Query psy3171
Match_columns 305
No_of_seqs 168 out of 1252
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:10:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1545|consensus 100.0 4E-35 8.7E-40 276.2 9.8 206 9-225 155-374 (507)
2 KOG3713|consensus 100.0 2.3E-32 5E-37 266.8 12.1 187 21-225 168-356 (477)
3 KOG2302|consensus 99.9 4.4E-26 9.5E-31 233.8 9.6 195 44-275 1440-1652(1956)
4 KOG4390|consensus 99.8 1.6E-22 3.4E-27 192.9 0.7 158 24-211 164-321 (632)
5 KOG2301|consensus 99.8 6.7E-19 1.5E-23 193.4 12.7 204 19-269 1138-1354(1592)
6 KOG2302|consensus 99.6 7.6E-16 1.7E-20 159.3 5.6 196 43-275 1122-1354(1956)
7 KOG1419|consensus 99.5 9.8E-15 2.1E-19 144.6 8.6 173 25-237 75-278 (654)
8 KOG2301|consensus 99.4 6E-13 1.3E-17 147.1 6.5 190 24-268 429-630 (1592)
9 PF00520 Ion_trans: Ion transp 99.0 8.5E-10 1.8E-14 94.6 5.9 93 99-211 1-94 (200)
10 PLN03192 Voltage-dependent pot 97.7 3.1E-05 6.7E-10 82.8 5.3 88 35-144 53-154 (823)
11 PLN03223 Polycystin cation cha 97.7 0.00015 3.3E-09 79.3 8.9 108 108-215 1189-1331(1634)
12 KOG1420|consensus 97.6 2.7E-05 5.8E-10 78.8 1.4 103 28-147 112-214 (1103)
13 PF08016 PKD_channel: Polycyst 96.3 0.011 2.4E-07 58.5 7.6 111 104-223 220-344 (425)
14 KOG3599|consensus 95.2 0.069 1.5E-06 57.3 8.3 105 101-215 472-593 (798)
15 KOG0498|consensus 93.9 0.098 2.1E-06 55.5 5.7 52 93-145 115-180 (727)
16 KOG0501|consensus 92.0 0.47 1E-05 49.1 7.1 53 94-147 248-313 (971)
17 KOG3713|consensus 88.0 2.2 4.8E-05 43.2 8.1 52 176-227 310-366 (477)
18 TIGR00870 trp transient-recept 87.2 3.4 7.3E-05 43.8 9.5 48 98-146 392-439 (743)
19 PF00520 Ion_trans: Ion transp 83.3 4.1 8.9E-05 34.2 6.6 27 93-119 29-55 (200)
20 KOG3614|consensus 81.1 5.7 0.00012 44.7 8.1 46 104-149 831-882 (1381)
21 KOG0500|consensus 78.9 1.9 4.2E-05 43.7 3.4 107 95-226 29-149 (536)
22 KOG3609|consensus 70.8 33 0.00071 37.1 10.1 105 108-217 397-511 (822)
23 KOG1545|consensus 64.6 5.8 0.00013 39.1 2.9 21 177-197 327-347 (507)
24 COG4766 EutQ Ethanolamine util 35.0 34 0.00074 29.8 2.6 37 268-304 53-90 (176)
25 PLN03192 Voltage-dependent pot 30.2 1E+02 0.0022 33.3 5.9 19 178-196 170-188 (823)
26 KOG0499|consensus 26.1 2.4E+02 0.0053 30.0 7.3 51 94-144 260-323 (815)
27 PHA00407 phage lambda Rz1-like 25.0 2.7E+02 0.0058 21.5 5.6 49 179-231 4-52 (84)
28 TIGR00870 trp transient-recept 23.5 3.8E+02 0.0081 28.5 8.6 17 100-116 426-442 (743)
29 PF03991 Prion_octapep: Copper 20.9 44 0.00095 14.9 0.4 6 276-281 3-8 (8)
No 1
>KOG1545|consensus
Probab=100.00 E-value=4e-35 Score=276.19 Aligned_cols=206 Identities=64% Similarity=1.058 Sum_probs=168.8
Q ss_pred cccCCCccccCCCCCChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccc-c--CCCcc
Q psy3171 9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTT-T--NGTKI 85 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~-~--~~~~~ 85 (305)
|||||+++++|.+.|+|..|+++|.++|.|+||..||...+.++++|++|++++|+||.|+++..+..+.. . .+...
T Consensus 155 redEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~ 234 (507)
T KOG1545|consen 155 REDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGV 234 (507)
T ss_pred HhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999998754222110 0 00000
Q ss_pred -cc--------CCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhc
Q psy3171 86 -EE--------DEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVL 156 (305)
Q Consensus 86 -~~--------~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~ 156 (305)
.+ .-.....+++.++|..|.+||++|+++|+++||+|..|+++.+|++|+++|+|+++.+..+.+...
T Consensus 235 ~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~--- 311 (507)
T KOG1545|consen 235 MNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQ--- 311 (507)
T ss_pred cCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh---
Confidence 00 001124678999999999999999999999999999999999999999999999999988765432
Q ss_pred cCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy3171 157 NLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHI--IPSSILFRGIFV 225 (305)
Q Consensus 157 ~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~--i~~~~LF~~~~i 225 (305)
+ ++.+..|+.+..+||++|+.|++||+||.||++|+++|++|+++|+.- ++.||||.+++.
