Query psy3171
Match_columns 305
No_of_seqs 168 out of 1252
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:11:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r9r_B Paddle chimera voltage 99.9 2.7E-27 9.3E-32 237.0 10.2 188 9-212 146-341 (514)
2 1ors_C Potassium channel; volt 99.9 2.5E-23 8.6E-28 173.3 4.8 124 44-213 5-128 (132)
3 4dxw_A Navrh, ION transport pr 99.8 5.6E-23 1.9E-27 184.4 -4.0 174 44-267 11-192 (229)
4 3rvy_A ION transport protein; 99.8 4.2E-21 1.4E-25 177.4 4.8 130 24-211 16-145 (285)
5 2kyh_A KVAP, voltage-gated pot 99.8 2.1E-19 7.2E-24 152.5 4.0 136 23-211 6-141 (147)
6 1orq_C Potassium channel; volt 99.6 1.8E-16 6.2E-21 141.2 7.4 124 44-210 7-131 (223)
7 3beh_A MLL3241 protein; transm 99.6 1.6E-16 5.4E-21 150.6 -0.6 119 44-211 7-126 (355)
8 2a9h_A Voltage-gated potassium 95.5 0.01 3.5E-07 49.9 3.9 23 178-201 26-48 (155)
9 2lcm_A Voltage-dependent N-typ 95.2 0.0064 2.2E-07 36.9 1.2 25 177-201 4-28 (28)
10 2ih3_C Voltage-gated potassium 93.9 0.041 1.4E-06 44.2 3.5 18 178-196 3-20 (122)
11 1qg9_A Protein (sodium channel 88.9 0.19 6.5E-06 29.8 1.7 21 100-120 2-22 (26)
12 1orq_C Potassium channel; volt 86.6 1.2 4.2E-05 38.3 6.4 32 181-212 98-129 (223)
13 4dxw_A Navrh, ION transport pr 84.0 0.98 3.4E-05 39.2 4.4 31 179-209 101-132 (229)
14 3rvy_A ION transport protein; 82.0 1.1 3.9E-05 40.1 4.2 32 178-209 115-147 (285)
15 2r9r_B Paddle chimera voltage 72.5 1.7 5.7E-05 43.0 2.5 25 126-150 237-261 (514)
16 2a9h_A Voltage-gated potassium 71.9 1.8 6E-05 36.0 2.2 23 175-197 17-39 (155)
17 2kyh_A KVAP, voltage-gated pot 71.4 1.6 5.6E-05 36.0 1.9 21 129-149 53-73 (147)
18 3beh_A MLL3241 protein; transm 69.3 3.7 0.00013 37.8 4.0 10 95-104 72-81 (355)
19 1ors_C Potassium channel; volt 68.9 3 0.0001 33.4 2.9 19 130-148 39-57 (132)
20 2ih3_C Voltage-gated potassium 52.3 8.7 0.0003 30.2 2.8 13 185-197 4-16 (122)
No 1
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.94 E-value=2.7e-27 Score=237.04 Aligned_cols=188 Identities=56% Similarity=0.987 Sum_probs=147.4
Q ss_pred cccCCCccccCCCCCChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccc-------cC
Q psy3171 9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTT-------TN 81 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~-------~~ 81 (305)
+|+|+..++++.+.|++++|+++|.++++|.+|..|++|+++++++|++|+++++++|.|+.+.......+ .+
T Consensus 146 ~~~e~~~~~~~~~~p~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~ 225 (514)
T 2r9r_B 146 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYS 225 (514)
T ss_dssp HHHTTCCCCCCCCCCSCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHH
T ss_pred hhhhhccccccccCchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 45677877788889999999999999999999999999999999999999999999999875431000000 00
Q ss_pred CCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCC
Q psy3171 82 GTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKA 161 (305)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~ 161 (305)
+.....+.......++.++|.+|+++|++|+++|++++++|++|++++||++|+++++|+++.++......
T Consensus 226 ~~~~~~~~~~~~~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~--------- 296 (514)
T 2r9r_B 226 QSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNK--------- 296 (514)
T ss_dssp HHHHSSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSC---------
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHhchhHHHHHHHHHHHHHHHHhhhccc---------
Confidence 00000011123567889999999999999999999999999999999999999999999999887532110
Q ss_pred CCCCCCccccc-ccccchhHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q psy3171 162 PVSPQDKSTNQ-AMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILH 212 (305)
Q Consensus 162 ~~~~~~~~~~~-~~~~~~LrvLRllRIlRILKL~r~~~glrvLl~tl~~sll 212 (305)
+.+. ......+|++|++|++|++|+.|++++++.+..++++++.
