVSLPRSCAAAGTECLISGWGN 123
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
G + +DI L+K++ P + + L R+ + SG+G + L
Sbjct: 78 GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++++ +C S + + +C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
I+GG P+Q ++ FCGGSLI+ +V++AAHC S +
Sbjct: 1 IVGGYTCAANSIPYQV---------SLNSGSHFCGGSLINSQWVVSAAHCYKSRI 46
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC S + VR G + + I HPN+ G + +DI L+K++
Sbjct: 38 AAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--NGNTLDNDIMLIKLS 91
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
P + + L R+ + SG+G
Sbjct: 92 SPATLNSRVATVSLPRSCAAAGTECLISGWGN 123
>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
pdb|3MYW|B Chain B, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary
Complex With Porcine Trypsin
Length = 223
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
G + +DI L+K++ P + + L R+ + SG+G + L
Sbjct: 78 GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++++ +C S + + +C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LKAPVLSDSSCKSAYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
I+GG P+Q ++ FCGGSLI+ +V++AAHC S +
Sbjct: 1 IVGGYTCAANSVPYQV---------SLNSGSHFCGGSLINSQWVVSAAHCYKSRI 46
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 14/127 (11%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC S + VR G + + I HPN+ G + +DI L+K++
Sbjct: 38 AAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--NGNTLDNDIMLIKLS 91
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFGKL--------NYFECTQYSKIQDESPIAL 117
P + + L R+ + SG+G + +C + + D S +
Sbjct: 92 SPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSA 151
Query: 118 APALVGG 124
P + G
Sbjct: 152 YPGQITG 158
>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin
Length = 223
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCXKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSXPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGXLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCXKSGI 46
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
G + +DI L+K++ P + L R+ + SG+G + L
Sbjct: 78 GNTLDNDIMLIKLSSPATLXSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++++ +C S + + +C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 192 SWGYGCAQKNKPGVYTKVCNYVNWIQQTI 220
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
I+GG P+Q ++ FCGGSLI+ +V++AAHC S +
Sbjct: 1 IVGGYTCAANSIPYQV---------SLNSGSHFCGGSLINSQWVVSAAHCYKSRI 46
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC S + VR G + + I HPN+ G + +DI L+K++
Sbjct: 38 AAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--NGNTLDNDIMLIKLS 91
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
P + L R+ + SG+G
Sbjct: 92 SPATLXSRVATVSLPRSCAAAGTECLISGWGN 123
>pdb|1KIG|H Chain H, Bovine Factor Xa
Length = 241
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG++++ YV+TAAHC+ K VR G + H V + H + E
Sbjct: 26 FCGGTILNEFYVLTAAHCLHQ--AKRFTVRVGDRNTEQEEGNEMAHEVEMTVKHSRFVKE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-----NRAHNVKSPTAIASGFGKLNYFDTKES 395
+ DIA+L++ P+ F + PACL A + T I SGFG+ T E
Sbjct: 84 --TYDFDIAVLRLKTPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGR-----THEK 136
Query: 396 LRLMKVV--LDI--INNDTCSKQET-TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
RL + L++ ++ TC + T+ + CA +D CQGDSGGP T D
Sbjct: 137 GRLSSTLKMLEVPYVDRSTCKLSSSFTITPNMFCAGYDTQPEDACQGDSGGPHVTRFKD- 195
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
Y + GI S+G C +YT+VS ++ WI
Sbjct: 196 -TYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWI 228
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ K VR G + H V + H + E + DIA+L++
Sbjct: 40 AAHCLHQA--KRFTVRVGDRNTEQEEGNEMAHEVEMTVKHSRFVKE--TYDFDIAVLRLK 95
Query: 66 PPVEFSETLKPACL-----NRAHNVKSPTAIASGFGK 97
P+ F + PACL A + T I SGFG+
Sbjct: 96 TPIRFRRNVAPACLPEKDWAEATLMTQKTGIVSGFGR 132
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG GE P QA + E G FCGG++++ YV+TAAHC+
Sbjct: 1 IVGGRDCAEGECPWQALLVNEENEG-------FCGGTILNEFYVLTAAHCL 44
>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
pdb|1SGF|X Chain X, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth
Factor With Four Binding Proteins (serine Proteinases)
Length = 240
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 23/222 (10%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNY 337
K+ CGG L+ N+V+TAAHC +Y V G L +D V + I HP++
Sbjct: 26 KYQCGGVLLDRNWVLTAAHCYND-----KYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDF 80
Query: 338 T----TEGTSQ-----YHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLN 388
E T Q +D+ LL+++ P + ++ +KP L T +ASG+G
Sbjct: 81 NMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTT 140
Query: 389 YFDTKESLRLMKVVLDIINNDTCSK-QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
K L V L ++ N+ C K E + + LCA M GG TC+ DSGGPL
Sbjct: 141 PIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPL---- 196
Query: 448 PDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
+C + GITS+G + CG P++YT++ + WI T+
Sbjct: 197 --ICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 6 AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYT----TEGTSQ----- 55
AAHC +Y V G L +D V + I HP++ E T Q
Sbjct: 42 AAHCYND-----KYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDY 96
Query: 56 YHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFG 96
+D+ LL+++ P + ++ +KP L T +ASG+G
Sbjct: 97 SNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWG 137
>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A
Engineered Mutant Trypsin Inhibitor
Length = 223
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASVSLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CAGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To
Atomic Resolution
pdb|1XVO|A Chain A, Trypsin From Fusarium Oxysporum At Ph 6
pdb|1FY5|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDN|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FY4|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1FN8|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1GDQ|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
Length = 224
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 16/201 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
+CGGSL++ N V+TAAHC++ +R G +++ S +T ++ V +HP+Y+
Sbjct: 25 WCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSYS-- 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
+D+A+LK++ + + A L + + V +A +G+G + + + L
Sbjct: 80 --GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNL 137
Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
+KV + I++ TC Q T+ I++Q+ CA V +GGKD+CQGDSGGP+ L I
Sbjct: 138 LKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSSNTL-----I 192
Query: 457 GITSYGRQCGHANTPAIYTRV 477
G S+G C N +Y V
Sbjct: 193 GAVSWGNGCARPNYSGVYASV 213
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC++ +R G +++ S +T ++ V +HP+Y + +D+A+LK++
Sbjct: 39 AAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSY----SGNNNDLAILKLS 91
Query: 66 PPVEFSETLKPACLNRAHN--VKSPTAIASGFG 96
+ + A L + + V +A +G+G
Sbjct: 92 TSIPSGGNIGYARLAASGSDPVAGSSATVAGWG 124
>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution
pdb|1PQ5|A Chain A, Trypsin At Ph 5, 0.85 A
pdb|1PQ7|A Chain A, Trypsin At 0.8 A, Ph5 BORAX
pdb|1PQ8|A Chain A, Trypsin At Ph 4 At Atomic Resolution
pdb|2G51|A Chain A, Anomalous Substructure Of Trypsin (P1)
pdb|2G52|A Chain A, Anomalous Substructure Of Trypsin (P21)
pdb|1TRY|A Chain A, Structure Of Inhibited Trypsin From Fusarium Oxysporum At
1.55 Angstroms
pdb|2VU8|E Chain E, Crystal Structure Of An Insect Inhibitor With A Fungal
Trypsin
Length = 224
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 16/201 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
+CGGSL++ N V+TAAHC++ +R G +++ S +T ++ V +HP+Y+
Sbjct: 25 WCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSYS-- 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
+D+A+LK++ + + A L + + V +A +G+G + + + L
Sbjct: 80 --GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNL 137
Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
+KV + I++ TC Q T+ I++Q+ CA V +GGKD+CQGDSGGP+ L I
Sbjct: 138 LKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSSNTL-----I 192
Query: 457 GITSYGRQCGHANTPAIYTRV 477
G S+G C N +Y V
Sbjct: 193 GAVSWGNGCARPNYSGVYASV 213
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC++ +R G +++ S +T ++ V +HP+Y + +D+A+LK++
Sbjct: 39 AAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSY----SGNNNDLAILKLS 91
Query: 66 PPVEFSETLKPACLNRAHN--VKSPTAIASGFG 96
+ + A L + + V +A +G+G
Sbjct: 92 TSIPSGGNIGYARLAASGSDPVAGSSATVAGWG 124
>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant
Length = 229
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNKR--RKNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|B Chain B, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|C Chain C, Structure Of A Human Enteropeptidase Light Chain Variant
pdb|4DGJ|D Chain D, Structure Of A Human Enteropeptidase Light Chain Variant
Length = 235
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 20/223 (8%)
Query: 273 GTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVR--FGLITKLSYSVTDNIHRVMQ 330
G D + CG SL+S +++++AAHC+ +P GL K + + + R++
Sbjct: 17 GLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLID 76
Query: 331 NI-LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKL 387
I ++P+Y + +DIA++ + V +++ ++P L + V P S G+G +
Sbjct: 77 EIVINPHYNRR--RKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTV 134
Query: 388 NYFDTKESLRLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQT 445
Y T + L + + +++N+ C +Q E + + +CA GG D+CQGDSGGPL
Sbjct: 135 VYQGTTADI-LQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDSGGPL-- 191
Query: 446 IMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+C N + G+TS+G +C N P +Y RVS + WI
Sbjct: 192 ----MCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWI 230
>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
Length = 237
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 38 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 84
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 85 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 142
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 143 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 196
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 197 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 234
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 38 FCGGSLINSQWVVSAAHCYKSGI 60
>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between
Pancreatic Secretory Inhibitor (Kazal Type) And
Trypsinogen At 1.8 Angstroms Resolution. Structure
Solution, Crystallographic Refinement And Preliminary
Structural Interpretation
pdb|2TGP|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2TPI|Z Chain Z, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3TPI|Z Chain Z, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|4TPI|Z Chain Z, The Refined 2.2-angstroms (0.22-nm) X-ray Crystal
Structure Of The Ternary Complex Formed By Bovine
Trypsinogen, Valine-valine And The Arg15 Analogue Of
Bovine Pancreatic Trypsin Inhibitor
pdb|1BTZ|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTX|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTW|A Chain A, Episelection: Novel Ki ~nanomolar Inhibitors Of Serine
Proteases Selected By Binding Or Chemistry On An Enzyme
Surface
pdb|1BTP|A Chain A, Unique Binding Of A Novel Synthetic Inhibitor, N-[3-[4-[4-
(Amidinophenoxy)-Carbonyl]phenyl]-2-Methyl-2-Propenoyl]-
N- Allylglycine Methanesulfonate To Bovine Trypsin,
Revealed By The Crystal Structure Of The Complex
pdb|1BTY|A Chain A, Crystal Structure Of Beta-Trypsin In Complex With
Benzamidine
pdb|1TGB|A Chain A, Crystal Structure Of Bovine Trypsinogen At 1.8 Angstroms
Resolution. Ii. Crystallographic Refinement, Refined
Crystal Structure And Comparison With Bovine Trypsin
pdb|1TGC|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TGN|A Chain A, Structure Of Bovine Trypsinogen At 1.9 Angstroms
Resolution
pdb|1TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1TNG|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNH|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNI|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNJ|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNK|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|1TNL|A Chain A, Prediction Of Novel Serine Protease Inhibitors
pdb|2TGA|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|2TGD|A Chain A, Lack Of The Transition State Stabilization Site Is A
Factor In The Inactivity Of Trypsinogen, A Serine
Protease Zymogen. Structure Of Dfp Inhibited Bovine
Trypsinogen At 2.1 Angstroms Resolution
pdb|2TGT|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
Length = 229
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 30 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 76
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 77 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 134
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 135 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 188
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 189 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 226
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 30 FCGGSLINSQWVVSAAHCYKSGI 52
>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Magnesium(Ii) Chelate
pdb|1G3C|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff Base
Iron(Iii) Chelate
pdb|1G3D|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base
Copper (Ii) Chelate
pdb|1G3E|A Chain A, Bovine Beta-Trypsin Bound To Para-Amidino Schiff-Base
Copper (Ii) Chelate
Length = 228
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 29 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 75
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 76 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 133
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 134 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 187
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 188 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 225
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 29 FCGGSLINSQWVVSAAHCYKSGI 51
>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine
Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT
REFINEMENT
Length = 223
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247
pdb|1F0U|A Chain A, Bovine Trypsin Complexed With Rpr128515
pdb|1EZX|C Chain C, Crystal Structure Of A Serpin:protease Complex
pdb|1LQE|A Chain A, Crystal Structure Of Trypsin In Complex With 79.
pdb|1UTN|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTO|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-ray Structures And Association Constant Measurements
pdb|1UTP|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTQ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|2BY5|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY6|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY7|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY8|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY9|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BYA|X Chain X, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 243
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 44 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 90
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 91 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 148
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 149 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 202
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 203 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 44 FCGGSLINSQWVVSAAHCYKSGI 66
>pdb|2FI5|E Chain E, Crystal Structure Of A Bpti Variant (Cys38->ser) In
Complex With Trypsin
pdb|2FTM|A Chain A, Crystal Structure Of Trypsin Complexed With The Bpti
Variant (Tyr35- >gly)
Length = 224
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 107/226 (47%), Gaps = 46/226 (20%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--------G 383
I+HP+Y + + +DI L+K+ ++ R ++ PT+ AS G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLXDS-------RVASISLPTSCASAGTQCLISG 121
Query: 384 FGKLNYFDTKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGP 442
+G T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP
Sbjct: 122 WGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGP 181
Query: 443 LQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ +C + GI S+G C N P +YT+V YV WI T+
Sbjct: 182 V------VCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 221
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk
Type Protease Inhibitor And Its Interaction With Trypsin
pdb|1TPA|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|2PTC|E Chain E, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1PPC|E Chain E, Geometry Of Binding Of The Benzamidine-and Arginine-based
Inhibitors
N-alpha-(2-naphthyl-sulphonyl-glycyl)-dl-p-
amidinophenylalanyl- Piperidine (napap) And
(2r,4r)-4-methyl-1-[n-alpha-(3-methyl-1,2,3,4-
Tetrahydro-8-quinolinesulphonyl)-l-arginyl]-2-piperidine
Carboxylic Acid (mqpa) To Human Alpha-thrombin: X-ray
Crystallographic Determination Of The Napap-trypsin
Complex And Modeling Of Napap- Thrombin And
Mqpa-thrombin
pdb|1PPE|E Chain E, The Refined 2.0 Angstroms X-Ray Crystal Structure Of The
Complex Formed Between Bovine Beta-Trypsin And Cmti-I, A
Trypsin Inhibitor From Squash Seeds (Cucurbita Maxima):
Topological Similarity Of The Squash Seed Inhibitors
With The Carboxypeptidase A Inhibitor From Potatoes
pdb|1PPH|E Chain E, Geometry Of Binding Of The Nalpha-Tosylated Piperidides Of
M-Amidino-, P-Amidino-And P-Guanidino Phenylalanine To
Thrombin And Trypsin: X- Ray Crystal Structures Of Their
Trypsin Complexes And Modeling Of Their Thrombin
Complexes
pdb|1SMF|E Chain E, Studies On An Artificial Trypsin Inhibitor Peptide Derived
From The Mung Bean Inhibitor
pdb|1JRT|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1JRS|A Chain A, Hemiacetal Complex Between Leupeptin And Trypsin
pdb|1CE5|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzamidine
pdb|2BZA|A Chain A, Bovine Pancreas Beta-Trypsin In Complex With Benzylamine
pdb|1QCP|A Chain A, Crystal Structure Of The Rwj-51084 Bovine Pancreatic Beta-
Trypsin At 1.8 A
pdb|1SBW|A Chain A, Crystal Structure Of Mung Bean Inhibitor Lysine Active
Fragment Complex With Bovine Beta-Trypsin At 1.8a
Resolution
pdb|1YYY|1 Chain 1, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1SFI|A Chain A, High Resolution Structure Of A Potent, Cyclic Protease
Inhibitor From Sunflower Seeds
pdb|1TIO|A Chain A, High Packing Density Form Of Bovine Beta-trypsin In
Cyclohexane
pdb|2TIO|A Chain A, Low Packing Density Form Of Bovine Beta-Trypsin In
Cyclohexane
pdb|2BTC|E Chain E, Bovine Trypsin In Complex With Squash Seed Inhibitor
(Cucurbita Pepo Trypsin Inhibitor Ii)
pdb|3BTE|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta-Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTD|E Chain E, The Crystal Structures Of The Complexes Between The Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTF|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti.
pdb|3BTG|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTH|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTK|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTM|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTQ|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTT|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|3BTW|E Chain E, The Crystal Structures Of The Complexes Between Bovine
Beta- Trypsin And Ten P1 Variants Of Bpti
pdb|1QBN|A Chain A, Bovine Trypsin 2-[amino(Imino)methyl]-2-Hydroxyphenoxy]-6-
[3-(4,5-Dihydro-1h-Imidazol-2-Yl)phenoxy]pyridine-4-
Carboxylic Acid (Zk-806688) Complex
pdb|1QBO|A Chain A, Bovine Trypsin
7-[[6-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
2-Methyl-Benzimidazol-1-Yl]methyl]naphthalene-2-
Carboximidamid Zk-806711 Inhibitor Complex
pdb|1QB9|A Chain A, Bovine Trypsin
7-[[2-[[1-(1-Iminoethyl)piperidin-4-Yl]oxy]-
9h-Carbozol-9-Yl] Methyl]naphthalene-2-Carboximidamide
(Zk- 806450) Complex
pdb|1QB1|A Chain A, Bovine Trypsin With 1-[2-[5-[amino(imino)methyl]-2-
Hydroxyphenoxy]-6-[3-(4,
5-dihydro-1-methyl-1h-imidazol-2-
Yl)phenoxy]pyridin-4-yl]piperidine-3-carboxylic Acid
(zk- 806974)
pdb|1QB6|A Chain A, Bovine Trypsin 3,3'-[3,5-Difluoro-4-Methyl-2, 6-
Pyridinediylbis(Oxy)]bis(Benzenecarboximidamide) (Zk-
805623) Complex
pdb|1QA0|A Chain A, Bovine Trypsin 2-Aminobenzimidazole Complex
pdb|1F2S|E Chain E, Crystal Structure Of The Complex Formed Between Bovine
Beta- Trypsin And Mcti-A, A Trypsin Inhibitor Of Squash
Family At 1.8 A Resolution
pdb|1D6R|A Chain A, Crystal Structure Of Cancer Chemopreventive Bowman-Birk
Inhibitor In Ternary Complex With Bovine Trypsin At 2.3
A Resolution. Structural Basis Of Janus-Faced Serine
Protease Inhibitor Specificity
pdb|1C9T|A Chain A, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|B Chain B, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|C Chain C, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|D Chain D, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|E Chain E, Complex Of Bdellastasin With Bovine Trypsin
pdb|1C9T|F Chain F, Complex Of Bdellastasin With Bovine Trypsin
pdb|1QL7|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1QL8|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1G9I|E Chain E, Crystal Structure Of Beta-Trysin Complex In Cyclohexane
pdb|1EJM|A Chain A, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|C Chain C, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1EJM|E Chain E, Crystal Structure Of The Bpti Ala16leu Mutant In Complex
With Bovine Trypsin
pdb|1JIR|A Chain A, Crystal Structure Of Trypsin Complex With Amylamine In
Cyclohexane
pdb|1J8A|A Chain A, Crystal Structure Of Benzamidine Inhibited Bovine
Pancreatic Trypsin At 105k To 1.21a Resolution From
Laboratory Source With High Number Of Waters Modelled
pdb|1G36|A Chain A, Trypsin Inhibitor Complex
pdb|1K1P|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1O|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1N|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1M|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1L|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1J|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1K1I|A Chain A, Bovine Trypsin-Inhibitor Complex
pdb|1EB2|A Chain A, Trypsin Inhibitor Complex (Bpo)
pdb|1GJ6|A Chain A, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1N6X|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1N6Y|A Chain A, Rip-Phasing On Bovine Trypsin
pdb|1OYQ|A Chain A, Trypsin Inhibitor Complex
pdb|1O2H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O2O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2P|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Q|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2R|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2S|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2T|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2U|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2V|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2W|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2X|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Y|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O2Z|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O30|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O31|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O32|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O33|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O34|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O35|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O36|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O37|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O38|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O39|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3A|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3B|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3C|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3D|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3E|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3F|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3G|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3H|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3I|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3J|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3K|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3L|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3M|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1O3N|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1O3O|A Chain A, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-directed Serine Protease
Inhibitors
pdb|1NC6|A Chain A, Potent, Small Molecule Inhibitors Of Human Mast Cell
Tryptase. Anti-Asthmatic Action Of A Dipeptide-Based
Transition State Analogue Containing Benzothiazole
Ketone
pdb|1P2I|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2J|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2K|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OX1|A Chain A, Crystal Structure Of The Bovine Trypsin Complex With A
Synthetic 11 Peptide Inhibitor
pdb|1RXP|A Chain A, Structure Of Trypsin (Orthorhombic) With 1-(4-Tert-
Butylcarbamoyl- Piperazine-1-Carbonyl)-3-(3-Guanidino-
Propyl)-4-Oxo-Azetidine-2-Carboxylic Acid
pdb|1S0Q|A Chain A, Native Bovine Pancreatic Trypsin
pdb|1S0R|A Chain A, Bovine Pancreatic Trypsin Inhibited With Benzamidine At
Atomic Resolution
pdb|2A7H|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|1TX7|A Chain A, Bovine Trypsin Complexed With P-
Amidinophenylmethylphosphinic Acid (Ampa)
pdb|2BLV|A Chain A, Trypsin Before A High Dose X-Ray "burn"
pdb|2BLW|A Chain A, Trypsin After A High Dose X-Ray "burn"
pdb|1TX8|A Chain A, Bovine Trypsin Complexed With Amso
pdb|1Y3U|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3V|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3W|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3X|A Chain A, Trypsin Inhibitor Complex
pdb|1Y3Y|A Chain A, Trypsin Inhibitor Complex
pdb|1YP9|A Chain A, Trypsin Inhibitor Complex
pdb|2AYW|A Chain A, Crystal Structure Of The Complex Formed Between Trypsin
And A Designed Synthetic Highly Potent Inhibitor In The
Presence Of Benzamidine At 0.97 A Resolution
pdb|2FI3|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser,
Cys38->ser) In Complex With Trypsin
pdb|2FX4|A Chain A, Bovine Trypsin Bound By 4-piperidinebutyrate To Make
Acylenzyme Complex
pdb|2FX6|A Chain A, Bovine Trypsin Complexed With 2-Aminobenzamidazole
pdb|2AGE|X Chain X, Succinyl-Aapr-Trypsin Acyl-Enzyme At 1.15 A Resolution
pdb|2AGG|X Chain X, Succinyl-Aapk-Trypsin Acyl-Enzyme At 1.28 A Resolution
pdb|2AGI|X Chain X, The Leupeptin-Trypsin Covalent Complex At 1.14 A
Resolution
pdb|2AH4|X Chain X, Guanidinobenzoyl-Trypsin Acyl-Enzyme At 1.13 A Resolution
pdb|2G5N|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G5V|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2G8T|A Chain A, Indole-Amidine Complexes With Bovine Trypsin
pdb|2F3C|E Chain E, Crystal Structure Of Infestin 1, A Kazal-Type
Serineprotease Inhibitor, In Complex With Trypsin
pdb|2G81|E Chain E, Crystal Structure Of The Bowman-Birk Inhibitor From Vigna
Unguiculata Seeds In Complex With Beta-Trypsin At 1.55
Angstrons Resolution
pdb|2G55|A Chain A, Anomalous Substructure Of Trypsin (P3121)
pdb|2OTV|A Chain A, Crystal Structure Of The Complex Formed Between Bovine
Trypsin And Nicotinamide At 1.56 A Resolution
pdb|2J9N|A Chain A, Robotically Harvested Trypsin Complexed With Benzamidine
Containing Polypeptide Mediated Crystal Contacts
pdb|2OXS|A Chain A, Crytal Structure Of The Trypsin Complex With Benzamidine
At High Temperature (35 C)
pdb|2UUY|A Chain A, Structure Of A Tick Tryptase Inhibitor In Complex With
Bovine Trypsin
pdb|2ILN|A Chain A, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2ILN|B Chain B, Crystal Structure Of The Bowman-Birk Inhibitor From Snail
Medic Seeds In Complex With Bovine Trypsin
pdb|2CMY|A Chain A, Crystal Complex Between Bovine Trypsin And Veronica
Hederifolia Trypsin Inhibitor
pdb|1AQ7|A Chain A, Trypsin With Inhibitor Aeruginosin 98-b
pdb|1AUJ|A Chain A, Bovine Trypsin Complexed To Meta-Cyano-Benzylic Inhibitor
pdb|1AZ8|A Chain A, Bovine Trypsin Complexed To Bis-Phenylamidine Inhibitor
pdb|1BJU|A Chain A, Beta-Trypsin Complexed With Acpu
pdb|1BJV|A Chain A, Beta-Trypsin Complexed With Appu
pdb|1GBT|A Chain A, Structure Of An Acyl-Enzyme Intermediate During Catalysis:
(Guanidinobenzoyl) Trypsin
pdb|1MAX|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MAY|A Chain A, Beta-Trypsin Phosphonate Inhibited
pdb|1MTS|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTU|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTV|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1MTW|A Chain A, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin
pdb|1TLD|A Chain A, Crystal Structure Of Bovine Beta-Trypsin At 1.5 Angstroms
Resolution In A Crystal Form With Low Molecular Packing
Density. Active Site Geometry, Ion Pairs And Solvent
Structure
pdb|1TPO|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPP|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|1TPS|A Chain A, Atomic Structure Of The Trypsin-A90720a Complex: A Unified
Approach To Structure And Function
pdb|1TYN|A Chain A, Atomic Structure Of The Trypsin-cyclotheonamide A Complex:
Lessons For The Design Of Serine Protease Inhibitors
pdb|1XUF|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUG|A Chain A, Trypsin-Babim-Zn+2, Ph 8.2
pdb|1XUH|A Chain A, Trypsin-Keto-Babim-Co+2, Ph 8.2
pdb|1XUI|A Chain A, Trypsin-Keto-Babim, Zn+2-Free, Ph 8.2
pdb|1XUJ|A Chain A, Trypsin-Keto-Babim-Zn+2, Ph 8.2
pdb|1XUK|A Chain A, Trypsin-Babim-Sulfate, Ph 5.9
pdb|2PLX|A Chain A, Trypsin Complexed To A Synthetic Peptide From Veronica
Hederifolia
pdb|2PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|3PTB|A Chain A, The Geometry Of The Reactive Site And Of The Peptide
Groups In Trypsin, Trypsinogen And Its Complexes With
Inhibitors
pdb|3PTN|A Chain A, On The Disordered Activation Domain In Trypsinogen.