T Consensus 312 -----g---~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviL 374 (507)
T KOG1545|consen 312 -----G---GGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVIL 374 (507)
T ss_pred -----c---CCccchhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 111235678899999999999999999999999999999999999854 444556666544
No 2
>KOG3713|consensus
Probab=99.98 E-value=2.3e-32 Score=266.79 Aligned_cols=187 Identities=38% Similarity=0.654 Sum_probs=148.9
Q ss_pred CCCChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccC-CCCCCCchhhh
Q psy3171 21 PLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEED-EVPDITDPFFL 99 (305)
Q Consensus 21 ~~~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 99 (305)
.....++|+++|+++|+|+||.+||+|.+.++++|++|++.+|++|+|++|.+...+. +...+.+ ...+.+..+.+
T Consensus 168 ~~~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~---~~~~~~~~~~~~~~p~l~~ 244 (477)
T KOG3713|consen 168 GGRCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGE---GLLVNVEKIESEPHPILTY 244 (477)
T ss_pred CCChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccc---cccccccccCCCCCCchHH
Confidence 3445679999999999999999999999999999999999999999999986532211 0011101 11234567899
Q ss_pred hcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCccc-ccccccch
Q psy3171 100 IETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKST-NQAMSLAI 178 (305)
Q Consensus 100 ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~ 178 (305)
+|.+|.+|||+||++|++.+|+|.+|+|++.|++|+++|+|+|+++.+.....+ +. .......+
T Consensus 245 vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~---------------~~~~l~~~~~v 309 (477)
T KOG3713|consen 245 VETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGE---------------SLKELENAGLV 309 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc---------------hHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999887532210 00 11123478
Q ss_pred hHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3171 179 LRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFV 225 (305)
Q Consensus 179 LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~i~~~~LF~~~~i 225 (305)
+|++|++||+||+||+||+.|+|+|+.|+++|...+.++++|++++|
T Consensus 310 vrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI 356 (477)
T KOG3713|consen 310 VRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGI 356 (477)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865555555554443
No 3
>KOG2302|consensus
Probab=99.93 E-value=4.4e-26 Score=233.79 Aligned_cols=195 Identities=19% Similarity=0.296 Sum_probs=169.1
Q ss_pred hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171 44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL 123 (305)
Q Consensus 44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~ 123 (305)
+.+.+.+++++|.+|++.+..|.+.+.+ ..++.+.|.|+.|+.+|..|.++|+++++ .+
T Consensus 1440 Shyld~fit~ii~LnvVtms~ehyqqp~--------------------sldealkycny~ft~vfV~EaV~klvafG-~r 1498 (1956)
T KOG2302|consen 1440 SHYLDQFITFIICLNVVTMSEEHYQQPT--------------------SLDEALKYCNYRFTAVFVLEAVLKLVAFG-ER 1498 (1956)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCcc--------------------cHHHHhhhcceeeeehhHHHHHHHHHHHh-HH
Confidence 5788999999999999999999876532 47789999999999999999999999997 68
Q ss_pred cccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHH
Q psy3171 124 NFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL 203 (305)
Q Consensus 124 ~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvL 203 (305)
+|++|.||.+|+.+|+.+.+++.++.++.++ .+|+ +++++|++|++||.|+|||.+.+.|+|.|
T Consensus 1499 rFfkdrwnqldlaivlls~mgitleeie~na--alpi--------------nptiirimrvlriarvlkllkmatgmral 1562 (1956)
T KOG2302|consen 1499 RFFKDRWNQLDLAIVLLSVMGITLEEIEINA--ALPI--------------NPTIIRIMRVLRIARVLKLLKMATGMRAL 1562 (1956)
T ss_pred HHHhhhhhhhhHHHHHHHHhcccHhheeecc--cCCC--------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888765432 2343 68999999999999999999999999999
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHhcccceee-----ee----eecccccce-eeeEEeeeccchhhhhhhh
Q psy3171 204 GRECQFIL--------HIIPSSILFRGIFVDRYYKETCII-----VL----RLSKAKVPI-VIFRYLLCNSRYSQVTRVL 265 (305)
Q Consensus 204 l~tl~~sl--------l~i~~~~LF~~~~i~~~~~~~~~~-----~l----~~~~~~~p~-~~~~~~~~~~~~~~~~~~~ 265 (305)
++|.++++ +++++||+|++.+++.|-+-.|.. |+ .+.++||++ +.||+.++|+|||+|+|+|
T Consensus 1563 ldtvvqalpqvgnlgllfmllffiyaalgvelfg~lec~e~npceglsrhatf~nfgmafltlfrvstgdnwngimkdtl 1642 (1956)
T KOG2302|consen 1563 LDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTL 1642 (1956)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccccCCCCCccccccccchhhhchHhhhheeeccCCcccchhhhhH
Confidence 99999874 688899999999998754445544 66 366699998 9999999999999999999
Q ss_pred hcccceeeec
Q psy3171 266 RAATHYQVDL 275 (305)
Q Consensus 266 ~~~~~~~~~~ 275 (305)
|+|+++.-=|
T Consensus 1643 rdc~~e~~cl 1652 (1956)
T KOG2302|consen 1643 RDCTHEESCL 1652 (1956)
T ss_pred hhcccchhhh
Confidence 9999876433
No 4
>KOG4390|consensus
Probab=99.84 E-value=1.6e-22 Score=192.87 Aligned_cols=158 Identities=36% Similarity=0.610 Sum_probs=128.5
Q ss_pred ChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcce
Q psy3171 24 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETL 103 (305)
Q Consensus 24 ~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~ 103 (305)
..++|+++|+-+|||+.|-.+-.|-+..-++|.+|+++-++||.|.-.. +|++++-.--..+...+..+|..
T Consensus 164 ~ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~--------~~~~~e~pCGEry~~aFFclDTA 235 (632)
T KOG4390|consen 164 GLSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGS--------PGRSKELPCGERYPVAFFCLDTA 235 (632)
T ss_pred cchHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCC--------CCCceecccccccceeeEEecce
Confidence 4789999999999999999999999999999999999999999986432 12222110001345578899999
Q ss_pred ehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHH
Q psy3171 104 CIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIR 183 (305)
Q Consensus 104 f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLR 183 (305)
|..+||.||+||++++|+|.+|.|+.+.++|.++|+|+|+++++.. |... ...+--||
T Consensus 236 CVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~---------------------N~DV-SGaFVTLR 293 (632)
T KOG4390|consen 236 CVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTD---------------------NEDV-SGAFVTLR 293 (632)
T ss_pred eEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecC---------------------Cccc-cceeEEEE
Confidence 9999999999999999999999999999999999999999887531 1111 12334578
Q ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHH
Q psy3171 184 LVRVFRIFKLSRHSKGLQILGRECQFIL 211 (305)
Q Consensus 184 llRIlRILKL~r~~~glrvLl~tl~~sl 211 (305)
++|++||+|..||+.|+|+|+.|++.-.