T Consensus 297 -------~~~~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~ 341 (514)
T 2r9r_B 297 -------SVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMR 341 (514)
T ss_dssp -------SHHHHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHH
T ss_pred -------cchhhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 0000 0114679999999999999999999999999999998763
No 2
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.87 E-value=2.5e-23 Score=173.28 Aligned_cols=124 Identities=15% Similarity=0.200 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171 44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL 123 (305)
Q Consensus 44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~ 123 (305)
++.|+..++++|++|++.+++||.++.+. +.++.+.++|++|+++|++||++|++++++|+
T Consensus 5 ~~~f~~~i~~lIlls~~~~~~et~~~~~~-------------------~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~ 65 (132)
T 1ors_C 5 HPLVELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPA 65 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSCCCS-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhhhH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 67899999999999999999999876532 23456889999999999999999999999999
Q ss_pred cccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHH
Q psy3171 124 NFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL 203 (305)
Q Consensus 124 ~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvL 203 (305)
+|++ ||++|+++++|+++++... ...+.+|++|++|++|++|+.|+++|++.+
T Consensus 66 ~y~~--~niiDllailp~~~~~~~~-------------------------~~l~~lr~lRllRv~Rvlkl~r~~~~l~~l 118 (132)
T 1ors_C 66 GYVK--KTLYEIPALVPAGLLALIE-------------------------GHLAGLGLFRLVRLLRFLRILLIISRGSKF 118 (132)
T ss_dssp TTTT--TCGGGTGGGSCHHHHHHHH-------------------------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHhc-------------------------chHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999 9999999999999887641 024678999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy3171 204 GRECQFILHI 213 (305)
Q Consensus 204 l~tl~~sll~ 213 (305)
+.++++|...
T Consensus 119 ~~~l~~s~~~ 128 (132)
T 1ors_C 119 LSAIADAADK 128 (132)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 3
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.83 E-value=5.6e-23 Score=184.38 Aligned_cols=174 Identities=20% Similarity=0.304 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171 44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL 123 (305)
Q Consensus 44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~ 123 (305)
+++|+..+.++|++|++.+++|+++..+ +.++.+.++|.+|+++|++|+++|++++|+++
T Consensus 11 ~~~f~~~i~~~I~ln~i~l~~~~~~~~~--------------------~~~~~l~~~e~~~~~iF~~E~~lri~~~~~~~ 70 (229)
T 4dxw_A 11 NRIFQFTVVSIIILNAVLIGATTYELDP--------------------LFLETIHLLDYGITIFFVIEILIRFIGEKQKA 70 (229)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTCCSSSCH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CchHHHHHHHHHHHHHHHHHHccCCCCh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchh
Confidence 6789999999999999999999976422 24567899999999999999999999998889
Q ss_pred cccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHHH
Q psy3171 124 NFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL 203 (305)
Q Consensus 124 ~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrvL 203 (305)
+|++++||++|++++++++++.. ....++++|++|++|++|+.|+++++|.+
T Consensus 71 ~y~~~~wni~D~~~v~~~~i~~~----------------------------~~~~~~~lr~~RilR~lrl~~~~~~l~~l 122 (229)
T 4dxw_A 71 DFFKSGWNIFDTVIVAISLIPIP----------------------------NNSSFLVLRLLRIFRVLRLISVIPELKQI 122 (229)
T ss_dssp ----CHHHHHHHHHHHHTTCC------------------------------------CCTTHHHHHHTTHHHHCHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHhhcC----------------------------ccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999988765331 11346778899999999999999999999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHH-----hcccceeeeeeecccccce-eeeEEeeeccchhhhhhhhhc
Q psy3171 204 GRECQFILHII--PSSILFRGIFVDR-----YYKETCIIVLRLSKAKVPI-VIFRYLLCNSRYSQVTRVLRA 267 (305)
Q Consensus 204 l~tl~~sll~i--~~~~LF~~~~i~~-----~~~~~~~~~l~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~ 267 (305)
..++.++...+ .+++++..+++++ .+++.--. .....+-.+ +.|+++++++|...|.|+.++
T Consensus 123 ~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~--~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~ 192 (229)
