RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3170
(525 letters)
>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease. Many of these
are synthesised as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. A few, however, are active as single chain
molecules, and others are inactive due to substitutions
of the catalytic triad residues.
Length = 229
Score = 203 bits (518), Expect = 2e-62
Identities = 78/211 (36%), Positives = 112/211 (53%), Gaps = 11/211 (5%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
+ FCGGSLISP +V+TAAHC+ VR G LS + +V + I+HPNY
Sbjct: 25 RHFCGGSLISPRWVLTAAHCVRGSDPSNIRVRLG-SHDLSSGEEGQVIKVSKVIIHPNYN 83
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
+DIALLK+ PV S+ ++P CL + + T SG+G+ +
Sbjct: 84 PSTYD--NDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPD 141
Query: 397 RLMKVVLDIINNDTCSKQ---ETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
L +V + I++N TC + + + LCA + GGKD CQGDSGGPL + + +
Sbjct: 142 TLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGKDACQGDSGGPL---VCNDGRW 198
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
++GI S+G C P +YTRVS Y+ WI
Sbjct: 199 VLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229
Score = 67.7 bits (166), Expect = 7e-13
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ VR G LS + +V + I+HPNY +DIALLK+
Sbjct: 41 AAHCVRGSDPSNIRVRLG-SHDLSSGEEGQVIKVSKVIIHPNYNPSTYD--NDIALLKLK 97
Query: 66 PPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNY 100
PV S+ ++P CL + + T SG+G+ +
Sbjct: 98 EPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSE 134
>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are
synthesized as inactive precursor zymogens that are
cleaved during limited proteolysis to generate their
active forms. Alignment contains also inactive enzymes
that have substitutions of the catalytic triad residues.
Length = 232
Score = 203 bits (518), Expect = 3e-62
Identities = 80/211 (37%), Positives = 114/211 (54%), Gaps = 10/211 (4%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
+ FCGGSLISP +V+TAAHC+ S VR G S + +V + I+HPNY
Sbjct: 24 RHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHPNY- 82
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNYFDTKESL 396
++ +DIALLK+ PV S+ ++P CL + + T SG+G+ +
Sbjct: 83 -NPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPL-PD 140
Query: 397 RLMKVVLDIINNDTCSK---QETTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMY 453
L +V + I++N C + T+ + LCA + GGKD CQGDSGGPL + D
Sbjct: 141 VLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKDACQGDSGGPL--VCNDNGRG 198
Query: 454 NIIGITSYGRQCGHANTPAIYTRVSYYVPWI 484
++GI S+G C N P +YTRVS Y+ WI
Sbjct: 199 VLVGIVSWGSGCARPNYPGVYTRVSSYLDWI 229
Score = 67.3 bits (165), Expect = 1e-12
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+ S VR G S + +V + I+HPNY ++ +DIALLK+
Sbjct: 40 AAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHPNY--NPSTYDNDIALLKLK 97
Query: 66 PPVEFSETLKPACL--NRAHNVKSPTAIASGFGKLNY 100
PV S+ ++P CL + + T SG+G+ +
Sbjct: 98 RPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSE 134
>gnl|CDD|215708 pfam00089, Trypsin, Trypsin.