T Consensus 294 VFRVFRIFKFSRHSQGLRILGYTLKSCA 321 (632)
T KOG4390|consen 294 VFRVFRIFKFSRHSQGLRILGYTLKSCA 321 (632)
T ss_pred eeeeeeeeeecccccccchhhhhHHHHH
Confidence 8889999999999999999999999643
No 5
>KOG2301|consensus
Probab=99.78 E-value=6.7e-19 Score=193.44 Aligned_cols=204 Identities=21% Similarity=0.283 Sum_probs=162.9
Q ss_pred CCCCCChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhh
Q psy3171 19 EKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFF 98 (305)
Q Consensus 19 ~~~~~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (305)
+.|.|.++.|+++|+++. ++.|++.++.+|++|.+.++++++++.. .....+.
T Consensus 1138 ~ipr~~~~~q~~~~~~v~-------~~~F~~~i~~li~ln~i~l~~~~~~qs~--------------------~~~~~l~ 1190 (1592)
T KOG2301|consen 1138 PIPRPRNKLQGLVFDLVT-------SQAFDYLIMLLIFLNTIIMMVETYDQSD--------------------TYTAILT 1190 (1592)
T ss_pred CCCCCcchhhhHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHhhccchH--------------------HHHHHHH
Confidence 445556779999999998 5569999999999999999999987653 3456899
Q ss_pred hhcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccch
Q psy3171 99 LIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAI 178 (305)
Q Consensus 99 ~ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 178 (305)
+++.+|+++|++|+++|++|.+ ...||+++||++|+++++.+++..++..+..+ ...++..
T Consensus 1191 ~in~vft~~Ft~E~vLKiiA~~-~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~------------------~~~~~~~ 1251 (1592)
T KOG2301|consen 1191 ILNAVFIVLFTIECILKVIALR-FRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK------------------YESSPTL 1251 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhHhccccchheEeeeeeHhHHHHHHHHHHHh------------------hccchhh
Confidence 9999999999999999999985 58899999999999999999999887654321 1134678
Q ss_pred hHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHh--------cccceeeee--eecccccce
Q psy3171 179 LRVIRLVRVFRIFKLSRHSKGLQILGRECQFIL--HIIPSSILFRGIFVDRY--------YKETCIIVL--RLSKAKVPI 246 (305)
Q Consensus 179 LrvLRllRIlRILKL~r~~~glrvLl~tl~~sl--l~i~~~~LF~~~~i~~~--------~~~~~~~~l--~~~~~~~p~ 246 (305)
.+++|++|++|++|+++..+|+|.|+.|+++|+ +..+++++|+.++|||. ++.. .+.= .+...+-.+
T Consensus 1252 ~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~-~i~~~~NF~tf~~a~ 1330 (1592)
T KOG2301|consen 1252 LRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG-GINDHNNFRTFPNSM 1330 (1592)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc-ccCCCcccccchhhe
Confidence 999999999999999999999999999999998 55666677777777662 2222 1100 111133333
Q ss_pred -eeeEEeeeccchhhhhhhhhccc
Q psy3171 247 -VIFRYLLCNSRYSQVTRVLRAAT 269 (305)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
..||..++-.|+++|-|++++--
T Consensus 1331 i~LFr~~Tge~W~~im~~~l~s~p 1354 (1592)
T KOG2301|consen 1331 VVLFRCATGEGWNDIMDDCLNSKP 1354 (1592)
T ss_pred eeeeehhhhhhHHHHHHHHhcCCC
Confidence 69999999999999999988743
No 6
>KOG2302|consensus
Probab=99.59 E-value=7.6e-16 Score=159.29 Aligned_cols=196 Identities=18% Similarity=0.255 Sum_probs=140.9
Q ss_pred hhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhh-cceehhhhHHHHHHHHhhcC-
Q psy3171 43 AARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLI-ETLCIIWFTFELSVRFLACP- 120 (305)
Q Consensus 43 ~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i-e~~f~~iFtlE~iLRlia~~- 120 (305)
.++.|+.+++++|++|++.+++|+..+... +.+..+..+ |++|+++|.+|+.+|+++.+
T Consensus 1122 ~hk~Fd~vVl~~IfLNcVtialerp~i~~~-------------------s~EriFltlsnyIFtaIfV~Em~lKVVALGl 1182 (1956)
T KOG2302|consen 1122 QHKAFDTVVLFFIFLNCVTIALERPAIVEG-------------------STERIFLTLSNYIFTAIFVVEMTLKVVALGL 1182 (1956)
T ss_pred HHhhhhheehhhhhhhhHHHHhcccccccC-------------------cceEEEEEecchHHHHHHHHHHHHHHHhhhh
Confidence 357899999999999999999999543321 223445444 59999999999999999986
Q ss_pred --CcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccch
Q psy3171 121 --NKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSK 198 (305)
Q Consensus 121 --~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~ 198 (305)
