Query psy3172
Match_columns 157
No_of_seqs 172 out of 1785
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 18:12:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3738|consensus 99.9 1.5E-25 3.3E-30 179.3 9.6 148 10-157 67-214 (559)
2 KOG3737|consensus 99.9 7E-24 1.5E-28 169.7 7.6 132 26-157 114-250 (603)
3 KOG3736|consensus 99.9 1.6E-23 3.4E-28 176.2 5.2 142 16-157 90-236 (578)
4 PRK10073 putative glycosyl tra 99.9 1.2E-21 2.6E-26 157.3 12.6 88 66-157 5-95 (328)
5 PRK10018 putative glycosyl tra 99.9 6.4E-21 1.4E-25 150.0 13.0 90 65-157 3-95 (279)
6 cd02510 pp-GalNAc-T pp-GalNAc- 99.8 7.9E-20 1.7E-24 144.3 11.5 87 70-157 1-93 (299)
7 cd06427 CESA_like_2 CESA_like_ 99.8 1.9E-19 4.1E-24 137.8 11.4 90 67-157 1-94 (241)
8 cd04184 GT2_RfbC_Mx_like Myxoc 99.8 2.8E-19 6.1E-24 132.4 11.4 88 67-157 1-93 (202)
9 PRK10063 putative glycosyl tra 99.8 5.3E-19 1.1E-23 136.9 12.0 87 67-157 1-92 (248)
10 TIGR03111 glyc2_xrt_Gpos1 puta 99.8 1.3E-18 2.7E-23 144.6 13.3 93 64-157 46-141 (439)
11 cd06437 CESA_CaSu_A2 Cellulose 99.8 9.7E-19 2.1E-23 132.9 11.6 89 67-157 1-97 (232)
12 COG0463 WcaA Glycosyltransfera 99.8 8.6E-19 1.9E-23 125.8 10.5 89 66-157 2-93 (291)
13 cd02520 Glucosylceramide_synth 99.8 1.7E-18 3.7E-23 128.8 11.6 88 67-157 1-96 (196)
14 PF00535 Glycos_transf_2: Glyc 99.8 9.1E-19 2E-23 124.4 9.6 85 70-157 1-88 (169)
15 PRK11204 N-glycosyltransferase 99.8 2.7E-18 5.9E-23 141.3 13.5 90 65-157 52-144 (420)
16 PRK14583 hmsR N-glycosyltransf 99.8 2.7E-18 5.9E-23 142.8 13.3 89 66-157 74-165 (444)
17 cd04195 GT2_AmsE_like GT2_AmsE 99.8 1.9E-18 4.1E-23 128.0 10.9 86 70-157 1-90 (201)
18 cd04196 GT_2_like_d Subfamily 99.8 2.9E-18 6.3E-23 127.6 11.2 85 70-157 1-89 (214)
19 TIGR03469 HonB hopene-associat 99.8 4.1E-18 8.9E-23 139.3 13.0 91 64-157 37-143 (384)
20 cd06442 DPM1_like DPM1_like re 99.8 3E-18 6.6E-23 128.8 10.7 84 71-157 1-88 (224)
21 PTZ00260 dolichyl-phosphate be 99.8 3.4E-18 7.3E-23 137.6 11.5 93 64-157 67-172 (333)
22 cd06439 CESA_like_1 CESA_like_ 99.8 6.1E-18 1.3E-22 129.5 11.9 91 65-157 27-119 (251)
23 cd06433 GT_2_WfgS_like WfgS an 99.8 3.7E-18 7.9E-23 125.3 10.0 85 70-157 1-85 (202)
24 PLN02726 dolichyl-phosphate be 99.8 1.2E-17 2.7E-22 128.2 12.9 90 65-157 7-103 (243)
25 cd06913 beta3GnTL1_like Beta 1 99.8 7.1E-18 1.5E-22 127.1 10.8 84 71-157 1-94 (219)
26 cd06421 CESA_CelA_like CESA_Ce 99.8 1.1E-17 2.4E-22 126.3 11.2 91 67-157 1-94 (234)
27 PRK10714 undecaprenyl phosphat 99.7 2.2E-17 4.7E-22 132.5 12.1 89 66-157 5-100 (325)
28 cd04188 DPG_synthase DPG_synth 99.7 1.5E-17 3.3E-22 124.6 9.2 84 71-157 1-92 (211)
29 cd02511 Beta4Glucosyltransfera 99.7 2.7E-17 5.9E-22 125.4 10.6 81 68-157 1-81 (229)
30 TIGR03472 HpnI hopanoid biosyn 99.7 7.7E-17 1.7E-21 131.4 12.9 89 66-157 40-136 (373)
31 PRK13915 putative glucosyl-3-p 99.7 2.6E-17 5.7E-22 131.0 9.9 91 66-157 30-125 (306)
32 cd06435 CESA_NdvC_like NdvC_li 99.7 5.3E-17 1.2E-21 123.3 10.8 86 70-157 1-94 (236)
33 cd06423 CESA_like CESA_like is 99.7 4.8E-17 1E-21 115.6 9.3 84 71-157 1-88 (180)
34 cd06434 GT2_HAS Hyaluronan syn 99.7 1.2E-16 2.5E-21 121.0 11.9 85 68-157 1-87 (235)