Chemical Labelling And Low-Temperature Crystallography
pdb|1C1N|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1O|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1P|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1Q|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1R|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1T|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2D|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2E|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2F|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2G|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2H|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2I|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2J|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2K|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2L|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C2M|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5P|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Q|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5R|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5S|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5T|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5U|A Chain A, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5V|A Chain A, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GHZ|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI0|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI1|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI2|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI3|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI4|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI5|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI6|A Chain A, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2O9Q|A Chain A, The Crystal Structure Of Bovine Trypsin Complexed With A
Small Inhibition Peptide Orb2k
pdb|2QN5|T Chain T, Crystal Structure And Functional Study Of The Bowman-Birk
Inhibitor From Rice Bran In Complex With Bovine Trypsin
pdb|2QYI|A Chain A, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2QYI|C Chain C, Crystal Structure Of A Binary Complex Between An
Engineered Trypsin Inhibitor And Bovine Trypsin
pdb|2ZDK|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDL|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDM|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZDN|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFS|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZFT|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZHD|A Chain A, Exploring Trypsin S3 Pocket
pdb|3D65|E Chain E, Crystal Structure Of Textilinin-1, A Kunitz-Type Serine
Protease Inhibitor From The Australian Common Brown
Snake Venom, In Complex With Trypsin
pdb|3E8L|A Chain A, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|3E8L|B Chain B, The Crystal Structure Of The Double-Headed Arrowhead
Protease Inhibitor A In Complex With Two Trypsins
pdb|2ZQ1|A Chain A, Exploring Trypsin S3 Pocket
pdb|2ZQ2|A Chain A, Exploring Trypsin S3 Pocket
pdb|3ITI|A Chain A, Structure Of Bovine Trypsin With The Mad Triangle B3c
pdb|3GY2|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY3|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY4|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY5|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY6|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Bis-Benzamidines Diminazene And Pentamidine
pdb|3GY7|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3GY8|A Chain A, A Comparative Study On The Inhibition Of Bovine
Beta-Trypsin Benzamidines Diminazene And Pentamidine By
X-Ray Crystallog Itc
pdb|3AAS|A Chain A, Bovine Beta-Trypsin Bound To Meta-Guanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAU|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diguanidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|A Chain A, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3AAV|B Chain B, Bovine Beta-Trypsin Bound To Meta-Diamidino Schiff Base
Copper (Ii) Chelate
pdb|3M35|A Chain A, Trypsin In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3MFJ|A Chain A, Bovine Trypsin At 0.8 A Resolution, Restrained Refinement
pdb|3MI4|A Chain A, Bovine Trypsin At 0.8 A Resolution, Non-Restrained
Refinemen
pdb|3I29|A Chain A, Crystal Structure Of A Binary Complex Between An Mutant
Tryp Inhibitor With Bovine Trypsin
pdb|3A7T|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide
pdb|3A7V|A Chain A, Crystal Structure Of Trypsin Complexed With
3-Formylbenzimidamide
pdb|3A7W|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((Tetrahydro-2h-
Pyran-2-Yloxyimino)methyl)benzimidamide (Soaking 4hours)
pdb|3A7X|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
45seconds)
pdb|3A7Y|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
3-Yloxyimino)methyl)benzimidamide (Soaking 2hours)
pdb|3A7Z|A Chain A, Crystal Structure Of Trypsin Complexed With
(E)-4-((1-Methylpiperidin-
4-Yloxyimino)methyl)benzimidamide (Soaking 3hours)
pdb|3A80|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic Acid
(Soaking 40seconds)
pdb|3A81|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 8
Hours)
pdb|3A82|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid
pdb|3A83|A Chain A, Crystal Structure Of Trypsin Complexed With
Pre-Synthesized (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide
pdb|3A84|A Chain A, Crystal Structure Of Trypsin Complexed With(E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 5
Seconds)
pdb|3A85|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 15
Seconds)
pdb|3A86|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking 30
Seconds)
pdb|3A87|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 5
Minutes)
pdb|3A88|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 30
Minutes)
pdb|3A89|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((2-
Nicotinoylhydrazono)methyl)benzimidamide (Soaking 4
Hours)
pdb|3A8A|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Formylbenzimidamide And Aniline
pdb|3A8B|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-4-((4-
Bromophenylimino)methyl)benzimidamide
pdb|3A8C|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Soaking
With Mixture Of
[(E)-2-(4-Carbamimidoylbenzylideneaminooxy)acetic Acid]
And [(E)-2-
(4-Carbamimidoylbenzylideneaminooxy)-2-Methylpropanoic
Acid])
pdb|3A8D|A Chain A, Crystal Structure Of Trypsin Complexed With (E)-2-(4-
Carbamimidoylbenzylideneaminooxy)acetic Acid (Under
Aniline-Free Condition)
pdb|3LJJ|A Chain A, Bovine Trypsin In Complex With Ub-Thr 10
pdb|3LJO|A Chain A, Bovine Trypsin In Complex With Ub-Thr 11
pdb|2XTT|B Chain B, Bovine Trypsin In Complex With Evolutionary Enhanced
Schistocerca Gregaria Protease Inhibitor 1 (Sgpi-1-P02)
pdb|3NK8|A Chain A, Trypsin In Complex With Fluorine-Containing Fragment
pdb|3NKK|A Chain A, Trypsin In Complex With Fluorine Containing Fragment
pdb|3M7Q|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Pancreatic Trypsin
pdb|3RDZ|A Chain A, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3RDZ|B Chain B, Crystal Structure Of Rbti-Trypsin Complex At 2.26 Angstrom
Resolution
pdb|3ATI|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3ATK|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3ATL|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamidine
pdb|3ATM|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXA|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine
pdb|3RXB|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobutanoic Acid
pdb|3RXC|A Chain A, Crystal Structure Of Trypsin Complexed With
2-Aminopyridine
pdb|3RXD|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine
pdb|3RXE|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide
pdb|3RXF|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminopyridine
pdb|3RXG|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Aminocyclohexanol
pdb|3RXH|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Imidazol-4-Yl) Ethanamine
pdb|3RXI|A Chain A, Crystal Structure Of Trypsin Complexed With
2-(1h-Indol-3-Yl) Ethanamine
pdb|3RXJ|A Chain A, Crystal Structure Of Trypsin Complexed With
4-Guanidinobenzoic Acid
pdb|3RXK|A Chain A, Crystal Structure Of Trypsin Complexed With Methyl
4-Amino-1-Methyl- Pyrrolidine-2-Carboxylate
pdb|3RXL|A Chain A, Crystal Structure Of Trypsin Complexed With
(2,5-Dimethyl-3-Furyl) Methanamine
pdb|3RXM|A Chain A, Crystal Structure Of Trypsin Complexed With
[2-(2-Thienyl)thiazol-4- Yl]methanamine
pdb|3RXO|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Pyrrol-1-Ylphenyl) Methanamine
pdb|3RXP|A Chain A, Crystal Structure Of Trypsin Complexed With
(1,5-Dimethylpyrazol-3- Yl)methanamine
pdb|3RXQ|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F01
And F05, Cocktail Experiment)
pdb|3RXR|A Chain A, Crystal Structure Of Trypsin Complexed With
Cycloheptanamine (F01 And F03, Cocktail Experiment)
pdb|3RXS|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamine (F04 And A06, Cocktail
Experiment)
pdb|3RXT|A Chain A, Crystal Structure Of Trypsin Complexed With
(3-Methoxyphenyl) Methanamin (F04 And F03, Cocktail
Experiment)
pdb|3RXU|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And A06, Cocktail Experiment)
pdb|3RXV|A Chain A, Crystal Structure Of Trypsin Complexed With Benzamide (F05
And F03, Cocktail Experiment)
pdb|3T25|A Chain A, Tmao-Grown Orthorhombic Trypsin (Bovine)
pdb|3T26|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Sarcosine
pdb|3T27|A Chain A, Orthorhombic Trypsin (Bovine) In The Presence Of Betaine
pdb|3T28|A Chain A, Tmao-Grown Trypsin (Bovine)-Previously Unreported
Tetragonal Crystal Form
pdb|3T29|A Chain A, Tmao-Grown Trigonal Trypsin (Bovine)
pdb|4AB8|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4AB9|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABA|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABB|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABD|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABE|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABF|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABG|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABH|A Chain A, Fragments Bound To Bovine Trypsin For The Sampl Challenge
pdb|4ABI|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Pta)sfti-1(1,14), That Was 1,4-
Disubstituted With A 1,2,3-Trizol To Mimic A Trans Amide
Bond
pdb|4ABJ|A Chain A, Co-Complex Structure Of Bovine Trypsin With A Modified
Bowman-Birk Inhibitor (Ica)sfti-1(1,14), That Was 1,5-
Disubstituted With 1,2,3-Trizol To Mimic A Cis Amide
Bond
pdb|3VPK|A Chain A, Crystal Structure Of 6-guanidinohexanoyl Trypsin
pdb|3UNR|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Trypsin At 1.2a Resolution
pdb|3RU4|T Chain T, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
pdb|1C1S|A Chain A, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|4I8G|A Chain A, Bovine Trypsin At 0.8 Resolution
pdb|4I8H|A Chain A, Bovine Trypsin At 0.75 Resolution
pdb|4I8J|A Chain A, Bovine Trypsin At 0.87 A Resolution
pdb|4I8K|A Chain A, Bovine Trypsin At 0.85 Resolution
pdb|4I8L|A Chain A, Bovine Trypsin At 0.87 Resolution
pdb|4AOQ|A Chain A, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|B Chain B, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOQ|C Chain C, Cationic Trypsin In Complex With Mutated Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii) (f14a)
pdb|4AOR|A Chain A, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|B Chain B, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
pdb|4AOR|C Chain C, Cationic Trypsin In Complex With The Spinacia Oleracea
Trypsin Inhibitor Iii (soti-iii)
Length = 223
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In
Complex With Trypsin
pdb|2FTL|E Chain E, Crystal Structure Of Trypsin Complexed With Bpti At 100k
Length = 223
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO
Determine The Conformational Dynamics Of Trypsin
Length = 223
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 101/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLIDSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + L + + SG+G
Sbjct: 71 IVHPSY--DSNTLNNDIMLIKLKSAASLDSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI +V++AAHC S +
Sbjct: 24 FCGGSLIDSQWVVSAAHCYKSGI 46
>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
pdb|1DLK|D Chain D, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To
A Peptidyl Chloromethyl Ketone Inhibitor
Length = 230
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ N+V+TAAHC + V G + S S + I ++ + N
Sbjct: 26 FCGGSLINENWVVTAAHC---GVTTSDVVVAGEFDQGSSS--EKIQKLKIAKVFKNSKYN 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
+ +DI LLK++ FS+T+ CL A + T + +G+G Y + RL
Sbjct: 81 SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRL 140
Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
+ L +++N C K T I + +CA A G +C GDSGGPL + + ++G
Sbjct: 141 QQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTLVG 196
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
I S+G +TP +Y RV+ V W+ T+
Sbjct: 197 IVSWGSSTCSTSTPGVYARVTALVNWVQQTL 227
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+ G A G +P Q V ++ G FCGGSLI+ N+V+TAAHC
Sbjct: 1 IVNGEEAVPGSWPWQ--VSLQDKTGFH-----FCGGSLINENWVVTAAHC 43
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 36 IHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIAS 93
I +V +N + + T +DI LLK++ FS+T+ CL A + T + +
Sbjct: 70 IAKVFKNSKYNSLTIN-----NDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTT 124
Query: 94 GFGKLNYFECTQYSKIQDES 113
G+G Y ++Q S
Sbjct: 125 GWGLTRYTNANTPDRLQQAS 144
>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 243
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 44 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 90
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 91 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 148
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGD+GGP+ +
Sbjct: 149 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDAGGPV------V 202
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 203 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 240
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 44 FCGGSLINSQWVVSAAHCYKSGI 66
>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi
pdb|1ZR0|A Chain A, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
pdb|1ZR0|C Chain C, Crystal Structure Of Kunitz Domain 1 Of Tissue Factor
Pathway Inhibitor-2 With Bovine Trypsin
Length = 223
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I++ +C S + S+ CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSTSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|2CGA|B Chain B, Bovine Chymotrypsinogen A. X-Ray Crystal Structure
Analysis And Refinement Of A New Crystal Form At 1.8
Angstroms Resolution
pdb|1ACB|E Chain E, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1CGI|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1CGJ|E Chain E, Three-Dimensional Structure Of The Complexes Between
Bovine ChymotrypsinogenA And Two Recombinant Variants Of
Human Pancreatic Secretory Trypsin Inhibitor
(Kazal-Type)
pdb|1EX3|A Chain A, Crystal Structure Of Bovine Chymotrypsinogen A
(Tetragonal)
pdb|1GL1|A Chain A, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|B Chain B, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL1|C Chain C, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-C, An Inhibitor From The Insect Locusta
Migratoria
pdb|1GL0|E Chain E, Structure Of The Complex Between Bovine Alpha-Chymotrypsin
And Pmp-D2v, An Inhibitor From The Insect Locusta
Migratoria
pdb|1K2I|1 Chain 1, Crystal Structure Of Gamma-Chymotrypsin In Complex With 7-
Hydroxycoumarin
pdb|1P2M|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2M|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2N|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2O|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|A Chain A, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1P2Q|C Chain C, Structural Consequences Of Accommodation Of Four Non-
Cognate Amino-Acid Residues In The S1 Pocket Of Bovine
Trypsin And Chymotrypsin
pdb|1OXG|A Chain A, Crystal Structure Of A Complex Formed Between Organic
Solvent Treated Bovine Alpha-Chymotrypsin And Its
Autocatalytically Produced Highly Potent 14-Residue
Peptide At 2.2 Resolution
pdb|1T7C|A Chain A, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T7C|C Chain C, Crystal Structure Of The P1 Glu Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|A Chain A, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8L|C Chain C, Crystal Structure Of The P1 Met Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|A Chain A, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8M|C Chain C, Crystal Structure Of The P1 His Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|A Chain A, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8N|C Chain C, Crystal Structure Of The P1 Thr Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|A Chain A, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1T8O|C Chain C, Crystal Structure Of The P1 Trp Bpti Mutant- Bovine
Chymotrypsin Complex
pdb|1CHG|A Chain A, Chymotrypsinogen,2.5 Angstroms Crystal Structure,
Comparison With Alpha-Chymotrypsin,And Implications For
Zymogen Activation
pdb|1GCD|A Chain A, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2Y6T|A Chain A, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|B Chain B, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|C Chain C, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|2Y6T|D Chain D, Molecular Recognition Of Chymotrypsin By The Serine
Protease Inhibitor Ecotin From Yersinia Pestis
pdb|3T62|A Chain A, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|B Chain B, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
pdb|3T62|C Chain C, Crystal Structure Of Recombinant Kunitz Type Serine
Protease Inhibitor-1 From The Caribbean Sea Anemone
Stichodactyla Helianthus In Complex With Bovine
Chymotrypsin
Length = 245
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 104/211 (49%), Gaps = 12/211 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ N+V+TAAHC + V G + S S + I ++ + N
Sbjct: 41 FCGGSLINENWVVTAAHC---GVTTSDVVVAGEFDQGSSS--EKIQKLKIAKVFKNSKYN 95
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
+ +DI LLK++ FS+T+ CL A + T + +G+G Y + RL
Sbjct: 96 SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRL 155
Query: 399 MKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
+ L +++N C K T I + +CA A G +C GDSGGPL + + ++G
Sbjct: 156 QQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTLVG 211
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
I S+G +TP +Y RV+ V W+ T+
Sbjct: 212 IVSWGSSTCSTSTPGVYARVTALVNWVQQTL 242
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 188 AMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
+ I+ G A G +P Q V ++ G FCGGSLI+ N+V+TAAHC
Sbjct: 12 GLSRIVNGEEAVPGSWPWQ--VSLQDKTGFH-----FCGGSLINENWVVTAAHC 58
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 36 IHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIAS 93
I +V +N + + T +DI LLK++ FS+T+ CL A + T + +
Sbjct: 85 IAKVFKNSKYNSLTIN-----NDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTT 139
Query: 94 GFGKLNYFECTQYSKIQDES 113
G+G Y ++Q S
Sbjct: 140 GWGLTRYTNANTPDRLQQAS 159
>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution
pdb|1PQA|A Chain A, Trypsin With Pmsf At Atomic Resolution
Length = 224
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 107/201 (53%), Gaps = 16/201 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
+CGGSL++ N V+TAAHC++ +R G +++ S +T ++ V +HP+Y
Sbjct: 25 WCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSY--- 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
+ +D+A+LK++ + + A L + + V +A +G+G + + + L
Sbjct: 79 -SGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNL 137
Query: 399 MKVVLDIINNDTCSKQ-ETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
+KV + I++ TC Q T+ I++Q+ CA V +GGKD+CQGD GGP+ L I
Sbjct: 138 LKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDXGGPIVDSSNTL-----I 192
Query: 457 GITSYGRQCGHANTPAIYTRV 477
G S+G C N +Y V
Sbjct: 193 GAVSWGNGCARPNYSGVYASV 213
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC++ +R G +++ S +T ++ V +HP+Y + +D+A+LK++
Sbjct: 39 AAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVR---VHPSY----SGNNNDLAILKLS 91
Query: 66 PPVEFSETLKPACLNRAHN--VKSPTAIASGFG 96
+ + A L + + V +A +G+G
Sbjct: 92 TSIPSGGNIGYARLAASGSDPVAGSSATVAGWG 124
>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
pdb|2F9N|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN
Length = 245
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 275 MKDVKW--FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
++D W FCGGSLI P +V+TAAHC+ + +R L + Y D + V + I
Sbjct: 20 VRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLY-YQDQLLPVSRII 78
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYF 390
+HP + T DIALL++ PV S + L A P +G+G +
Sbjct: 79 VHPQFYIIQTGA--DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV--- 133
Query: 391 DTKESLR----LMKVVLDIINNDTCSKQ---------ETTLI-SSQLCATVMAGGKDTCQ 436
D E L L +V + I+ N C + + +I LCA +D+CQ
Sbjct: 134 DNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCQ 191
Query: 437 GDSGGPLQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
GDSGGPL +C N G+ S+G C N P IYTRV+YY+ WI H V
Sbjct: 192 GDSGGPL------VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ + +R L + Y D + V + I+HP + T DIALL++
Sbjct: 42 AAHCVGPDVKDLATLRVQLREQHLY-YQDQLLPVSRIIVHPQFYIIQTGA--DIALLELE 98
Query: 66 PPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFE 102
PV S + L A P +G+G ++ E
Sbjct: 99 EPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDE 137
>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of
Prophenoloxidase Activating Factor-I In A Zymogen Form
Length = 278
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 35/238 (14%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPL----GKPRYVRFGLITKLSYSVTDNIHRVM----- 329
++ CGGSLI+ Y++TAAHC+ + G VR G + RV
Sbjct: 50 QFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKP 109
Query: 330 ------QNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV----KSPTA 379
+ I HP+Y +YHDIAL+++ VEF+ ++P CL + + + T
Sbjct: 110 IDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTV 169
Query: 380 IASGFGKLNYFDTKESLRLMKVVLDIINNDTCSK----QETTLISSQLCATVMAGG---K 432
+ G + + T + K+ + +++ + C+K + SSQLC AGG K
Sbjct: 170 VGWGRTETGQYSTIK----QKLAVPVVHAEQCAKTFGAAGVRVRSSQLC----AGGEKAK 221
Query: 433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
D+C GDSGGPL + + + G+ S+G CG P IYT+V Y WI + P
Sbjct: 222 DSCGGDSGGPLLAERANQQFF-LEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNIRP 278
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 39 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL---NRAHNVKSPTAIASGF 95
+ + I HP+Y +YHDIAL+++ VEF+ ++P CL N V + G+
Sbjct: 114 IEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVV-GW 172
Query: 96 GKLNYFECTQYSKIQDESPIALAPALVGGVRYVKTQCDILAMPMIIGGSRAK 147
G+ E QYS I+ + + + A + + + + GG +AK
Sbjct: 173 GRT---ETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKAK 221
>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase)
Length = 223
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + GGKD+CQGD GGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDXGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor
pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
Inhibitor At 1.56 A Resolution
Length = 223
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 16/210 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG LI P +V+TAAHC L V G + V++ ++HP+Y +
Sbjct: 25 LCGGVLIHPLWVLTAAHCKKPNL----QVFLGKHNLRQRESSQEQSSVVRAVIHPDY--D 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
S DI LL++A P + SE ++P L R + + + G+GK D ++++
Sbjct: 79 AASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGDFPDTIQCAY 138
Query: 401 VVLDIINNDTCSKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ L ++ + C I+ LCA GKD+CQGDSGGPL +C ++ G+
Sbjct: 139 IHL--VSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL------VCGDHLRGLV 190
Query: 460 SYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
S+G CG P +YT V Y WI T+
Sbjct: 191 SWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 224 FCGGSLISPNYVMTAAHCITSPLVGTMVKAPLR 256
CGG LI P +V+TAAHC L + K LR
Sbjct: 25 LCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLR 57
>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|B Chain B, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|C Chain C, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2BM2|D Chain D, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl-
Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)-
Methanone
pdb|2FWW|A Chain A, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|B Chain B, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|C Chain C, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FWW|D Chain D, Human Beta-Tryptase Ii Complexed With 4-Piperidinebutyrate
To Make Acylenzyme
pdb|2FXR|A Chain A, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|B Chain B, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|C Chain C, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FXR|D Chain D, Human Beta Tryptase Ii Complexed With Activated Ketone
Inhibitor Cra-29382
pdb|2FPZ|A Chain A, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|B Chain B, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|C Chain C, Human Tryptase With 2-Amino Benzimidazole
pdb|2FPZ|D Chain D, Human Tryptase With 2-Amino Benzimidazole
pdb|2FS8|A Chain A, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|B Chain B, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|C Chain C, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS8|D Chain D, Human Beta-Tryptase Ii With Inhibitor Cra-29382
pdb|2FS9|A Chain A, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|B Chain B, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|C Chain C, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2FS9|D Chain D, Human Beta Tryptase Ii With Inhibitor Cra-28427
pdb|2GDD|A Chain A, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|B Chain B, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|C Chain C, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2GDD|D Chain D, Human Beta Ii Tryptase With Inhibitor Cra-27592
pdb|2ZA5|A Chain A, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|B Chain B, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|C Chain C, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|2ZA5|D Chain D, Crystal Structure Of Human Tryptase With Potent
Non-Peptide Inhibitor
pdb|4A6L|A Chain A, Beta-Tryptase Inhibitor
pdb|4A6L|B Chain B, Beta-Tryptase Inhibitor
pdb|4A6L|C Chain C, Beta-Tryptase Inhibitor
pdb|4A6L|D Chain D, Beta-Tryptase Inhibitor
pdb|3V7T|A Chain A, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|B Chain B, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|C Chain C, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
pdb|3V7T|D Chain D, Crystal Structure Of Human Beta-Tryptase Complexed With A
Synthetic Inhibitor With A Tropanylamide Scaffold
Length = 245
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI P +V+TAAHC+ + +R L + Y D + V + I+HP + T
Sbjct: 28 FCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLY-YQDQLLPVSRIIVHPQFYTA 86
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLR- 397
DIALL++ PV+ S + L A P +G+G + D E L
Sbjct: 87 QIGA--DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV---DNDERLPP 141
Query: 398 ---LMKVVLDIINNDTCSKQ---------ETTLISSQ-LCATVMAGGKDTCQGDSGGPLQ 444
L +V + I+ N C + + ++ LCA +D+CQGDSGGPL
Sbjct: 142 PFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPL- 198
Query: 445 TIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+C N G+ S+G C N P IYTRV+YY+ WI H V
Sbjct: 199 -----VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCI 242
I+GG A ++P Q + + W FCGGSLI P +V+TAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSL-------RVHGPYWMHFCGGSLIHPQWVLTAAHCV 46
>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|B Chain B, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|C Chain C, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
pdb|1A0L|D Chain D, Human Beta-Tryptase: A Ring-Like Tetramer With Active
Sites Facing A Central Pore
Length = 244
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI P +V+TAAHC+ + +R L + Y D + V + I+HP + T
Sbjct: 28 FCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLY-YQDQLLPVSRIIVHPQFYTA 86
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLR- 397
DIALL++ PV+ S + L A P +G+G + D E L
Sbjct: 87 QIGA--DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV---DNDERLPP 141
Query: 398 ---LMKVVLDIINNDTCSKQ---------ETTLISSQ-LCATVMAGGKDTCQGDSGGPLQ 444
L +V + I+ N C + + ++ LCA +D+CQGDSGGPL
Sbjct: 142 PFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPL- 198
Query: 445 TIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+C N G+ S+G C N P IYTRV+YY+ WI H V
Sbjct: 199 -----VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCI 242
I+GG A ++P Q + + W FCGGSLI P +V+TAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSL-------RVHGPYWMHFCGGSLIHPQWVLTAAHCV 46
>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEB|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|B Chain B, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|C Chain C, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
pdb|2ZEC|D Chain D, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase
Length = 243
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI P +V+TAAHC+ + +R L + Y D + V + I+HP + T
Sbjct: 28 FCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLY-YQDQLLPVSRIIVHPQFYTA 86
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESLR- 397
DIALL++ PV+ S + L A P +G+G + D E L
Sbjct: 87 QIGA--DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDV---DNDERLPP 141
Query: 398 ---LMKVVLDIINNDTCSKQ---------ETTLISSQ-LCATVMAGGKDTCQGDSGGPLQ 444
L +V + I+ N C + + ++ LCA +D+CQGDSGGPL
Sbjct: 142 PFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDSCQGDSGGPL- 198
Query: 445 TIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+C N G+ S+G C N P IYTRV+YY+ WI H V
Sbjct: 199 -----VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCI 242
I+GG A ++P Q + + W FCGGSLI P +V+TAAHC+
Sbjct: 1 IVGGQEAPRSKWPWQVSL-------RVHGPYWMHFCGGSLIHPQWVLTAAHCV 46
>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PWC|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3PYH|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex
With Small Molecule Inhibitor
pdb|3Q00|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Comlex
With Small Molecule Inhibitor
Length = 223
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P IYT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLB|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PLP|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
pdb|3PM3|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P IYT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between
Salmon And Bovine Trypsins
Length = 222
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC S + VR G + + VT+ + + + I HPNY
Sbjct: 24 FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ P + ++P L + SG+G T +S +
Sbjct: 77 SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN-TMSSTADSDK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 134 LQCLNIPILSYSDCNDSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFSDWLTSTM 219
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
I+GG K HQ ++ FCGGSL++ N+V++AAHC S
Sbjct: 1 IVGGYECKAYSQAHQV---------SLNSGYHFCGGSLVNENWVVSAAHCYKS 44
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNYTTEGTSQYHDIALL 62
AAHC S + VR G + + VT+ + + + I HPNY++ +DI L+
Sbjct: 38 AAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNYSSYNID--NDIMLI 88
Query: 63 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
K++ P + ++P L + SG+G
Sbjct: 89 KLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN 123
>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine
Trypsin Variant X(Triple.Glu)bt.D2
pdb|1V2L|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.D1
pdb|1V2M|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Triple.Glu)bt.A1
Length = 223
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9O|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g
pdb|2F9P|A Chain A, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|B Chain B, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|C Chain C, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
pdb|2F9P|D Chain D, Crystal Structure Of The Recombinant Human Alpha I
Tryptase Mutant D216g In Complex With Leupeptin
Length = 245
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 110/236 (46%), Gaps = 36/236 (15%)
Query: 275 MKDVKW--FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
++D W FCGGSLI P +V+TAAHC+ + +R L + Y D + V + I
Sbjct: 20 VRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLY-YQDQLLPVSRII 78
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYF 390
+HP + T DIALL++ PV S + L A P +G+G +
Sbjct: 79 VHPQFYIIQTGA--DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV--- 133
Query: 391 DTKESLR----LMKVVLDIINNDTCSKQ---------ETTLISSQ-LCATVMAGGKDTCQ 436
D E L L +V + I+ N C + + +I LCA +D+C+
Sbjct: 134 DNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCK 191
Query: 437 GDSGGPLQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
GDSGGPL +C N G+ S+G C N P IYTRV+YY+ WI H V
Sbjct: 192 GDSGGPL------VCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYV 241
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ + +R L + Y D + V + I+HP + T DIALL++
Sbjct: 42 AAHCVGPDVKDLATLRVQLREQHLY-YQDQLLPVSRIIVHPQFYIIQTGA--DIALLELE 98
Query: 66 PPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFE 102
PV S + L A P +G+G ++ E
Sbjct: 99 EPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDE 137
>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
Proneurosin
Length = 223
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 16/210 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG LI P +V+TAAHC L V G + V++ ++HP+Y +
Sbjct: 26 LCGGVLIHPLWVLTAAHCKKPNL----QVFLGKHNLRQQESSQEQSSVVRAVIHPDY--D 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
S DI LL++A P + SE ++P L R + ++ + G+GK D ++++
Sbjct: 80 AASHDQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHILGWGKTADGDFPDTIQCAY 139
Query: 401 VVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ L ++ + C I+ + LCA GKD+CQGDSGGPL +C ++ G+
Sbjct: 140 IHL--VSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL------VCGDHLRGLV 191
Query: 460 SYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
S+G CG P +YT V Y WI T+
Sbjct: 192 SWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 221
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 224 FCGGSLISPNYVMTAAHCITSPLVGTMVKAPLR 256
CGG LI P +V+TAAHC L + K LR
Sbjct: 26 LCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLR 58
>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTK|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTL|M Chain M, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
pdb|1UTM|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations,
X-Ray Structures And Association Constant Measurements
Length = 242
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC S + VR G + + VT+ + + + I HPNY
Sbjct: 44 FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 96
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ P + ++P L + SG+G T +S +
Sbjct: 97 SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN-TMSSTADSNK 153
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 154 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 207
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 208 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 239
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
I+GG K PHQ ++ FCGGSL++ N+V++AAHC S
Sbjct: 21 IVGGYECKPYSQPHQV---------SLNSGYHFCGGSLVNENWVVSAAHCYKS 64
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNYTTEGTSQYHDIALL 62
AAHC S + VR G + + VT+ + + + I HPNY++ +DI L+
Sbjct: 58 AAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNYSSYNID--NDIMLI 108
Query: 63 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
K++ P + ++P L + SG+G
Sbjct: 109 KLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN 143
>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A
Second Crystal Form
Length = 237
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC S + VR G + + VT+ + + + I HPNY
Sbjct: 39 FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 91
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ P + ++P L + SG+G T +S +
Sbjct: 92 SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN-TMSSTADSNK 148
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 149 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 202
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 203 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 234
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
I+GG K HQ ++ FCGGSL++ N+V++AAHC S
Sbjct: 16 IVGGYECKAYSQAHQV---------SLNSGYHFCGGSLVNENWVVSAAHCYKS 59
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNYTTEGTSQYHDIALL 62
AAHC S + VR G + + VT+ + + + I HPNY++ +DI L+
Sbjct: 53 AAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNYSSYNID--NDIMLI 103
Query: 63 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
K++ P + ++P L + SG+G
Sbjct: 104 KLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN 138
>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon
Length = 222
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC S + VR G + + VT+ + + + I HPNY
Sbjct: 24 FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ P + ++P L + SG+G T +S +
Sbjct: 77 SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN-TMSSTADSNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
I+GG K PHQ ++ FCGGSL++ N+V++AAHC S
Sbjct: 1 IVGGYECKAYSQPHQV---------SLNSGYHFCGGSLVNENWVVSAAHCYKS 44
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNYTTEGTSQYHDIALL 62
AAHC S + VR G + + VT+ + + + I HPNY++ +DI L+
Sbjct: 38 AAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNYSSYNID--NDIMLI 88
Query: 63 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
K++ P + ++P L + SG+G
Sbjct: 89 KLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN 123
>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex
With Bovine Pancreatic Trypsin Inhibitor
pdb|2STA|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (Cucurbita Maxima Trypsin Inhibitor I)
pdb|2STB|E Chain E, Anionic Salmon Trypsin In Complex With Squash Seed
Inhibitor (cucurbita Pepo Trypsin Inhibitor Ii)
Length = 222
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 109/212 (51%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC S + VR G + + VT+ + + + I HPNY
Sbjct: 24 FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ P + ++P L + SG+G T +S +
Sbjct: 77 SSYNID--NDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNT-MSSTADSNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
I+GG K PHQ ++ FCGGSL++ N+V++AAHC S
Sbjct: 1 IVGGYECKPYSQPHQV---------SLNSGYHFCGGSLVNENWVVSAAHCYKS 44
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNYTTEGTSQYHDIALL 62
AAHC S + VR G + + VT+ + + + I HPNY++ +DI L+
Sbjct: 38 AAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNYSSYNID--NDIMLI 88
Query: 63 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
K++ P + ++P L + SG+G
Sbjct: 89 KLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGN 123
>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin
Variant X(99175190)BT
Length = 223
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
Para-Amidobenzylanmine P1 Group Carry A High Binding
Efficiency
pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
Kallikrein 6 Inhibitors With An Amidinothiophene P1
Group
Length = 223
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 104/210 (49%), Gaps = 16/210 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG LI P +V+TAAHC L V G + V++ ++HP+Y +
Sbjct: 25 LCGGVLIHPLWVLTAAHCKKPNL----QVFLGKHNLGQQESSQEQSSVVRAVIHPDY--D 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
S DI LL++A P + SE ++P L R + ++ + G+GK D ++++
Sbjct: 79 AASHDQDIMLLRLARPAKLSELIQPLPLERDCSAQTTSCHILGWGKTADGDFPDTIQCAY 138
Query: 401 VVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ L ++ + C I+ + LCA GKD+CQGDSGGPL +C ++ G+
Sbjct: 139 IHL--VSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPL------VCGDHLRGLV 190
Query: 460 SYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
S+G CG P +YT V Y WI T+
Sbjct: 191 SWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 224 FCGGSLISPNYVMTAAHC 241
CGG LI P +V+TAAHC
Sbjct: 25 LCGGVLIHPLWVLTAAHC 42
>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSL++ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLLNSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P IYT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGIYTKVCNYVSWIKQTI 220
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSL++ +V++AAHC S +
Sbjct: 24 FCGGSLLNSQWVVSAAHCYKSGI 46
>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
pdb|2ZPR|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum
Salmon
Length = 222
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC S + VR G + + VT+ + + + I HPNY
Sbjct: 24 FCGGSLVNENWVVSAAHCYKSRVA----VRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ P + ++P L + SG+G T + +
Sbjct: 77 SSYNID--NDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGN-TMSSTADGDK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNYTTEGTSQYHDIALL 62
AAHC S + VR G + + VT+ + + + I HPNY++ +DI L+
Sbjct: 38 AAHCYKSRVA----VRLG---EHNIKVTEGSEQFISSSRVIRHPNYSSYNID--NDIMLI 88
Query: 63 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
K++ P + ++P L + SG+G
Sbjct: 89 KLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGN 123
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ E
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRE 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C + +I+ + C + GGKD CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDACQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai)
Bt.D1
pdb|1V2V|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssai)
Bt.C1
pdb|1V2W|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssai)bt.B4
Length = 223
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 35/220 (15%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TK--ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
T + L+ +K I+++ +C + +I+S + CA + GGKD+CQGDSGGP+
Sbjct: 129 TSYPDVLKCLKA--PILSDSSCKSASSAIITSNMFCAGYLEGGKDSCQGDSGGPV----- 181
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+C + GI S+G C N P +YT+V YV WI T+
Sbjct: 182 -VCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
pdb|4B2A|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tga) In Complex With Eglin C
Length = 223
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGD+GGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
Length = 255
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 281 FCGGSLISPNYVMTAAHCI---TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILH-PN 336