....|+++.||++|.+.+..+.+++++..... .......++|+||++|.+|+||.+.+.+
T Consensus 1183 ~fge~aYl~ssWN~LDgflv~vsviDilvs~asa------------------~g~kILgVlrvLRlLRtlRpLRviSra~ 1244 (1956)
T KOG2302|consen 1183 YFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASA------------------GGAKILGVLRVLRLLRTLRPLRVISRAP 1244 (1956)
T ss_pred ccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------------------hhHHHHHHHHHHHHHHHhhHHHHHhhcc
Confidence 35789999999999999999999988754321 1123456889999999999999999999
Q ss_pred hhHHHHHHHHHHHH--HHH------HHHHHHHHHHHHhc----------------ccceeeee--------eecccccce
Q psy3171 199 GLQILGRECQFILH--IIP------SSILFRGIFVDRYY----------------KETCIIVL--------RLSKAKVPI 246 (305)
Q Consensus 199 glrvLl~tl~~sll--~i~------~~~LF~~~~i~~~~----------------~~~~~~~l--------~~~~~~~p~ 246 (305)
|++.+..|+..|+. -++ ++++|.++++..|= +-.|+-.- .+-+-|-++
T Consensus 1245 glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqal 1324 (1956)
T KOG2302|consen 1245 GLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQAL 1324 (1956)
T ss_pred cHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHH
Confidence 99999999999872 122 33344444443322 12243211 111133333
Q ss_pred -eeeEEeeeccchhhhhhhhhcccceeeec
Q psy3171 247 -VIFRYLLCNSRYSQVTRVLRAATHYQVDL 275 (305)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
+.|-.+.-|.|..+|.|-+.+-..+|.++
T Consensus 1325 mSLFvLaSkDgWv~ImyDgldavavdqqPI 1354 (1956)
T KOG2302|consen 1325 MSLFVLASKDGWVNIMYDGLDAVAVDQQPI 1354 (1956)
T ss_pred HHHHHHhcccchhhhhccchhhceeeeecc
Confidence 57777888999999999888766666554
No 7
>KOG1419|consensus
Probab=99.55 E-value=9.8e-15 Score=144.64 Aligned_cols=173 Identities=23% Similarity=0.408 Sum_probs=133.9
Q ss_pred hhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhccee
Q psy3171 25 HEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLC 104 (305)
Q Consensus 25 ~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f 104 (305)
.++|.++|+++|.|..-. +-.++++++++++.+++.-.+.|.+++.. .....+.++|++.
T Consensus 75 Rr~q~~vYN~LERPrGWk-af~YH~~VFllVl~CLILsV~STi~e~~~-------------------~a~~~L~~LEiv~ 134 (654)
T KOG1419|consen 75 RRIQNKVYNFLERPRGWK-AFLYHFFVFLLVLSCLILSVLSTIEEYEK-------------------LASGILYILEIVM 134 (654)
T ss_pred HHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHhcccHHHHH-------------------HHHHHHHHHHHHH
Confidence 466789999999886421 55678888888888888889999887643 2467899999999
Q ss_pred hhhhHHHHHHHHhhcCC---------cccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccc
Q psy3171 105 IIWFTFELSVRFLACPN---------KLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMS 175 (305)
Q Consensus 105 ~~iFtlE~iLRlia~~~---------r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 175 (305)
.++|.+||++|+|+++. |.+|.+.|+.++|+++++.+...+... . ++ + ...
T Consensus 135 IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g---~---------------qG-~-vfa 194 (654)
T KOG1419|consen 135 IVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG---S---------------QG-N-VFA 194 (654)
T ss_pred HHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEec---C---------------cc-c-eee
Confidence 99999999999999985 668999999999999988775544321 0 01 1 234
Q ss_pred cchhHHHHHHHHHHHhhhcccchhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---------------hcccce
Q psy3171 176 LAILRVIRLVRVFRIFKLSRHSKGLQILGRECQ-------FILHIIPSSILFRGIFVDR---------------YYKETC 233 (305)
Q Consensus 176 ~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~-------~sll~i~~~~LF~~~~i~~---------------~~~~~~ 233 (305)
.+.+|-+|.+.|+|.+|.-|....++.|+..+- +++.+-++.++|...++|. .|++..
T Consensus 195 tSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADAL 274 (654)
T KOG1419|consen 195 TSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADAL 274 (654)
T ss_pred hhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHH
Confidence 467999999999999999999977777765543 3456677777888887764 588888
Q ss_pred eeee
Q psy3171 234 IIVL 237 (305)
Q Consensus 234 ~~~l 237 (305)
|||.