Length = 218
Score = 160 bits (407), Expect = 3e-46
Identities = 78/210 (37%), Positives = 110/210 (52%), Gaps = 19/210 (9%)
Query: 279 KWFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYT 338
K FCGGSLIS N+V+TAAHC+++ V G + + V + I+HPNY
Sbjct: 24 KHFCGGSLISENWVLTAAHCVSNAKSVR--VVLGAHNIVLREGGEQKFDVKKVIVHPNY- 80
Query: 339 TEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYFDTKESL 396
+DIALLK+ PV +T++P CL A + T SG+G ++L
Sbjct: 81 --NPDTDNDIALLKLKSPVTLGDTVRPICLPTASSDLPVGTTCTVSGWGNTKTLGLPDTL 138
Query: 397 RLMKVVLDIINNDTCSKQE-TTLISSQLCATVMAGGKDTCQGDSGGPLQTIMPDLCMYNI 455
+ +V + +++ +TC T+ + +CA AGGKD CQGDSGGPL +C
Sbjct: 139 Q--EVTVPVVSRETCRSAYGGTVTDNMICAG--AGGKDACQGDSGGPL------VCSDGE 188
Query: 456 -IGITSYGRQCGHANTPAIYTRVSYYVPWI 484
IGI S+G C N P +YT VS Y+ WI
Sbjct: 189 LIGIVSWGYGCASGNYPGVYTPVSSYLDWI 218
Score = 60.5 bits (147), Expect = 2e-10
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 7/54 (12%)
Query: 192 IIGGSRAKYGEFPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSP 245
I+GG A+ G FP Q + + K FCGGSLIS N+V+TAAHC+++
Sbjct: 1 IVGGDEAQPGSFPWQVSL-------QVSSGKHFCGGSLISENWVLTAAHCVSNA 47
Score = 50.9 bits (122), Expect = 3e-07
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 6 AAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGTSQYHDIALLKIA 65
AAHC+++ V G + + V + I+HPNY +DIALLK+
Sbjct: 40 AAHCVSNAKSVR--VVLGAHNIVLREGGEQKFDVKKVIVHPNY---NPDTDNDIALLKLK 94
Query: 66 PPVEFSETLKPACLNRAHNVKSP--TAIASGFGKLNYF 101
PV +T++P CL A + T SG+G
Sbjct: 95 SPVTLGDTVRPICLPTASSDLPVGTTCTVSGWGNTKTL 132
>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease
[Posttranslational modification, protein turnover,
chaperones].
Length = 413
Score = 86.1 bits (213), Expect = 4e-18
Identities = 53/226 (23%), Positives = 79/226 (34%), Gaps = 35/226 (15%)
Query: 281 FCGGSLISPNYVMTAAHCIT-SPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTT 339
FCGGS + YV+TAAHC S R ++ L+ S V +H Y+
Sbjct: 62 FCGGSKLGGRYVLTAAHCADASSPISSDVNR--VVVDLNDSSQAERGHVRTIYVHEFYSP 119
Query: 340 EGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYF-DTKESLRL 398
+ +DIA+L++A + + + + ++ + +
Sbjct: 120 G--NLGNDIAVLELARAA-------SLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTT 170
Query: 399 MKVVLDIINNDTCSKQET-TLISSQLCATVM----------------AG--GKDTCQGDS 439
V T + + CA AG KD CQGDS
Sbjct: 171 PSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRPPKDACQGDS 230
Query: 440 GGPLQTIMPDLCMYNIIGITSYG-RQCGHANTPAIYTRVSYYVPWI 484
GGP+ G+ S+G CG P +YT VS Y WI
Sbjct: 231 GGPI--FHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWI 274
>gnl|CDD|226119 COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid
transport and metabolism].
Length = 251
Score = 39.3 bits (92), Expect = 0.002
Identities = 32/166 (19%), Positives = 51/166 (30%), Gaps = 26/166 (15%)
Query: 282 CGGSLISPNYVMTAAHCITSP-LGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTE 340
+LI PN V+TA HCI SP G+ I ++ + E
Sbjct: 66 TAATLIGPNTVLTAGHCIYSPDYGEDDIAAAPPGVNSDGGPFYGITKIEIRVYPGELYKE 125
Query: 341 GTSQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIA-SGF--GKLNYFDTKESLR 397
+ +D+ + + + + N A K+ I G+ K N ES
Sbjct: 126 DGA-SYDVGEAALESGINIGDVVNYLKRNTASEAKANDRITVIGYPGDKPNIGTMWES-- 182
Query: 398 LMKVVLDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPL 443
++ I + DT G SG P+
Sbjct: 183 --TGKVNSIKGNKLFYD-----------------ADTLPGSSGSPV 209
Score = 36.6 bits (85), Expect = 0.020
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 203 FPHQAEVGFVEEGGTMKDVKWFCGGSLISPNYVMTAAHCITSPLVG 248
FP+ A V F G + +LI PN V+TA HCI SP G
Sbjct: 49 FPYSAVVQFEAATGRLC-----TAATLIGPNTVLTAGHCIYSPDYG 89
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family
includes trypsin like peptidase domains.