T 4dxw_A 123 IEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPS--RWGDLGISLITLFQVLTLSSWETVMLPMQEI 192 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCT--TTSSHHHHHHHHHHHHTTSSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--cccCHHHHHHHHHHHHccCCHHHHHHHHHHh
Confidence 99999987432 2223333333322 22221100 122222233 688999999999999987764
No 4
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.82 E-value=4.2e-21 Score=177.44 Aligned_cols=130 Identities=18% Similarity=0.336 Sum_probs=111.3
Q ss_pred ChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcce
Q psy3171 24 SHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETL 103 (305)
Q Consensus 24 ~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~ 103 (305)
++.+|+++|.+++ +++|+.++.++|++|++.+++++.++... +....+.++|.+
T Consensus 16 ~~~~r~~~~~i~~-------~~~f~~~i~~li~l~~i~~~~~~~~~~~~-------------------~~~~~l~~~e~~ 69 (285)
T 3rvy_A 16 GSHMYLRITNIVE-------SSFFTKFIIYLIVLNGITMGLETSKTFMQ-------------------SFGVYTTLFNQI 69 (285)
T ss_dssp ---CHHHHHHHHT-------SHHHHHHHHHHHHHHHHHHHHTTCTTHHH-------------------HSHHHHHHHHHH
T ss_pred chHHHHHHHHHHc-------CHHHHHHHHHHHHHHHHHHHHhcCcccch-------------------HHHHHHHHHHHH
Confidence 3458999999998 56899999999999999999999874331 245678999999
Q ss_pred ehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHH
Q psy3171 104 CIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIR 183 (305)
Q Consensus 104 f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLR 183 (305)
|+++|++|+++|++++| ++|++++||++|+++++|++++. ...++++|
T Consensus 70 ~~~iF~~E~~lrl~~~~--~~y~~~~wn~~Dl~~v~~~~i~~------------------------------~~~~~~lr 117 (285)
T 3rvy_A 70 VITIFTIEIILRIYVHR--ISFFKDPWSLFDFFVVAISLVPT------------------------------SSGFEILR 117 (285)
T ss_dssp HHHHHHHHHHHHHHTTG--GGGGGCHHHHHHHHHHHHHHSCS------------------------------SSSCTHHH
T ss_pred HHHHHHHHHHHHHHHHh--HHHHcCChHHhHHHHHHHHHHcc------------------------------cchHHHHH
Confidence 99999999999999997 78999999999999999887521 11367899
Q ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHH
Q psy3171 184 LVRVFRIFKLSRHSKGLQILGRECQFIL 211 (305)
Q Consensus 184 llRIlRILKL~r~~~glrvLl~tl~~sl 211 (305)
++|++|++|+.|+++++|.+..++..+.
T Consensus 118 ~~RilR~lrl~~~~~~l~~l~~~l~~~~ 145 (285)
T 3rvy_A 118 VLRVLRLFRLVTAVPQMRKIVSALISVI 145 (285)
T ss_dssp HHGGGGGGHHHHSSTTHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999885
No 5
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=99.76 E-value=2.1e-19 Score=152.50 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=115.1
Q ss_pred CChhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcc
Q psy3171 23 PSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIET 102 (305)
Q Consensus 23 ~~~~~r~~l~~lle~p~ss~~a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~ 102 (305)
..+++|+++|+++| ++.++..+.++|++|++.+++|+.++.+. +..+.+..+|.
T Consensus 6 ~~~~~~~~~~~~~e-------~~~f~~~i~~lil~sv~~v~~et~~~i~~-------------------~~~~~~~~id~ 59 (147)
T 2kyh_A 6 DLGGRVRNIGDVME-------HPLVELGVSYAALLSVIVVVVEYTMQLSG-------------------EYLVRLYLVDL 59 (147)
T ss_dssp CCSHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHHHHHHCCCCH-------------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-------CchHHHHHHHHHHHHHHHHHHHHhHhhch-------------------hHHHHHHHHHH
Confidence 35679999999999 45799999999999999999999875432 13456889999
Q ss_pred eehhhhHHHHHHHHhhcCCcccccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHH
Q psy3171 103 LCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVI 182 (305)
Q Consensus 103 ~f~~iFtlE~iLRlia~~~r~~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvL 182 (305)
+++++|++||++|++++++|++|+++ |++|+++++|++..+..+ ...+++|++
T Consensus 60 ~~~~iF~~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~~~~~~~-------------------------~~lr~lRvl 112 (147)
T 2kyh_A 60 ILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALIE-------------------------GHLAGLGLF 112 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHHHHH-------------------------HHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHHHHH-------------------------hHHHHHHHH
Confidence 99999999999999999999999998 999999999999876541 124678899
Q ss_pred HHHHHHHHhhhcccchhhHHHHHHHHHHH
Q psy3171 183 RLVRVFRIFKLSRHSKGLQILGRECQFIL 211 (305)
Q Consensus 183 RllRIlRILKL~r~~~glrvLl~tl~~sl 211 (305)
|++|++|++|+.|+.+-.+.+..+++.-.