T Consensus 275 WWG~ 278 (654)
T KOG1419|consen 275 WWGV 278 (654)
T ss_pred Hhhh
Confidence 8854
No 8
>KOG2301|consensus
Probab=99.36 E-value=6e-13 Score=147.08 Aligned_cols=190 Identities=22% Similarity=0.270 Sum_probs=139.4
Q ss_pred ChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcce
Q psy3171 24 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETL 103 (305)
Q Consensus 24 ~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~ 103 (305)
+.++|.++..++-+| .+...+.+++++|.+.+..+++++.+ ..+..+.+.|.+
T Consensus 429 ~~~~~~~~~~~v~~~-------~~~~~i~i~i~lnt~~~a~eh~~~~~--------------------~~~~~l~~~~~v 481 (1592)
T KOG2301|consen 429 WLKFKQWLRKMVFDP-------FVILFITICIALNTLFMAMEHYEMTK--------------------ARNYLLYLGNVV 481 (1592)
T ss_pred HHHHHHHHHHhhhcc-------eehhhhHHHHhhcccEEEEEEeCCcH--------------------HHHHHHHHHHHH
Confidence 456667777777644 47788899999999999999987653 246678999999
Q ss_pred ehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHH
Q psy3171 104 CIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIR 183 (305)
Q Consensus 104 f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLR 183 (305)
|+++|+.|+.+|+++.+ ...||+..||++|.++++...++.. ...+..+++||
T Consensus 482 F~~lF~~Em~~ki~al~-~~~yF~~~~n~fD~~iv~l~~~~~~--------------------------~~~~~g~svLr 534 (1592)
T KOG2301|consen 482 FTGLFTVEMILKIYALG-PRNYFRRGWNIFDLIIVLLSLLELL--------------------------LKNVYGLSVLR 534 (1592)
T ss_pred HHHHHHHHHHHHHHHcC-cHHHHhhhcchheEEEEehhhHHhc--------------------------ccchHHHHHHH
Confidence 99999999999999986 7899999999999998882222211 12345789999
Q ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHH--HHHHHHHHHHHHHHHH------h---cccceeeeeeecccccce-eeeEE
Q psy3171 184 LVRVFRIFKLSRHSKGLQILGRECQFIL--HIIPSSILFRGIFVDR------Y---YKETCIIVLRLSKAKVPI-VIFRY 251 (305)
Q Consensus 184 llRIlRILKL~r~~~glrvLl~tl~~sl--l~i~~~~LF~~~~i~~------~---~~~~~~~~l~~~~~~~p~-~~~~~ 251 (305)
.+|++||+|++|+++.++.|+..+.+|. +..+.+++|+.++|.+ | |+..|-+-.++..+--.+ +.|+
T Consensus 535 ~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq- 613 (1592)
T KOG2301|consen 535 SFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ- 613 (1592)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCCCCCccchhhCHHHHHHHHH-
Confidence 9999999999999999999999999886 3444455555555544 1 111122211111111122 4667
Q ss_pred eeeccchhhhhhhhhcc
Q psy3171 252 LLCNSRYSQVTRVLRAA 268 (305)
Q Consensus 252 ~~~~~~~~~~~~~~~~~ 268 (305)
.+|-+|+..|.|+..++
T Consensus 614 lt~e~W~evm~~~~~~~ 630 (1592)
T KOG2301|consen 614 ITCEEWTDVMWDCMEAA 630 (1592)
T ss_pred HcCCchHHHHHHHHHHh
Confidence 88999999999998887
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.97 E-value=8.5e-10 Score=94.60 Aligned_cols=93 Identities=27% Similarity=0.471 Sum_probs=72.3
Q ss_pred hhcceehhhhHHHHHHHHhhcCC-cccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccc
Q psy3171 99 LIETLCIIWFTFELSVRFLACPN-KLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLA 177 (305)
Q Consensus 99 ~ie~~f~~iFtlE~iLRlia~~~-r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 177 (305)
++|.++.++|++|.++|+++.+- +.+|++++||++|+++++|+++........ ......
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------~~~~~~ 60 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYG--------------------SASAQS 60 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS----------------------HHCH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccc--------------------cccccc
Confidence 57889999999999999999974 389999999999999999998776542110 000024
Q ss_pred hhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Q psy3171 178 ILRVIRLVRVFRIFKLSRHSKGLQILGRECQFIL 211 (305)
Q Consensus 178 ~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sl 211 (305)
.+++.|++|.+|++|+.|..+.++.+..++.++.
T Consensus 61 ~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~ 94 (200)
T PF00520_consen 61 LLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSF 94 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred eEEEEEeecccccccccccccccccccccccccc
Confidence 6788888888888888888888888887777654
No 10
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.75 E-value=3.1e-05 Score=82.80 Aligned_cols=88 Identities=13% Similarity=0.249 Sum_probs=60.3
Q ss_pred hccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHH
Q psy3171 35 FEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSV 114 (305)
Q Consensus 35 le~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iL 114 (305)
+-+|.++. -++.+.+++++++.+.+...++..-... .....+..+|.++.++|.+|+++
T Consensus 53 ii~P~~~~-~~~Wd~~~~~~~~y~~~~~p~~~~F~~~--------------------~~~~~~~~~d~i~~~~F~iDi~l 111 (823)
T PLN03192 53 IISPMDSR-YRWWETLMVVLVAYSAWVYPFEVAFLNA--------------------SPKRGLEIADNVVDLFFAVDIVL 111 (823)
T ss_pred EECCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHeeCC--------------------CCCCCeeeHHHHHHHHHHHHHHh
Confidence 33565443 4677888888888877775544321100 12234678899999999999999
Q ss_pred HHhhcC----------C----cccccccccceeeehhhhhHHHH
Q psy3171 115 RFLACP----------N----KLNFFRDVMNIIDIIAIIPYFIT 144 (305)
Q Consensus 115 Rlia~~----------~----r~~y~r~~~niiD~l~Vlp~~v~ 144 (305)
|+..+- + .++|++. |.++|+++++|+.+-
T Consensus 112 ~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i 154 (823)
T PLN03192 112 TFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQAL 154 (823)
T ss_pred heeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHH
Confidence 987761 1 3468765 679999999998653
No 11
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.66 E-value=0.00015 Score=79.30 Aligned_cols=108 Identities=13% Similarity=0.106 Sum_probs=60.8
Q ss_pred hHHHHHHHHhhc----CCcccccccccceeeehhhhhHHHHHHHHhhhh---hhhc---------cCCC-CCC---CCC-
Q psy3171 108 FTFELSVRFLAC----PNKLNFFRDVMNIIDIIAIIPYFITLATVVAEE---EDVL---------NLPK-APV---SPQ- 166 (305)
Q Consensus 108 FtlE~iLRlia~----~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~---~~~~---------~~p~-~~~---~~~- 166 (305)
|+.+=+.++... ++++.||+++||++|++.++.++..+++..... ...+ .... +.. +..
T Consensus 1189 fIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls~sa~fl~Lq~p 1268 (1634)
T PLN03223 1189 SVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLSASANFTALRIP 1268 (1634)
T ss_pred HHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhhhcchhhhccc
Confidence 444444455432 345799999999999999998888776532100 0000 0000 000 000
Q ss_pred Ccccc--c-ccc-----------cchhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHH
Q psy3171 167 DKSTN--Q-AMS-----------LAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIP 215 (305)
Q Consensus 167 ~~~~~--~-~~~-----------~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~i~ 215 (305)
++... . ..+ ..+.-++-+++++|++|++|..|.++.|..|++.+..-+.
