RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3171
(305 letters)
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 216 bits (551), Expect = 9e-67
Identities = 105/204 (51%), Positives = 137/204 (67%), Gaps = 22/204 (10%)
Query: 9 REDEGFIKEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLP 68
REDEG+IKEEE+PLP +EFQR+VWLLFEYPESS AR++AI+SV VIL+SIV FCLETLP
Sbjct: 146 REDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLP 205
Query: 69 EFKHYK-------VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPN 121
F+ V T + + I + TDPFF++ETLCIIWF+FE VRF ACP+
Sbjct: 206 IFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPS 265
Query: 122 KLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRV 181
K FF ++MNIIDI+AIIPY++T+ + + ++++
Sbjct: 266 KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKS---------------VLQFQNVRRVVQI 310
Query: 182 IRLVRVFRIFKLSRHSKGLQILGR 205
R++R+ RIFKLSRHSKGLQILG+
Sbjct: 311 FRIMRILRIFKLSRHSKGLQILGQ 334
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 124 bits (312), Expect = 3e-33
Identities = 18/168 (10%), Positives = 40/168 (23%), Gaps = 50/168 (29%)
Query: 39 ESSQAARVVAIISVFVILLSIVIFCLETLPEFK-HYKVFNTTTNGTKIEEDEVPDITDPF 97
R+ A ++ + ++ T+P+ ++
Sbjct: 2 SVLPFLRIYAPLNAVLAAPGLLAVAALTIPDMSGRSRLA--------------------L 41
Query: 98 FLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLN 157
+ + + +L+ L + R ID++A++
Sbjct: 42 AALLAVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFL----------- 90
Query: 158 LPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 205
L L + K R S +LGR
Sbjct: 91 ------------------LDGSPDWSLYCAVWLLKPLRDSTFFPVLGR 120
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 110 bits (276), Expect = 4e-29
Identities = 20/175 (11%), Positives = 50/175 (28%), Gaps = 53/175 (30%)
Query: 31 VWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEV 90
+ + E+P + + LLS+++ +E +
Sbjct: 1 IGDVMEHPLVE-------LGVSYAALLSVIVVVVECTMQLS------------------- 34
Query: 91 PDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVA 150
+ +L++ + +I + + R + + + + +I A++P +
Sbjct: 35 GEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALI--- 89
Query: 151 EEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 205
LA L + RLVR+ R ++
Sbjct: 90 ----------------------EGHLAGLGLFRLVRLLRFLRILLIISRGSKFLS 122
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 63.4 bits (154), Expect = 1e-12
Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 53/175 (30%)
Query: 29 RKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEED 88
R + + E+P A++SV V+++ +
Sbjct: 12 RNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSG----------------------- 48
Query: 89 EVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATV 148
+ +L++ + +I + + R + + + + +I A++P +
Sbjct: 49 ---EYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLA--- 100
Query: 149 VAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL 203
LA L + RLVR+ R ++
Sbjct: 101 ----------------------LIEGHLAGLGLFRLVRLLRFLRILLIISRGSKF 133
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 59.2 bits (143), Expect = 3e-11
Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 46/147 (31%)
Query: 49 IISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWF 108
+ + LLS+++ +E + + +L++ + +I
Sbjct: 10 LGVSYAALLSVIVVVVEYTMQLS-------------------GEYLVRLYLVDLILVIIL 50
Query: 109 TFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDK 168
+ + R + + + + +I A++P +
Sbjct: 51 WADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLALI--------------------- 87
Query: 169 STNQAMSLAILRVIRLVRVFRIFKLSR 195
LA L + RLVR+ R ++
Sbjct: 88 ----EGHLAGLGLFRLVRLLRFLRILL 110
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 48.1 bits (115), Expect = 7e-07
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 48/152 (31%)
Query: 52 VFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFE 111
V +I+L+ V+ T + P + L++ I+F E
Sbjct: 19 VSIIILNAVLIGATT--------------------YELDPLFLETIHLLDYGITIFFVIE 58
Query: 112 LSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTN 171
+ +RF+ K +FF+ NI D + + I +