T Consensus 113 RllRv~Rllrl~r~~~~~~~l~~al~~f~ 141 (147)
T 2kyh_A 113 RLVRLLRFLRILLIISRGSKFLSAIADAA 141 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888887544
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.64 E-value=1.8e-16 Score=141.18 Aligned_cols=124 Identities=18% Similarity=0.307 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171 44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL 123 (305)
Q Consensus 44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~ 123 (305)
++.++.+++++|++|++.+++|+.++.+. +..+.+.++|.++.++|++|+++|++++++|+
T Consensus 7 ~~~f~~~i~~lil~~~~~~~~~~~~~~~~-------------------~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~ 67 (223)
T 1orq_C 7 HPLVELGVSYAALLSVIVVVVECTMQLSG-------------------EYLVRLYLVDLILVIILWADYAYRAYKSGDPA 67 (223)
T ss_dssp SHHHHTHHHHHHHHHHHHHHHHHHHHHTT-------------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcccCh-------------------hhhhHHHHHHHHHHHHHHHHHHHHHcccccHH
Confidence 45799999999999999999998765431 35678999999999999999999999999999
Q ss_pred cccccccceeeehhhhhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcc-cchhhHH
Q psy3171 124 NFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSR-HSKGLQI 202 (305)
Q Consensus 124 ~y~r~~~niiD~l~Vlp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r-~~~glrv 202 (305)
+|+|+ |++|+++++|+++...... +. .....+|++|++|++|++|+.+ ..+..+.
T Consensus 68 ~y~~~--~iiDllailP~~~~~~~~~-~~---------------------~~~~~lr~lRllRllR~~r~~~~~~~~~~~ 123 (223)
T 1orq_C 68 GYVKK--TLYEIPALVPAGLLALIEG-HL---------------------AGLGLFRLVRLLRFLRILLIISRGSKFLSA 123 (223)
T ss_dssp HHHHH--HHHHCTTHHHHHHHHHHHH-HH---------------------HTTTCHHHHHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHHH--hHHHHHHHHHHHHHHHHhc-ch---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 9999999999997654210 00 0123566777777777777666 3345667
Q ss_pred HHHHHHHH
Q psy3171 203 LGRECQFI 210 (305)
Q Consensus 203 Ll~tl~~s 210 (305)
+..+++.+
T Consensus 124 l~~~~~~~ 131 (223)
T 1orq_C 124 IADAADKI 131 (223)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 7
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.57 E-value=1.6e-16 Score=150.57 Aligned_cols=119 Identities=16% Similarity=0.117 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHhhhheeEEcCcccccccccccccCCCccccCCCCCCCchhhhhcceehhhhHHHHHHHHhhcCCcc
Q psy3171 44 ARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKL 123 (305)
Q Consensus 44 a~~f~~~i~~lI~lsii~l~let~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~f~~iFtlE~iLRlia~~~r~ 123 (305)
++.|+.+++++|++|+++++++|.|+.+. +....+++++.++..+|++|+++|+++++++.
T Consensus 7 s~~f~~~~~~~i~ls~~~~~~~t~~~~~~-------------------~~~~~~~~~~~~~~~~f~~e~~~r~~~~~~~~ 67 (355)
T 3beh_A 7 LRIYAPLNAVLAAPGLLAVAALTIPDMSG-------------------RSRLALAALLAVIWGAYLLQLAATLLKRRAGV 67 (355)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHTSSSCCH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccchhh-------------------hHHHHHHHHHhHHHHHHHHHHHHhcccccccc
Confidence 45789999999999999999999886532 12335677788888889999999999998888
Q ss_pred cccccccceeeehhh-hhHHHHHHHHhhhhhhhccCCCCCCCCCCcccccccccchhHHHHHHHHHHHhhhcccchhhHH
Q psy3171 124 NFFRDVMNIIDIIAI-IPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQI 202 (305)
Q Consensus 124 ~y~r~~~niiD~l~V-lp~~v~l~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~LrvLRllRIlRILKL~r~~~glrv 202 (305)
.|++++||++|++++ +|++..+. ..+|.+|++|++|++|+.|++++++.