T Consensus 1269 g~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa 1331 (1634)
T PLN03223 1269 NELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLM 1331 (1634)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence 00000 0 000 0122234567889999999999999999999998874333
No 12
>KOG1420|consensus
Probab=97.56 E-value=2.7e-05 Score=78.80 Aligned_cols=103 Identities=18% Similarity=0.316 Sum_probs=74.3
Q ss_pred HHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhh
Q psy3171 28 QRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIW 107 (305)
Q Consensus 28 r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~i 107 (305)
|.|.-.++. ..+..+|+.-+.++++.+-+.++.+++...+.-+ .++ +...+.-..+|..|.++
T Consensus 112 kdwagelis--gqtltgr~lvvlvfilsigsliiyf~das~~~ve-~cq--------------~w~~~~tqqidlafnif 174 (1103)
T KOG1420|consen 112 KDWAGELIS--GQTLTGRVLVVLVFILSIGSLIIYFIDASNPIVE-TCQ--------------NWYKDFTQQIDLAFNIF 174 (1103)
T ss_pred hhhhcceee--cccccceeeehhHHHHhhhceEEEEEcCCChHHH-hhh--------------hhhhChHHHhhhHhhHH
Confidence 444445554 3345577777766666666666666665432111 011 13455668999999999
Q ss_pred hHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHH
Q psy3171 108 FTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLAT 147 (305)
Q Consensus 108 FtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l 147 (305)
|.+-+.+|++++.+|.-|+...+.++|+..+.|+++.+.+
T Consensus 175 flvyffirfiaasdklwf~lemys~vdfftippsfvsiyl 214 (1103)
T KOG1420|consen 175 FLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYL 214 (1103)
T ss_pred HHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEe
Confidence 9999999999999999999999999999999999986543
No 13
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=96.33 E-value=0.011 Score=58.46 Aligned_cols=111 Identities=13% Similarity=0.238 Sum_probs=64.9
Q ss_pred ehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhh---hhhccCCCCCCCCCCccccccccc----
Q psy3171 104 CIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEE---EDVLNLPKAPVSPQDKSTNQAMSL---- 176 (305)
Q Consensus 104 f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~---- 176 (305)
+.++|+..-+.++...+ +.|++++||++|+++++.++..+++..... ++.+. . ..+ ..+...+.
T Consensus 220 ~~l~~~~~ei~~i~~~g--~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~----~-~~~--~~~~fv~f~~~a 290 (425)
T PF08016_consen 220 FVLYFLYREIKKIRREG--RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALK----Q-YRE--NPRSFVDFQELA 290 (425)
T ss_pred HHHHHHHHHHHHHHHhh--hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-hhc--cccccCCHHHHH
Confidence 44556666666666553 889999999999999887776665432110 00000 0 000 00000011
Q ss_pred -------chhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3171 177 -------AILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGI 223 (305)
Q Consensus 177 -------~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~i~~~~LF~~~ 223 (305)
.+.-++=.+-.+|++|+.|..+.++.+..|++.+..-+..+++..++
T Consensus 291 ~~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i 344 (425)
T PF08016_consen 291 QWDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLI 344 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222334557888899999999999999999987544444443333
No 14
>KOG3599|consensus
Probab=95.19 E-value=0.069 Score=57.26 Aligned_cols=105 Identities=11% Similarity=0.201 Sum_probs=66.9
Q ss_pred cceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhh------hhhccCCCCCCCCCCccccccc
Q psy3171 101 ETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEE------EDVLNLPKAPVSPQDKSTNQAM 174 (305)
Q Consensus 101 e~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~------~~~~~~p~~~~~~~~~~~~~~~ 174 (305)
=+++.+.|+++-++++.-.+ .++|++++||++|+.++.-+++.+++..... .....+. ..+...
T Consensus 472 f~l~~~yf~~~e~~~i~~~~-~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~---------~~~~f~ 541 (798)
T KOG3599|consen 472 FLLFVLYFAVAEGLKIWIHR-LGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERA---------SPRTFI 541 (798)
T ss_pred HHHHHHHHHHHHHHHHHHhh-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCcccc
Confidence 34456678888888888653 4699999999999999998887766542211 0000000 000011
Q ss_pred ccc-------hhHH----HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHH
Q psy3171 175 SLA-------ILRV----IRLVRVFRIFKLSRHSKGLQILGRECQFILHIIP 215 (305)
Q Consensus 175 ~~~-------~Lrv----LRllRIlRILKL~r~~~glrvLl~tl~~sll~i~ 215 (305)
++. ..+. +=.+-.+|++|++|+.+.++.+..|+..++.-+.