CGGSL+S ++V+TAAHC L + R + + + + V+ + + P
Sbjct: 25 LCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF 84
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKE 394
+DIAL+ ++ P+ +E ++P CL A V +G+G Y+ +
Sbjct: 85 RDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQA 144
Query: 395 SLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL--QTIMPD 449
+ L + + II+ND C+ + + CA GG D CQGDSGGP + +
Sbjct: 145 GV-LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISR 203
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ + GI S+G C A P +YT+VS + WI +
Sbjct: 204 TPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 242
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG G +P Q + + D CGGSL+S ++V+TAAHC
Sbjct: 1 IVGGRDTSLGRWPWQVSLRY--------DGAHLCGGSLLSGDWVLTAAHCF 43
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 57 HDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYF 101
+DIAL+ ++ P+ +E ++P CL A V +G+G Y+
Sbjct: 94 NDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYY 140
>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
pdb|1AO5|B Chain B, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme)
Length = 237
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 104/222 (46%), Gaps = 27/222 (12%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPNYTT 339
CGG L+ N+V+TAAHC +Y + KL HR V ++ HP +
Sbjct: 25 ICGGVLLDRNWVLTAAHCYVD-----QYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNM 79
Query: 340 E---------GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYF 390
G D+ LL+++ P + ++ +KP L +ASG+G +
Sbjct: 80 SLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPT 139
Query: 391 DTKESLRLMKVVLDIINNDTCSK---QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
++ L V + ++ N+ C+K Q+ T + LCA M GGKDTC+ DSGGPL
Sbjct: 140 RWQKPDDLQCVFITLLPNENCAKVYLQKVTDV--MLCAGEMGGGKDTCRDDSGGPL---- 193
Query: 448 PDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
+C + G TSYG CG PAIYT + + WI T+
Sbjct: 194 --ICDGILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 20/152 (13%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR-VMQNILHPNYTTE---------GTSQ 55
AAHC +Y + KL HR V ++ HP + G
Sbjct: 39 AAHCYVD-----QYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLMLQTIPPGADF 93
Query: 56 YHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFECTQYSKIQDESP- 114
D+ LL+++ P + ++ +KP L +ASG+G + T++ K D
Sbjct: 94 SDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITP---TRWQKPDDLQCV 150
Query: 115 -IALAPALVGGVRYVKTQCDILAMPMIIGGSR 145
I L P Y++ D++ +GG +
Sbjct: 151 FITLLPNENCAKVYLQKVTDVMLCAGEMGGGK 182
>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
Transmembrane Serine Protease Hepsin With Covalently
Bound Preferred Substrate
Length = 372
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 281 FCGGSLISPNYVMTAAHCI---TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILH-PN 336
CGGSL+S ++V+TAAHC L + R + + + + V+ + + P
Sbjct: 142 LCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF 201
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKE 394
+DIAL+ ++ P+ +E ++P CL A V +G+G Y+ +
Sbjct: 202 RDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQA 261
Query: 395 SLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL--QTIMPD 449
+ L + + II+ND C+ + + CA GG D CQGDSGGP + +
Sbjct: 262 GV-LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISR 320
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ + GI S+G C A P +YT+VS + WI +
Sbjct: 321 TPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 187 LAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
L + I+GG G +P Q + + D CGGSL+S ++V+TAAHC
Sbjct: 113 LPVDRIVGGRDTSLGRWPWQVSLRY--------DGAHLCGGSLLSGDWVLTAAHCF 160
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 57 HDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYF 101
+DIAL+ ++ P+ +E ++P CL A V +G+G Y+
Sbjct: 211 NDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYY 257
>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
An Inhibitory Antibody
Length = 372
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 281 FCGGSLISPNYVMTAAHCI---TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILH-PN 336
CGGSL+S ++V+TAAHC L + R + + + + V+ + + P
Sbjct: 142 LCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGGYLPF 201
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKE 394
+DIAL+ ++ P+ +E ++P CL A V +G+G Y+ +
Sbjct: 202 RDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQA 261
Query: 395 SLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL--QTIMPD 449
+ L + + II+ND C+ + + CA GG D CQGDSGGP + +
Sbjct: 262 GV-LQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISR 320
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ + GI S+G C A P +YT+VS + WI +
Sbjct: 321 TPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 187 LAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
L + I+GG G +P Q + + D CGGSL+S ++V+TAAHC
Sbjct: 113 LPVDRIVGGRDTSLGRWPWQVSLRY--------DGAHLCGGSLLSGDWVLTAAHCF 160
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 57 HDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYF 101
+DIAL+ ++ P+ +E ++P CL A V +G+G Y+
Sbjct: 211 NDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYY 257
>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
pdb|4B1T|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
( Ta) In Complex With Eglin C
Length = 223
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGD+GGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UOP|A Chain A, Bovine Trypsin Variant X(triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UQO|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri)
Bt.C1
pdb|1V2R|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssri)bt.B4
Length = 223
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 35/220 (15%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TK--ESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
T + L+ +K I+++ +C + +I+S + CA + GGKD+CQGDSGGP+
Sbjct: 129 TSYPDVLKCLKA--PILSDSSCKSASSRIITSNMFCAGYLEGGKDSCQGDSGGPV----- 181
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+C + GI S+G C N P +YT+V YV WI T+
Sbjct: 182 -VCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant
X(Ssfi.Glu)bt.D1
pdb|1V2T|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(ssfi.glu)bt.b4
Length = 223
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Sswi)bt.B4
Length = 223
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSWIITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
pdb|2ZPQ|B Chain B, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum
Salmon
Length = 222
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC S + VR G + + VT+ + + + I HPNY
Sbjct: 24 FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ P + ++P L + SG+G T + +
Sbjct: 77 SSYNID--NDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGN-TMSSTADKNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
I+GG K PHQ ++ FCGGSL++ N+V++AAHC S
Sbjct: 1 IVGGYECKAYSQPHQV---------SLNSGYHFCGGSLVNENWVVSAAHCYKS 44
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNYTTEGTSQYHDIALL 62
AAHC S + VR G + + VT+ + + + I HPNY++ +DI L+
Sbjct: 38 AAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNYSSYNID--NDIMLI 88
Query: 63 KIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
K++ P + ++P L + SG+G
Sbjct: 89 KLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGN 123
>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.B4
pdb|1V2P|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant
X(Ssyi)bt.A4
Length = 223
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSYIITSNMFCAGYLEGGKDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|B Chain B, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|D Chain D, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 251
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSYSVTDNIHR----------- 327
FCGGSL+ ++++TAAHC+ L P L++ + + H
Sbjct: 26 FCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHL 85
Query: 328 -VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 386
V LHP Y + + +D+AL+++ + + P CL + I SG+GK
Sbjct: 86 GVKHTTLHPQY--DPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGK 143
Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQ----ETTLISSQLCATVMAGGKDTCQGDSGGP 442
F + LM++ + I+++ TC K + + +CA GGKD C GDSGGP
Sbjct: 144 --QFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGP 201
Query: 443 LQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ T+ + + ++G S+G CG + +Y+ + + WI
Sbjct: 202 MVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 243
>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
pdb|4B2B|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tgpa) In Complex With Eglin C
Length = 223
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGD+GGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human
Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With
Vacant Active Site
Length = 238
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHP------ 335
CGG L+ +V+TAAHCI+ + G T V ++ HP
Sbjct: 26 CGGILVHRQWVLTAAHCISDNY----QLWLGRHNLFDDENTAQFVHVSESFPHPGFNMSL 81
Query: 336 --NYTTEGTSQY-HDIALLKIAPPVE-FSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
N+T + Y HD+ LL++ P + ++ +K L T +ASG+G + +
Sbjct: 82 LENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPEN 141
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISS-QLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
L V L I+ ND C K ++ LC + GGKDTC GDSGGPL +
Sbjct: 142 FSFPDDLQCVDLKILPNDECKKAHVQKVTDFMLCVGHLEGGKDTCVGDSGGPL------M 195
Query: 451 CMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
C + G+TS+G CG N P++ RV YV WI T+
Sbjct: 196 CDGVLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTI 234
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 225 CGGSLISPNYVMTAAHCITS 244
CGG L+ +V+TAAHCI+
Sbjct: 26 CGGILVHRQWVLTAAHCISD 45
>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
pdb|4B2C|C Chain C, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala
(Tpa) In Complex With Eglin C
Length = 223
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGD+GGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDAGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UPE|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
pdb|3UUZ|B Chain B, Bovine Trypsin Variant X(Triplephe227) In Complex With
Small Molecule Inhibitor
Length = 223
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + CA + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCAGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P YT++ YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCAQKNKPGFYTKLCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar
Spermatozoa
Length = 263
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 20/222 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLI---TKLSYSVTDNIHRVMQN------I 332
CGG L++ ++V+TAAHC + K + + LI ++ + + +Q I
Sbjct: 32 CGGILLNSHWVLTAAHCFKN---KKKVTDWRLIFGANEVVWGSNKPVKPPLQERFVEEII 88
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN--RAHNVKSP-TAIASGFGKLNY 389
+H Y + + +DIAL+KI PPV + P CL +A ++P T +G+G L
Sbjct: 89 IHEKYVS--GLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGWGYLKE 146
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGKDTCQGDSGGPLQTI 446
+ S L + + +I+ + C+ + S+ +CA G DTCQGDSGGPL
Sbjct: 147 KGPRTSPTLQEARVALIDLELCNSTRWYNGRIRSTNVCAGYPRGKIDTCQGDSGGPLMCR 206
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ ++GITS+G C A P +YT Y+ WI +
Sbjct: 207 DRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIASKI 248
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 39 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLN--RAHNVKSP-TAIASGF 95
V + I+H Y + + +DIAL+KI PPV + P CL +A ++P T +G+
Sbjct: 84 VEEIIIHEKYVS--GLEINDIALIKITPPVPCGPFIGPGCLPQFKAGPPRAPQTCWVTGW 141
Query: 96 GKL 98
G L
Sbjct: 142 GYL 144
>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii
Transmembrane Serine Proteinases Family
Length = 232
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CG +LI+ ++++AAHC T+ R+ FG+ K S + + R+ I+H Y +
Sbjct: 26 CGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKPS-KMKRGLRRI---IVHEKY--K 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKL-NYFDTKESLR 397
S +DI+L +++ PV ++ + CL A P + +GFG L N ++ LR
Sbjct: 80 HPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLR 139
Query: 398 LMKVVLDIINNDTCSKQET---TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
+V L I+ TC++ + + LCA + G D CQGDSGGPL + Y
Sbjct: 140 QAQVTL--IDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWY- 196
Query: 455 IIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G +C N P +YTRV+ WI
Sbjct: 197 LAGIVSWGDECAKPNKPGVYTRVTALRDWI 226
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 6 AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKI 64
AAHC T+ R+ FG+ K S + + R+ I+H Y + S +DI+L ++
Sbjct: 39 AAHCFTTYKNPARWTASFGVTIKPS-KMKRGLRRI---IVHEKY--KHPSHDYDISLAEL 92
Query: 65 APPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKL 98
+ PV ++ + CL A P + +GFG L
Sbjct: 93 SSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGAL 128
>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|B Chain B, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|C Chain C, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|D Chain D, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|E Chain E, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|F Chain F, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|G Chain G, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|H Chain H, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|I Chain I, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|J Chain J, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|K Chain K, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|L Chain L, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|M Chain M, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|N Chain N, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|O Chain O, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3UY9|P Chain P, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V12|A Chain A, Bovine Trypsin Variant X(tripleglu217phe227) In Complex
With Small Molecule Inhibitor
pdb|3V13|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 103/218 (47%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + C + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCVGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1LTO|A Chain A, Human Alpha1-Tryptase
pdb|1LTO|B Chain B, Human Alpha1-Tryptase
pdb|1LTO|C Chain C, Human Alpha1-Tryptase
pdb|1LTO|D Chain D, Human Alpha1-Tryptase
Length = 245
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 36/236 (15%)
Query: 275 MKDVKW--FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
++D W FCGGSLI P +V+TAAHC+ + +R L + Y D + V + I
Sbjct: 20 VRDRYWMHFCGGSLIHPQWVLTAAHCLGPDVKDLATLRVQLREQHLY-YQDQLLPVSRII 78
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYF 390
+HP + T DIALL++ PV S + L A P +G+G +
Sbjct: 79 VHPQFYIIQTGA--DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDV--- 133
Query: 391 DTKESLR----LMKVVLDIINNDTCSKQ---------ETTLI-SSQLCATVMAGGKDTCQ 436
D E L L +V + I+ N C + + +I LCA +D+C+
Sbjct: 134 DNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDSCK 191
Query: 437 GDSGGPLQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
GDSGGPL +C N G+ S+ C N P IYTRV+YY+ WI H V
Sbjct: 192 GDSGGPL------VCKVNGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWIHHYV 241
>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex
With Small Molecule Inhibitor
Length = 223
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y +E + +DI L+K+ + L + + SG+G
Sbjct: 71 IVHPSYNSE--TYNNDIMLIKLKSAASLXSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C + +I+S + C + GGKD CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSASSFIITSNMFCVGYLEGGKDACQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGEGCAQKNKPGFYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum
Salmon
Length = 222
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 108/212 (50%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC + + VR G + + VT+ + + + I HPNY
Sbjct: 24 FCGGSLVNENWVVSAAHCYKTRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ P + ++P L + SG+G T + +
Sbjct: 77 SSYNID--NDIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGNT-MSSTADKNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNNWLTSTM 219
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+GG K PHQ ++ FCGGSL++ N+V++AAHC
Sbjct: 1 IVGGYECKAYSQPHQV---------SLNSGYHFCGGSLVNENWVVSAAHC 41
>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity
Length = 228
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L++ +V++AAHC+ V G + + ++ V++ + HP+Y +
Sbjct: 25 LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDYQPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
HD+ LL+++ ++P R +P + +G+G +N+ + L
Sbjct: 85 TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
V+L +++ TC+++ + + +CA + +D+C+GDSGGPL +C +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDSGGPL------VCGGVL 193
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
G+ S+G R CG+ P IYTRV+ Y WI
Sbjct: 194 EGVVSWGSRVCGNRKKPGIYTRVASYAAWI 223
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ V G + + ++ V++ + HP+Y + HD+ LL+++
Sbjct: 39 AAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDYQPDTID--HDLLLLQLS 96
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNY 100
++P R +P + +G+G +N+
Sbjct: 97 EKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNH 133
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 22/222 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLG--KPRYVRFGLITKLSYSVTDNIHR----------- 327
FCGGSL+ ++++TAAHC+ L P L++ + + H
Sbjct: 181 FCGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHL 240
Query: 328 -VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 386
V LHP Y + + +D+AL+++ + + P CL + I SG+GK
Sbjct: 241 GVKHTTLHPQY--DPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWGK 298
Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQ----ETTLISSQLCATVMAGGKDTCQGDSGGP 442
F + LM++ + I+++ TC K + + +CA GGKD C GDSGGP
Sbjct: 299 --QFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGP 356
Query: 443 LQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ T+ + + ++G S+G CG + +Y+ + + WI
Sbjct: 357 MVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWI 398
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ E
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRE 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon
Length = 220
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---ILHPNY 337
FCGGSL++ N+V++AAHC S + VR G + + VT+ + + + I HPNY
Sbjct: 24 FCGGSLVNENWVVSAAHCYKSRV----EVRLG---EHNIKVTEGSEQFISSSRVIRHPNY 76
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
++ +DI L+K++ + ++P L + SG+G T + +
Sbjct: 77 SSYNID--NDIMLIKLSKSATLNTYVQPVALPSSCAPAGTMCTVSGWGNT-MSSTADKNK 133
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L + + I++ C+ +I++ + CA + GGKD+CQGDSGGP+ +C +
Sbjct: 134 LQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV------VCNGELQ 187
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G+ S+G C P +Y +V + W+ T+
Sbjct: 188 GVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTM 219
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 32 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 87
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 88 TLN--NDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 145
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 146 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 199
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin)
Length = 224
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLIS +V++AAHC + + VR G + ++ I HP Y +
Sbjct: 24 FCGGSLISEQWVVSAAHCYKTRI----QVRLGEHNIKVLEGNEQFINAVKIIRHPKYNRD 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+DI L+K++ P + + L A + SG+G F L
Sbjct: 80 TLD--NDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C + + +S C + GGKD+CQ DSGGP+ +C + G+
Sbjct: 138 LDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDSGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 192 SWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+GG + P+Q ++ FCGGSLIS +V++AAHC
Sbjct: 1 IVGGYTCEENSLPYQV---------SLNSGSHFCGGSLISEQWVVSAAHC 41
>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure
Solution And Refinement At 1.8 Angstroms Resolution
Length = 235
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 21/217 (9%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY- 337
++ CGG LI P++V+TAAHC ++ V G V Q+ HP+Y
Sbjct: 21 EYLCGGVLIDPSWVITAAHCYSNNY----QVLLGRNNLFKDEPFAQRRLVRQSFRHPDYI 76
Query: 338 ---TTEGTSQ-----YHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNY 389
T T Q +D+ LL ++ P + + +K L T +ASG+G N
Sbjct: 77 PLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNP 136
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
+ S L V + +++N+ C + + + LCA M GGKDTC GDSGGPL
Sbjct: 137 SEMVVSHDLQCVNIHLLSNEKCIETYKDNVTDVMLCAGEMEGGKDTCAGDSGGPL----- 191
Query: 449 DLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
+C + GITS G C TPAIY ++ + WI
Sbjct: 192 -ICDGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWI 227
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 34 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 89
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 90 TLN--NDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 147
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 148 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 201
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 202 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 230
>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight
Into Structural Radiation Damage
Length = 223
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 31/218 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
T L + I+++ +C S + S+ CA + G D+CQGDSGGP+ +
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAYGLEGKGDSCQGDSGGPV------V 182
Query: 451 CMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
C + GI S+G C N P +YT+V YV WI T+
Sbjct: 183 CSGKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTI 220
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 32 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 87
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 88 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLKC 145
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 146 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 199
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 46 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 101
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 102 --TLNNDIMLIKLSSPVKLNAHVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 159
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 160 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 213
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 214 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 242
>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To
Inhibitor Eglin C From Hirudo Medicinalis
Length = 249
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 19/213 (8%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI--LHPNYTT 339
CGG+LI+ N+V+TAAHCI++ R R + K + V D + + +H +
Sbjct: 30 CGGTLIASNFVLTAAHCISN----TRTYRVA-VGKNNLEVEDEEGSLFVGVDTIHVHKRW 84
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLR 397
+DIAL+K+A VE S+T++ ACL ++ K +G+G+L + + + +
Sbjct: 85 NALLLRNDIALIKLAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRL-WTNGPIADK 143
Query: 398 LMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKD----TCQGDSGGPLQTIMPDLCMY 453
L + + ++++ TCS+ + ++ T++ G D C GDSGGPL + + +
Sbjct: 144 LQQGLQPVVDHATCSRID--WWGFRVKKTMVCAGGDGVISACNGDSGGPLNCQLEN-GSW 200
Query: 454 NIIGITSYG--RQCGHANTPAIYTRVSYYVPWI 484
+ GI S+G R C P +YTRVS Y+ WI
Sbjct: 201 EVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWI 233
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITS 244
++GG A+ +P Q + + +K+ W CGG+LI+ N+V+TAAHCI++
Sbjct: 1 VVGGEDARPHSWPWQISLQY------LKNDTWRHTCGGTLIASNFVLTAAHCISN 49
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 9/97 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI--LHPNYTTEGTSQYHDIALLK 63
AAHCI++ R R + K + V D + + +H + +DIAL+K
Sbjct: 43 AAHCISNT----RTYRVA-VGKNNLEVEDEEGSLFVGVDTIHVHKRWNALLLRNDIALIK 97
Query: 64 IAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKL 98
+A VE S+T++ ACL ++ K +G+G+L
Sbjct: 98 LAEHVELSDTIQVACLPEKDSLLPKDYPCYVTGWGRL 134
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDHK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 34 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 89
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 90 TLN--NDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 147
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGD+GGP+ +C + GI
Sbjct: 148 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDAGGPV------VCNGELQGIV 201
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 202 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 230
>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
pdb|1NPM|B Chain B, Neuropsin, A Serine Protease Expressed In The Limbic
System Of Mouse Brain
Length = 225
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 14/211 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
CGG L+ +V+TAAHC K +Y VR G + S + +V Q+I HP Y
Sbjct: 25 ICGGVLVGDRWVLTAAHC-----KKQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNN 79
Query: 340 EGTSQY-HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
+ HDI L+++ + +KP L I SG+G + L
Sbjct: 80 SNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTL 139
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+ I + + C + I+ + + G DTCQGDSGGPL +C + GI
Sbjct: 140 NCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQGDSGGPL------VCDGMLQGI 193
Query: 459 TSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
TS+G CG P +YT++ Y WI T+
Sbjct: 194 TSWGSDPCGKPEKPGVYTKICRYTTWIKKTM 224
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 6 AAHCITSPLGKPRY-VRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQY-HDIALLK 63
AAHC K +Y VR G + S + +V Q+I HP Y + HDI L++
Sbjct: 39 AAHC-----KKQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIR 93
Query: 64 IAPPVEFSETLKPACLNRAHNVKSPTAIASGFG 96
+ + +KP L I SG+G
Sbjct: 94 LQNSANLGDKVKPVQLANLCPKVGQKCIISGWG 126
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 224 FCGGSLISPNYVMTAAHC 241
CGG L+ +V+TAAHC
Sbjct: 25 ICGGVLVGDRWVLTAAHC 42
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGD+GGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDAGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With
Benzamidine
Length = 220
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 14/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSL+S ++V++AAHC S L VR G T+ I HPNY++
Sbjct: 24 FCGGSLVSKDWVVSAAHCYKSVL----RVRLGEHHIRVNEGTEQYISSSSVIRHPNYSSY 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ DI L+K+ P ++ + L + SG+G + +L
Sbjct: 80 NINN--DIMLIKLTKPATLNQYVHAVALPTECAADATMCTVSGWGN-TMSSVADGDKLQC 136
Query: 401 VVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ L I+++ C+ +I+ S CA + GGKD+CQGDSGGP+ +C + G+
Sbjct: 137 LSLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPV------VCNGVLQGVV 190
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +Y +V W+ T+
Sbjct: 191 SWGYGCAERDHPGVYAKVCVLSGWVRDTM 219
>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|B Chain B, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|C Chain C, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|2R9P|D Chain D, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor(Bpti)
pdb|3L33|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L33|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor(Appi)
pdb|3L3T|A Chain A, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|B Chain B, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|C Chain C, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3L3T|D Chain D, Human Mesotrypsin Complexed With Amyloid Precursor Protein
Inhibitor Variant (Appir15k)
pdb|3P92|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17G)
pdb|3P95|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin
Inhibitor Variant (Bpti-K15rR17D)
Length = 224
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLIS +V++AAHC + + VR G + + I HP Y +
Sbjct: 24 FCGGSLISEQWVVSAAHCYKTRI----QVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRD 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+DI L+K++ P + + L A + SG+G F L
Sbjct: 80 TLD--NDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C + + +S C + GGKD+CQ D+GGP+ +C + G+
Sbjct: 138 LDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDAGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 192 SWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
I+GG + P+Q ++ FCGGSLIS +V++AAHC + + +
Sbjct: 1 IVGGYTCEENSLPYQV---------SLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLG 51
Query: 252 KAPLRTL----LFISMAEV 266
+ ++ L FI+ A++
Sbjct: 52 EHNIKVLEGNEQFINAAKI 70
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLIS +V++AAHC + + VR G + + I HP Y +
Sbjct: 24 FCGGSLISEQWVVSAAHCYKTRI----QVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRD 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+DI L+K++ P + + L A + SG+G F L
Sbjct: 80 TLD--NDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKC 137
Query: 401 VVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C + + +S C + GGKD+CQ D+GGP+ +C + G+
Sbjct: 138 LDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDAGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI T+
Sbjct: 192 SWGHGCAWKNRPGVYTKVYNYVDWIKDTI 220
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
I+GG + P+Q ++ FCGGSLIS +V++AAHC + + +
Sbjct: 1 IVGGYTCEENSLPYQV---------SLNSGYHFCGGSLISEQWVVSAAHCYKTRIQVRLG 51
Query: 252 KAPLRTL----LFISMAEV 266
+ ++ L FI+ A++
Sbjct: 52 EHNIKVLEGNEQFINAAKI 70
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 32 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 87
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 88 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 145
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQG+SGGP+ +C + GI
Sbjct: 146 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGNSGGPV------VCNGELQGIV 199
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 200 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 228
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+G C + P +YT+V YV WI T+
Sbjct: 192 KWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+G C + P +YT+V YV WI T+
Sbjct: 192 EWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGD GGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDCGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 22/215 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYV--RFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
CGG+L+ ++V+TAAHCI+S R V R L T S+ + ++ ++H ++ +
Sbjct: 30 CGGTLVDQSWVLTAAHCISSSR-TYRVVLGRHSLSTNEPGSLAVKVSKL---VVHQDWNS 85
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKLNYFDTKESLR 397
S +DIALLK+A PV ++ ++ CL A + + +G+G+L +
Sbjct: 86 NQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDI- 144
Query: 398 LMKVVLDIINNDTCSK---QETTLISSQLCATVMAGGK---DTCQGDSGGPLQTIMPDLC 451
L + L +++ TCSK +T+ ++ +C AGG +C GDSGGPL +
Sbjct: 145 LQQGQLLVVDYATCSKPGWWGSTVKTNMIC----AGGDGIISSCNGDSGGPLNCQGAN-G 199
Query: 452 MYNIIGITSYGRQ--CGHANTPAIYTRVSYYVPWI 484
+ + GI S+G C + + P+++TRVS Y+ WI
Sbjct: 200 QWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWI 234
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITS 244
++GG A+ +P Q + + G +W CGG+L+ ++V+TAAHCI+S
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSG------QWRHTCGGTLVDQSWVLTAAHCISS 49
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 6 AAHCITSPLGKPRYV--RFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLK 63
AAHCI+S R V R L T S+ + ++ ++H ++ + S +DIALLK
Sbjct: 43 AAHCISSSR-TYRVVLGRHSLSTNEPGSLAVKVSKL---VVHQDWNSNQLSNGNDIALLK 98
Query: 64 IAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKL 98
+A PV ++ ++ CL A + + +G+G+L
Sbjct: 99 LASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRL 135
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++A HC S + VR G + + I HP Y +
Sbjct: 24 FCGGSLINEQWVVSAGHCYKSRI----QVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ + + L A + SG+G L
Sbjct: 80 TLN--NDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASSGADXPDELQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ +++ C I+S + C + GGKD+CQGDSGGP+ +C + G+
Sbjct: 138 LDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI +T+
Sbjct: 192 SWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
I+GG + P+Q ++ FCGGSLI+ +V++A HC S +
Sbjct: 1 IVGGYNCEENSVPYQV---------SLNSGYHFCGGSLINEQWVVSAGHCYKSRI 46
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ ++I L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGDEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ ++I L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 18/211 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L+ ++V+TAAHC+ S + V G + T + V + I HP+Y E
Sbjct: 28 ICGGFLVREDFVLTAAHCLGSSIN----VTLGAHNIMERERTQQVIPVRRPIPHPDYNDE 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNYFDTKESLRL 398
+ +DI LLK+ + ++ + P L R+ P + S G+G+L + + +L
Sbjct: 84 TLA--NDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLG-VNMPSTDKL 140
Query: 399 MKVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
+V L++ + + C + I +Q+CA + K++ GDSGGPL +C G
Sbjct: 141 QEVDLEVQSEEKCIARFKNYIPFTQICAGDPSKRKNSFSGDSGGPL------VCNGVAQG 194
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
I SYGR G TP +YTR+S ++ WI T+
Sbjct: 195 IVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG AK P+ A + F G + CGG L+ ++V+TAAHC+ S + T+
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSH-----ICGGFLVREDFVLTAAHCLGSSINVTL 54
>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
pdb|3RP2|B Chain B, The Structure Of Rat Mast Cell Protease Ii At
1.9-Angstroms Resolution
Length = 224
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 96/213 (45%), Gaps = 17/213 (7%)
Query: 274 TMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNIL 333
T K ++ CGG LIS +V+TAAHC G+ V G T +V + I+
Sbjct: 22 TEKGLRVICGGFLISRQFVLTAAHC----KGREITVILGAHDVRKRESTQQKIKVEKQII 77
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFD 391
H +Y + HDI LLK+ VE + + L + P A+ A+G+GK D
Sbjct: 78 HESYNS--VPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRD 135
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
S L +V L I++ C Q+C + GDSGGPL LC
Sbjct: 136 PT-SYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMGDSGGPL------LC 188
Query: 452 MYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
GI SYG A PAI+TRVS YVPWI
Sbjct: 189 AGVAHGIVSYGHP--DAKPPAIFTRVSTYVPWI 219
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
IIGG + P+ A + V E G ++ CGG LIS +V+TAAHC
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKG----LRVICGGFLISRQFVLTAAHC 46
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G L
Sbjct: 80 TLN--NDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGK +CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKSSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G L
Sbjct: 80 TLN--NDIMLIKLSSPVKLNARVATIALPSSCAPAGTQCLISGWGHTLSSGVNHPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGKD+CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPGVYTKVCNYVDWIQDTI 220
>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 At Ph 5
pdb|1HAY|B Chain B, Snapshots Of Serine Protease Catalysis: (B) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 10 Seconds
pdb|1HB0|B Chain B, Snapshots Of Serine Protease Catalysis: (D) Acyl-Enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-Casomorphin-7 Jumped To Ph 10 For 2 Minutes
Length = 240
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG+LI N+VMTAAHC+ L V G + T+ V + ++HP + T+
Sbjct: 30 CGGTLIRQNWVMTAAHCVDREL--TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDD 87
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTKESLRL 398
+ +DIALL++A V + ++ L RA + SP I +G+G L + + + L
Sbjct: 88 VAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILRNNSPCYI-TGWG-LTRTNGQLAQTL 145
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L ++ CS +T+ +S +CA G + CQGDSGGPL ++ Y +
Sbjct: 146 QQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHCLVNG--QYAV 202
Query: 456 IGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
G+TS+ + C P ++TRVS Y+ WI + +
Sbjct: 203 HGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ L V G + T+ V + ++HP + T+ + +DIALL++A
Sbjct: 43 AAHCVDREL--TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLA 100
Query: 66 PPVEFSETLKPACLNRAHNV---KSPTAIASGFG 96
V + ++ L RA + SP I +G+G
Sbjct: 101 QSVTLNSYVQLGVLPRAGTILRNNSPCYI-TGWG 133
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 97/234 (41%), Gaps = 21/234 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQ 444
+T + L V L I+ C I+ + CA GK D C+GDSGGP
Sbjct: 146 --ETGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 203
Query: 445 TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNSSL 498
P + +GI S+G C YT V WI + DQF SS+
Sbjct: 204 MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQFGCSSV 255
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component B: A Novel, Glycosylated Two-chained Trypsin
Length = 238
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 105/213 (49%), Gaps = 9/213 (4%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGS+I+ +V+ AAHC+ + G + S H V ++ NY +
Sbjct: 27 FCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVNENY--D 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
+ +D++++K A + F + P C + A++ + SG+G +N L
Sbjct: 85 PATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLR 144
Query: 400 KVVLDIINNDTCSKQET--TLISSQLCATVMAG--GKDTCQGDSGGPLQTIMPDLCMYNI 455
V L+I N C T T+ +CAT G +D+CQGDSGGPL ++ ++++
Sbjct: 145 YVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSCQGDSGGPL-SVKDGSGIFSL 203
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+GI S+G C + P +Y+RV ++ WI T+
Sbjct: 204 VGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTI 235
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG A+ EFP Q V FCGGS+I+ +V+ AAHC+
Sbjct: 1 IVGGIEARPYEFPWQVSVR------RKSSDSHFCGGSIINDRWVVCAAHCM 45
>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L++ +V++AAHC+ V G + + ++ V++ + HP+ +
Sbjct: 25 LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSRPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
HD+ LL+++ ++P R P + +G+G +++ + RL
Sbjct: 85 TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPD-RL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
V+L +++ TC+++ + + +CA + +D+C+GDSGGPL +C +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITQRMMCAE--SNRRDSCKGDSGGPL------VCGGVL 193
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
G+ + G R CG+ P IYTRV+ Y WI
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl
Dipeptide Anilide Inhibitor With Elastase
pdb|4EST|E Chain E, Crystal Structure Of The Covalent Complex Formed By A
Peptidyl Alpha, Alpha-Difluoro-Beta-Keto Amide With
Porcine Pancreatic Elastase At 1.78-Angstroms Resolution
pdb|5EST|E Chain E, Crystallographic Analysis Of The Inhibition Of Porcine
Pancreatic Elastase By A Peptidyl Boronic Acid:
Structure Of A Reaction Intermediate
pdb|7EST|E Chain E, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|8EST|E Chain E, Reaction Of Porcine Pancreatic Elastase With 7-substituted
3-alkoxy-4-chloroisocoumarins: Design Of Potent
Inhibitors Using The Crystal Structure Of The Complex
Formed With 4- Chloro-3-ethoxy-7-guanidino-isocoumarin
pdb|1ELA|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELC|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELB|A Chain A, Analogous Inhibitors Of Elastase Do Not Always Bind
Analogously
pdb|1ELD|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1ELE|E Chain E, Structural Analysis Of The Active Site Of Porcine
Pancreatic Elastase Based On The X-Ray Crystal
Structures Of Complexes With
Trifluoroacetyl-Dipeptide-Anilide Inhibitors
pdb|1NES|E Chain E, Structure Of The Product Complex Of Acetyl-ala-pro-ala
With Porcine Pancreatic Elastase At 1.65 Angstroms
Resolution
pdb|1BMA|A Chain A, Benzyl Methyl Aminimide Inhibitor Complexed To Porcine
Pancreatic Elastase
pdb|1FLE|E Chain E, Crystal Structure Of Elafin Complexed With Porcine
Pancreatic Elastase
pdb|1B0E|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With Mdl
101,146
pdb|1QGF|A Chain A, Porcine Pancreatic Elastase Complexed With (3r, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One
pdb|1QIX|B Chain B, Porcine Pancreatic Elastase Complexed With Human
Beta-casomorphin-7
pdb|1QR3|E Chain E, Structure Of Porcine Pancreatic Elastase In Complex With
Fr901277, A Novel Macrocyclic Inhibitor Of Elastases At
1.6 Angstrom Resolution
pdb|1E34|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2- One Soaked In Ph 9 Buffer For One Minute
pdb|1E35|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Toluenesulphonyl-3-Ethyl-4-(Carboxylic
Acid)pyrrolidin-2- One Soaked In Ph 9 Buffer For Two
Minutes
pdb|1E36|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One
pdb|1E37|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 1 Minute
pdb|1E38|B Chain B, Porcine Pancreatic Elastase Complexed With (3s, 4s)n-Para-
Nitrobenzenesulphonyl-3-Ethyl-4-(Carboxylic Acid)
Pyrrolidin-2-One Soaked In Ph 9 Buffer For 2 Minutes
pdb|1HAZ|B Chain B, Snapshots Of Serine Protease Catalysis: (c) Acyl-enzyme
Intermediate Between Porcine Pancreatic Elastase And
Human Beta-casomorphin-7 Jumped To Ph 9 For 1 Minute
pdb|1H9L|B Chain B, Porcine Pancreatic Elastase Complexed With
Acetyl-Val-Glu-Pro-Ile-Cooh
pdb|1OKX|A Chain A, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|1OKX|B Chain B, Binding Structure Of Elastase Inhibitor Scyptolin A
pdb|2FO9|A Chain A, Structure Of Porcine Pancreatic Elastase In 95% Acetone
pdb|2FOA|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010 %
BENZENE
pdb|2FOB|A Chain A, Structure Of Porcine Pancreatic Elastase In 405010
CYCLOHEXANE
pdb|2FOC|A Chain A, Structure Of Porcine Pancreatic Elastase In 55%
Dimethylformamide
pdb|2FOD|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Ethanol
pdb|2FOE|A Chain A, Structure Of Porcine Pancreatic Elastase In 80% Hexane
pdb|2FOF|A Chain A, Structure Of Porcine Pancreatic Elastase In 80%
Isopropanol
pdb|2FOG|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2FOH|A Chain A, Structure Of Porcine Pancreatic Elastase In 40%
Trifluoroethanol
pdb|2BD4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin- 7 And Lys-Ser At Ph 5.0
pdb|2BD5|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Lys- Ser At Ph 5 And Immersed In
Ph 9 Buffer For 30 Seconds
pdb|2BD9|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 28 Seconds (2nd Ph Jump)
pdb|2BDC|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile At
Ph 5.0
pdb|2H1U|A Chain A, Porcine Pancreatic Elastase Complexed With Metpheleuglu At
Ph 5.0
pdb|1BTU|A Chain A, Porcine Pancreatic Elastase Complexed With (3s, 4r)-1-
Toluenesulphonyl-3-Ethyl-Azetidin-2-One-4-Carboxylic
Acid
pdb|1EAS|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 3.