Sbjct: 59 ILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPIP------------------------- 93
Query: 172 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL 203
+ + V+RL+R+FR+ +L L+ +
Sbjct: 94 ---NNSSFLVLRLLRIFRVLRLISVIPELKQI 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 6e-06
Identities = 53/320 (16%), Positives = 101/320 (31%), Gaps = 91/320 (28%)
Query: 11 DEGFIKEEEKP-LPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETLPE 69
D +++ K L E + ++ + + L + E
Sbjct: 34 DCKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRL-------------FWTLLSKQE 76
Query: 70 FKHYKVFNTTTNGTKIEEDEVPDITDPFFL--IETLCIIWFTFELSVRFLACPNKLNFFR 127
+ + F +EE + F + I+T ++ ++ ++L +
Sbjct: 77 -EMVQKF--------VEEVLRINY--KFLMSPIKTEQRQ--PSMMTRMYIEQRDRL--YN 121
Query: 128 DVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKA--PVSPQDKSTNQAM------SLAI- 178
D Y V+ + L L +A + P + +A+
Sbjct: 122 DNQ------VFAKYN------VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 179 -LRVIRLVRV--FRIF--KLSRHSKGLQILGRECQFILHI-------------IPSSI-- 218
++ F+IF L + +L + + I I I
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 219 ---LFRGIFVDRYYKETCIIVLR-LSKAKVPIVIF----RYLLCNSRYSQVTRVLRAATH 270
R + + Y+ C++VL + AK F + LL +R+ QVT L AAT
Sbjct: 230 IQAELRRLLKSKPYEN-CLLVLLNVQNAKA-WNAFNLSCKILL-TTRFKQVTDFLSAATT 286
Query: 271 YQVDLRGTPDQVDLTGTPDQ 290
+ L D +T TPD+
Sbjct: 287 THISL----DHHSMTLTPDE 302
Score = 37.9 bits (87), Expect = 0.003
Identities = 50/340 (14%), Positives = 89/340 (26%), Gaps = 124/340 (36%)
Query: 7 LSREDEGFIKEEEKPLPSHEFQRKVWL-LFEYPESSQAA----RVVAIISVFVI------ 55
L +E K L + + + P + R ++II+ +
Sbjct: 291 LDHHSMTLTPDEVKSL----LLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATW 344
Query: 56 ----------LLSIVIFCLETL--PEFKH-YK---VFNTTTNGTKIEEDEVPDITDPFFL 99
L +I+ L L E++ + VF I
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP---PSAHIPT------------ 389
Query: 100 IETLCIIW----------FTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVV 149
L +IW +L L + ++I I Y +
Sbjct: 390 -ILLSLIWFDVIKSDVMVVVNKLHKYSLV---EKQPKESTISIPSI-----YLELKVKLE 440
Query: 150 AEEE------DVLNLPKA------PVSPQD-----------KSTNQAMSLAILRVIRLVR 186
E D N+PK D K+ + + R++ L
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-- 498
Query: 187 VFRIF---KLSRHSKG--------LQILGRECQFILHIIPSSILFRGI------FVDRY- 228
FR F K+ RH L L + + +I + + + F+ +
Sbjct: 499 DFR-FLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 229 -----YKETCIIVLRLSKAKVPIVIFRYLLCNSRYSQVTR 263
K T ++ + L I + QV R
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIF-------EEAHKQVQR 589
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 41.4 bits (97), Expect = 8e-05
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 175 SLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKE 231
+ + L R+ ++ L RH L R ++ +L E
Sbjct: 23 HMPPMLSGLLARLVKLL-LGRHGSALH--WRAAGAATVLLVIVLLAGSYLA--VLAE 74
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 38.7 bits (90), Expect = 6e-04
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 179 LRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKE 231
+ L R+ ++ L RH LQ R ++ +L E
Sbjct: 10 MLSGLLARLVKLL-LGRHGSALQ--WRAAGAATVLLVIVLLAGSYLA--VLAE 57
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 37.8 bits (88), Expect = 8e-04
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 176 LAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKE 231
+A + L R+ ++ L RH L R ++ +L E
Sbjct: 1 MAPMLSGLLARLVKLL-LGRHGSALH--WRAAGAATVLLVIVLLAGSYLA--VLAE 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 47/280 (16%), Positives = 82/280 (29%), Gaps = 113/280 (40%)
Query: 78 TTTNGTKIEED-EVPDITDPFFLIETLCIIWFTF---------------------ELSVR 115
T ++G+ +E VP T FF+ L F EL +
Sbjct: 10 TLSHGS-LEHVLLVP--TASFFIASQL---QEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 116 FLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAE-EEDVL----------NLPKAPVS 164
FL + V ++++ + + L + E E L L + +
Sbjct: 64 FLG------Y---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 165 PQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGRECQFILHIIPSSILFRG-- 222
K+ + + + +R + R +S LFR