T Consensus 542 ~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~ 593 (798)
T KOG3599|consen 542 DFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIV 593 (798)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 111 1112 2335578899999999999999999999875444
No 15
>KOG0498|consensus
Probab=93.87 E-value=0.098 Score=55.47 Aligned_cols=52 Identities=19% Similarity=0.554 Sum_probs=40.8
Q ss_pred CCchhhhhcceehhhhHHHHHHHHhhc---CC-----------cccccccccceeeehhhhhHHHHH
Q psy3171 93 ITDPFFLIETLCIIWFTFELSVRFLAC---PN-----------KLNFFRDVMNIIDIIAIIPYFITL 145 (305)
Q Consensus 93 ~~~~l~~ie~~f~~iFtlE~iLRlia~---~~-----------r~~y~r~~~niiD~l~Vlp~~v~l 145 (305)
...++..+|.+.-++|.+.+++++..+ ++ .++|++ .|-++|+++++|+-.-+
T Consensus 115 ~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~~~i~ 180 (727)
T KOG0498|consen 115 LAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPFDQIV 180 (727)
T ss_pred ccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcChhhhe
Confidence 445678899999999999999998664 21 247898 58899999999986543
No 16
>KOG0501|consensus
Probab=91.97 E-value=0.47 Score=49.10 Aligned_cols=53 Identities=19% Similarity=0.525 Sum_probs=40.4
Q ss_pred CchhhhhcceehhhhHHHHHHHHhhc---CC----------cccccccccceeeehhhhhHHHHHHH
Q psy3171 94 TDPFFLIETLCIIWFTFELSVRFLAC---PN----------KLNFFRDVMNIIDIIAIIPYFITLAT 147 (305)
Q Consensus 94 ~~~l~~ie~~f~~iFtlE~iLRlia~---~~----------r~~y~r~~~niiD~l~Vlp~~v~l~l 147 (305)
...+..+|.+.-++|.++++|.+-.. |. |..|+|+ |-++|+++-+|+=+--++
T Consensus 248 ~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF 313 (971)
T KOG0501|consen 248 NVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAF 313 (971)
T ss_pred ceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHh
Confidence 44567888889999999999986432 11 6689987 679999999998765444
No 17
>KOG3713|consensus
Probab=88.02 E-value=2.2 Score=43.18 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=39.3
Q ss_pred cchhHHHHHHHHHHHhhhcccchhh-HHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy3171 176 LAILRVIRLVRVFRIFKLSRHSKGL-QILGRECQFI----LHIIPSSILFRGIFVDR 227 (305)
Q Consensus 176 ~~~LrvLRllRIlRILKL~r~~~gl-rvLl~tl~~s----ll~i~~~~LF~~~~i~~ 227 (305)
.+++|++|++||+++-|.....+.+ .+|=++.+.. +.+..++++|..+++++
T Consensus 310 vrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~ 366 (477)
T KOG3713|consen 310 VRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFA 366 (477)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999888776 4455555543 24566778888888865
No 18
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=87.20 E-value=3.4 Score=43.83 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=30.8
Q ss_pred hhhcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHH
Q psy3171 98 FLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLA 146 (305)
Q Consensus 98 ~~ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~ 146 (305)
.++.......|..+-...++..+ ...|+++.||++|++.+..++..++
T Consensus 392 e~~~~~~~~~~~~~e~~~~~~~g-~~~y~~~~wn~~d~~~~~~~~~~~~ 439 (743)
T TIGR00870 392 EMLIVTWVDGLRLGEEKLIWLGG-IFEYIHQLWNILDFGMNSFYLATFL 439 (743)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455566555566553 5689999999999977665555443
No 19
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=83.34 E-value=4.1 Score=34.20 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=18.3
Q ss_pred CCchhhhhcceehhhhHHHHHHHHhhc
Q psy3171 93 ITDPFFLIETLCIIWFTFELSVRFLAC 119 (305)
Q Consensus 93 ~~~~l~~ie~~f~~iFtlE~iLRlia~ 119 (305)
..+++.++|.+......++++++....
T Consensus 29 ~~~~~~~~d~~~~~~~~~~~~~~~~~~ 55 (200)
T PF00520_consen 29 FRSWWNWFDFISVIPSIVSVILRSYGS 55 (200)
T ss_dssp CCSHHHHHHHHHHHHHCCHHCCHCSS-
T ss_pred hcChhhccccccccccccccccccccc
Confidence 455777888887777777777665443
No 20
>KOG3614|consensus
Probab=81.12 E-value=5.7 Score=44.74 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=32.0
Q ss_pred ehhhhHHHHHHHHhhcCC------cccccccccceeeehhhhhHHHHHHHHh
Q psy3171 104 CIIWFTFELSVRFLACPN------KLNFFRDVMNIIDIIAIIPYFITLATVV 149 (305)
Q Consensus 104 f~~iFtlE~iLRlia~~~------r~~y~r~~~niiD~l~Vlp~~v~l~l~~ 149 (305)
-..-+++|-+=+++...+ -.-||.+.||++|.+++.-+.++.++..
T Consensus 831 ~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl 882 (1381)
T KOG3614|consen 831 WIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRL 882 (1381)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEe
Confidence 334455666544444322 1249999999999999999999988754
No 21
>KOG0500|consensus
Probab=78.87 E-value=1.9 Score=43.71 Aligned_cols=107 Identities=15% Similarity=0.256 Sum_probs=68.5
Q ss_pred chhhhhcceehhhhHHHHHHHHhhc----C--------CcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCC
Q psy3171 95 DPFFLIETLCIIWFTFELSVRFLAC----P--------NKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAP 162 (305)
Q Consensus 95 ~~l~~ie~~f~~iFtlE~iLRlia~----~--------~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~ 162 (305)
..+..+|+.+=++|.++.++|.-.- | -+.+|+.+..-.+|.++++|.=...+. .