Design, Synthesis, X-Ray Crystallographic Analysis, And
Structure-Activity Relationships For A Series Of Orally
Active 3-Amino-6-Phenylpyridin- 2-One Trifluoromethyl
Ketones
pdb|1EAT|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 5.
Design, Synthesis, And X-Ray Crystallography Of A Series
Of Orally Active 5- Amino-Pyrimidin-6-One-Containing
Trifluoromethylketones
pdb|1EAU|A Chain A, Nonpeptidic Inhibitors Of Human Leukocyte Elastase. 6.
Design Of A Potent, Intratracheally Active,
Pyridone-Based Trifluoromethyl Ketone
pdb|1ELF|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ELG|A Chain A, Nature Of The Inactivation Of Elastase By N-Peptidyl-O-
Aroyl Hydroxylamine As A Function Of Ph
pdb|1ESA|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|1EST|A Chain A, The Atomic Structure Of Crystalline Porcine Pancreatic
Elastase At 2.5 Angstroms Resolution. Comparisons With
The Structure Of Alpha- Chymotrypsin
pdb|1INC|A Chain A, Crystal Structures Of The Complex Of Porcine Pancreatic
Elastase With Two Valine-Derived Benzoxazinone
Inhibitors
pdb|1JIM|A Chain A, Stereospecific Reaction Of 3-Methoxy-4-Chloro-7-
Aminoisocoumarin With Crystalline Porcine Pancreatic
Elastase
pdb|1LVY|A Chain A, Porcine Elastase
pdb|3EST|A Chain A, Structure Of Native Porcine Pancreatic Elastase At 1.65
Angstroms Resolution
pdb|6EST|A Chain A, Interaction Of The Peptide Cf3-Leu-Ala-Nh-C6h4-Cf3(Tfla)
With Porcine Pancreatic Elastase. X-Ray Studies At 1.8
Angstroms
pdb|9EST|A Chain A, Structural Study Of Porcine Pancreatic Elastase Complexed
With 7- Amino-3-(2-Bromoethoxy)-4-Chloroisocoumarin As A
Nonreactivatable Doubly Covalent Enzyme-Inhibitor
Complex
pdb|1GVK|B Chain B, Porcine Pancreatic Elastase Acyl Enzyme At 0.95 A
Resolution
pdb|3E3T|A Chain A, Structure Of Porcine Pancreatic Elastase With The Magic
Triangle I3c
pdb|3MNB|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. First Stage Of
Radiation Damage
pdb|3MNC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Second Stage Of
Radiation Damage
pdb|3MNS|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Third Stage Of
Radiation Damage
pdb|3MNX|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fourth Stage Of
Radiation Damage
pdb|3MO3|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Fifth Stage Of
Radiation Damage
pdb|3MO6|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Sixth Stage Of
Radiation Damage
pdb|3MO9|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Seventh Stage Of
Radiation Damage
pdb|3MOC|A Chain A, Investigation Of Global And Local Effects Of Radiation
Damage On Porcine Pancreatic Elastase. Eighth Stage Of
Radiation Damage
pdb|3MTY|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. First Step Of Radiation
Damage
pdb|3MU0|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU1|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3MU4|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. First Step Of Radiation
Damage
pdb|3MU5|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Third Step Of Radiation
Damage
pdb|3MU8|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Fifth Step Of Radiation
Damage
pdb|3ODD|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region B Of The Crystal. Second Step Of Radiation
Damage
pdb|3ODF|A Chain A, Comparison Of The Character And The Speed Of X-Ray-Induced
Structural Changes Of Porcine Pancreatic Elastase At Two
Temperatures, 100 And 15k. The Data Set Was Collected
From Region A Of The Crystal. Second Step Of Radiation
Damage
pdb|2BB4|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Asp- Phe At Ph 5.0
pdb|2BD2|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Arg- Phe At Ph 5.0
pdb|2BD3|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-casomorphin-7 And Lys- Ala-nh2 At Ph 5.0
pdb|2BD7|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
pdb|2BD8|A Chain A, Porcine Pancreatic Elastase Complexed With
Beta-Casomorphin-7 And Arg- Phe At Ph 5.0 (50 Min Soak)
And Immersed In Ph 9 Buffer For 30 Seconds
pdb|2BDA|A Chain A, Porcine Pancreatic Elastase Complexed With N-Acetyl-Npi
And Ala-Ala At Ph 5.0
pdb|2BDB|A Chain A, Porcine Pancreatic Elastase Complexed With Asn-pro-ile And
Ala-ala At Ph 5.0
pdb|1ESB|A Chain A, Direct Structure Observation Of An Acyl-Enzyme
Intermediate In The Hydrolysis Of An Ester Substrate By
Elastase
pdb|4GVU|A Chain A, Lyngbyastatin 7-porcine Pancreatic Elastase Co-crystal
Structure
Length = 240
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG+LI N+VMTAAHC+ L V G + T+ V + ++HP + T+
Sbjct: 30 CGGTLIRQNWVMTAAHCVDREL--TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDD 87
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTKESLRL 398
+ +DIALL++A V + ++ L RA + SP I +G+G L + + + L
Sbjct: 88 VAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYI-TGWG-LTRTNGQLAQTL 145
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L ++ CS +T+ +S +CA G + CQGDSGGPL ++ Y +
Sbjct: 146 QQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPLHCLVNG--QYAV 202
Query: 456 IGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
G+TS+ + C P ++TRVS Y+ WI + +
Sbjct: 203 HGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ L V G + T+ V + ++HP + T+ + +DIALL++A
Sbjct: 43 AAHCVDREL--TFRVVVGEHNLNQNNGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLA 100
Query: 66 PPVEFSETLKPACLNRAHNV---KSPTAIASGFG 96
V + ++ L RA + SP I +G+G
Sbjct: 101 QSVTLNSYVQLGVLPRAGTILANNSPCYI-TGWG 133
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 97/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C P YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWIQKVI--DQF 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|B Chain B, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1C1M|A Chain A, Porcine Elastase Under Xenon Pressure (8 Bar)
pdb|1HV7|A Chain A, Porcine Pancreatic Elastase Complexed With Gw311616a
pdb|1FZZ|A Chain A, The Crystal Structure Of The Complex Of Non-Peptidic
Inhibitor Ono-6818 And Porcine Pancreatic Elastase.
pdb|1GWA|A Chain A, Triiodide Derivative Of Porcine Pancreas Elastase
pdb|1L0Z|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Dry Paraffin
Oil
pdb|1L1G|A Chain A, The Structure Of Porcine Pancreatic Elastase Complexed
With Xenon And Bromide, Cryoprotected With Glycerol
pdb|1LKA|A Chain A, Porcine Pancreatic ElastaseCA-Complex
pdb|1LKB|A Chain A, Porcine Pancreatic Elastase/na-complex
pdb|1MMJ|N Chain N, Porcine Pancreatic Elastase Complexed With A Potent
Peptidyl Inhibitor, Fr136706
pdb|1MCV|A Chain A, Crystal Structure Analysis Of A Hybrid Squash Inhibitor In
Complex With Porcine Pancreatic Elastase
pdb|1UO6|A Chain A, Porcine Pancreatic ElastaseXE-Complex
pdb|1UVO|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(crystal A)
pdb|1UVP|A Chain A, Structure Of The Complex Of Porcine Pancreatic Elastase In
Complex With Cadmium Refined At 1.85 A Resolution
(Crystal B)
pdb|2A7C|A Chain A, On The Routine Use Of Soft X-rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2A7J|A Chain A, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2BLO|A Chain A, Elastase Before A High Dose X-Ray "burn"
pdb|2BLQ|A Chain A, Elastase After A High Dose X-Ray "burn"
pdb|2D26|C Chain C, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
pdb|2CV3|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With A Macroclyclic Peptide Inhibitor
pdb|2DE8|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase With A
Unique Conformation Induced By Tris
pdb|2DE9|A Chain A, Crystal Structure Of Porcine Pancreatic Elastase Complexed
With Tris After Soaking A Tris-Free Solution
pdb|2G4T|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastase (na)
pdb|2G4U|A Chain A, Anomalous Substructure Of Porcine Pancreatic Elastaase
(ca)
pdb|2OQU|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1QNJ|A Chain A, The Structure Of Native Porcine Pancreatic Elastase At
Atomic Resolution (1.1 A)
pdb|2IOT|A Chain A, Clavulanic Acid Bound To Elastase
pdb|2V0B|A Chain A, Sad Structure Solution Porcine Pancreatic Elastase From A
Selenate Derivative
pdb|2V35|A Chain A, Porcine Pancreatic Elastase In Complex With Inhibitor Jm54
pdb|3HGP|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By High
Resolution Crystallography
pdb|3HGN|A Chain A, Structure Of Porcine Pancreatic Elastase Complexed With A
Potent Peptidyl Inhibitor Fr130180 Determined By Neutron
Crystallography
pdb|3UOU|A Chain A, Crystal Structure Of The Kunitz-Type Protease Inhibitor
Shpi-1 Lys13leu Mutant In Complex With Pancreatic
Elastase
Length = 240
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 39/227 (17%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN---------- 331
CGG+LI N+VMTAAHC+ +L++ V H + QN
Sbjct: 30 CGGTLIRQNWVMTAAHCVDR--------------ELTFRVVVGEHNLNQNDGTEQYVGVQ 75
Query: 332 --ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGK 386
++HP + T+ + +DIALL++A V + ++ L RA + SP I +G+G
Sbjct: 76 KIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYI-TGWG- 133
Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPL 443
L + + + L + L ++ CS +T+ +S +CA G + CQGDSGGPL
Sbjct: 134 LTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGDSGGPL 192
Query: 444 QTIMPDLCMYNIIGITSYGRQ--CGHANTPAIYTRVSYYVPWIVHTV 488
++ Y + G+TS+ + C P ++TRVS Y+ WI + +
Sbjct: 193 HCLVNG--QYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 30/106 (28%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN------------ILHPNYTTEGT 53
AAHC+ +L++ V H + QN ++HP + T+
Sbjct: 43 AAHCVDR--------------ELTFRVVVGEHNLNQNDGTEQYVGVQKIVVHPYWNTDDV 88
Query: 54 SQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFG 96
+ +DIALL++A V + ++ L RA + SP I +G+G
Sbjct: 89 AAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYI-TGWG 133
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+ +
Sbjct: 24 FCGGSLINDQWVVSAAHCYKSRI----QVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ PV+ + + L + + SG+G E L
Sbjct: 80 --TLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ ++ C I+ + C + GGK +CQGDSGGP+ +C + GI
Sbjct: 138 LDAPLLPQADCEASYPGKITDNMVCVGFLEGGKGSCQGDSGGPV------VCNGELQGIV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C + P +YT+V YV WI T+
Sbjct: 192 SWGYGCALPDNPDVYTKVCNYVDWIQDTI 220
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 30/226 (13%)
Query: 275 MKDVKW--FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
++D W CGG+LI+PN+V+TAAHCI++ L V G K + V D + +
Sbjct: 34 LRDNTWRHTCGGTLITPNHVLTAAHCISNTL--TYRVALG---KNNLEVEDEAGSLYVGV 88
Query: 333 ----LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGK 386
+H + + +DIAL+K+A VE +T++ ACL ++ + +G+G+
Sbjct: 89 DTIFVHEKWNSFLVR--NDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGR 146
Query: 387 LNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGK---DTCQGDSG 440
L Y + + L + + +++ TCS+++ TT+ + +C AGG C GDSG
Sbjct: 147 L-YTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVC----AGGDGVISACNGDSG 201
Query: 441 GPLQTIMPDLCMYNIIGITSYGR--QCGHANTPAIYTRVSYYVPWI 484
GPL +++ GI S+G C P ++TRVS Y+ WI
Sbjct: 202 GPLNCQADG--QWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWI 245
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKW--FCGGSLISPNYVMTAAHCITSPL 246
++GG A +P Q + + ++D W CGG+LI+PN+V+TAAHCI++ L
Sbjct: 14 VVGGEDAIPHSWPWQISLQY------LRDNTWRHTCGGTLITPNHVLTAAHCISNTL 64
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 57 HDIALLKIAPPVEFSETLKPACLNRAHNV--KSPTAIASGFGKL 98
+DIAL+K+A VE +T++ ACL ++ + +G+G+L
Sbjct: 104 NDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRL 147
>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine
Thrombin
Length = 259
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 92/234 (39%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHCI P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYV 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIALLK+ PV FS+ + P CL V S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAGGK---DTCQGDS 439
T + VL ++N C I+ + CA D C+GDS
Sbjct: 146 ETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWIQKVI--DQF 257
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHCI P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLNYFECTQYSKIQ 110
IALLK+ PV FS+ + P CL V S +G+G L T ++IQ
Sbjct: 100 IALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQ 156
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 224 FCGGSLISPNYVMTAAHCITSP 245
CG SLIS +V+TAAHCI P
Sbjct: 27 LCGASLISDRWVLTAAHCILYP 48
>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|B Chain B, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|C Chain C, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
pdb|1FDP|D Chain D, Proenzyme Of Human Complement Factor D, Recombinant
Profactor D
Length = 235
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L++ +V++AAHC+ V G + + ++ V++ + HP+ +
Sbjct: 32 LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 91
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
HD+ LL+++ ++P R +P + +G+G +N+ + L
Sbjct: 92 TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 148
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
V+L +++ TC+++ + + +CA + +D+C+GDSGGPL +C +
Sbjct: 149 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDSGGPL------VCGGVL 200
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
G+ + G R CG+ P IYTRV+ Y WI
Sbjct: 201 EGVVTSGSRVCGNRKKPGIYTRVASYAAWI 230
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++A HC S + VR G + + I HP Y +
Sbjct: 24 FCGGSLINEQWVVSAGHCYKSRI----QVRLGEHNIEVLEGNEQFINAAKIIRHPQYDRK 79
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ +DI L+K++ + + L A + SG+G L
Sbjct: 80 TLN--NDIMLIKLSSRAVINAHVSTISLPTAPPATGTKCLISGWGNTASSGADYPDELQC 137
Query: 401 VVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ +++ C I+S + C + GGKD+CQGD+GGP+ +C + G+
Sbjct: 138 LDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDAGGPV------VCNGQLQGVV 191
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT+V YV WI +T+
Sbjct: 192 SWGDGCAQKNKPGVYTKVYNYVKWIKNTI 220
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
I+GG + P+Q ++ FCGGSLI+ +V++A HC S + +
Sbjct: 1 IVGGYNCEENSVPYQV---------SLNSGYHFCGGSLINEQWVVSAGHCYKSRIQVRLG 51
Query: 252 KAPLRTL----LFISMAEV 266
+ + L FI+ A++
Sbjct: 52 EHNIEVLEGNEQFINAAKI 70
>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme
pdb|1DSU|B Chain B, Human Factor D, Complement Activating Enzyme
pdb|1DFP|A Chain A, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DFP|B Chain B, Factor D Inhibited By Diisopropyl Fluorophosphate
pdb|1DIC|A Chain A, Structure Of 3,4-Dichloroisocoumarin-Inhibited Factor D
pdb|1BIO|A Chain A, Human Complement Factor D In Complex With Isatoic
Anhydride Inhibitor
pdb|1HFD|A Chain A, Human Complement Factor D In A P21 Crystal Form
pdb|4D9R|A Chain A, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|B Chain B, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 228
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L++ +V++AAHC+ V G + + ++ V++ + HP+ +
Sbjct: 25 LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
HD+ LL+++ ++P R +P + +G+G +N+ + L
Sbjct: 85 TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
V+L +++ TC+++ + + +CA + +D+C+GDSGGPL +C +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDSGGPL------VCGGVL 193
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
G+ + G R CG+ P IYTRV+ Y WI
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQN--------- 331
FCGGSLI+ +V++AAHC S + VR G DNI+ V N
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI----QVRLG---------EDNINVVEGNEQFISASKS 70
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFD 391
I+HP+Y + + +DI L+K+ + + L + + SG+G
Sbjct: 71 IVHPSYNSN--TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSG 128
Query: 392 TKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
T L + I+++ +C I+S + + GG D+CQGDSGGP+ +C
Sbjct: 129 TSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGLEGG-DSCQGDSGGPV------VC 181
Query: 452 MYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ GI S+G C N P +YT+V YV WI T+
Sbjct: 182 SGKLQGIVSWGSGCAK-NKPGVYTKVCNYVSWIKQTI 217
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 224 FCGGSLISPNYVMTAAHCITSPL 246
FCGGSLI+ +V++AAHC S +
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSGI 46
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 94/229 (41%), Gaps = 21/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTAYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQ 444
+T + L V L I+ C I+ + CA GK D C+GDSGGP
Sbjct: 146 --ETGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 203
Query: 445 TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
P + +GI S+G C YT V WI + DQF
Sbjct: 204 MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 250
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTAYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
I+ GS A+ G P Q + F + + CG SLIS +V+TAAHC+ P
Sbjct: 1 IVEGSDAEIGMSPWQVML-FRKSPQEL-----LCGASLISDRWVLTAAHCLLYP 48
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 94/229 (41%), Gaps = 20/229 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQ 444
+ S+ L V L I+ C I+ + CA GK D C+GDSGGP
Sbjct: 146 ETWGQPSV-LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 204
Query: 445 TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
P + +GI S+G C YT V WI + DQF
Sbjct: 205 MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 251
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a
pdb|2XWB|I Chain I, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|J Chain J, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 228
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L++ +V++AAHC+ V G + + ++ V++ + HP+ +
Sbjct: 25 LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
HD+ LL+++ ++P R +P + +G+G +N+ + L
Sbjct: 85 TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
V+L +++ TC+++ + + +CA + +D+C+GD+GGPL +C +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDAGGPL------VCGGVL 193
Query: 456 IGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
G+ + G R CG+ P IYTRV+ Y WI
Sbjct: 194 EGVVTSGSRVCGNRKKPGIYTRVASYAAWI 223
>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par3
pdb|2PV9|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The
Extracellular Fragment Of Murine Par4
Length = 258
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 92/234 (39%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHCI P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYV 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIALLK+ PV FS+ + P CL V S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAGGK---DTCQGDS 439
T + VL ++N C I+ + CA D C+GD+
Sbjct: 146 ETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDA 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWIQKVI--DQF 257
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHCI P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLNYFECTQYSKIQ 110
IALLK+ PV FS+ + P CL V S +G+G L T ++IQ
Sbjct: 100 IALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQ 156
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 224 FCGGSLISPNYVMTAAHCITSP 245
CG SLIS +V+TAAHCI P
Sbjct: 27 LCGASLISDRWVLTAAHCILYP 48
>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex
With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|1T31|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|2HVX|A Chain A, Discovery Of Potent, Orally Active, Nonpeptide Inhibitors
Of Human Mast Cell Chymase By Using Structure-Based Drug
Design
pdb|3S0N|A Chain A, Crystal Structure Of Human Chymase With Benzimidazolone
Inhibitor
Length = 226
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG LI N+V+TAAHC G+ V G T V++ HP Y T
Sbjct: 29 FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
++ +HDI LLK+ + + N P + +G+G+ S L
Sbjct: 84 -STLHHDIMLLKLKEKASLTLAVGTLPFPSQKNFVPPGRMCRVAGWGRTGVLKPG-SDTL 141
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+V L +++ CS + QLC K +GDSGGPL LC GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGAAQGI 195
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
SYGR A PA++TR+S+Y PWI
Sbjct: 196 VSYGRS--DAKPPAVFTRISHYQPWI 219
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG+ K P+ A + V G K FCGG LI N+V+TAAHC + T+
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSK----FCGGFLIRRNFVLTAAHCAGRSITVTL 55
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 25/222 (11%)
Query: 284 GSLISPNYVMTAAHCITSPL--GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
G+L+ N+V+TAAH + +R G + +LS T + +H YT +
Sbjct: 26 GALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAV--FIHEGYTHDA 83
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK----SPTAIASGFGKLNYFDTKESL- 396
+DIAL+K+ V + + P CL R ASG+G T+
Sbjct: 84 GFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGL-----TQRGFL 137
Query: 397 --RLMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
LM V + I+++ C+ ++ ++ LCA + +GGKD+C+GDSGG L +
Sbjct: 138 ARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLD 197
Query: 448 PDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
+ + + GI S+G CG A +YT+V Y+PWI + +
Sbjct: 198 SETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 15/215 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG+LI+ +V++AAHC + LS D R + ++ P+
Sbjct: 25 LCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVP 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT----AIASGFGKLNYFDTKES 395
GT+ HDIALL++ PV ++ + P CL R + ++ ++ SG+G+L +
Sbjct: 85 GTTN-HDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQL-LDRGATA 142
Query: 396 LRLMKVVLDIINNDTCSKQETTLISS------QLCATVMAGGKDTCQGDSGGPLQTIMPD 449
L LM + + + C +Q + S CA G KD+C+GDSGGP T
Sbjct: 143 LELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRG 202
Query: 450 LCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ + GI S+G+ C +YTRVS Y+ W+
Sbjct: 203 --TWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWL 235
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC + LS D R + ++ P+ GT+ HDIALL++
Sbjct: 39 AAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTN-HDIALLRLH 97
Query: 66 PPVEFSETLKPACL-NRAHNVKSPT----AIASGFGKL 98
PV ++ + P CL R + ++ ++ SG+G+L
Sbjct: 98 QPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQL 135
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG GE P Q V + G + CGG+LI+ +V++AAHC
Sbjct: 1 IVGGKVCPKGECPWQ--VLLLVNGAQL------CGGTLINTIWVVSAAHCF 43
>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small
Molecule Inhibitor
Length = 226
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG LI N+V+TAAHC G+ V G T V++ HP Y T
Sbjct: 29 FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
++ +HDI LLK+ + + N P + +G+G+ S L
Sbjct: 84 -STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTL 141
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+V L +++ CS + QLC K +GDSGGPL LC GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGAAQGI 195
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
SYGR A PA++TR+S+Y PWI
Sbjct: 196 VSYGRS--DAKPPAVFTRISHYQPWI 219
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG+ K P+ A + V G K FCGG LI N+V+TAAHC + T+
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSK----FCGGFLIRRNFVLTAAHCAGRSITVTL 55
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 93/229 (40%), Gaps = 21/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQ 444
+ + L V L I+ C I+ + CA GK D C+GDSGGP
Sbjct: 146 --EKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 203
Query: 445 TIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
P + +GI S+G C YT V WI + DQF
Sbjct: 204 MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 250
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 97/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P ++ L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFIENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P ++ L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFIENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9
Angstroms Resolution
Length = 226
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG LI N+V+TAAHC G+ V G T V++ HP Y T
Sbjct: 29 FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
++ +HDI LLK+ + + N P + +G+G+ S L
Sbjct: 84 -STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTL 141
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+V L +++ CS + QLC K +GDSGGPL LC GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGVAQGI 195
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
SYGR A PA++TR+S+Y PWI
Sbjct: 196 VSYGRS--DAKPPAVFTRISHYRPWI 219
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG+ +K P+ A + V G K FCGG LI N+V+TAAHC + T+
Sbjct: 1 IIGGTESKPHSRPYMAYLEIVTSNGPSK----FCGGFLIRRNFVLTAAHCAGRSITVTL 55
>pdb|1NN6|A Chain A, Human Pro-Chymase
Length = 228
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG LI N+V+TAAHC G+ V G T V++ HP Y T
Sbjct: 31 FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 85
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
++ +HDI LLK+ + + N P + +G+G+ S L
Sbjct: 86 -STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTL 143
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+V L +++ CS + QLC K +GDSGGPL LC GI
Sbjct: 144 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGVAQGI 197
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
SYGR A PA++TR+S+Y PWI
Sbjct: 198 VSYGRS--DAKPPAVFTRISHYRPWI 221
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG+ K P+ A + V G K FCGG LI N+V+TAAHC + T+
Sbjct: 3 IIGGTECKPHSRPYMAYLEIVTSNGPSK----FCGGFLIRRNFVLTAAHCAGRSITVTL 57
>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFQ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFS|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFU|B Chain B, Human Chymase - Fynomer Complex
pdb|4AFZ|A Chain A, Human Chymase - Fynomer Complex
pdb|4AFZ|B Chain B, Human Chymase - Fynomer Complex
pdb|4AG1|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|A Chain A, Human Chymase - Fynomer Complex
pdb|4AG2|B Chain B, Human Chymase - Fynomer Complex
Length = 226
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG LI N+V+TAAHC G+ V G T V++ HP Y T
Sbjct: 29 FCGGFLIRRNFVLTAAHCA----GRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNT- 83
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
++ +HDI LLK+ + + N P + +G+G+ S L
Sbjct: 84 -STLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTL 141
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+V L +++ CS + QLC K +GDSGGPL LC GI
Sbjct: 142 QEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFKGDSGGPL------LCAGVAQGI 195
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
SYGR A PA++TR+S+Y PWI
Sbjct: 196 VSYGRS--DAKPPAVFTRISHYRPWI 219
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG+ K P+ A + V G K FCGG LI N+V+TAAHC + T+
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSK----FCGGFLIRRNFVLTAAHCAGRSITVTL 55
>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a
pdb|2XWA|B Chain B, Crystal Structure Of Complement Factor D Mutant R202a
Length = 228
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 17/210 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L++ +V++AAHC+ V G + + ++ V++ + HP+ +
Sbjct: 25 LCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPD 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRL 398
HD+ LL+++ ++P R +P + +G+G +N+ + L
Sbjct: 85 TID--HDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPD-SL 141
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
V+L +++ TC+++ + + +CA + +D+C+GDSGGPL +C +
Sbjct: 142 QHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGDSGGPL------VCGGVL 193
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
G+ + G CG+ P IYTRV+ Y WI
Sbjct: 194 EGVVTSGSAVCGNRKKPGIYTRVASYAAWI 223
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 19/227 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGF-GKL-NYFD 391
HP Y DIAL+K+ PV FS+ + P CL S + +G+ G++ + +
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAAS--LLQAGYKGRVTGWGN 143
Query: 392 TKESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQTI 446
K +++VV L I+ C I+ + CA GK D C+GDSGGP
Sbjct: 144 LKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMK 203
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
P + +GI S+G C YT V WI + DQF
Sbjct: 204 SPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 248
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D CQGDS
Sbjct: 146 ETWTTNVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACQGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 97/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G+ C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 23/221 (10%)
Query: 284 GSLISPNYVMTAAHCITSPL--GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
G+L+ N+V+TAAH + +R G + +LS T + +H YT +
Sbjct: 112 GALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAV--FIHEGYTHDA 169
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK----SPTAIASGFG--KLNYFDTKES 395
+DIAL+K+ V + + P CL R ASG+G + + +
Sbjct: 170 GFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFL----A 224
Query: 396 LRLMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
LM V + I+++ C+ ++ ++ LCA + +GGKD+C+GDSGG L +
Sbjct: 225 RNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS 284
Query: 449 DLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
+ + + GI S+G CG A +YT+V Y+PWI + +
Sbjct: 285 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 325
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 25/222 (11%)
Query: 284 GSLISPNYVMTAAHCITSPL--GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
G+L+ N+V+TAAH + +R G + +LS T + +H YT +
Sbjct: 26 GALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAV--FIHEGYTHDA 83
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK----SPTAIASGFGKLNYFDTKESL- 396
+DIAL+K+ V + + P CL R ASG+G T+
Sbjct: 84 GFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGL-----TQRGFL 137
Query: 397 --RLMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIM 447
LM V + I+++ C+ ++ ++ LCA + +GGKD+C+GD+GG L +
Sbjct: 138 ARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLD 197
Query: 448 PDLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
+ + + GI S+G CG A +YT+V Y+PWI + +
Sbjct: 198 SETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 239
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 94/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAGGK---DTCQGDS 439
T K +++VV L I+ C I+ + CA D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGFKVNDTKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 98/236 (41%), Gaps = 24/236 (10%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI------ 332
++ CG SLIS +V+TAAHC+ P + L+ ++ R ++ I
Sbjct: 29 RFLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKI 88
Query: 333 -LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGK 386
+HP Y DIAL+K+ PV FS+ + P CL S +G+G
Sbjct: 89 YIHPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGN 147
Query: 387 LNYFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQG 437
L T K +++VV L I+ C I+ + CA GK D C+G
Sbjct: 148 LKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAYYKPDEGKRGDACEG 207
