RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3171
         (305 letters)



>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
           pernix [TaxId: 56636]}
          Length = 132

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 19/161 (11%), Positives = 46/161 (28%), Gaps = 46/161 (28%)

Query: 45  RVVAIISVFVILLSIVIFCLETLPEFKHYKVFNTTTNGTKIEEDEVPDITDPFFLIETLC 104
            +V +   +  LLS+++  +E   +                            +L++ + 
Sbjct: 6   PLVELGVSYAALLSVIVVVVEYTMQLSGE-------------------YLVRLYLVDLIL 46

Query: 105 IIWFTFELSVRFLACPNKLNFFRDVMNIIDIIAIIPYFITLATVVAEEEDVLNLPKAPVS 164
           +I    + + R     +   + +    + +I A++P  +                     
Sbjct: 47  VIILWADYAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLAL------------------ 86

Query: 165 PQDKSTNQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGR 205
                      LA L + RLVR+ R  ++            
Sbjct: 87  -------IEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLS 120


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
           [TaxId: 274]}
          Length = 1119

 Score = 28.2 bits (62), Expect = 1.4
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 13/73 (17%)

Query: 180 RVIR--LVRVF-RIFKLSRHSKGLQILGRECQFILHIIPSSILFRGIFVDRYYKETCIIV 236
           RVI   + R     F       G  I        +  +P     RG ++D   +   ++ 
Sbjct: 134 RVIVSQIHRSPGVYFTPDPARPGRYI------ASIIPLPK----RGPWIDLEVEPNGVVS 183

Query: 237 LRLSKAKVPIVIF 249
           ++++K K P+V+ 
Sbjct: 184 MKVNKRKFPLVLL 196


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.421 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,153,305
Number of extensions: 53936
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)