Sbjct: 115 TLVKTK---------------ELIKNYITARI-----MAKRP----FDKKSNSALFRAVG 150
Query: 223 --------IF-----VDRYYKETCIIVLR-LSKAKVPIVIFRYLLCNSR---YSQVTRVL 265
IF D Y++E LR L + +V L+ S + L
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEE-----LRDLYQTYHVLV--GDLIKFSAETLSELIRTTL 203
Query: 266 RAATHYQVDLRGTPDQVDLTG---TPDQVDLVGTPDQVYL 302
A + +G +++ P TPD+ YL
Sbjct: 204 DAEKVFT---QG----LNILEWLENPSN-----TPDKDYL 231
Score = 39.3 bits (91), Expect = 0.001
Identities = 51/325 (15%), Positives = 91/325 (28%), Gaps = 116/325 (35%)
Query: 16 KEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIF--------CLETL 67
+ +K S LF A ++VAI F E L
Sbjct: 135 RPFDKKSNS--------ALFRAVGEGNA-QLVAI------------FGGQGNTDDYFEEL 173
Query: 68 PE-FKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLN-F 125
+ ++ Y + D LI+ + E +
Sbjct: 174 RDLYQTYH----------------VLVGD---LIKF------SAETLSELIRTTLDAEKV 208
Query: 126 FRDVMNII------------DIIAIIPY---FITLA-----TVVAEEEDVLNLPKAPVSP 165
F +NI+ D + IP I + V A+ +L +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK---LLGFTPGELRS 265
Query: 166 QDKST---NQAMSLAILRVIRLVRVFRIFKLSRHSKGLQIL---GRECQ--FILHIIPSS 217
K +Q + A+ I + F K + +L G C + +P S
Sbjct: 266 YLKGATGHSQGLVTAV--AIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 218 ILFRGIFVDRYYKE------TCIIVLR-LSKAKVPIVIFRYLLCNSRYSQVTRVLRAATH 270
IL E + ++ + L++ +V + + NS L A
Sbjct: 323 IL-------EDSLENNEGVPSPMLSISNLTQEQVQDYVNK---TNSH-------LPAGKQ 365
Query: 271 YQVDLRGTPDQVDLTGTPDQVDLVG 295
++ L + ++G P L G
Sbjct: 366 VEISLVNGAKNLVVSGPP--QSLYG 388
Score = 28.9 bits (64), Expect = 2.9
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 24/62 (38%)
Query: 152 EEDVLNLPKAPVSPQDKSTNQ----AMSLAILRVIR---LVRVFRIFKLSRHSKGLQILG 204
E+ +L+ + T Q M A ++ L+ F + HS LG
Sbjct: 1722 EKGLLSATQ--------FT-QPALTLMEKAAFEDLKSKGLIPADATF--AGHS-----LG 1765
Query: 205 RE 206
E
Sbjct: 1766 -E 1766
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 36.6 bits (85), Expect = 0.006
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 34/122 (27%)
Query: 75 VFNTTTNGTKIEEDEVPDITDPFFLIETLCIIWFTFELSVRFLACPNKLNFFRDVMNIID 134
V N T G + + + L + I FT E+ +R ++++FF+D ++ D
Sbjct: 41 VLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV--HRISFFKDPWSLFD 98
Query: 135 ----IIAIIPYFITLATVVAEEEDVLNLPKAPVSPQDKSTNQAMSLAILRVIRLVRVFRI 190
I+++P L +LRV+RL R+
Sbjct: 99 FFVVAISLVPTSSGFE----------------------------ILRVLRVLRLFRLVTA 130
Query: 191 FK 192
Sbjct: 131 VP 132
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 29.6 bits (67), Expect = 1.3
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 222 GIFVDRYYKETCIIVLRLSKAKVPIVIFRYLLCNSR---YSQVTRVLRAATHYQVDLRGT 278
G V+ +T +++LR KV F L NS + +R TH V +
Sbjct: 273 GYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDV----S 328
Query: 279 PDQVDLT 285
+ ++
Sbjct: 329 RNDIEEA 335
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.1
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 16 KEEEKPLPSHEFQRKVWLLFEYPESSQAARVVAII 50
K+ K L + K L+ +S+ A + A +
Sbjct: 19 KQALKKLQA---SLK---LYA-DDSAPALAIKATM 46
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 28.2 bits (64), Expect = 4.1
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 208 QFILHIIPSSILFRGIFVDRYYKETCII 235
+ IL +IPS I+ G+ C I
Sbjct: 63 KTILRLIPSGIMREGV--------ACYI 82
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 27.8 bits (63), Expect = 4.5
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 208 QFILHIIPSSILFRGIFVDRYYKETCII 235
+ +LH+IPS IL + II
Sbjct: 50 KTVLHLIPSGILRENV--------ISII 69
>2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway,
oxidoreductase; 2.00A {Pseudomonas putida}
Length = 378
Score = 27.6 bits (61), Expect = 6.2
Identities = 14/45 (31%), Positives = 16/45 (35%)
Query: 256 SRYSQVTRVLRAATHYQVDLRGTPDQVDLTGTPDQVDLVGTPDQV 300
+ R Y D P DL D V LVG+PD V
Sbjct: 283 RYLIPIWRRFGMMDGYAKDAGIDPVDADLEFLVDNVFLVGSPDTV 327
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.421
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,752,182
Number of extensions: 284871
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 40
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)