BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3172
         (157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
           And Ea2
 pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
 pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
          Length = 501

 Score =  200 bits (508), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/146 (65%), Positives = 114/146 (78%)

Query: 12  FDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSV 71
           F++ AY+    +R GQDPY  NK+NQ  SD    +R +PDTRH  C R     DLPATSV
Sbjct: 11  FNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSV 70

Query: 72  IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDK 131
           +ITFHNEARSALLR+VVS++ ++P HL+KEIILVDD+S+DP DG  L +IEKV VLRND+
Sbjct: 71  VITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDR 130

Query: 132 REGLMRSRVKGADAATAPVLTFLDSH 157
           REGLMRSRV+GADAA A VLTFLDSH
Sbjct: 131 REGLMRSRVRGADAAQAKVLTFLDSH 156


>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
           Mn2+
 pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
           Galnac-ser On Lectin Domain
          Length = 570

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 81/132 (61%), Gaps = 4/132 (3%)

Query: 30  YESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVVS 89
           Y  N +N   SD    NR +PD RHP C        LP TS+II FHNE  S+LLR+V S
Sbjct: 75  YRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHS 134

Query: 90  IINRTPAHLLKEIILVDDFSDDPSDGEELE----RIEKVSVLRNDKREGLMRSRVKGADA 145
           ++NR+P  L+ EI+LVDDFSD     + LE        V +LR  KREGL+R+R+ GA  
Sbjct: 135 VLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKREGLIRTRMLGASV 194

Query: 146 ATAPVLTFLDSH 157
           AT  V+TFLDSH
Sbjct: 195 ATGDVITFLDSH 206


>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
           Acetylgalactosaminyltransferase-T1
          Length = 472

 Score =  111 bits (277), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/124 (46%), Positives = 79/124 (63%), Gaps = 5/124 (4%)

Query: 39  ASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVVSIINRTPAHL 98
           AS+    NR +PD R   C     P +LP TSV+I FHNEA S LLR+V S+INR+P H+
Sbjct: 1   ASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHM 60

Query: 99  LKEIILVDDFSDDPSDGEELERIEK-----VSVLRNDKREGLMRSRVKGADAATAPVLTF 153
           ++EI+LVDD S+       LE   K     V V+R ++R GL+R+R+KGA  +   V+TF
Sbjct: 61  IEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITF 120

Query: 154 LDSH 157
           LD+H
Sbjct: 121 LDAH 124


>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 26.9 bits (58), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 44  PSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEII 103
           P++R  P        R   P +LP   +++  +NE    L  ++ +  N      L+ ++
Sbjct: 125 PTDRPFP--------RPLQPEELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVV 176

Query: 104 LVDDFSDD 111
           L DD   D
Sbjct: 177 LCDDGGTD 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,795,262
Number of Sequences: 62578
Number of extensions: 186842
Number of successful extensions: 267
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 4
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)