Query: 438 DSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
DSGGP P + +GI S+G C YT V WI + DQF
Sbjct: 208 DSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 261
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 45 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 103
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 104 IALMKLKKPVAFSDYIHPVCL 124
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 93/234 (39%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T + VL ++N C I+ + CA GK D C+GDS
Sbjct: 146 ETWTTNINEIQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLNYFECTQYSKIQ 110
IAL+K+ PV FS+ + P CL S +G+G L T ++IQ
Sbjct: 100 IALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLRETWTTNINEIQ 156
>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|D Chain D, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3EDX|F Chain F, Crystal Structure Of The W215aE217A MUTANT OF MURINE
THROMBIN
pdb|3HK3|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(ONE Molecule In The Asymmetric Unit)
pdb|3HK6|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HK6|D Chain D, Crystal Structure Of Murine Thrombin Mutant W215aE217A
(TWO Molecules In The Asymmetric Unit)
pdb|3HKI|B Chain B, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
pdb|3HKI|E Chain E, Crystal Structure Of Murine Thrombin Mutant W215a/e217a In
Complex With The Extracellular Fragment Of Human Par1
Length = 258
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 91/234 (38%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHCI P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYV 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIALLK+ PV FS+ + P CL V S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAGGK---DTCQGDS 439
T + VL ++N C I+ + CA D C+GDS
Sbjct: 146 ETWTTNINEIQPSVLQVVNLPIVERPVCKASTRIRITDNMFCAGFKVNDTKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWIQKVI--DQF 257
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHCI P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCILYPPWDKNFTENDLLVRIGKHSRTRYERNVEKISMLEKIYVHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLNYFECTQYSKIQ 110
IALLK+ PV FS+ + P CL V S +G+G L T ++IQ
Sbjct: 100 IALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVTGWGNLRETWTTNINEIQ 156
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 224 FCGGSLISPNYVMTAAHCITSP 245
CG SLIS +V+TAAHCI P
Sbjct: 27 LCGASLISDRWVLTAAHCILYP 48
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 59 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 118
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 119 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 177
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 178 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 237
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 238 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 289
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 73 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 131
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 132 IALMKLKKPVAFSDYIHPVCL 152
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 63 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 122
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 123 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 181
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 182 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 241
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 242 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 293
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 77 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 135
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 136 IALMKLKKPVAFSDYIHPVCL 156
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 57 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 116
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 117 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 287
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 71 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 129
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 130 IALMKLKKPVAFSDYIHPVCL 150
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 56 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 115
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 116 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 174
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 175 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 234
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 235 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 286
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 70 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 128
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 129 IALMKLKKPVAFSDYIHPVCL 149
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 63 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 122
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 123 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 181
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 182 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 241
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 242 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 293
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 77 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 135
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 136 IALMKLKKPVAFSDYIHPVCL 156
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 57 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 116
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 117 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 287
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 71 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 129
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 130 IALMKLKKPVAFSDYIHPVCL 150
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 17/216 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG+LI+ +V++AAHC + LS D R + ++ P+
Sbjct: 25 LCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVP 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPT----AIASGFGKLNYFDTKES 395
GT+ HDIALL++ PV ++ + P CL R + ++ ++ SG+G+L D +
Sbjct: 85 GTTN-HDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQL--LDRGAT 141
Query: 396 LRLMKVV-LDIINNDTCSKQETTLISS------QLCATVMAGGKDTCQGDSGGPLQTIMP 448
+++V+ + + C +Q + S CA G KD+C+GDSGGP T
Sbjct: 142 ALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR 201
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ + GI S+G+ C +YTRVS Y+ W+
Sbjct: 202 G--TWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWL 235
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC + LS D R + ++ P+ GT+ HDIALL++
Sbjct: 39 AAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTN-HDIALLRLH 97
Query: 66 PPVEFSETLKPACL-NRAHNVKSPT----AIASGFGKL 98
PV ++ + P CL R + ++ ++ SG+G+L
Sbjct: 98 QPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQL 135
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG GE P Q V + G + CGG+LI+ +V++AAHC
Sbjct: 1 IVGGKDCPKGECPWQ--VLLLVNGAQL------CGGTLINTIWVVSAAHCF 43
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 57 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 116
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 117 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 287
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 71 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 129
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 130 IALMKLKKPVAFSDYIHPVCL 150
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 59 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 118
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 119 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 177
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 178 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 237
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 238 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 289
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 73 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 131
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 132 IALMKLKKPVAFSDYIHPVCL 152
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 23/221 (10%)
Query: 284 GSLISPNYVMTAAHCITSPL--GKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
G+L+ N+V+TAAH + +R G + +LS T + +H YT +
Sbjct: 187 GALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAV--FIHEGYTHDA 244
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK----SPTAIASGFG--KLNYFDTKES 395
+DIAL+K+ V + + P CL R ASG+G + + +
Sbjct: 245 GFD-NDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFL----A 299
Query: 396 LRLMKVVLDIINNDTCSKQ-------ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
LM V + I+++ C+ ++ ++ LCA + +GGKD+C+GDSGG L +
Sbjct: 300 RNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS 359
Query: 449 DLCMYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
+ + + GI S+G CG A +YT+V Y+PWI + +
Sbjct: 360 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENII 400
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
+FCGG+LI+P +V+TAAHC ++ ++ G+ +K + + + + PN
Sbjct: 24 FFCGGTLINPEWVVTAAHCDSTDF----QMQLGVHSKKVLNEDEQTRNPKEKFICPNKNN 79
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
DI L+K+ P+ S+ + P L + G+G + KE+ +
Sbjct: 80 NEVLD-KDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSIT--PVKETFPDV 136
Query: 400 KVV--LDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
++++++ C L++ LCA ++ GGKDTC GDSGGPL +C
Sbjct: 137 PYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPL------ICNGQF 190
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
GI SYG CG P IYT V Y WI +
Sbjct: 191 QGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
+IGG+ E H+ V F G +FCGG+LI+P +V+TAAHC ++
Sbjct: 1 VIGGNECDINE--HRFLVAFFNTTG------FFCGGTLINPEWVVTAAHCDST 45
>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
pdb|2XXL|B Chain B, Crystal Structure Of Drosophila Grass Clip Serine Protease
Of Toll Pathway
Length = 408
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 38/240 (15%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHR--------- 327
+ ++ CGG++IS Y++TAAHC+ +R G + S ++ +
Sbjct: 143 ESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLG---EHRISTEEDCRQQGRKKKCAP 199
Query: 328 ------VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP---- 377
+ ++++H Y HDIALLK+ V F + +KP CL +K
Sbjct: 200 PVVNVGIEKHLIHEKYDARHI--MHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQI 257
Query: 378 -TAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLIS-SQLCATVMAGG--KD 433
T +G+G + S L++ + + CS+ + SQLC + GG +D
Sbjct: 258 STYFVTGWGTTE--NGSSSDVLLQANVPLQPRSACSQAYRRAVPLSQLC---VGGGDLQD 312
Query: 434 TCQGDSGGPLQTIMPDLCMYN----IIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
+C+GDSGGPLQ L Y GI S G CG + P +YT V YV WI T+
Sbjct: 313 SCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTM 372
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 39 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL 79
+ ++++H Y HDIALLK+ V F + +KP CL
Sbjct: 206 IEKHLIHEKYDARHI--MHDIALLKLNRSVPFQKHIKPICL 244
>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii
From The Beetle Holotrichia Diomphalia
Length = 394
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 26/222 (11%)
Query: 282 CGGSLISPNYVMTAAHCITSPLG-----KPRYVRFGLIT---KLSYSVTDNIHRVMQNIL 333
CGGSLI+P+ V+T AHC+ S K R + +T +L Y ++ Q I+
Sbjct: 164 CGGSLIAPSVVLTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQE----RKIRQVII 219
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV-KSPTAIASGFGKLNYFDT 392
H N+ + + +D+ALL + P+ ++ + CL + + S ASG+GK +
Sbjct: 220 HSNFNPK--TVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSR 277
Query: 393 -KESLRLMKVVLDIINNDTCSKQ--------ETTLISSQLCATVMAGGKDTCQGDSGGPL 443
+ S L K+ L ++ D C + L + +CA GKDTC GD G PL
Sbjct: 278 HRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ-GKDTCTGDGGSPL 336
Query: 444 QTIMP-DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
P + Y +GI ++G CG N P +Y V+++ WI
Sbjct: 337 FCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWI 378
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 196 SRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
+ A+YGEFP V + + CGGSLI+P+ V+T AHC+ S
Sbjct: 135 NEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNS 183
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 98/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNIL 333
CG SLIS +V+TAAHC+ P + VR G ++ Y + I + + +
Sbjct: 57 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYI 116
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 117 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 175
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 176 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 235
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 236 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 287
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHD 58
AAHC+ P + VR G ++ Y + I + + +HP Y D
Sbjct: 71 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLD-RD 129
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 130 IALMKLKKPVAFSDYIHPVCL 150
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
I+ GS A+ G P Q + F + + CG SLIS +V+TAAHC+ P
Sbjct: 31 IVEGSDAEIGMSPWQVML-FRKSPQEL-----LCGASLISDRWVLTAAHCLLYP 78
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGPLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|B Chain B, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|Y Chain Y, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|B Chain B, Kallikrein Complexed With Hirustasin
pdb|1HIA|Y Chain Y, Kallikrein Complexed With Hirustasin
Length = 152
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 14/155 (9%)
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKL----NYFDTKES 395
+G HD+ LL++ P + ++ +K L T ASG+G + + F+ +
Sbjct: 2 DGKDYSHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDE 61
Query: 396 LRLMKVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
++ +++ L + N C+ ++ S LCA + GGKDTC GDSGGPL +C
Sbjct: 62 IQCVQLTL--LQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPL------ICNGM 113
Query: 455 IIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
GITS+G CG AN P+IYT++ +Y+ WI T+
Sbjct: 114 WQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTI 148
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 98/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNIL 333
CG SLIS +V+TAAHC+ P + VR G ++ Y + I + + +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHD 58
AAHC+ P + VR G ++ Y + I + + +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
I+ GS A+ G P Q + F + + CG SLIS +V+TAAHC+ P
Sbjct: 1 IVEGSDAEIGMSPWQVML-FRKSPQEL-----LCGASLISDRWVLTAAHCLLYP 48
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 192 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 251
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 252 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 310
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 311 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 370
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 371 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 422
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 206 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 264
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 265 IALMKLKKPVAFSDYIHPVCL 285
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 98/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNIL 333
CG SLIS +V+TAAHC+ P + VR G ++ Y + I + + +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRY------VRFGLITKLSYSVT-DNIHRVMQNILHPNYTTEGTSQYHD 58
AAHC+ P + VR G ++ Y + I + + +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYEANIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
I+ GS A+ G P Q + F + + CG SLIS +V+TAAHC+ P
Sbjct: 1 IVEGSDAEIGMSPWQVML-FRKSPQEL-----LCGASLISDRWVLTAAHCLLYP 48
>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom
Serine Proteinase From Agkistrodon Acutus
Length = 234
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 18/214 (8%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
+FCGG+LI+P +V+TAAHC ++ ++ G+ +K + + + + PN
Sbjct: 24 FFCGGTLINPEWVVTAAHCDSTNF----QMQLGVHSKKVLNEDEQTRNPKEKFICPNKNN 79
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
DI L+K+ P+ S+ + P L + G+G + KE+ +
Sbjct: 80 NEVLD-KDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSIT--PVKETFPDV 136
Query: 400 KVV--LDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
++++++ C L++ LCA ++ GGKDTC GDSGGPL +C
Sbjct: 137 PYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGDSGGPL------ICNGQF 190
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
GI SYG CG P IYT V Y WI +
Sbjct: 191 QGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNI 224
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
+IGG+ E H+ V F G +FCGG+LI+P +V+TAAHC
Sbjct: 1 VIGGNECDINE--HRFLVAFFNTTG------FFCGGTLINPEWVVTAAHC 42
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 58 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 117
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 118 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 176
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GD+
Sbjct: 177 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDA 236
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 237 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 288
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 72 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 130
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 131 IALMKLKKPVAFSDYIHPVCL 151
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G
pdb|3G01|B Chain B, Structure Of Grc Mutant E192rE193G
Length = 227
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 107/230 (46%), Gaps = 23/230 (10%)
Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
MA FL+ GG K FCGG L+ +V+TAAHC G+ V G + T
Sbjct: 15 MAYYEFLKVGGK----KMFCGGFLVRDKFVLTAAHC----KGRSMTVTLGAHNIKAKEET 66
Query: 323 DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR--AHNVKSPTAI 380
I V + I HP+Y + S +DI LLK+ + + ++P L R AH
Sbjct: 67 QQIIPVAKAIPHPDYNPDDRS--NDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECY 124
Query: 381 ASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGD 438
+G+GK+ D + L +V L + + C Q + ++++C + +GD
Sbjct: 125 VAGWGKVTP-DGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFRGD 183
Query: 439 SGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
SGGPL +C GI SYG+ G A P ++TRV +V WI T+
Sbjct: 184 SGGPL------VCKRAAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTM 225
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC----ITSPLV 247
IIGG+ P+ A F++ GG K FCGG L+ +V+TAAHC +T L
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGK----KMFCGGFLVRDKFVLTAAHCKGRSMTVTLG 56
Query: 248 GTMVKAPLRTLLFISMAE 265
+KA T I +A+
Sbjct: 57 AHNIKAKEETQQIIPVAK 74
>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXG|B Chain B, Crystal Structure Of Human Kallikrein 7 In Complex With
Ala- Ala-phe-chloromethylketone
pdb|2QXH|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXI|A Chain A, High Resolution Structure Of Human Kallikrein 7 In Complex
With Suc-Ala-Ala-Pro-Phe-Chloromethylketone
pdb|2QXJ|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With
Suc- Ala-ala-pro-phe-chloromethylketone And Copper
Length = 224
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 282 CGGSLISPNYVMTAAHCI---------TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
CGG L++ +V+TAAHC + LG R R + ++
Sbjct: 26 CGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRI---------------KASKSF 70
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
HP Y+T+ + +D+ L+K+ S +K L T SG+G D
Sbjct: 71 RHPGYSTQ--THVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDV 128
Query: 393 KESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
LM V + +I+ C+K L+ +S LCA + K+ C GDSGGPL +C
Sbjct: 129 TFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPL------VC 182
Query: 452 MYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
+ G+ S+G CG N P +YT+V + WI T+
Sbjct: 183 RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
II G+ G P Q + + + CGG L++ +V+TAAHC
Sbjct: 1 IIDGAPCARGSHPWQVAL--------LSGNQLHCGGVLVNERWVLTAAHC 42
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 28 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 87
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 88 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 146
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GD+
Sbjct: 147 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDA 206
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 207 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 258
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 42 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 100
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 101 IALMKLKKPVAFSDYIHPVCL 121
>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|B Chain B, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
pdb|3BSQ|C Chain C, Crystal Structure Of Human Kallikrein 7 Produced As A
Secretion Protein In E.Coli
Length = 227
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 282 CGGSLISPNYVMTAAHCI---------TSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
CGG L++ +V+TAAHC + LG R R + ++
Sbjct: 26 CGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRI---------------KASKSF 70
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
HP Y+T+ + +D+ L+K+ S +K L T SG+G D
Sbjct: 71 RHPGYSTQ--THVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGWGTTTSPDV 128
Query: 393 KESLRLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
LM V + +I+ C+K L+ +S LCA + K+ C GDSGGPL +C
Sbjct: 129 TFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIPDSKKNACNGDSGGPL------VC 182
Query: 452 MYNIIGITSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
+ G+ S+G CG N P +YT+V + WI T+
Sbjct: 183 RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
II G+ G P Q + + + CGG L++ +V+TAAHC
Sbjct: 1 IIDGAPCARGSHPWQVAL--------LSGNQLHCGGVLVNERWVLTAAHC 42
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GD+
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDA 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 76 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 135
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 136 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 194
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GD+
Sbjct: 195 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDA 254
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 255 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 306
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 90 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 148
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 149 IALMKLKKPVAFSDYIHPVCL 169
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 22/223 (9%)
Query: 279 KWFCGGSLISPNYVMTAAHCIT-SPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
++ CGG LIS +V+TAAHC S L V G ++ + +V + I+H +
Sbjct: 42 RFLCGGILISSCWVLTAAHCFQESYLPDQLKVVLGRTYRVKPGEEEQTFKVKKYIVHKEF 101
Query: 338 TTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKSPTAIA---SGFGKLNYF 390
+ + +DIALL++ + S++++ CL A N++ P SG+GK
Sbjct: 102 DDD--TYNNDIALLQLKSDSPQCAQESDSVRAICLPEA-NLQLPDWTECELSGYGKHKSS 158
Query: 391 DTKESLRLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGK------DTCQGDSGG 441
S +L + + + + C+ + T+ ++ LCA G+ D CQGDSGG
Sbjct: 159 SPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNVHDACQGDSGG 218
Query: 442 PLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
PL M D M ++GI S+G CG + P +YT+V+ Y+ WI
Sbjct: 219 PL-VCMNDNHM-TLLGIISWGVGCGEKDVPGVYTKVTNYLGWI 259
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 222 KWFCGGSLISPNYVMTAAHCITSPLVGTMVKAPL 255
++ CGG LIS +V+TAAHC + +K L
Sbjct: 42 RFLCGGILISSCWVLTAAHCFQESYLPDQLKVVL 75
>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|B Chain B, Fiddler Crab Collagenase Complexed To Ecotin
Length = 226
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 28/217 (12%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSP------LGKPRYVRFGLITKLSYSVTDNIHRVMQ 330
D +FCGGSLISP +++TAAHC+ LG +R T+++ TD
Sbjct: 21 DDMYFCGGSLISPEWILTAAHCMDGAGFVDVVLGA-HNIREDEATQVTIQSTD------- 72
Query: 331 NILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYF 390
+H NY + S +DIA++++ PV + + L +G+G +
Sbjct: 73 FTVHENYNSFVIS--NDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDS 130
Query: 391 DTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
S L +V + I++N C + +C GGK TC GDSGGPL
Sbjct: 131 ALGISDVLRQVDVPIMSNADCDAVYGIVTDGNICID-STGGKGTCNGDSGGPLN------ 183
Query: 451 CMYNII--GITSYGRQCG-HANTPAIYTRVSYYVPWI 484
YN + GITS+G G A P +TRV+Y++ WI
Sbjct: 184 --YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWI 218
>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 253
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 17/217 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNIL--HPNYTT 339
CGGSLI+P++V+TA HCI++ + V G + ++ + + L HP + +
Sbjct: 41 CGGSLIAPDWVVTAGHCIST--SRTYQVVLGEYDRSVLQGSEQVIPINAGDLFVHPLWNS 98
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTKESL 396
+ +DIAL+K++ + + ++ A L A ++ ++P I SG+G+L Y
Sbjct: 99 NCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYI-SGWGRL-YTGGPLPD 156
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDT---CQGDSGGPLQTIMPDLCMY 453
+L + +L +++ + CS+ + I+ + T++ G DT C GDSGGPL D +
Sbjct: 157 KLQEALLPVVDYEHCSQYDWWGITVK--KTMVCAGGDTRSGCDGDSGGPLNCPAAD-GSW 213
Query: 454 NIIGITSY--GRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ G+TS+ C P ++TRVS ++ WI T+
Sbjct: 214 QVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWINETI 250
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 225 CGGSLISPNYVMTAAHCITS 244
CGGSLI+P++V+TA HCI++
Sbjct: 41 CGGSLIAPDWVVTAGHCIST 60
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 96/234 (41%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y +IAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RNIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y +
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RN 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 95/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+ DS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEADS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 90/229 (39%), Gaps = 22/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 76 LCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYI 135
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y + DIALLK+ P+E S+ + P CL +G+G
Sbjct: 136 HPRYNWKENLD-RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRR 194
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T + VL ++N C I+ + CA G GK D C+GDS
Sbjct: 195 ETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDS 254
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
GGP P + +GI S+G C YT V WI +
Sbjct: 255 GGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 303
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y + D
Sbjct: 90 AAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLD-RD 148
Query: 59 IALLKIAPPVEFSETLKPACL 79
IALLK+ P+E S+ + P CL
Sbjct: 149 IALLKLKRPIELSDYIHPVCL 169
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 115/220 (52%), Gaps = 23/220 (10%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVM-----QNILHPN 336
CGGSLI+P++V+TA HCI++ + V G + SV + +V+ +HP
Sbjct: 28 CGGSLIAPDWVVTAGHCIST--SRTYQVVLG---EYDRSVLEGSEQVIPINAGDLFVHPL 82
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTK 393
+ + + +DIAL+K++ + + ++ A L A ++ ++P I SG+G+L Y
Sbjct: 83 WNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYI-SGWGRL-YTGGP 140
Query: 394 ESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDT---CQGDSGGPLQTIMPDL 450
+L + +L ++ + CS+ + I+ + T++ G DT C GDSGGPL D
Sbjct: 141 LPDKLQQALLPTVDYEHCSQWDWWGITVK--KTMVCAGGDTRSGCNGDSGGPLNCPAADG 198
Query: 451 CMYNIIGITSY--GRQCGHANTPAIYTRVSYYVPWIVHTV 488
+ + G+TS+ C P ++TRVS ++ WI T+
Sbjct: 199 -SWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETI 237
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 225 CGGSLISPNYVMTAAHCITS 244
CGGSLI+P++V+TA HCI++
Sbjct: 28 CGGSLIAPDWVVTAGHCIST 47
>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease
Inhibitor Ecotin
Length = 256
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 90/229 (39%), Gaps = 22/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y + DIALLK+ P+E S+ + P CL +G+G
Sbjct: 87 HPRYNWKENLD-RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T + VL ++N C I+ + CA G GK D C+GDS
Sbjct: 146 ETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
GGP P + +GI S+G C YT V WI +
Sbjct: 206 GGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y + D
Sbjct: 41 AAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IALLK+ P+E S+ + P CL
Sbjct: 100 IALLKLKRPIELSDYIHPVCL 120
>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1BBR|N Chain N, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1ETR|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETS|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1ETT|H Chain H, Refined 2.3 Angstroms X-Ray Crystal Structure Of Bovine
Thrombin Complexes Formed With The Benzamidine And
Arginine-Based Thrombin Inhibitors Napap, 4-Tapap And
Mqpa: A Starting Point For Improving Antithrombotics
pdb|1HRT|H Chain H, The Structure Of A Complex Of Bovine Alpha-Thrombin And
Recombinant Hirudin At 2.8 Angstroms Resolution
pdb|1TBR|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBR|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|H Chain H, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1TBQ|K Chain K, Crystal Structure Of Insect Derived Double Domain Kazal
Inhibitor Rhodniin In Complex With Thrombin
pdb|1UCY|K Chain K, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1UCY|N Chain N, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|H Chain H, Thrombin:hirudin 51-65 Complex
pdb|1MKW|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|H Chain H, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1TOC|B Chain B, Structure Of Serine Proteinase
pdb|1TOC|D Chain D, Structure Of Serine Proteinase
pdb|1TOC|F Chain F, Structure Of Serine Proteinase
pdb|1TOC|H Chain H, Structure Of Serine Proteinase
pdb|1UVT|H Chain H, Bovine Thrombin--Bm14.1248 Complex
pdb|1UVU|H Chain H, Bovine Thrombin--Bm12.1700 Complex
pdb|1YCP|H Chain H, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
pdb|1A0H|B Chain B, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1A0H|E Chain E, The X-Ray Crystal Structure Of Ppack-Meizothrombin Desf1:
KringleTHROMBIN AND CARBOHYDRATEKRINGLETHROMBIN
INTERACTIONS AND Location Of The Linker Chain
pdb|1AVG|H Chain H, Thrombin Inhibitor From Triatoma Pallidipennis