T Consensus 68 ~~~~~~~~i~Dl~~i~~p~~~~~~------------------------------~~~~~~r~lr~~R~lrl~r~~~~~~~ 117 (355)
T 3beh_A 68 VRDRTPKIAIDVLAVLVPLAAFLL------------------------------DGSPDWSLYCAVWLLKPLRDSTFFPV 117 (355)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHS------------------------------CCSGGGGGGGGGGGSHHHHTCSSHHH
T ss_pred eeccCcchHHHHHHHHHHHHHHHh------------------------------ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999 57765321 01356778888888888899999999
Q ss_pred HHHHHHHHH
Q psy3171 203 LGRECQFIL 211 (305)
Q Consensus 203 Ll~tl~~sl 211 (305)
+..+++.+.
T Consensus 118 l~~~l~~~~ 126 (355)
T 3beh_A 118 LGRVLANEA 126 (355)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 999987653
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.48 E-value=0.01 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=1.3
Q ss_pred hhHHHHHHHHHHHhhhcccchhhH
Q psy3171 178 ILRVIRLVRVFRIFKLSRHSKGLQ 201 (305)
Q Consensus 178 ~LrvLRllRIlRILKL~r~~~glr 201 (305)
.+|++|++|++|++ +.|+...++
T Consensus 26 ~lr~lRllRi~ril-l~r~~~~l~ 48 (155)
T 2a9h_A 26 PMLSGLLARLVKLL-LGRHGSALH 48 (155)
T ss_dssp ---------------------CCH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35677777788877 777744443
No 9
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=95.16 E-value=0.0064 Score=36.87 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHhhhcccchhhH
Q psy3171 177 AILRVIRLVRVFRIFKLSRHSKGLQ 201 (305)
Q Consensus 177 ~~LrvLRllRIlRILKL~r~~~glr 201 (305)
..++++|.+|++|.+|.+..++|++
T Consensus 4 ~~l~~lrtlR~LRpLr~isr~~gmk 28 (28)
T 2lcm_A 4 NTIKSLRVLRVLRPLKTIKRLPKLK 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred chhhHHHHHHHhcchHHHhhcccCC
Confidence 4688999999999999999998874
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=93.86 E-value=0.041 Score=44.16 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhccc
Q psy3171 178 ILRVIRLVRVFRIFKLSRH 196 (305)
Q Consensus 178 ~LrvLRllRIlRILKL~r~ 196 (305)
.+|++|++|++|++ +.|+
T Consensus 3 ~lr~lRl~Ri~ri~-L~R~ 20 (122)
T 2ih3_C 3 PMLSGLLARLVKLL-LGRH 20 (122)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHH-HHHh
Confidence 57889999999999 8887
No 11
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=88.95 E-value=0.19 Score=29.81 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.0
Q ss_pred hcceehhhhHHHHHHHHhhcC
Q psy3171 100 IETLCIIWFTFELSVRFLACP 120 (305)
Q Consensus 100 ie~~f~~iFtlE~iLRlia~~ 120 (305)
.|+.|+.+||+|.++|+++.+
T Consensus 2 ~e~~F~~IYtfE~liKi~ArG 22 (26)
T 1qg9_A 2 VEYTFTGIYTFESLIKILARX 22 (26)
T ss_dssp CSCCHHHHHHHHHHHHHHTC-
T ss_pred ceEEeeHHHHHHHHHHHHHhh
Confidence 367899999999999999875
No 12
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=86.60 E-value=1.2 Score=38.31 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhcccchhhHHHHHHHHHHHH
Q psy3171 181 VIRLVRVFRIFKLSRHSKGLQILGRECQFILH 212 (305)
Q Consensus 181 vLRllRIlRILKL~r~~~glrvLl~tl~~sll 212 (305)
++|++|++|++|+.|..+..+...+.+..++.