T Consensus 29 ~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~--~------------ 94 (536)
T KOG0500|consen 29 ENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFK--D------------ 94 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhc--C------------
Confidence 3467899999999999999986441 1 156899999999999999997443321 0
Q ss_pred CCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q psy3171 163 VSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILF--RGIFVD 226 (305)
Q Consensus 163 ~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~i~~~~LF--~~~~i~ 226 (305)
..-...|..|++|+-|+....-...+--.--++++-+.++..+++|| -+|+++
T Consensus 95 -----------~~~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf 149 (536)
T KOG0500|consen 95 -----------GSASLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYF 149 (536)
T ss_pred -----------CcchHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHH
Confidence 11234566777777777666655444444455555555444444443 455554
No 22
>KOG3609|consensus
Probab=70.78 E-value=33 Score=37.14 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=56.7
Q ss_pred hHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhh-hhhhccCCCCCCCCCCcccccccccc--------h
Q psy3171 108 FTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAE-EEDVLNLPKAPVSPQDKSTNQAMSLA--------I 178 (305)
Q Consensus 108 FtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~--------~ 178 (305)
+..|=+-.+|..| +..|+++.||++|++.+.-+...+++.... .+.....| .-++. -......+. +
T Consensus 397 ~iw~E~k~lw~~G-~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~--~~~~R--~~W~~~dp~ll~E~lfAi 471 (822)
T KOG3609|consen 397 LIWEEIKELWRVG-RDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDP--SSVDR--MHWPSFDPSLLAEGLFAI 471 (822)
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--cccch--hhCCCCcHHHHHHHHHHH
Confidence 3444455677665 789999999999999988877776654211 00000000 00000 001111222 2
Q ss_pred hHHHHHHHHHHHhhhcccchhhHH-HHHHHHHHHHHHHHH
Q psy3171 179 LRVIRLVRVFRIFKLSRHSKGLQI-LGRECQFILHIIPSS 217 (305)
Q Consensus 179 LrvLRllRIlRILKL~r~~~glrv-Ll~tl~~sll~i~~~ 217 (305)
--++-.+|++-++-.-.+...+++ |++.+.....++..+
T Consensus 472 A~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~ 511 (822)
T KOG3609|consen 472 ANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIF 511 (822)
T ss_pred HHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHH
Confidence 244555666666666666666765 566666655444333
No 23
>KOG1545|consensus
Probab=64.64 E-value=5.8 Score=39.15 Aligned_cols=21 Identities=24% Similarity=0.654 Sum_probs=9.7
Q ss_pred chhHHHHHHHHHHHhhhcccc
Q psy3171 177 AILRVIRLVRVFRIFKLSRHS 197 (305)
Q Consensus 177 ~~LrvLRllRIlRILKL~r~~ 197 (305)
+++|..|++||+++-|..+..
T Consensus 327 RViRLVRVFRIFKLSRHSkGL 347 (507)
T KOG1545|consen 327 RVIRLVRVFRIFKLSRHSKGL 347 (507)
T ss_pred HHHHHHHHhhheeeccccchH
Confidence 444444444444444444443
No 24
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=34.99 E-value=34 Score=29.82 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=23.4
Q ss_pred ccceeeecCCCcceeeeecCCcc-eeeccCCceeeecc
Q psy3171 268 ATHYQVDLRGTPDQVDLTGTPDQ-VDLVGTPDQVYLTN 304 (305)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 304 (305)
+++-.+|=+|--+.||+..---- .-=+|.||+||+||
T Consensus 53 ~~~k~v~~ksgikvvk~s~vk~~~r~d~gqp~~V~~td 90 (176)
T COG4766 53 PSFKSVDGKSGIKVVKLSSVKFGLRFDTGQPDCVYTTD 90 (176)
T ss_pred cceeecccCCceeEEecccceeEeeecCCCCCeEEeec
Confidence 44555666666666666554433 33368888888886
No 25
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=30.19 E-value=1e+02 Score=33.34 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHhhhccc
Q psy3171 178 ILRVIRLVRVFRIFKLSRH 196 (305)
Q Consensus 178 ~LrvLRllRIlRILKL~r~ 196 (305)
++|++|++|+.|+.++.+.
T Consensus 170 ~l~llrl~Rl~ri~~~~~~ 188 (823)
T PLN03192 170 LLGLLRFWRLRRVKQLFTR 188 (823)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
No 26
>KOG0499|consensus
Probab=26.09 E-value=2.4e+02 Score=29.98 Aligned_cols=51 Identities=14% Similarity=0.425 Sum_probs=34.2
Q ss_pred CchhhhhcceehhhhHHHHHH---H--HhhcCC--------cccccccccceeeehhhhhHHHH
Q psy3171 94 TDPFFLIETLCIIWFTFELSV---R--FLACPN--------KLNFFRDVMNIIDIIAIIPYFIT 144 (305)
Q Consensus 94 ~~~l~~ie~~f~~iFtlE~iL---R--lia~~~--------r~~y~r~~~niiD~l~Vlp~~v~ 144 (305)
.+.+.++|+.|-+++.+++++ | +.--|. +.+|.++.---+|+++++|.=+-
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldll 323 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLL 323 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHH
Confidence 456788999999999998864 1 110110 44566666667899999997543
No 27
>PHA00407 phage lambda Rz1-like protein
Probab=24.95 E-value=2.7e+02 Score=21.49 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy3171 179 LRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKE 231 (305)
Q Consensus 179 LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll~i~~~~LF~~~~i~~~~~~ 231 (305)
+|.+|.-|++|. |..++--+.+.=++-.++++ ++.++--...|++|..|
T Consensus 4 lR~lr~~r~lr~-~s~~y~~stkktl~rwkaaL---IGlllicv~tISGCaSe 52 (84)
T PHA00407 4 LRKLRLRRILRL-RSMKYRLSTKKTLRRWKAAL---IGLLLICVATISGCASE 52 (84)
T ss_pred HHHHHHHHHHHH-HhhcCcchhhhhhHHHHHHH---HHHHHHHHHHHhhhhhc
Confidence 556666666653 44555555555444444333 33333333445554444
No 28
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=23.51 E-value=3.8e+02 Score=28.47 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=6.4
Q ss_pred hcceehhhhHHHHHHHH
Q psy3171 100 IETLCIIWFTFELSVRF 116 (305)
Q Consensus 100 ie~~f~~iFtlE~iLRl 116 (305)
+|.+...+|..=+++|+
T Consensus 426 ~d~~~~~~~~~~~~~~~ 442 (743)
T TIGR00870 426 LDFGMNSFYLATFLDRP 442 (743)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33333333333333443
No 29
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=20.87 E-value=44 Score=14.86 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=4.0
Q ss_pred CCCcce
Q psy3171 276 RGTPDQ 281 (305)
Q Consensus 276 ~~~~~~ 281 (305)
+|.|+|
T Consensus 3 gG~Wgq 8 (8)
T PF03991_consen 3 GGGWGQ 8 (8)
T ss_pred CCcCCC
Confidence 577775
Done!