pdb|2A1D|B Chain B, Staphylocoagulase Bound To Bovine Thrombin
pdb|2A1D|F Chain F, Staphylocoagulase Bound To Bovine Thrombin
pdb|2ODY|B Chain B, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|2ODY|D Chain D, Thrombin-bound Boophilin Displays A Functional And
Accessible Reactive-site Loop
pdb|3PMA|B Chain B, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMA|D Chain D, 2.2 Angstrom Crystal Structure Of The Complex Between
Bovine Thrombin And Sucrose Octasulfate
pdb|3PMB|B Chain B, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
pdb|3PMB|D Chain D, 2.9 Angstrom Crystal Structure Of Bovine Thrombin In
Tetragonal Spacegroup
Length = 259
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 90/229 (39%), Gaps = 22/229 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y + DIALLK+ P+E S+ + P CL +G+G
Sbjct: 87 HPRYNWKENLD-RDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRR 145
Query: 389 YFDTKESLRLMKVVLDIIN-----NDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T + VL ++N C I+ + CA G GK D C+GDS
Sbjct: 146 ETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
GGP P + +GI S+G C YT V WI +
Sbjct: 206 GGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y + D
Sbjct: 41 AAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IALLK+ P+E S+ + P CL
Sbjct: 100 IALLKLKRPIELSDYIHPVCL 120
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 95/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-----SGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 95/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|3FZZ|A Chain A, Structure Of Grc
pdb|3FZZ|B Chain B, Structure Of Grc
Length = 227
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 106/233 (45%), Gaps = 29/233 (12%)
Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
MA FL+ GG K FCGG L+ +V+TAAHC G+ V G + T
Sbjct: 15 MAYYEFLKVGGK----KMFCGGFLVRDKFVLTAAHC----KGRSMTVTLGAHNIKAKEET 66
Query: 323 DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNR--AHNVKSPTAI 380
I V + I HP+Y + S +DI LLK+ + + ++P L R AH
Sbjct: 67 QQIIPVAKAIPHPDYNPDDRS--NDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECY 124
Query: 381 ASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQG--- 437
+G+GK+ D + L +V L + + C E+ SS A + G +G
Sbjct: 125 VAGWGKVTP-DGEFPKTLHEVKLTVQKDQVC---ESQFQSSYNRANEICVGDSKIKGASF 180
Query: 438 --DSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
DSGGPL +C GI SYG+ G A P ++TRV +V WI T+
Sbjct: 181 EEDSGGPL------VCKRAAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTM 225
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM- 250
IIGG+ P+ A F++ GG K FCGG L+ +V+TAAHC + T+
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGK----KMFCGGFLVRDKFVLTAAHCKGRSMTVTLG 56
Query: 251 ---VKAPLRTLLFISMAE 265
+KA T I +A+
Sbjct: 57 AHNIKAKEETQQIIPVAK 74
>pdb|4GSO|A Chain A, Structure Of Jararacussin-I
Length = 232
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 23/216 (10%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
+FCG +LI+ +V+TAAHC ++ ++ G+ +K + + + + PN
Sbjct: 23 YFCGLTLINQEWVVTAAHCDSTNF----QMQLGVHSKKVLNEDEQTRNPKEKFICPNKNM 78
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS-----GFGKLNYFDTKE 394
DI L+K+ P+ S+ + P L +P ++ S G+G + +
Sbjct: 79 SEVLD-KDIMLIKLDKPISNSKHIAPLSL-----PSNPPSVGSVCRIMGWGSITIPNETY 132
Query: 395 SLRLMKVVLDIINNDTCSKQETTL-ISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
+++++ + C L + LCA V+ GGKDTC GDSGGPL +C
Sbjct: 133 PDVPYCANINLVDYEVCQGAYNGLPAKTTLCAGVLEGGKDTCVGDSGGPL------ICNG 186
Query: 454 NIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
GI SYG CG P IYT V Y WI +
Sbjct: 187 QFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNI 222
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
++GG E P A F+ G +FCG +LI+ +V+TAAHC
Sbjct: 1 VLGGDECDINEHPFLA---FLYSHG------YFCGLTLINQEWVVTAAHC 41
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 95/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D C+ DS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEPDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G C YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
pdb|1BDA|B Chain B, Catalytic Domain Of Human Single Chain Tissue Plasminogen
Activator In Complex With Dansyl-Egr-Cmk
(Dansyl-Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 24/230 (10%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPN 336
++ CGG LIS ++++AAHC P + V G ++ + V + I+H
Sbjct: 42 RFLCGGILISSCWILSAAHCFQERF-PPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKE 100
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKSPTAIA---SGFGKLNY 389
+ + + +DIALL++ + S ++ CL A +++ P SG+GK
Sbjct: 101 FDDD--TYDNDIALLQLKSDSSRCAQESSVVRTVCLPPA-DLQLPDWTECELSGYGKHEA 157
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCA-TVMAGG-----KDTCQGDSG 440
S RL + + + + C+ Q T+ + LCA +GG D CQGDSG
Sbjct: 158 LSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSG 217
Query: 441 GPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
GPL + D M ++GI S+G CG + P +YT+V+ Y+ WI + P
Sbjct: 218 GPL-VCLNDGRM-TLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP 265
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I GG A P QA + F + + + ++ CGG LIS ++++AAHC
Sbjct: 14 IKGGLFADIASHPWQAAI-FAKHRRSPGE-RFLCGGILISSCWILSAAHCF 62
>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human
Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa]
pdb|1A5H|A Chain A, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
pdb|1A5H|B Chain B, Catalytic Domain Of Human Two-Chain Tissue Plasminogen
Activator Complex Of A Bis-Benzamidine
Length = 252
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 24/230 (10%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRY--VRFGLITKLSYSVTDNIHRVMQNILHPN 336
++ CGG LIS ++++AAHC P + V G ++ + V + I+H
Sbjct: 29 RFLCGGILISSCWILSAAHCFQERF-PPHHLTVILGRTYRVVPGEEEQKFEVEKYIVHKE 87
Query: 337 YTTEGTSQYHDIALLKIAPP----VEFSETLKPACLNRAHNVKSPTAIA---SGFGKLNY 389
+ + + +DIALL++ + S ++ CL A +++ P SG+GK
Sbjct: 88 FDDD--TYDNDIALLQLKSDSSRCAQESSVVRTVCLPPA-DLQLPDWTECELSGYGKHEA 144
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCA-TVMAGG-----KDTCQGDSG 440
S RL + + + + C+ Q T+ + LCA +GG D CQGDSG
Sbjct: 145 LSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSG 204
Query: 441 GPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
GPL + D M ++GI S+G CG + P +YT+V+ Y+ WI + P
Sbjct: 205 GPL-VCLNDGRM-TLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMRP 252
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I GG A P QA + F + + + ++ CGG LIS ++++AAHC
Sbjct: 1 IKGGLFADIASHPWQAAI-FAKHRRSPGE-RFLCGGILISSCWILSAAHCF 49
>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor
Length = 240
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 15/223 (6%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
K CGGSLI ++V+TA C S K G+ + D + + N+ Y
Sbjct: 22 KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHD--VHGRGDEKCKQVLNVSQLVYG 79
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIAS-GFGKLNYFDTKESL 396
EG+ D+ L+K+A P + + L N + T+ + G+G + L
Sbjct: 80 PEGS----DLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLL 135
Query: 397 RLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
R+ L I+ N+ CS+ + TL S++CA G C+GD GGPL + M
Sbjct: 136 RVAH--LYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPL--VCEQHKMR 191
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
++G+ GR C N P I+ RV+YY WI + + P S
Sbjct: 192 MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKVPQS 234
>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 234
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 15/223 (6%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
K CGGSLI ++V+TA C S K G+ + D + + N+ Y
Sbjct: 22 KHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHD--VHGRGDEKCKQVLNVSQLVYG 79
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIAS-GFGKLNYFDTKESL 396
EG+ D+ L+K+A P + + L N + T+ + G+G + L
Sbjct: 80 PEGS----DLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLL 135
Query: 397 RLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
R+ L I+ N+ CS+ + TL S++CA G C+GD GGPL + M
Sbjct: 136 RVAH--LYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPL--VCEQHKMR 191
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQFPNS 496
++G+ GR C N P I+ RV+YY WI + + P S
Sbjct: 192 MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYKVPQS 234
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 115/240 (47%), Gaps = 27/240 (11%)
Query: 264 AEVGFLEEGGTMKDVKWF-CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
A++G L +KD CGG I +++TAAHC+ + + R+ + T + +
Sbjct: 328 AQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRAS----KTHRYQIWTTVVDWIH 383
Query: 323 DNIHRVM-----QNILHPNYTTEGTSQYHDIALLKIAPP-----VEFSETLKPACLNRAH 372
++ R++ + I H NY GT Q +DIAL+++ E ++ PAC+ +
Sbjct: 384 PDLKRIVIEYVDRIIFHENYNA-GTYQ-NDIALIEMKKDGNKKDCELPRSI-PACVPWSP 440
Query: 373 NVKSP--TAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL--CATVM 428
+ P T I SG+G+ D + L + +I+N CSK + CA
Sbjct: 441 YLFQPNDTCIVSGWGREK--DNERVFSLQWGEVKLISN--CSKFYGNRFYEKEMECAGTY 496
Query: 429 AGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
G D C+GDSGGPL + + Y + G+ S+G CG P +YT+V+ Y WI + V
Sbjct: 497 DGSIDACKGDSGGPLVCMDANNVTY-VWGVVSWGENCGKPEFPGVYTKVANYFDWISYHV 555
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 18/80 (22%)
Query: 168 ALAPALVGGVR---YVRTQCDILAMPMIIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWF 224
+L P L GV+ ++R + I+GG RA+ G+ P Q V + G
Sbjct: 302 SLLPKLSCGVKNRMHIRRK-------RIVGGKRAQLGDLPWQ--VAIKDASGIT------ 346
Query: 225 CGGSLISPNYVMTAAHCITS 244
CGG I +++TAAHC+ +
Sbjct: 347 CGGIYIGGCWILTAAHCLRA 366
>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
pdb|1EQ9|B Chain B, Crystal Structure Of Fire Ant Chymotrypsin Complexed To
Pmsf
Length = 222
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSY-SVTDNIHRVMQNILHPNYTTE 340
CG S++ N V+TAAHC+ G R + +Y S + +++ V +++ NY +
Sbjct: 26 CGASILDNNNVLTAAHCVD---GLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKNY--D 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLN-RAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
+D+AL+ + P++F++ ++P L+ +++S +G+G + L
Sbjct: 81 DFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNA-LQ 139
Query: 400 KVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
++ L + C + + +I S +C T+ G+ C GDSGGPL + IGI
Sbjct: 140 EIELIVHPQKQCERDQWRVIDSHIC-TLTKRGEGACHGDSGGPL------VANGAQIGIV 192
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWI 484
S+G C P +YTRVS +V WI
Sbjct: 193 SFGSPCA-LGEPDVYTRVSSFVSWI 216
>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal
Plasma
Length = 237
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 21/218 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG L+ P +V+TAAHC++ + G T H+V + L P +
Sbjct: 26 CGGVLVHPQWVLTAAHCMSDDY----QIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLSL 81
Query: 342 TSQY---------HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDT 392
+ HD+ LL++A P ++ +K L T SG+G ++ F
Sbjct: 82 LKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTN 141
Query: 393 KESLRLMKVVLDIINNDTCSKQ-ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLC 451
+ S L V L + +N+ C++ + LCAT C GDSGG L +C
Sbjct: 142 RGSGTLQCVELRLQSNEKCARAYPEKMTEFVLCATHRDDSGSICLGDSGGAL------IC 195
Query: 452 MYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
GITS+G +C N ++T+V + WI T+
Sbjct: 196 DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETI 233
>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor
pdb|1YBW|B Chain B, Protease Domain Of Hgfa With No Inhibitor
pdb|1YC0|A Chain A, Short Form Hgfa With First Kunitz Domain From Hai-1
pdb|2R0K|A Chain A, Protease Domain Of Hgfa With Inhibitor Fab58
Length = 283
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 37/232 (15%)
Query: 281 FCGGSLISPNYVMTAAHCIT-SP--------LGKPRYVRFGLITKLSYSVTDNIHRVMQN 331
FC GSL+ +V++AAHC + SP LG+ + R +T+ ++ + I + +
Sbjct: 59 FCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQ-TFGIEKYIPYTLYS 117
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEF----SETLKPACLNRAHNV--KSPTAIASGFG 385
+ +P+ HD+ L+++ + S+ ++P CL + +G+G
Sbjct: 118 VFNPSD--------HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG 169
Query: 386 KLNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGP 442
L+ + S L + ++ ++ + CS E + + LCA D CQGDSGGP
Sbjct: 170 HLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGP 229
Query: 443 LQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
L C N + GI S+G CG + P +YTRV+ YV WI + P
Sbjct: 230 LA------CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRP 275
>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
Thrombin- Like Enzyme From Agkistrodon Halys
Length = 238
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 16/232 (6%)
Query: 262 SMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSV 321
++ E FL T + FCGG+LI+ +V+TAAHC K ++ G+ +K
Sbjct: 8 NINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDR----KNFRIKLGMHSK-KVPN 62
Query: 322 TDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA 381
D RV + + T DI L+++ PV+ S+ + P L +
Sbjct: 63 EDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSVGSVCRI 122
Query: 382 SGFGKLNYFDTKESLRLMKVVLDIINNDTCS----KQETTLISSQLCATVMAGGKDTCQG 437
G+G+++ + V ++++ + C + E S LCA ++ GGKDTC+G
Sbjct: 123 MGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKG 182
Query: 438 DSGGPLQTIMPDLCMYNIIGITSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
DSGGPL +C GI S+G C + PA YT+V ++ WI + +
Sbjct: 183 DSGGPL------ICNGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENII 228
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 94/234 (40%), Gaps = 24/234 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP-----TAIASGFGKLN 388
HP Y DIAL+K+ PV FS+ + P CL S +G+G L
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLK 145
Query: 389 YFDT----KESLRLMKVV-LDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDS 439
T K +++VV L I+ C I+ + CA GK D +GDS
Sbjct: 146 ETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDAAEGDS 205
Query: 440 GGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
GGP P + +GI S+G YT V WI + DQF
Sbjct: 206 GGPFVMKSPFNNRWYQMGIVSWGEGADRDGKYGFYTHVFRLKKWIQKVI--DQF 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|C Chain C, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 257
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 37/232 (15%)
Query: 281 FCGGSLISPNYVMTAAHCIT-SP--------LGKPRYVRFGLITKLSYSVTDNIHRVMQN 331
FC GSL+ +V++AAHC + SP LG+ + R +T+ ++ + I + +
Sbjct: 24 FCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQ-TFGIEKYIPYTLYS 82
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEF----SETLKPACLNRAHNV--KSPTAIASGFG 385
+ +P+ HD+ L+++ + S+ ++P CL + +G+G
Sbjct: 83 VFNPSD--------HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG 134
Query: 386 KLNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGP 442
L+ + S L + ++ ++ + CS E + + LCA D CQGDSGGP
Sbjct: 135 HLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGP 194
Query: 443 LQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
L C N + GI S+G CG + P +YTRV+ YV WI + P
Sbjct: 195 LA------CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRP 240
>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75
Length = 248
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 37/232 (15%)
Query: 281 FCGGSLISPNYVMTAAHCIT-SP--------LGKPRYVRFGLITKLSYSVTDNIHRVMQN 331
FC GSL+ +V++AAHC + SP LG+ + R +T+ ++ + I + +
Sbjct: 24 FCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQ-TFGIEKYIPYTLYS 82
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEF----SETLKPACLNRAHNV--KSPTAIASGFG 385
+ +P+ HD+ L+++ + S+ ++P CL + +G+G
Sbjct: 83 VFNPSD--------HDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWG 134
Query: 386 KLNYFDTKESLRLMKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGP 442
L+ + S L + ++ ++ + CS E + + LCA D CQGDSGGP
Sbjct: 135 HLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGP 194
Query: 443 LQTIMPDLCMYN----IIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWP 490
L C N + GI S+G CG + P +YTRV+ YV WI + P
Sbjct: 195 LA------CEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRP 240
>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|B Chain B, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 228
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 27/215 (12%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG LI ++V+TAAHC S + V G I V++ I HP Y ++
Sbjct: 30 CGGFLIREDFVLTAAHCSGSKI----QVTLGAHNIKEQEKMQQIIPVVKIIPHPAYNSKT 85
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKL----NYFDTKES 395
S +DI LLK+ + S +KP L R + P + +G+GKL Y DT
Sbjct: 86 IS--NDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDT--- 140
Query: 396 LRLMKVVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
L +V L + + C ++++CA + + +GDSGGPL +C
Sbjct: 141 --LQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFRGDSGGPL------VCKK 192
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
GI SYG+ G +TP +T+VS ++ WI T+
Sbjct: 193 VAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTM 225
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEE-GGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG AK P+ A + ++E G+ K CGG LI ++V+TAAHC S + T+
Sbjct: 1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKK-----CGGFLIREDFVLTAAHCSGSKIQVTL 55
>pdb|1H9H|E Chain E, Complex Of Eeti-Ii With Porcine Trypsin
Length = 231
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 281 FC-GGSLISPNYVMTAAHCITSPLGKPR-YVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
FC GGSLI+ +V++AAHC K R VR G + + I HPN+
Sbjct: 25 FCSGGSLINSQWVVSAAHCSY----KSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNF- 79
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRA-HNVKSPTAIASGFGKLNYFDTK-ESL 396
G + +DI L+K++ P + + L R+ + ++ SG+G + SL
Sbjct: 80 -NGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLISGWGNTKSSGSSYPSL 138
Query: 397 RLMKVVLDIINNDTC-SKQETTLISSQLCATVMAGGKDTC-QGDSGGPLQTIMPDLCMYN 454
+ ++++ +C S + + +C + GGKD+C QGDSGGP+ L
Sbjct: 139 LQCSLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCSQGDSGGPVVCSNGQL---- 194
Query: 455 IIGITSYGRQC-GHANTPAIYTRVSYYVPWIVHTV 488
GI S+G C N P +YT+V YV WI T+
Sbjct: 195 -QGIVSWGYGCSAQKNKPGVYTKVCNYVNWIQQTI 228
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 16/211 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGGSLI +VMTAAHC+ S + V G + + I V +H + ++
Sbjct: 30 CGGSLIRQGWVMTAAHCVDSA--RTWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDD 87
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNV---KSPTAIASGFGKLNYFDTKESLRL 398
+ +DIALL++ + ++ A L ++ + +P I +G+GK + S L
Sbjct: 88 VAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYI-TGWGKTS-TGGPLSDSL 145
Query: 399 MKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ L +++ TCS +T+ ++ +CA G C GDSGGPL + Y +
Sbjct: 146 KQAWLPSVDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGDSGGPLNCQVNG--SYYV 201
Query: 456 IGITSY--GRQCGHANTPAIYTRVSYYVPWI 484
G+TS+ C + P ++TRVS Y+ W+
Sbjct: 202 HGVTSFVSSSGCNASKKPTVFTRVSAYISWM 232
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS 244
++GG A+ +P Q + + + G + CGGSLI +VMTAAHC+ S
Sbjct: 1 VVGGRVAQPNSWPWQISLQY-KSGSSYYHT---CGGSLIRQGWVMTAAHCVDS 49
>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin
pdb|2PSY|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With
Leupeptin And Zinc
Length = 227
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLS--YSVTDNIHRVMQNILHPNYT 338
+CG L+ P +++TAAHC K VR G + LS Y + + +++I HP Y+
Sbjct: 26 YCGAVLVHPQWLLTAAHCRK----KVFRVRLGHYS-LSPVYESGQQMFQGVKSIPHPGYS 80
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRL 398
G S +D+ L+K+ + ++ ++P ++ + SG+G L
Sbjct: 81 HPGHS--NDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVL 138
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+ + +++ C I + G+D+CQGDSGGP+ +C ++ G+
Sbjct: 139 QCLNISVLSQKRCEDAYPRQIDDTMFCAGDKAGRDSCQGDSGGPV------VCNGSLQGL 192
Query: 459 TSYGR-QCGHANTPAIYTRVSYYVPWIVHTV 488
S+G C N P +YT + + WI T+
Sbjct: 193 VSWGDYPCARPNRPGVYTNLCKFTKWIQETI 223
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
II GS P QA + ++ + +CG L+ P +++TAAHC
Sbjct: 1 IINGSDCDMHTQPWQAAL-------LLRPNQLYCGAVLVHPQWLLTAAHC 43
>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|1HYL|B Chain B, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum
pdb|2HLC|A Chain A, Hl Collagenase Structure At 1.7a Resolution
pdb|2HLC|B Chain B, Hl Collagenase Structure At 1.7a Resolution
Length = 230
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 32/215 (14%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVM-QNILHPNYTT 339
+CGGSLI +++TAAHC+ + Y+ G + N R++ ++ +P+
Sbjct: 29 WCGGSLIDNKWILTAAHCVHDAVSVVVYL--GSAVQYEGEAVVNSERIISHSMFNPD--- 83
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACL-------NRAHNVKSPTAIASGFGKLNYFDT 392
+ +D+AL+KI P VE+++ ++P L N+ N+ A SG+G+ N
Sbjct: 84 ---TYLNDVALIKI-PHVEYTDNIQPIRLPSGEELNNKFENI---WATVSGWGQSN---- 132
Query: 393 KESLRLMKVVLDIINNDTCSKQ--ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDL 450
+++ L +I+ND C+++ ++ S +C + GK C GDSGGP ++ D
Sbjct: 133 TDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDT-SDGKSPCFGDSGGPF--VLSDK 189
Query: 451 CMYNIIGITSYGRQCG-HANTPAIYTRVSYYVPWI 484
+ +IG+ S+ G + P ++RV+ Y+ WI
Sbjct: 190 NL--LIGVVSFVSGAGCESGKPVGFSRVTSYMDWI 222
>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt
Length = 230
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+L + + V+TAAHC++ G + L S + R + + P +T E
Sbjct: 26 FCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGFTKE 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ D AL+K+A P+ TLK A A+N T +G+G N + L+K
Sbjct: 85 --TYGKDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLK 137
Query: 401 VVLDIINNDTCSKQETTLI--SSQLCATV-MAGGKDTCQGDSGGPLQTIMPDLCMYNI-I 456
+ +++ C + ++ + +CA GG DTCQGDSGGP+ D I +
Sbjct: 138 ANVPFVSDAACRSSSSFILVANEMICAGYPDTGGVDTCQGDSGGPM--FRKDNADEWIQV 195
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWI 484
GI S+G C P +YT VS + I
Sbjct: 196 GIVSWGYGCARPGYPGVYTEVSTFASAI 223
>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin
Length = 234
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
+FC G+LI+ +V+TAAHC + ++ G+ +K + + + + PN
Sbjct: 24 FFCSGTLINEEWVLTAAHCDNTNF----QMKLGVHSKKVLNEDEQTRNPKEKFICPNKKN 79
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
+ DI L+K+ V SE + P L + G+G +
Sbjct: 80 DEVLD-KDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSVCHIMGWGSITPIKVTYPDVPY 138
Query: 400 KVVLDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
++++++ C L++ LCA ++ GGKDTC GDSGGPL +C G
Sbjct: 139 CAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPL------ICNGQFQG 192
Query: 458 ITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
I S+G CG P +YT+V Y WI
Sbjct: 193 IVSFGAHPCGQGLKPGVYTKVFDYNHWI 220
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
+IGG E H++ V F G +FC G+LI+ +V+TAAHC
Sbjct: 1 VIGGDECNINE--HRSLVAFFNSTG------FFCSGTLINEEWVLTAAHC 42
>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M
pdb|2ZGH|A Chain A, Crystal Structure Of Active Granzyme M Bound To Its
Product
pdb|2ZKS|A Chain A, Structural Insights Into The Proteolytic Machinery Of
Apoptosis- Inducing Granzyme M
Length = 240
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L+ P +V+TAAHC+ + + R V GL T S +T +I +Q HP Y
Sbjct: 25 LCGGVLVHPKWVLTAAHCLAQRMAQLRLV-LGLHTLDSPGLTFHIKAAIQ---HPRYKPV 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNYFDTKESLRL 398
+ +D+ALL++ V+ S T++P L V + S G+G L + + S L
Sbjct: 81 PALE-NDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWG-LTHQGGRLSRVL 138
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN- 454
++ L +++ C+ +L S +C + + C+GDSGGPL +C
Sbjct: 139 RELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPL------VCGKGR 192
Query: 455 -IIGITSY-GRQCGHANTPAIYTRVSYYVPWI 484
+ G+ S+ R C P + T V+ YV WI
Sbjct: 193 VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ + + R V GL T S +T +I +Q HP Y + +D+ALL++
Sbjct: 39 AAHCLAQRMAQLRLV-LGLHTLDSPGLTFHIKAAIQ---HPRYKPVPALE-NDLALLQLD 93
Query: 66 PPVEFSETLKPACLNRAHNV 85
V+ S T++P L V
Sbjct: 94 GKVKPSRTIRPLALPSKRQV 113
>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Complement C1s Protease
Length = 333
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 39/257 (15%)
Query: 272 GGTMKDVKWF----------CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLI--TKLSY 319
GG+ D+K F GG+LI+ +V+TAAH + YV + ++L+
Sbjct: 85 GGSDADIKNFPWQVFFDNPWAGGALINEYWVLTAAHVVEGNREPTMYVGSTSVQTSRLAK 144
Query: 320 SVTDNIHRVMQNILHPNY----TTEGTSQY-HDIALLKIAPPVEFSETLKPACL---NRA 371
S V +HP + EG + + +DIAL+++ PV+ T+ P CL +
Sbjct: 145 SKMLTPEHV---FIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSD 201
Query: 372 HNV-KSPTAIASGFGKLNYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQLCATVM-- 428
+N+ + SG+G+ D ++RL L + C + + ++ A V
Sbjct: 202 YNLMDGDLGLISGWGRTEKRD--RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTP 259
Query: 429 ----AGGK---DTCQGDSGGPLQTIMP-DLCMYNIIGITSYGRQCGHANTPAIYTRVSYY 480
AGG+ D+C+GDSGG P D + G+ S+G QCG T +YTRV Y
Sbjct: 260 NMICAGGEKGMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNY 316
Query: 481 VPWIVHTVWPDQFPNSS 497
V WI+ T+ + P
Sbjct: 317 VDWIMKTMQENSTPRED 333
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 43 ILHPNY----TTEGTSQY-HDIALLKIAPPVEFSETLKPACL 79
+HP + EG + + +DIAL+++ PV+ T+ P CL
Sbjct: 154 FIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICL 195
>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The
Venom Of Copperhead Snake Agkistrodon Contortrix
Contortrix
pdb|2AIQ|A Chain A, Crystal Structure Of Benzamidine-Inhibited Protein C
Activator From The Venom Of Copperhead Snake Agkistrodon
Contortrix Contortrix
Length = 231
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 91/210 (43%), Gaps = 22/210 (10%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG+LI+ +V+TA HC + + G+ L D + R + T
Sbjct: 24 LCGGTLINQEWVLTARHCDRGNM----RIYLGM-HNLKVLNKDALRRFPKEKYFCLNTRN 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS-----GFGKLNYFDTKES 395
T DI L+++ PV S + P L +P ++ S G+G + +
Sbjct: 79 DTIWDKDIMLIRLNRPVRNSAHIAPLSL-----PSNPPSVGSVCRIMGWGTITSPNATLP 133
Query: 396 LRLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
++I++ C L ++ LCA ++ GGKDTC+GDSGGPL +C
Sbjct: 134 DVPHCANINILDYAVCQAAYKGLAATTLCAGILEGGKDTCKGDSGGPL------ICNGQF 187
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
GI S G C P IYT+V Y WI
Sbjct: 188 QGILSVGGNPCAQPRKPGIYTKVFDYTDWI 217
>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Closed-Form)
pdb|3S9B|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Open-Form)
pdb|3S9C|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V In Complex
With The Fragment (Residues 1533-1546) Of Human Factor V
pdb|3SBK|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V
(Ppack-Bound Form)
Length = 234
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 99/210 (47%), Gaps = 24/210 (11%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
C G+LI+ +V+TAAHC + ++ G+ +K + + I RV + T
Sbjct: 28 CAGALINREWVLTAAHCDRRNI----RIKLGMHSKNIRNEDEQI-RVPRGKYFCLNTKFP 82
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAIASGFGKLN---YFDTKESLR 397
DI L+++ PV +S + P L +R+ V S I G+GK++ Y D
Sbjct: 83 NGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIM-GWGKISTTTYPDVPHCTN 141
Query: 398 LMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ I+ + C S LCA ++ GG+DTC GDSGGPL +C +
Sbjct: 142 IF-----IVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDSGGPL------ICNGEM 190
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
GI + G + CG PA+YT+V Y WI
Sbjct: 191 HGIVAGGSEPCGQHLKPAVYTKVFDYNNWI 220
>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin
Length = 222
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG+L + + V+TAAHC++ G + L S + R + + P Y G
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGYNGTG 80
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
D AL+K+A P+ TLK A A+N T +G+G N + L+K
Sbjct: 81 ----KDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLKA 131
Query: 402 VLDIINNDTC-SKQETTLISSQ-LCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI-IGI 458
+ +++ C S L++++ +CA GG DTCQGDSGGP+ D I +GI
Sbjct: 132 NVPFVSDAACRSAYGNELVANEEICAGYDTGGVDTCQGDSGGPM--FRKDNADEWIQVGI 189
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIV 485
S+G C +YT VS + I
Sbjct: 190 VSWGEGCARKGKYGVYTEVSTFASAIA 216
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG+RA GEFP M + CGG+L + + V+TAAHC++ T +
Sbjct: 1 VVGGTRAAQGEFPF------------MVRLSMGCGGALYAQDIVLTAAHCVSGSGNNTSI 48
Query: 252 KA 253
A
Sbjct: 49 TA 50
>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom
pdb|1BQY|B Chain B, Plasminogen Activator (tsv-pa) From Snake Venom
Length = 234
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
+ CGG+LI+ ++V+TAAHC ++ + FG+ +K + + + PN
Sbjct: 24 FLCGGTLINQDWVVTAAHCDSNNF----QLLFGVHSKKILNEDEQTRDPKEKFFCPNRKK 79
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
+ DI L+K+ V SE + P L + G+GK TKE +
Sbjct: 80 DDEVD-KDIMLIKLDSSVSNSEHIAPLSLPSSPPSVGSVCRIMGWGKT--IPTKEIYPDV 136
Query: 400 K--VVLDIINNDTCSKQET--TLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
++I+++ C + + ++ LCA ++ GG+DTC DSGGPL +C
Sbjct: 137 PHCANINILDHAVCRTAYSWRQVANTTLCAGILQGGRDTCHFDSGGPL------ICNGIF 190
Query: 456 IGITSYGRQ-CGHANTPAIYTRVSYYVPWI 484
GI S+G CG P +YT+V Y+ WI
Sbjct: 191 QGIVSWGGHPCGQPGEPGVYTKVFDYLDWI 220
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
+ GG E H++ V G + CGG+LI+ ++V+TAAHC
Sbjct: 1 VFGGDECNINE--HRSLVVLFNSNG------FLCGGTLINQDWVVTAAHC 42
>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt
Length = 229
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 11/206 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+L + + V+TAAHC++ G + L S + R + + P +T E
Sbjct: 26 FCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGFTKE 84
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMK 400
+ D AL+K+A P+ TLK A A+N T +G+G N + L+K
Sbjct: 85 --TYGKDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLK 137
Query: 401 VVLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+ +++ C + ++ + +CA +DTCQGDSGGP+ + + +GI
Sbjct: 138 ANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQGDSGGPMFR-KDNADEWVQVGI 196
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
S+G C +YT VS + I
Sbjct: 197 VSWGEGCARKGKYGVYTEVSTFASAI 222
>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
Length = 240
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 16/217 (7%)
Query: 282 CGGSLISPNYVMTAAHC-ITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG LI P +V+TAAHC G+ V G + + + + I T++
Sbjct: 28 CGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPFSRVTSD 87
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI-ASGFGKLNYFDTKESLRLM 399
Q +DI L+K+ + ++ +K + +++S T +G+G + + S L
Sbjct: 88 --PQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLR 145
Query: 400 KVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
+V + +++ C+ Q + + +CA G KD+C+GD+GGPL +C
Sbjct: 146 EVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPL------ICKGV 199