Length = 138
Score = 30.6 bits (69), Expect = 0.82
Identities = 24/161 (14%), Positives = 38/161 (23%), Gaps = 36/161 (22%)
Query: 284 GSLISPN-YVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNILHPNYTTEGT 342
G ++ + ++T AH + V
Sbjct: 3 GFVVGSDGLILTNAHVVEDADASEIEVVL---------PDGGRVPA---------EVVAA 44
Query: 343 SQYHDIALLKIAPPVEFSETLKPACLNRAHNVKSPTAIASGFGKLNYFDTKESLRLMKVV 402
D+ALLK+ P+ + L + G G L
Sbjct: 45 DPDLDLALLKVDGPLLPAAPLLASSAAPLGGSVVVVGGPGGIG----------LGASGGG 94
Query: 403 LDIINNDTCSKQETTLISSQLCATVMAGGKDTCQGDSGGPL 443
+ + S A DT G SGGP+
Sbjct: 95 GGVGGLVSGSLGGVDGRYILTDA-------DTSPGSSGGPV 128
>gnl|CDD|183455 PRK12342, PRK12342, hypothetical protein; Provisional.
Length = 254
Score = 30.1 bits (68), Expect = 2.3
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 31 SVTDNIH--RV--MQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV- 85
VT +I+ R+ M+ IL Q DI + AP E P R H +
Sbjct: 175 CVTSDINVPRIPSMKAILGAGKKPVTQWQASDIGWSQSAPLAELVGIRVPPQTERKHIIL 234
Query: 86 --KSPTAIASGFGKL 98
SP AIA L
Sbjct: 235 DNDSPEAIAELAEHL 249
Score = 30.1 bits (68), Expect = 2.3
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 320 SVTDNIH--RV--MQNILHPNYTTEGTSQYHDIALLKIAPPVEFSETLKPACLNRAHNV- 374
VT +I+ R+ M+ IL Q DI + AP E P R H +
Sbjct: 175 CVTSDINVPRIPSMKAILGAGKKPVTQWQASDIGWSQSAPLAELVGIRVPPQTERKHIIL 234
Query: 375 --KSPTAIASGFGKL 387
SP AIA L
Sbjct: 235 DNDSPEAIAELAEHL 249
>gnl|CDD|181900 PRK09487, sdhC, succinate dehydrogenase cytochrome b556 large
membrane subunit; Provisional.
Length = 129
Score = 28.2 bits (63), Expect = 4.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 280 WFCGGSLISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNI-HRVM 329
W G SL SP AA + S K ++ +G++T L+Y V I H +M
Sbjct: 46 WLLGTSLSSPEGFEQAAAIMDSFFVK--FIMWGILTALAYHVVVGIRHLLM 94
>gnl|CDD|221676 pfam12632, Vezatin, Mysoin-binding motif of peroxisomes. Vezatin
is a peroxisome transmembrane receptor that is involved
in membrane-membrane and cell-cell adhesions. In the
movement of peroxisomes it binds to class V and class
VIIa myosins to guide the organelle through the
microtubules and allow pathogens to internalise
themselves into host cells. Vezatin is crucial for
spermatozoan production. In mouse cells it interacts
with the cadherin-catenin complex bridging it to the
C-terminal FERM domain of myosin VIIA.
Length = 246
Score = 28.5 bits (64), Expect = 7.5
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 286 LISPNYVMTAAHCITSPLGKPRYVRFGLITKLSYSVTDNIHRVMQNI---LHPNYTTEGT 342
L+S Y + I+ + + R + K + ++ L P +
Sbjct: 83 LVSRGYRLAPLPPISRLEDQSQTRRCSRLRKALSRTLSLLFYNLKQAISKLLPLANGDNL 142
Query: 343 SQYHDI 348
+Y DI
Sbjct: 143 EKYCDI 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,103,929
Number of extensions: 2476220
Number of successful extensions: 1441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1422
Number of HSP's successfully gapped: 23
Length of query: 525
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 424
Effective length of database: 6,457,848
Effective search space: 2738127552
Effective search space used: 2738127552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)