T Consensus 98 ~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~ 129 (223)
T 1orq_C 98 LFRLVRLLRFLRILLIISRGSKFLSAIADAAD 129 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444434444444444443
No 13
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=83.99 E-value=0.98 Score=39.19 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhhhcccchh-hHHHHHHHHH
Q psy3171 179 LRVIRLVRVFRIFKLSRHSKG-LQILGRECQF 209 (305)
Q Consensus 179 LrvLRllRIlRILKL~r~~~g-lrvLl~tl~~ 209 (305)
+|.+|++|++|++|..+..+- .+++.+++..
T Consensus 101 lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~ 132 (229)
T 4dxw_A 101 LRLLRIFRVLRLISVIPELKQIIEAILESVRR 132 (229)
T ss_dssp CTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455555555555555555544 3566666654
No 14
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=82.03 E-value=1.1 Score=40.11 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHhhhcccchhh-HHHHHHHHH
Q psy3171 178 ILRVIRLVRVFRIFKLSRHSKGL-QILGRECQF 209 (305)
Q Consensus 178 ~LrvLRllRIlRILKL~r~~~gl-rvLl~tl~~ 209 (305)
++|++|++|++|++|..+..+-+ +.+..++..
T Consensus 115 ~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~ 147 (285)
T 3rvy_A 115 ILRVLRVLRLFRLVTAVPQMRKIVSALISVIPG 147 (285)
T ss_dssp HHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665553 555555554
No 15
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=72.54 E-value=1.7 Score=43.01 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=18.7
Q ss_pred cccccceeeehhhhhHHHHHHHHhh
Q psy3171 126 FRDVMNIIDIIAIIPYFITLATVVA 150 (305)
Q Consensus 126 ~r~~~niiD~l~Vlp~~v~l~l~~~ 150 (305)
..+.+.++|.+.++-+.+++++...
T Consensus 237 ~~~~l~~ie~i~~~iFtiE~ilR~~ 261 (514)
T 2r9r_B 237 FTDPFFIVETLCIIWFSFEFLVRFF 261 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778898888888888877643
No 16
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=71.90 E-value=1.8 Score=36.05 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHhhhcccc
Q psy3171 175 SLAILRVIRLVRVFRIFKLSRHS 197 (305)
Q Consensus 175 ~~~~LrvLRllRIlRILKL~r~~ 197 (305)
...++.++..+|++|++|+.|..
T Consensus 17 ~~dli~~lp~lr~lRllRi~ril 39 (155)
T 2a9h_A 17 RGRLIKHMPPMLSGLLARLVKLL 39 (155)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888877
No 17
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=71.43 E-value=1.6 Score=35.97 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=15.4
Q ss_pred ccceeeehhhhhHHHHHHHHh
Q psy3171 129 VMNIIDIIAIIPYFITLATVV 149 (305)
Q Consensus 129 ~~niiD~l~Vlp~~v~l~l~~ 149 (305)
.+.++|.++++-+.+++.+..
T Consensus 53 ~~~~id~~~~~iF~~Ey~lRl 73 (147)
T 2kyh_A 53 RLYLVDLILVIILWADYAYRA 73 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888877654
No 18
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=69.30 E-value=3.7 Score=37.76 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=5.5
Q ss_pred chhhhhccee
Q psy3171 95 DPFFLIETLC 104 (305)
Q Consensus 95 ~~l~~ie~~f 104 (305)
..+.++|.+.
T Consensus 72 ~~~~i~Dl~~ 81 (355)
T 3beh_A 72 TPKIAIDVLA 81 (355)
T ss_dssp HHHHHHHHHH
T ss_pred CcchHHHHHH
Confidence 3455666554
No 19
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=68.95 E-value=3 Score=33.38 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=10.2
Q ss_pred cceeeehhhhhHHHHHHHH
Q psy3171 130 MNIIDIIAIIPYFITLATV 148 (305)
Q Consensus 130 ~niiD~l~Vlp~~v~l~l~ 148 (305)
+..+|.+...-+-+|.++.
T Consensus 39 l~~~d~~~~~iFt~E~~lR 57 (132)
T 1ors_C 39 LYLVDLILVIILWADYAYR 57 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 20
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=52.31 E-value=8.7 Score=30.21 Aligned_cols=13 Identities=8% Similarity=-0.102 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccc
Q psy3171 185 VRVFRIFKLSRHS 197 (305)
Q Consensus 185 lRIlRILKL~r~~ 197 (305)
+|++|++|+.|-.
T Consensus 4 lr~lRl~Ri~ri~ 16 (122)
T 2ih3_C 4 MLSGLLARLVKLL 16 (122)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4444455555544
Done!