Query: 455 IIGITSYGRQCGHANTPAIYTRVS-YYVPWIVHTVWP 490
I S G +CG A P IYT ++ Y WI + P
Sbjct: 200 FHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVP 236
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
IIGG P A + + GG CGG LI P +V+TAAHC
Sbjct: 3 IIGGKEVSPHSRPFMASIQY---GGHH-----VCGGVLIDPQWVLTAAHC 44
>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal
Synthesized Substrate
Length = 240
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 20/212 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
CGG L+ P +V+TAAHC+ + + R V GL T S +T +I +Q HP Y
Sbjct: 25 LCGGVLVHPKWVLTAAHCLAQRMAQLRLV-LGLHTLDSPGLTFHIKAAIQ---HPRYKPV 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS--GFGKLNYFDTKESLRL 398
+ +++ALL++ V+ S T++P L V + S G+G L + + S L
Sbjct: 81 PALE-NNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWG-LTHQGGRLSRVL 138
Query: 399 MKVVLDIINNDTCSKQE---TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN- 454
++ L +++ C+ +L S +C + + C+GDSGGPL +C
Sbjct: 139 RELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGDSGGPL------VCGKGR 192
Query: 455 -IIGITSY-GRQCGHANTPAIYTRVSYYVPWI 484
+ G+ S+ R C P + T V+ YV WI
Sbjct: 193 VLAGVLSFSSRVCTDIFKPPVATAVAPYVSWI 224
>pdb|2RDL|A Chain A, Hamster Chymase 2
pdb|2RDL|B Chain B, Hamster Chymase 2
Length = 226
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 91/205 (44%), Gaps = 17/205 (8%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
C G LI N+VMTAAHC G+ V G K T V + HP Y +
Sbjct: 30 CSGFLIRRNFVMTAAHCA----GRSITVLLGAHNKKVKEDTWQKLEVEKQFPHPKY--DD 83
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRLM 399
+DI LLK+ + + ++ N P + A G+G+ N + S L
Sbjct: 84 RLVLNDIMLLKLKEKANLTLGVGTLPISAKSNSIPPGRVCRAVGWGRTN-VNEPPSDTLQ 142
Query: 400 KVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+V + I++ C E QLC ++ +GDSGGPL LC GI
Sbjct: 143 EVKMRILDPQACKHFEDFHQEPQLCVGNPKKIRNVYKGDSGGPL------LCAGIAQGIA 196
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWI 484
SY + +A P+++TR+S+Y PWI
Sbjct: 197 SYVLR--NAKPPSVFTRISHYRPWI 219
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
IIGG+ + P+ A + V T ++ C G LI N+VMTAAHC
Sbjct: 1 IIGGTECRPHARPYMAYLEIV----TPENHLSACSGFLIRRNFVMTAAHC 46
>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The
Molecular Determinants Of Substrate Specificity
Length = 234
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN 336
D K C G+LI+ ++V+TAAHC L K V G + T I V + +P
Sbjct: 21 DRKTICAGALIAKDWVLTAAHC---NLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPC 77
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKL-NYFDTK 393
Y + ++ D+ LL++ + ++ + L + +VK T +G+G+ N
Sbjct: 78 Y--DPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWS 135
Query: 394 ESLRLMKVVLDIINNDTCSKQE-----TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
++LR +V + II+ C+ + + + +CA + GG+D+C GDSG PL
Sbjct: 136 DTLR--EVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPL----- 188
Query: 449 DLCMYNIIGITSYG--RQCGHANTPAIYTRVS-YYVPWIVHTV 488
LC G+TS+G +CG P +Y +S ++ WI+ T+
Sbjct: 189 -LCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A
pdb|1OP8|B Chain B, Crystal Structure Of Human Granzyme A
pdb|1OP8|C Chain C, Crystal Structure Of Human Granzyme A
pdb|1OP8|D Chain D, Crystal Structure Of Human Granzyme A
pdb|1OP8|E Chain E, Crystal Structure Of Human Granzyme A
pdb|1OP8|F Chain F, Crystal Structure Of Human Granzyme A
Length = 234
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 277 DVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN 336
D K C G+LI+ ++V+TAAHC L K V G + T I V + +P
Sbjct: 21 DRKTICAGALIAKDWVLTAAHC---NLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPC 77
Query: 337 YTTEGTSQYHDIALLKIAPPVEFSETLKPACL-NRAHNVKSPTAI-ASGFGKL-NYFDTK 393
Y + ++ D+ LL++ + ++ + L + +VK T +G+G+ N
Sbjct: 78 Y--DPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWS 135
Query: 394 ESLRLMKVVLDIINNDTCSKQE-----TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMP 448
++LR +V + II+ C+ + + + +CA + GG+D+C GDSG PL
Sbjct: 136 DTLR--EVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCNGDSGSPL----- 188
Query: 449 DLCMYNIIGITSYG--RQCGHANTPAIYTRVS-YYVPWIVHTV 488
LC G+TS+G +CG P +Y +S ++ WI+ T+
Sbjct: 189 -LCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTI 230
>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin
Length = 223
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 97/208 (46%), Gaps = 16/208 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG+L + + V+TAAHC++ G + L S + R + + P Y G
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGYNGTG 80
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
D AL+K+A P+ TLK A A+N T +G+G N + L+K
Sbjct: 81 ----KDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLKA 131
Query: 402 VLDIINNDTC-SKQETTLISSQ-LCATV-MAGGKDTCQGDSGGPLQTIMPDLCMYNI-IG 457
+ +++ C S L++++ +CA GG DTCQGDSGGP+ D I +G
Sbjct: 132 NVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPM--FRKDNADEWIQVG 189
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIV 485
I S+G C P +YT VS + I
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG+RA GEFP M + CGG+L + + V+TAAHC++ T +
Sbjct: 1 VVGGTRAAQGEFPF------------MVRLSMGCGGALYAQDIVLTAAHCVSGSGNNTSI 48
Query: 252 KA 253
A
Sbjct: 49 TA 50
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
MA V FL+E + CGG L+ ++V+TAAHC S + V G T
Sbjct: 15 MAFVQFLQEKSRKR-----CGGILVRKDFVLTAAHCQGSSIN----VTLGAHNIKEQERT 65
Query: 323 DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS 382
V + I HP Y + S +DI LL++ +++ ++P L + P + S
Sbjct: 66 QQFIPVKRPIPHPAYNPKNFS--NDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCS 123
Query: 383 --GFGKLNYFDTKESLRLMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGD 438
G+G ++ +L+ +V+L + + C + ++++C + +GD
Sbjct: 124 VAGWGYVSMSTLATTLQ--EVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKGD 181
Query: 439 SGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
SGGPL +C GI SYG + G P +Y +VS+++PWI T+
Sbjct: 182 SGGPL------VCKDVAQGILSYGNKKG--TPPGVYIKVSHFLPWIKRTM 223
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM- 250
IIGG AK P+ A V F++E + CGG L+ ++V+TAAHC S + T+
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKR-----CGGILVRKDFVLTAAHCQGSSINVTLG 55
Query: 251 ---VKAPLRTLLFI 261
+K RT FI
Sbjct: 56 AHNIKEQERTQQFI 69
>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
pdb|3BEU|B Chain B, Na+-Dependent Allostery Mediates Coagulation Factor
Protease Active Site Selectivity
Length = 224
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 11/205 (5%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG+L + + V+TAAHC++ G + L S + R + + P +T E
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGFTKE- 79
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
+ D AL+K+A P+ TLK A A+N T +G+G N + L+K
Sbjct: 80 -TYGKDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLKA 133
Query: 402 VLDIINNDTCSKQETTLI--SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGIT 459
+ +++ C + ++ + +CA +DTCQGDSGGP+ + + +GI
Sbjct: 134 NVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQGDSGGPMFR-KDNADEWVQVGIV 192
Query: 460 SYGRQCGHANTPAIYTRVSYYVPWI 484
S+G C +YT VS + I
Sbjct: 193 SWGEGCARKGKYGVYTEVSTFASAI 217
>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin
At 1.7 Angstroms Resolution
Length = 223
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG+L + + V+TAAHC++ G + L + R + + P Y G
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSGAAVKV-RSTKVLQAPGYNGTG 80
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
D AL+K+A P+ TLK A A+N T +G+G N + L+K
Sbjct: 81 ----KDWALIKLAQPIN-QPTLKIA-TTTAYN--QGTFTVAGWGA-NREGGSQQRYLLKA 131
Query: 402 VLDIINNDTC-SKQETTLISSQ-LCATV-MAGGKDTCQGDSGGPLQTIMPDLCMYNI-IG 457
+ +++ C S L++++ +CA GG DTCQGDSGGP+ D I +G
Sbjct: 132 NVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPM--FRKDNADEWIQVG 189
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIV 485
I S+G C P +YT VS + I
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG+RA GEFP M + CGG+L + + V+TAAHC++ T +
Sbjct: 1 VVGGTRAAQGEFPF------------MVRLSMGCGGALYAQDIVLTAAHCVSGSGNNTSI 48
Query: 252 KAPLRTLLFISMAEV 266
A + S A V
Sbjct: 49 TATGGVVDLQSGAAV 63
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 25/230 (10%)
Query: 263 MAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVT 322
MA V FL+E + CGG L+ ++V+TAAHC S + V G T
Sbjct: 15 MAFVQFLQEKSRKR-----CGGILVRKDFVLTAAHCQGSSIN----VTLGAHNIKEQERT 65
Query: 323 DNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIAS 382
V + I HP Y + S ++I LL++ +++ ++P L + P + S
Sbjct: 66 QQFIPVKRPIPHPAYNPKNFS--NNIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCS 123
Query: 383 --GFGKLNYFDTKESLRLMKVVLDIINNDTCSK--QETTLISSQLCATVMAGGKDTCQGD 438
G+G ++ +L+ +V+L + + C + ++++C + +GD
Sbjct: 124 VAGWGYVSMSTLATTLQ--EVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKGD 181
Query: 439 SGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
SGGPL +C GI SYG + G P +Y +VS+++PWI T+
Sbjct: 182 SGGPL------VCKDVAQGILSYGNKKG--TPPGVYIKVSHFLPWIKRTM 223
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM- 250
IIGG AK P+ A V F++E + CGG L+ ++V+TAAHC S + T+
Sbjct: 1 IIGGHEAKPHSRPYMAFVQFLQEKSRKR-----CGGILVRKDFVLTAAHCQGSSINVTLG 55
Query: 251 ---VKAPLRTLLFI 261
+K RT FI
Sbjct: 56 AHNIKEQERTQQFI 69
>pdb|1KYN|B Chain B, Cathepsin-G
pdb|1KYN|A Chain A, Cathepsin-G
Length = 235
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 19/210 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG L+ ++V+TAAHC S + V G T + I HP Y
Sbjct: 29 CGGFLVREDFVLTAAHCWGSNIN----VTLGAHNIQRRENTQQHITARRAIRHPQYNQRT 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRLM 399
+DI LL+++ V + + P L RA P + +G+G+++ ++LR
Sbjct: 85 IQ--NDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLR-- 140
Query: 400 KVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+V L + + C + + Q+C K +GDSGGPL LC GI
Sbjct: 141 EVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPL------LCNNVAHGI 194
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
SYG+ G P ++TRVS ++PWI T+
Sbjct: 195 VSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG ++ P+ A + G + CGG L+ ++V+TAAHC S + T+
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSR-----CGGFLVREDFVLTAAHCWGSNINVTL 54
>pdb|1AU8|A Chain A, Human Cathepsin G
pdb|1T32|A Chain A, A Dual Inhibitor Of The Leukocyte Proteases Cathepsin G
And Chymase With Therapeutic Efficacy In Animals Models
Of Inflammation
pdb|1CGH|A Chain A, Human Cathepsin G
Length = 224
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 19/210 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG L+ ++V+TAAHC S + V G T + I HP Y
Sbjct: 29 CGGFLVREDFVLTAAHCWGSNIN----VTLGAHNIQRRENTQQHITARRAIRHPQYNQRT 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNYFDTKESLRLM 399
+DI LL+++ V + + P L RA P + +G+G+++ ++LR
Sbjct: 85 IQ--NDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLR-- 140
Query: 400 KVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
+V L + + C + + Q+C K +GDSGGPL LC GI
Sbjct: 141 EVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPL------LCNNVAHGI 194
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
SYG+ G P ++TRVS ++PWI T+
Sbjct: 195 VSYGKSSGVP--PEVFTRVSSFLPWIRTTM 222
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG ++ P+ A + G + CGG L+ ++V+TAAHC S + T+
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSR-----CGGFLVREDFVLTAAHCWGSNINVTL 54
>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With
Benzamidine
Length = 223
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG+L + + V+TAAHC++ G + L S + R + + P Y G
Sbjct: 22 CGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKV-RSTKVLQAPGYNGTG 80
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKV 401
D AL+K+A P+ TLK A A+N T +G+G N + L+K
Sbjct: 81 ----KDWALIKLAQPIN-QPTLKIATTT-AYN--QGTFTVAGWGA-NREGGSQQRYLLKA 131
Query: 402 VLDIINNDTC-SKQETTLISSQ-LCATV-MAGGKDTCQGDSGGPLQTIMPDLCMYNI-IG 457
+ +++ C S L++++ +CA GG D CQGDSGGP+ D I +G
Sbjct: 132 NVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDPCQGDSGGPM--FRKDNADEWIQVG 189
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIV 485
I S+G C P +YT VS + I
Sbjct: 190 IVSWGYGCARPGYPGVYTEVSTFASAIA 217
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTMV 251
++GG+RA GEFP M + CGG+L + + V+TAAHC++ T +
Sbjct: 1 VVGGTRAAQGEFPF------------MVRLSMGCGGALYAQDIVLTAAHCVSGSGNNTSI 48
Query: 252 KA 253
A
Sbjct: 49 TA 50
>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDG|B Chain B, Human Kallikrein 4 Complex With Nickel And
P-aminobenzamidine
pdb|2BDH|A Chain A, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|B Chain B, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|C Chain C, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDH|D Chain D, Human Kallikrein 4 Complex With Zinc And
P-Aminobenzamidine
pdb|2BDI|A Chain A, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|B Chain B, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|C Chain C, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|D Chain D, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|E Chain E, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|F Chain F, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|G Chain G, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|H Chain H, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|I Chain I, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|J Chain J, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|K Chain K, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|L Chain L, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|M Chain M, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|N Chain N, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|O Chain O, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
pdb|2BDI|P Chain P, Human Kallikrein 4 Complex With Cobalt And P-
Aminobenzamidine
Length = 223
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 17/211 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLIT-KLSYSVTDNIHRVMQNILHPNYTT 339
FC G L+ P +V++AAHC + + GL + + + ++ HP Y
Sbjct: 25 FCSGVLVHPQWVLSAAHCFQNSY----TIGLGLHSLEADQEPGSQMVEASLSVRHPEYNR 80
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
+ +D+ L+K+ V S+T++ + + + SG+G L + + L
Sbjct: 81 PLLA--NDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLL--ANGRMPTVLQ 136
Query: 400 KVVLDIINNDTCSKQETTLIS-SQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
V + +++ + CSK L S CA KD+C GDSGGPL +C + G+
Sbjct: 137 CVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPL------ICNGYLQGL 190
Query: 459 TSYGRQ-CGHANTPAIYTRVSYYVPWIVHTV 488
S+G+ CG P +YT + + WI TV
Sbjct: 191 VSFGKAPCGQVGVPGVYTNLCKFTEWIEKTV 221
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 224 FCGGSLISPNYVMTAAHCI 242
FC G L+ P +V++AAHC
Sbjct: 25 FCSGVLVHPQWVLSAAHCF 43
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG LI ++V+TAAHC S + V G T V + I HP Y +
Sbjct: 29 CGGFLIQDDFVLTAAHCWGSSIN----VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKN 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
S +DI LL++ + + ++P L N+A T +G+G+ K S L
Sbjct: 85 FS--NDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG-KHSHTLQ 141
Query: 400 KVVLDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
+V + + + C S +LC K + +GDSGGPL +C G
Sbjct: 142 EVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPL------VCNKVAQG 195
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
I SYGR G P T+VS +V WI T+
Sbjct: 196 IVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG AK P+ A + ++ + CGG LI ++V+TAAHC S + T+
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKR-----CGGFLIQDDFVLTAAHCWGSSINVTL 54
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG LI ++V+TAAHC S + V G T V + I HP Y +
Sbjct: 29 CGGFLIRDDFVLTAAHCWGSSIN----VTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKN 84
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
S +DI LL++ + + ++P L N+A T +G+G+ K S L
Sbjct: 85 FS--NDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLG-KHSHTLQ 141
Query: 400 KVVLDIINNDTCSKQETTLISS--QLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIG 457
+V + + + C S +LC K + +GDSGGPL +C G
Sbjct: 142 EVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDSGGPL------VCNKVAQG 195
Query: 458 ITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
I SYGR G P T+VS +V WI T+
Sbjct: 196 IVSYGRNNGMP--PRACTKVSSFVHWIKKTM 224
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVGTM 250
IIGG AK P+ A + ++ + CGG LI ++V+TAAHC S + T+
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKR-----CGGFLIRDDFVLTAAHCWGSSINVTL 54
>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
pdb|1AKS|B Chain B, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
Length = 98
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 405 IINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR 463
+++N +C S + + +C + GGKD+CQGDSGGP+ +C + GI S+G
Sbjct: 17 VLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGPV------VCNGQLQGIVSWGY 70
Query: 464 QCGHANTPAIYTRVSYYVPWIVHTV 488
C N P +YT+V YV WI T+
Sbjct: 71 GCAQKNKPGVYTKVCNYVNWIQQTI 95
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-----HRVMQNILHPNY 337
GG+L+ +++TAAH + P L L ++ + + H + + +HP+Y
Sbjct: 25 GGALLGDRWILTAAHTLY-PKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDY 83
Query: 338 TTEGTSQYH-DIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKE 394
+ + + DIALL++ V L P CL N SGFG + + K
Sbjct: 84 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM---EEKI 140
Query: 395 SLRLMKVVLDIINNDTCS-----KQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
+ L V L + N C K + S + CA + +D CQGDSGG P
Sbjct: 141 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP 200
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ + GI S+G C YT+V YV WI
Sbjct: 201 NTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 234
>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP
Length = 234
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 13/208 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITS---PLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNY 337
FCGGSL+ +++TA C +S PL V G + + ++ RV P
Sbjct: 23 FCGGSLVKEQWILTARQCFSSCHMPL-TGYEVWLGTLFQNPQHGEPSLQRV------PVA 75
Query: 338 TTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLR 397
+ LLK+ V ++ + CL V P G T
Sbjct: 76 KMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTV 135
Query: 398 LMKVVLDIINNDTCS-KQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L +L++I+N C+ K + S++C + C+GD GGPL + + +
Sbjct: 136 LNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHN--SWVLE 193
Query: 457 GITSYGRQCGHANTPAIYTRVSYYVPWI 484
GI R C + PA++TRVS +V WI
Sbjct: 194 GIIIPNRVCARSRWPAVFTRVSVFVDWI 221
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 224 FCGGSLISPNYVMTAAHCITS---PLVGTMV 251
FCGGSL+ +++TA C +S PL G V
Sbjct: 23 FCGGSLVKEQWILTARQCFSSCHMPLTGYEV 53
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-----HRVMQNILHPNY 337
GG+L+ +++TAAH + P L L ++ + + H + + +HP+Y
Sbjct: 114 GGALLGDRWILTAAHTLY-PKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDY 172
Query: 338 TTEGTSQYH-DIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKE 394
+ + + DIALL++ V L P CL N SGFG + + K
Sbjct: 173 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM---EEKI 229
Query: 395 SLRLMKVVLDIINNDTCS-----KQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
+ L V L + N C K + S + CA + +D CQGDSGG P
Sbjct: 230 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP 289
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ + GI S+G C YT+V YV WI
Sbjct: 290 NTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 323
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-----HRVMQNILHPNY 337
GG+L+ +++TAAH + P L L ++ + + H + + +HP+Y
Sbjct: 182 GGALLGDRWILTAAHTLY-PKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDY 240
Query: 338 TTEGTSQYH-DIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKE 394
+ + + DIALL++ V L P CL N SGFG + + K
Sbjct: 241 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM---EEKI 297
Query: 395 SLRLMKVVLDIINNDTCS-----KQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
+ L V L + N C K + S + CA + +D CQGDSGG P
Sbjct: 298 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDP 357
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ + GI S+G C YT+V YV WI
Sbjct: 358 NTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 391
>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|B Chain B, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
pdb|1M9U|C Chain C, Crystal Structure Of Earthworm Fibrinolytic Enzyme
Component A From Eisenia Fetida
Length = 241
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 16/214 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CG SL+S ++A+HC+ L V GL + S T + V +H NY
Sbjct: 29 CGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTAN-VDSYTMHENYGAGT 87
Query: 342 TSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESLRLM 399
S +DIA+L +A + ++ A L N ++ T + SG+G+ + + + L
Sbjct: 88 ASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDI-LQ 146
Query: 400 KVVLDIINNDTCSKQ-----ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYN 454
K + +I C+ + + +C AG C GDSGGPL PD
Sbjct: 147 KSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLN--CPDGGTR- 203
Query: 455 IIGITSYGRQCGHA----NTPAIYTRVSYYVPWI 484
++G+TS+ G + P++YTRVS Y+ WI
Sbjct: 204 VVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 8 HCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIAPP 67
HC+ L V GL + S T + V +H NY S +DIA+L +A
Sbjct: 44 HCVDGVLPNNIRVIAGLWQQSDTSGTQTAN-VDSYTMHENYGAGTASYSNDIAILHLATS 102
Query: 68 VEFSETLKPACL--NRAHNVKSPTAIASGFGKLN 99
+ ++ A L N ++ T + SG+G+ +
Sbjct: 103 ISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTD 136
>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 98
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 405 IINNDTC-SKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGITSYGR 463
++++ +C S + + +C + GGKD+CQGDSGGP+ +C + GI S+G
Sbjct: 17 VLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPV------VCNGQLQGIVSWGY 70
Query: 464 QCGHANTPAIYTRVSYYVPWIVHTV 488
C N P +YT+V YV WI T+
Sbjct: 71 GCAQKNKPGVYTKVCNYVNWIQQTI 95
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 283 GGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-----HRVMQNILHPNY 337
GG+L+ +++TAAH + P L L ++ + + H + + +HP+Y
Sbjct: 114 GGALLGDRWILTAAHTLY-PKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDY 172
Query: 338 TTEGTSQYH-DIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKE 394
+ + + DIALL++ V L P CL N SGFG + + K
Sbjct: 173 RQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVM---EEKI 229
Query: 395 SLRLMKVVLDIINNDTCS-----KQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTIMP 448
+ L V L + N C K + S + CA + +D CQGD+GG P
Sbjct: 230 AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDP 289
Query: 449 DLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+ + GI S+G C YT+V YV WI
Sbjct: 290 NTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWI 323
>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin)
pdb|1FUJ|B Chain B, Pr3 (Myeloblastin)
pdb|1FUJ|C Chain C, Pr3 (Myeloblastin)
pdb|1FUJ|D Chain D, Pr3 (Myeloblastin)
Length = 221
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 21/211 (9%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGG+LI P++V+TAAHC+ + V G + T V Q L+ NY E
Sbjct: 28 FCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFLN-NYDAE 86
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNYFDTKESLRL 398
++ +DI L++++ P S ++ L + +A G+G++ D + L
Sbjct: 87 --NKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQV-L 143
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
++ + ++ C +C V C GDSGGPL +C I GI
Sbjct: 144 QELNVTVVTF-FCRPHN-------ICTFVPRRKAGICFGDSGGPL------ICDGIIQGI 189
Query: 459 TSYG-RQCGHANTPAIYTRVSYYVPWIVHTV 488
S+ C P +TRV+ YV WI T+
Sbjct: 190 DSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
I+GG A+ P+ A + G+ FCGG+LI P++V+TAAHC+
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSH-----FCGGTLIHPSFVLTAAHCL 46
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL 368
HP Y DIAL+K+ PV FS+ + P CL
Sbjct: 87 HPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCL 120
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y D
Sbjct: 41 AAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IAL+K+ PV FS+ + P CL
Sbjct: 100 IALMKLKKPVAFSDYIHPVCL 120
>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|H Chain H, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|F Chain F, Thrombin:hirudin 51-65 Complex
pdb|1YCP|K Chain K, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 150
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------L 333
CG SLIS +V+TAAHC+ P + L+ ++ R ++ I +
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYI 86
Query: 334 HPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL 368
HP Y + DIALLK+ P+E S+ + P CL
Sbjct: 87 HPRYNWKENLD-RDIALLKLKRPIELSDYIHPVCL 120
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI-------LHPNYTTEGTSQYHD 58
AAHC+ P + L+ ++ R ++ I +HP Y + D
Sbjct: 41 AAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLD-RD 99
Query: 59 IALLKIAPPVEFSETLKPACL 79
IALLK+ P+E S+ + P CL
Sbjct: 100 IALLKLKRPIELSDYIHPVCL 120
>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 99
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 388 NYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTI 446
N T E +L + L I++ C K + I+ + CA A G D+C GDSGGPL +
Sbjct: 1 NALKTPE--KLQQAALPIVSEADCKKSWGSKITDVMTCAG--ASGVDSCMGDSGGPL--V 54
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
++ + GI S+G +TPA+Y+RV+ +PW+
Sbjct: 55 CQKDGVWTLAGIVSWGSGVCSTSTPAVYSRVTALMPWV 92
>pdb|2JET|B Chain B, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 128
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLIS ++V+TAAHC + V G + S + ++ Q +P +
Sbjct: 23 FCGGSLISEDWVVTAAHC---GVKTSDVVVAGEFDQGSDEENIQVLKIAQVFKNPKFNM- 78
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNY 389
+ +DI LLK+A P +FSET+ CL + P + +G+GK Y
Sbjct: 79 -FTVRNDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTVCATTGWGKTKY 128
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 57 HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNY 100
+DI LLK+A P +FSET+ CL + P + +G+GK Y
Sbjct: 83 NDITLLKLATPAQFSETVSAVCLPNVDDDFPPGTVCATTGWGKTKY 128
Score = 36.6 bits (83), Expect = 0.039, Method: Composition-based stats.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 224 FCGGSLISPNYVMTAAHC 241
FCGGSLIS ++V+TAAHC
Sbjct: 23 FCGGSLISEDWVVTAAHC 40
>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|G Chain G, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|C Chain C, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|H Chain H, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|C Chain C, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|H Chain H, Bovine Chymotrypsin Complexed To Bpti
pdb|1VGC|C Chain C, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|C Chain C, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|C Chain C, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|C Chain C, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|C Chain C, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|C Chain C, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|C Chain C, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|E Chain E, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|F Chain F, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|C Chain C, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|G Chain G, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|C Chain C, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|G Chain G, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|G Chain G, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|G Chain G, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|G Chain G, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|G Chain G, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|G Chain G, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|G Chain G, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|G Chain G, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|G Chain G, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|C Chain C, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|G Chain G, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|C Chain C, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|G Chain G, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|C Chain C, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|G Chain G, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|G Chain G, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|C Chain C, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|C Chain C, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|C Chain C, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|G Chain G, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|C Chain C, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|C Chain C, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
Length = 97
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 397 RLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
RL + L +++N C K T I + +CA A G +C GDSGGPL + + +
Sbjct: 6 RLQQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTL 61
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+GI S+G +TP +Y RV+ V W+ T+
Sbjct: 62 VGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94
>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g)
Chymotrypsin
Length = 99
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 388 NYFDTKESLRLMKVVLDIINNDTCSKQETTLISSQL-CATVMAGGKDTCQGDSGGPLQTI 446
N T E +L + L I++ C K + I+ + CA A G D+C GDSGGPL +
Sbjct: 1 NALKTPE--KLQQAALPIVSEADCKKSWGSKITDVMTCAG--ASGVDSCMGDSGGPL--V 54
Query: 447 MPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
++ + GI S+G +TP +Y+RV+ +PW+
Sbjct: 55 CQKDGVWTLAGIVSWGSGVCSTSTPGVYSRVTALMPWV 92
>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|3RU4|E Chain E, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 96
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 397 RLMKVVLDIINNDTCSKQETTLI-SSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
RL + L +++N C K T I + +CA A G +C GDSGGPL + + +
Sbjct: 5 RLQQASLPLLSNTNCKKYWGTKIKDAMICAG--ASGVSSCMGDSGGPL--VCKKNGAWTL 60
Query: 456 IGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
+GI S+G +TP +Y RV+ V W+ T+
Sbjct: 61 VGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 93
>pdb|1KDQ|A Chain A, Crystal Structure Analysis Of The Mutant S189d Rat
Chymotrypsin
Length = 131
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLIS ++V+TAAHC + V G + S + ++ Q +P +
Sbjct: 26 FCGGSLISEDWVVTAAHC---GVKTSDVVVAGEFDQGSDEENIQVLKIAQVFKNPKFNM- 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNY 389
+ +DI LLK+A P +FSET+ L + P + +G+GK Y
Sbjct: 82 -FTVRNDITLLKLATPAQFSETVSAVSLPNVDDDFPPGTVCATTGWGKTKY 131
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+ G A G +P Q V ++ G FCGGSLIS ++V+TAAHC
Sbjct: 1 IVNGEDAIPGSWPWQ--VSLQDKTGFH-----FCGGSLISEDWVVTAAHC 43
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 57 HDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAI--ASGFGKLNY 100
+DI LLK+A P +FSET+ L + P + +G+GK Y
Sbjct: 86 NDITLLKLATPAQFSETVSAVSLPNVDDDFPPGTVCATTGWGKTKY 131
>pdb|3H7T|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
pdb|3H7T|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-D1 (Smipp-S-D1)
Length = 235
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 273 GTMKDVKWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI 332
G + D K FCGGS+++ N+V+TAA C+ + +G SY T + + I
Sbjct: 17 GVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYG----SSYRTTKGTSVMAKKI 72
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSE--TLKPACLNRAHNVKSPTAI-ASGFGKLNY 389
Y + ++ A+++ P++ + T K + ++ + T++ SG+G N+
Sbjct: 73 YIVRY--HPLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNF 130
Query: 390 FDTKESLRLMKVVLDIINNDTCSKQETTLISSQLC--ATVMAGGK-DTC---QGDSGGPL 443
+ S LM+ +++ +C +Q + + + AGG+ D GD+G P
Sbjct: 131 KSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPA 190
Query: 444 QTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYV 481
+ ++G+ SY + P+++ RV YYV
Sbjct: 191 ------VQNGTLVGVASYISSM-PSEFPSVFLRVGYYV 221
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCI 242
IIGG ++ + P G + D K FCGGS+++ N+V+TAA C+
Sbjct: 1 IIGGKKSDITKEPWAV--------GVLVDEKPFCGGSILTANFVITAAQCV 43
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
C G+++S +V+TAAHC T K + K+S + + HPNY G
Sbjct: 45 CMGAVVSEYFVLTAAHCFTVD-DKEHSI------KVSVGGEKRDLEIEVVLFHPNYNING 97
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
+ +D+AL+K+ +++ +T++P CL RA + T +L
Sbjct: 98 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 157
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
F ++E +L + + I N D +C + + IS + +
Sbjct: 158 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 217
Query: 431 G-------KDTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
G +TC+GDSGGPL I+ + +G+ S+G
Sbjct: 218 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 254
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 43 ILHPNYTTEGTSQY-------HDIALLKIAPPVEFSETLKPACL 79
+ HPNY G + +D+AL+K+ +++ +T++P CL
Sbjct: 88 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 131
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
C G+++S +V+TAAHC T + K+S + + HPNY G
Sbjct: 252 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 304
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
+ +D+AL+K+ +++ +T++P CL RA + T +L
Sbjct: 305 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 364
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
F ++E +L + + I N D +C + + IS + +
Sbjct: 365 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 424
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
G +TC+GDSGGPL I+ + +G+ S+G
Sbjct: 425 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 461
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 43 ILHPNYTTEGTSQY-------HDIALLKIAPPVEFSETLKPACL 79
+ HPNY G + +D+AL+K+ +++ +T++P CL
Sbjct: 295 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 338
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
C G+++S +V+TAAHC T + K+S + + HPNY G
Sbjct: 244 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 296
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
+ +D+AL+K+ +++ +T++P CL RA + T +L
Sbjct: 297 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 356
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
F ++E +L + + I N D +C + + IS + +
Sbjct: 357 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 416
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
G +TC+GDSGGPL I+ + +G+ S+G
Sbjct: 417 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 453
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 43 ILHPNYTTEGTSQY-------HDIALLKIAPPVEFSETLKPACL 79
+ HPNY G + +D+AL+K+ +++ +T++P CL
Sbjct: 287 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 330
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
C G+++S +V+TAAHC T + K+S + + HPNY G
Sbjct: 486 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 538
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
+ +D+AL+K+ +++ +T++P CL RA + T +L
Sbjct: 539 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 598
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
F ++E +L + + I N D +C + + IS + +
Sbjct: 599 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 658
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
G +TC+GDSGGPL I+ + +G+ S+G
Sbjct: 659 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 695
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 43 ILHPNYTTEGTSQY-------HDIALLKIAPPVEFSETLKPACL 79
+ HPNY G + +D+AL+K+ +++ +T++P CL
Sbjct: 529 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 572
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
C G+++S +V+TAAHC T + K+S + + HPNY G
Sbjct: 477 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 529
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
+ +D+AL+K+ +++ +T++P CL RA + T +L
Sbjct: 530 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 589
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
F ++E +L + + I N D +C + + IS + +
Sbjct: 590 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 649
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
G +TC+GDSGGPL I+ + +G+ S+G
Sbjct: 650 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 686
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 43 ILHPNYTTEGTSQY-------HDIALLKIAPPVEFSETLKPACL 79
+ HPNY G + +D+AL+K+ +++ +T++P CL
Sbjct: 520 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 563
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
C G+++S +V+TAAHC T + K+S + + HPNY G
Sbjct: 496 CMGAVVSEYFVLTAAHCFTVDDKEHS-------IKVSVGGEKRDLEIEVVLFHPNYNING 548
Query: 342 TSQY-------HDIALLKIAPPVEFSETLKPACL------NRAHNVKSPTAIASGFGKL- 387
+ +D+AL+K+ +++ +T++P CL RA + T +L
Sbjct: 549 KKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELL 608
Query: 388 ------NYFDTKESLRLMKVVLDIINND---TCSK--------QETTLISSQLCATVMAG 430
F ++E +L + + I N D +C + + IS + +
Sbjct: 609 PAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCT 668
Query: 431 GK-------DTCQGDSGGPLQTIMPDLCMYNIIGITSYG 462
G +TC+GDSGGPL I+ + +G+ S+G
Sbjct: 669 GGVSPYADPNTCRGDSGGPL--IVHKRSRFIQVGVISWG 705
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 43 ILHPNYTTEGTSQY-------HDIALLKIAPPVEFSETLKPACL 79
+ HPNY G + +D+AL+K+ +++ +T++P CL
Sbjct: 539 LFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICL 582
>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A
Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms
Resolution
Length = 218
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCG +LI+PN+VM+AAHC+ + + V G T + V Q I Y +
Sbjct: 25 FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFEDGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DI +L++ + ++ PA R N +A G+G L S+
Sbjct: 82 PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L ++ + ++ + C + S +C V C GDSG PL +C I
Sbjct: 140 -LQELNVTVVTS-LCRR-------SNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
GI S+ R C P + V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+GG RA+ +P + GG FCG +LI+PN+VM+AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQL--RGGH------FCGATLIAPNFVMSAAHC 42
>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl
101, 146
Length = 218
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCG +LI+PN+VM+AAHC+ + + V G T + V Q I Y +
Sbjct: 25 FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFEDGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DI +L++ + ++ PA R N +A G+G L S+
Sbjct: 82 PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L ++ + ++ + C + S +C V C GDSG PL +C I
Sbjct: 140 -LQELNVTVVTS-LCRR-------SNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
GI S+ R C P + V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+GG RA+ +P + GG FCG +LI+PN+VM+AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQL--AGGH------FCGATLIAPNFVMSAAHC 42
>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human
Leukocyte Elastase In A Complex With A Valine
Chloromethyl Ketone Inhibitor
pdb|1H1B|A Chain A, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|1H1B|B Chain B, Crystal Structure Of Human Neutrophil Elastase Complexed
With An Inhibitor (Gw475151)
pdb|2Z7F|E Chain E, Crystal Structure Of The Complex Of Human Neutrophil
Elastase With 12SLPI
pdb|3Q76|A Chain A, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q76|B Chain B, Structure Of Human Neutrophil Elastase (uncomplexed)
pdb|3Q77|A Chain A, Structure Of Human Neutrophil Elastase In Complex With A
Dihydropyrimidone Inhibitor
Length = 218
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCG +LI+PN+VM+AAHC+ + + V G T + V Q I Y +
Sbjct: 25 FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFENGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DI +L++ + ++ PA R N +A G+G L S+
Sbjct: 82 PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L ++ + ++ C + S +C V C GDSG PL +C I
Sbjct: 140 -LQELNVTVV-TSLCRR-------SNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
GI S+ R C P + V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+GG RA+ +P + GG FCG +LI+PN+VM+AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQL--RGGH------FCGATLIAPNFVMSAAHC 42
>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte
Elastase (Pmn Elastase) And The Third Domain Of The
Turkey Ovomucoid Inhibitor
Length = 218
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCG +LI+PN+VM+AAHC+ + + V G T + V Q I Y +
Sbjct: 25 FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFENGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DI +L++ + ++ PA R N +A G+G L S+
Sbjct: 82 PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L ++ + ++ C + S +C V C GDSG PL +C I
Sbjct: 140 -LQELNVTVV-TSLCRR-------SNVCTLVRGRQAGVCFGDSGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
GI S+ R C P + V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+GG RA+ +P + GG FCG +LI+PN+VM+AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQL--RGGH------FCGATLIAPNFVMSAAHC 42
>pdb|3H7O|A Chain A, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
pdb|3H7O|B Chain B, Crystal Structure Of Scabies Mite Inactivated Protease
Paralogue S-I1 (Smipp-S-I1)
Length = 228
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEG 341
CGG+++S +V+TAAHC+ KP + + + + ++ Y E
Sbjct: 28 CGGAILSQWFVLTAAHCVFD--QKPETIVIQYESTNLWEDPGKSDPYVSHVYLSFYRQE- 84
Query: 342 TSQYHDIALLKIAPPVEFSE-TLKPACL-NRAHNVKSPTAI-ASGFGKLNYFDTKESLRL 398
+ +DIA+L+++ P++ KPA L + K+ + + SG+G D K+ L
Sbjct: 85 -TMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDH-DL 142
Query: 399 MKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNIIGI 458
L +++ D C + + S G GD+G P T+ D ++G+
Sbjct: 143 KSAQLTVVDLDECRTKYGPIFLSLQVFCAQKVGVSLESGDAGDP--TVQQD----TLVGV 196
Query: 459 TSYGRQCGHANTPAIYTRVSYYVPWI 484
+Y + P ++T+V YV WI
Sbjct: 197 AAYFPKRPEG-APEVFTKVGSYVSWI 221
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 225 CGGSLISPNYVMTAAHCI 242
CGG+++S +V+TAAHC+
Sbjct: 28 CGGAILSQWFVLTAAHCV 45
>pdb|1MTN|B Chain B, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1MTN|F Chain F, Bovine Alpha-Chymotrypsin:bpti Crystallization
pdb|1AB9|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin
pdb|1CA0|B Chain B, Bovine Chymotrypsin Complexed To Appi
pdb|1CA0|G Chain G, Bovine Chymotrypsin Complexed To Appi
pdb|1CBW|B Chain B, Bovine Chymotrypsin Complexed To Bpti
pdb|1CBW|G Chain G, Bovine Chymotrypsin Complexed To Bpti
pdb|1AFQ|B Chain B, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed
With A Synthetic Inhibitor
pdb|1VGC|B Chain B, Gamma-Chymotrypsin L-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|2VGC|B Chain B, Gamma-Chymotrypsin D-Para-Chloro-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|3VGC|B Chain B, Gamma-Chymotrypsin L-Naphthyl-1-Acetamido Boronic Acid
Acid Inhibitor Complex
pdb|4VGC|B Chain B, Gamma-Chymotrypsin D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1HJA|B Chain B, Lys 18 Variant Of Turkey Ovomucoid Inhibitor Third Domain
Complexed With Alpha-Chymotrypsin
pdb|1GG6|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With N-Acetyl-
Phenylalanine Trifluoromethyl Ketone Bound At The Active
Site
pdb|1GGD|B Chain B, Crystal Stucture Of Gamma Chymotrypsin With
N-Acetyl-Leucil- Phenylalanine Aldehyde Bound At The
Active Site
pdb|1N8O|B Chain B, Crystal Structure Of A Complex Between Bovine Chymotrypsin
And Ecotin
pdb|1YPH|C Chain C, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|1YPH|D Chain D, High Resolution Structure Of Bovine Alpha-Chymotrypsin
pdb|2P8O|B Chain B, Crystal Structure Of A Benzohydroxamic AcidVANADATE
Complex Bound To Chymotrypsin A
pdb|1GMH|F Chain F, Refined Crystal Structure Of "aged" And "non-Aged"
Organophosphoryl Conjugates Of Gamma-Chymotrypsin
pdb|2CHA|B Chain B, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2CHA|F Chain F, The Structure Of Crystalline Alpha-Chymotrypsin, v.The
Atomic Structure Of Tosyl-Alpha-Chymotrypsin At 2
Angstroms Resolution
pdb|2GCH|F Chain F, Refined Crystal Structure Of Gamma-chymotrypsin At 1.9
Angstroms Resolution
pdb|4GCH|F Chain F, Structure And Activity Of Two Photoreversible Cinnamates
Bound To Chymotrypsin
pdb|5GCH|F Chain F, Chemistry Of Caged Enzymes II. Photoactivation Of
Inhibited Chymotrypsin
pdb|6GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|7GCH|F Chain F, Structure Of Chymotrypsin-Trifluoromethyl Ketone Inhibitor
Complexes. Comparison Of Slowly And Rapidly
Equilibrating Inhibitors
pdb|1CHO|F Chain F, Crystal And Molecular Structures Of The Complex Of Alpha-
Chymotrypsin With Its Inhibitor Turkey Ovomucoid Third
Domain At 1.8 Angstroms Resolution
pdb|1GHA|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|1GMC|F Chain F, The X-Ray Crystal Structure Of The Tetrahedral
Intermediate Of Gamma- Chymotrypsin In Hexane
pdb|1GMD|F Chain F, X-Ray Crystal Structure Of Gamma-Chymotrypsin In Hexane
pdb|3GCT|F Chain F, Structure Of Gamma-Chymotrypsin In The Range pH 2.0 To pH
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low pH
pdb|4CHA|B Chain B, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|4CHA|F Chain F, Structure Of Alpha-Chymotrypsin Refined At 1.68 Angstroms
Resolution
pdb|5CHA|B Chain B, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|5CHA|F Chain F, The Refinement And The Structure Of The Dimer Of Alpha-
Chymotrypsin At 1.67-Angstroms Resolution
pdb|6CHA|B Chain B, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|6CHA|F Chain F, Structure Of A Tetrahedral Transition State Complex Of
Alpha-Chymotrypsin At 1.8-Angstroms Resolution
pdb|8GCH|F Chain F, Gamma-Chymotrypsin Is A Complex Of Alpha-Chymotrypsin With
Its Own Autolysis Products
pdb|3BG4|B Chain B, The Crystal Structure Of Guamerin In Complex With
Chymotrypsin And The Development Of An Elastase-Specific
Inhibitor
pdb|1GCT|B Chain B, Is Gamma-Chymotrypsin A Tetrapeptide Acyl-Enzyme Adduct Of
Gamma- Chymotrypsin?
pdb|2GCT|B Chain B, Structure Of Gamma-Chymotrypsin In The Range Ph 2.0 To Ph
10.5 Suggests That Gamma-Chymotrypsin Is A Covalent
Acyl-Enzyme Adduct At Low Ph
pdb|1GHB|F Chain F, A Second Active Site In Chymotrypsin? The X-Ray Crystal
Structure Of N-Acetyl-D-Tryptophan Bound To
Gamma-Chymotrypsin
pdb|2GMT|B Chain B, Three-Dimensional Structure Of Chymotrypsin Inactivated
With (2s) N- Acetyl-L-Alanyl-L-Phenylalanyl-Chloroethyl
Ketone: Implications For The Mechanism Of Inactivation
Of Serine Proteases By Chloroketones
pdb|3GCH|B Chain B, Chemistry Of Caged Enzymes. Binding Of Photoreversible
Cinnamates To Chymotrypsin
pdb|3RU4|D Chain D, Crystal Structure Of The Bowman-Birk Serine Protease
Inhibitor Btci In Complex With Trypsin And Chymotrypsin
Length = 131
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ N+V+TAAHC + V G + S S + I ++ + N
Sbjct: 26 FCGGSLINENWVVTAAHCGVT---TSDVVVAGEFDQGSSS--EKIQKLKIAKVFKNSKYN 80
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNY 389
+ +DI LLK++ FS+T+ CL A + T + +G+G Y
Sbjct: 81 SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 131
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+ G A G +P Q V ++ G FCGGSLI+ N+V+TAAHC
Sbjct: 1 IVNGEEAVPGSWPWQ--VSLQDKTGFH-----FCGGSLINENWVVTAAHC 43
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 57 HDIALLKIAPPVEFSETLKPACLNRAHN--VKSPTAIASGFGKLNY 100
+DI LLK++ FS+T+ CL A + T + +G+G Y
Sbjct: 86 NDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRY 131
>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase
Length = 218
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCG +LI+PN+VM+AAHC+ + + V G T + V Q I Y +
Sbjct: 25 FCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAV-QRIFENGY--D 81
Query: 341 GTSQYHDIALLKIAPPVEFSETLK----PACLNRAHNVKSPTAIASGFGKLNYFDTKESL 396
+ +DI +L++ + ++ PA R N +A G+G L S+
Sbjct: 82 PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGN--GVQCLAMGWGLLGRNRGIASV 139
Query: 397 RLMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNII 456
L ++ + ++ C + S +C V C GD G PL +C I
Sbjct: 140 -LQELNVTVV-TSLCRR-------SNVCTLVRGRQAGVCFGDXGSPL------VCNGLIH 184
Query: 457 GITSYGR-QCGHANTPAIYTRVSYYVPWI 484
GI S+ R C P + V+ +V WI
Sbjct: 185 GIASFVRGGCASGLYPDAFAPVAQFVNWI 213
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+GG RA+ +P + GG FCG +LI+PN+VM+AAHC
Sbjct: 1 IVGGRRARPHAWPFMVSLQL--RGGH------FCGATLIAPNFVMSAAHC 42
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
FCGGSLI+ +V++AAHC S + VR G + + I HPN+
Sbjct: 24 FCGGSLINSQWVVSAAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--N 77
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGK 386
G + +DI L+K++ P + + L R+ + SG+G
Sbjct: 78 GNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGN 123
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPL 246
I+GG P+Q ++ FCGGSLI+ +V++AAHC S +
Sbjct: 1 IVGGYTCAANSIPYQV---------SLNSGSHFCGGSLINSQWVVSAAHCYKSRI 46
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC S + VR G + + I HPN+ G + +DI L+K++
Sbjct: 38 AAHCYKSRI----QVRLGEHNIDVLEGNEQFINAAKIITHPNF--NGNTLDNDIMLIKLS 91
Query: 66 PPVEFSETLKPACLNRAHNVKSPTAIASGFGK 97
P + + L R+ + SG+G
Sbjct: 92 SPATLNSRVATVSLPRSCAAAGTECLISGWGN 123
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 28/176 (15%)
Query: 332 ILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVK-SPTAIASGFGKLNYF 390
I HP+ +T DI L+K+ V +E + P CL V SG+G+
Sbjct: 178 IFHPDNSTV------DIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANL 231
Query: 391 DTKESLRLMKVVLDIINNDTCSKQ------------------ETTLISSQLCATVMAGGK 432
+ E L+ V+L + + + C + + L CA + +
Sbjct: 232 NFTEHLKY--VMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQE 289
Query: 433 DTCQGDSGGPLQTIMPDLCMYNIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTV 488
DTC GD+G D + GI S+ + C A +Y RV+ + WI T+
Sbjct: 290 DTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRTAEY-GVYVRVTSILDWIQTTI 344
>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp
pdb|1AE5|A Chain A, Human Heparin Binding Protein
Length = 225
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 51/224 (22%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSP--------LGKPRYVRFGLITKLSYSV---TDNIHR 327
+ FCGG+LI +VMTAA C S LG R ++ ++S+ ++N +
Sbjct: 23 RHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYD 82
Query: 328 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEF--SETLKPACLNRAHNVKSPTAIASGFG 385
QN+ +D+ LL++ S T+ P L A +G+G
Sbjct: 83 PQQNL-------------NDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWG 129
Query: 386 KLNYFDTKESLRLMK----VVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGG 441
+ RL + V + + D C + +C V+ C GD G
Sbjct: 130 S-----QRSGGRLSRFPRFVNVTVTPEDQCRP-------NNVCTGVLTRRGGICNGDGGT 177
Query: 442 PLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
PL +C G+ S+ CG P +TRV+ + WI
Sbjct: 178 PL------VCEGLAHGVASFSLGPCGRG--PDFFTRVALFRDWI 213
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 20/89 (22%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS--PLVGT 249
I+GG +A+ +FP A + + FCGG+LI +VMTAA C S P V T
Sbjct: 1 IVGGRKARPRQFPFLASI--------QNQGRHFCGGALIHARFVMTAASCFQSQNPGVST 52
Query: 250 MV----------KAPLRTLLFISMAEVGF 268
+V + +T SM+E G+
Sbjct: 53 VVLGAYDLRRRERQSRQTFSISSMSENGY 81
>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein
(cap37)
Length = 225
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 86/224 (38%), Gaps = 51/224 (22%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSP--------LGKPRYVRFGLITKLSYSV---TDNIHR 327
+ FCGG+LI +VMTAA C S LG R ++ ++S+ ++N +
Sbjct: 23 RHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYD 82
Query: 328 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEF--SETLKPACLNRAHNVKSPTAIASGFG 385
QN+ +D+ LL++ S T+ P L A +G+G
Sbjct: 83 PQQNL-------------NDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWG 129
Query: 386 KLNYFDTKESLRLMK----VVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGG 441
+ RL + V + + D C + +C V+ C GD G
Sbjct: 130 S-----QRSGGRLSRFPRFVNVTVTPEDQCRP-------NNVCTGVLTRRGGICNGDQGT 177
Query: 442 PLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
PL +C G+ S+ CG P +TRV+ + WI
Sbjct: 178 PL------VCEGLAHGVASFSLGPCGRG--PDFFTRVALFRDWI 213
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 20/89 (22%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS--PLVGT 249
I+GG +A+ +FP A + + FCGG+LI +VMTAA C S P V T
Sbjct: 1 IVGGRKARPRQFPFLASI--------QNQGRHFCGGALIHARFVMTAASCFQSQNPGVST 52
Query: 250 MV----------KAPLRTLLFISMAEVGF 268
+V + +T SM+E G+
Sbjct: 53 VVLGAYDLRRRERQSRQTFSISSMSENGY 81
>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin
pdb|1BHX|F Chain F, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|C Chain C, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
Length = 105
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQTIMPDLCMY 453
L V L I+ C I+ + CA GK D C+GDSGGP P +
Sbjct: 6 LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRW 65
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWIVHTVWPDQF 493
+GI S+G C YT V WI + DQF
Sbjct: 66 YQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI--DQF 103
>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of
Human Fibrinogen Bound To Bovine Thrombin At 2.3
Angstroms Resolution
pdb|1UCY|E Chain E, Thrombin Complexed With Fibrinopeptide A Alpha (Residues
7- 19). Three Complexes, One With Epsilon-Thrombin And
Two With Alpha-Thrombin
pdb|1VIT|G Chain G, Thrombin:hirudin 51-65 Complex
pdb|1YCP|M Chain M, The Crystal Structure Of Fibrinogen-Aa Peptide 1-23 (F8y)
Bound To Bovine Thrombin Explains Why The Mutation Of
Phe-8 To Tyrosine Strongly Inhibits Normal Cleavage At
Arginine-16
Length = 109
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQTIMPDLCMY 453
L V L ++ C I+ + CA G GK D C+GDSGGP P +
Sbjct: 10 LQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRW 69
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+GI S+G C YT V WI
Sbjct: 70 YQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 100
>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein
(Cap37)
Length = 225
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 84/221 (38%), Gaps = 51/221 (23%)
Query: 282 CGGSLISPNYVMTAAHCITSP--------LGKPRYVRFGLITKLSYSV---TDNIHRVMQ 330
CGG+LI +VMTAA C S LG R ++ ++S+ ++N + Q
Sbjct: 26 CGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENGYDPQQ 85
Query: 331 NILHPNYTTEGTSQYHDIALLKIAPPVEF--SETLKPACLNRAHNVKSPTAIASGFGKLN 388
N+ +D+ LL++ S T+ P L A +G+G
Sbjct: 86 NL-------------NDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGS-- 130
Query: 389 YFDTKESLRLMK----VVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPLQ 444
+ RL + V + + D C + +C V+ C GD G PL
Sbjct: 131 ---QRSGGRLSRFPRFVNVTVTPEDQCRP-------NNVCTGVLTRRGGICNGDGGTPL- 179
Query: 445 TIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
+C G+ S+ CG P +TRV+ + WI
Sbjct: 180 -----VCEGLAHGVASFSLGPCGRG--PDFFTRVALFRDWI 213
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 20/89 (22%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITS--PLVGT 249
I+GG +A+ +FP A + + G+ + CGG+LI +VMTAA C S P V T
Sbjct: 1 IVGGRKARPRQFPFLASI---QNQGSHE-----CGGALIHARFVMTAASCFQSQNPGVST 52
Query: 250 MV----------KAPLRTLLFISMAEVGF 268
+V + +T SM+E G+
Sbjct: 53 VVLGAYDLRRRERQSRQTFSISSMSENGY 81
>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor
pdb|3PO1|C Chain C, Thrombin In Complex With Benzothiazole Guanidine
Length = 102
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 398 LMKVVLDIINNDTCSKQETTLISSQL-CATVMAG-GK--DTCQGDSGGPLQTIMPDLCMY 453
L V L I+ C I+ + CA GK D C+GDSGGP P +
Sbjct: 6 LQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRW 65
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
+GI S+G C YT V WI
Sbjct: 66 YQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 96
>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
pdb|2ODQ|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3-
And C5- Convertase Of Human Complement
Length = 509
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 32/105 (30%)
Query: 282 CGGSLISPNYVMTAAHCITS---------PLGKPR--YVRFGLITKLSYSVTDNIHRVMQ 330
C G+LIS +V+TAAHC +G P+ + + LI K
Sbjct: 249 CRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKA------------- 295
Query: 331 NILHPNY-----TTEGTSQYH--DIALLKIAPPVEFSETLKPACL 368
++ P + +G +++ DIALLK+A V+ S +P CL
Sbjct: 296 -VISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICL 339
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 225 CGGSLISPNYVMTAAHCI 242
C G+LIS +V+TAAHC
Sbjct: 249 CRGALISDQWVLTAAHCF 266
>pdb|2I6Q|A Chain A, Complement Component C2a
pdb|2I6S|A Chain A, Complement Component C2a
Length = 517
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 32/105 (30%)
Query: 282 CGGSLISPNYVMTAAHCITS---------PLGKPR--YVRFGLITKLSYSVTDNIHRVMQ 330
C G+LIS +V+TAAHC +G P+ + + LI K
Sbjct: 257 CRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFLIEKA------------- 303
Query: 331 NILHPNY-----TTEGTSQYH--DIALLKIAPPVEFSETLKPACL 368
++ P + +G +++ DIALLK+A V+ S +P CL
Sbjct: 304 -VISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICL 347
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 225 CGGSLISPNYVMTAAHCI 242
C G+LIS +V+TAAHC
Sbjct: 257 CRGALISDQWVLTAAHCF 274
>pdb|2HNT|C Chain C, Crystallographic Structure Of Human Gamma-Thrombin
Length = 70
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
I+ GS A+ G P Q + F + + CG SLIS +V+TAAHC+ P
Sbjct: 1 IVEGSDAEIGMSPWQVML-FRKSPQEL-----LCGASLISDRWVLTAAHCLLYP 48
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 281 FCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKL 317
CG SLIS +V+TAAHC+ P + L+ ++
Sbjct: 27 LCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRI 63
>pdb|1P3C|A Chain A, Glutamyl Endopeptidase From Bacillus Intermedius
pdb|1P3E|A Chain A, Structure Of Glu Endopeptidase In Complex With Mpd
Length = 215
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 17/145 (11%)
Query: 282 CGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPN-YTTE 340
C G+LI+PN ++T HC+ + + + + ++ S N M P+ Y
Sbjct: 32 CTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINT 91
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGF--------GKLNYFD- 391
G SQY D A++K T+ + + N+ T SG+ GK++ ++
Sbjct: 92 GASQY-DFAVIK--TDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEM 148
Query: 392 ----TKESLRLMKVVLDIINNDTCS 412
T+E L +D + ++ S
Sbjct: 149 SGSVTREDTNLAYYTIDTFSGNSGS 173
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 225 CGGSLISPNYVMTAAHCI 242
C G+LI+PN ++T HC+
Sbjct: 32 CTGTLIAPNKILTNGHCV 49
>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The
Complex Formed By Porcine Kallikrein A And The Bovine
Pancreatic Trypsin Inhibitor. Crystallization, Patterson
Search, Structure Determination, Refinement, Structure
And Comparison With Its Components And With The Bovine
Trypsin- Pancreatic Trypsin Inhibitor Complex
pdb|2PKA|A Chain A, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|2PKA|X Chain X, Refined 2 Angstroms X-Ray Crystal Structure Of Porcine
Pancreatic Kallikrein A, A Specific Trypsin-Like Serine
Proteinase. Crystallization, Structure Determination,
Crystallographic Refinement, Structure And Its
Comparison With Bovine Trypsin
pdb|1HIA|A Chain A, Kallikrein Complexed With Hirustasin
pdb|1HIA|X Chain X, Kallikrein Complexed With Hirustasin
Length = 80
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
IIGG + P Q + + CGG L++P +V+TAAHC
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSS--------FQCGGVLVNPKWVLTAAHC 42
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 282 CGGSLISPNYVMTAAHC 298
CGG L++P +V+TAAHC
Sbjct: 26 CGGVLVNPKWVLTAAHC 42
>pdb|1EPT|A Chain A, Refined 1.8 Angstroms Resolution Crystal Structure Of
Porcine Epsilon-Trypsin
Length = 43
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHC 241
I+GG P+Q ++ FCGGSLI+ +V++AAHC
Sbjct: 1 IVGGYTCAANSIPYQV---------SLNSGSHFCGGSLINSQWVVSAAHC 41
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 281 FCGGSLISPNYVMTAAHC 298
FCGGSLI+ +V++AAHC
Sbjct: 24 FCGGSLINSQWVVSAAHC 41
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 44 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL 79
+HP Y DIAL+K+ PV FS+ + P CL
Sbjct: 13 IHPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCL 47
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 333 LHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACL 368
+HP Y DIAL+K+ PV FS+ + P CL
Sbjct: 13 IHPRYNWRENLD-RDIALMKLKKPVAFSDYIHPVCL 47
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 244 SPLVGTMVKAPLRTLLFISMAEVGFLEEGGTMKDVKWFCGGSLISPNYVMTA------AH 297
S L G R ++ EV F EE ++DVKW G+ I P+ + +A AH
Sbjct: 296 SALAGENDPEAKRKIIGRVFVEV-FDEEALKLEDVKWLAQGT-IYPDVIESAASATGKAH 353
Query: 298 CITSPL---GKPRYVRFGLITKLSYSVTDNIHRV 328
I S G P+ ++ GL+ L D + ++
Sbjct: 354 VIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKI 387
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 274 TMKDVKWFCGGSLISPNYVMTAAHC------ITSPLGKPRYVRFGLITKLSYSVTDNIHR 327
T + K FCGG +I N+V+T A C IT R + L+ K+++
Sbjct: 71 TNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKITH-------- 122
Query: 328 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPAC 367
+H + + + +D++LL++ P++ P C
Sbjct: 123 -----VHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVC 157
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 217 TMKDVKWFCGGSLISPNYVMTAAHC 241
T + K FCGG +I N+V+T A C
Sbjct: 71 TNSEGKDFCGGVIIRENFVLTTAKC 95
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 274 TMKDVKWFCGGSLISPNYVMTAAHC------ITSPLGKPRYVRFGLITKLSYSVTDNIHR 327
T + K FCGG +I N+V+T A C IT R + L+ K+++
Sbjct: 112 TNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKITH-------- 163
Query: 328 VMQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPAC 367
+H + + + +D++LL++ P++ P C
Sbjct: 164 -----VHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVC 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,941,818
Number of Sequences: 62578
Number of extensions: 666024
Number of successful extensions: 3036
Number of sequences better than 100.0: 356
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 980
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)