35 cd06438 EpsO_like EpsO protein 99.7 9.1E-17 2E-21 118.1 10.0 86 71-157 1-91 (183)
36 cd04192 GT_2_like_e Subfamily 99.7 1.1E-16 2.5E-21 120.1 10.4 86 71-157 1-92 (229)
37 cd04187 DPM1_like_bac Bacteria 99.7 1.3E-16 2.9E-21 116.6 9.9 84 71-157 1-90 (181)
38 cd04186 GT_2_like_c Subfamily 99.7 3.1E-16 6.6E-21 111.8 10.8 84 71-157 1-84 (166)
39 cd04179 DPM_DPG-synthase_like 99.7 1.9E-16 4.2E-21 115.5 9.5 84 71-157 1-89 (185)
40 cd06420 GT2_Chondriotin_Pol_N 99.7 3.4E-16 7.3E-21 114.1 10.4 84 71-157 1-89 (182)
41 cd02522 GT_2_like_a GT_2_like_ 99.7 2.7E-16 5.9E-21 117.9 9.9 82 69-157 1-82 (221)
42 cd02525 Succinoglycan_BP_ExoA 99.7 5E-16 1.1E-20 118.0 11.4 88 68-157 1-91 (249)
43 cd06436 GlcNAc-1-P_transferase 99.7 3.4E-16 7.5E-21 116.1 10.2 83 71-157 1-99 (191)
44 cd04185 GT_2_like_b Subfamily 99.7 4.9E-16 1.1E-20 115.4 10.6 84 71-157 1-89 (202)
45 cd02526 GT2_RfbF_like RfbF is 99.7 8E-16 1.7E-20 116.6 9.7 82 71-157 1-85 (237)
46 PRK11498 bcsA cellulose syntha 99.6 1.3E-15 2.7E-20 134.4 11.8 91 65-157 258-349 (852)
47 TIGR03030 CelA cellulose synth 99.6 2.6E-15 5.6E-20 131.4 12.5 94 64-157 128-238 (713)
48 COG1215 Glycosyltransferases, 99.6 5.9E-15 1.3E-19 121.5 11.2 90 66-157 53-147 (439)
49 PF13641 Glyco_tranf_2_3: Glyc 99.6 1.3E-15 2.9E-20 114.9 5.8 88 67-157 1-96 (228)
50 KOG2978|consensus 99.6 7.7E-15 1.7E-19 107.7 9.4 89 67-157 3-98 (238)
51 TIGR01556 rhamnosyltran L-rham 99.6 2.5E-14 5.3E-19 111.9 10.1 79 74-157 1-83 (281)
52 KOG2977|consensus 99.5 3.5E-14 7.6E-19 110.0 9.0 90 68-157 68-167 (323)
53 COG1216 Predicted glycosyltran 99.5 1.1E-13 2.3E-18 110.0 10.7 89 66-157 2-94 (305)
54 cd04190 Chitin_synth_C C-termi 99.5 5.6E-14 1.2E-18 108.2 6.6 66 71-157 1-83 (244)
55 PF10111 Glyco_tranf_2_2: Glyc 99.5 9.2E-13 2E-17 103.6 11.2 86 70-157 1-98 (281)
56 PRK14716 bacteriophage N4 adso 99.4 1.6E-12 3.4E-17 109.7 12.3 90 65-157 64-168 (504)
57 cd04191 Glucan_BSP_ModH Glucan 99.4 3.1E-12 6.6E-17 99.6 11.0 87 69-157 1-105 (254)
58 cd00761 Glyco_tranf_GTA_type G 99.3 1.2E-11 2.7E-16 85.6 10.0 84 71-157 1-87 (156)
59 PRK11234 nfrB bacteriophage N4 99.3 2.2E-11 4.8E-16 106.6 11.8 90 65-157 61-165 (727)
60 PRK15489 nfrB bacteriophage N4 99.2 1.1E-10 2.3E-15 101.7 10.1 90 65-157 69-173 (703)
61 PRK05454 glucosyltransferase M 99.1 1.6E-09 3.4E-14 94.7 13.4 91 65-157 122-230 (691)
62 cd02514 GT13_GLCNAC-TI GT13_GL 98.7 1.1E-07 2.3E-12 76.7 9.9 86 69-157 2-107 (334)
63 PF13704 Glyco_tranf_2_4: Glyc 98.4 5.2E-06 1.1E-10 54.9 9.0 76 76-157 1-81 (97)
64 KOG2547|consensus 97.7 0.00056 1.2E-08 55.6 10.0 90 65-157 83-180 (431)
65 PF13712 Glyco_tranf_2_5: Glyc 97.4 0.00041 9E-09 52.8 5.4 64 69-157 1-64 (217)
66 PF09488 Osmo_MPGsynth: Mannos 97.2 0.0073 1.6E-07 49.0 10.8 85 67-157 50-169 (381)
67 PRK14503 mannosyl-3-phosphogly 96.7 0.018 4E-07 46.8 9.4 85 67-157 51-170 (393)
68 TIGR02460 osmo_MPGsynth mannos 96.7 0.019 4.2E-07 46.4 9.4 85 67-157 50-169 (381)
69 PF03452 Anp1: Anp1; InterPro 96.6 0.037 8.1E-07 43.5 10.5 92 65-157 23-152 (269)
70 COG4092 Predicted glycosyltran 96.4 0.016 3.5E-07 45.4 7.0 92 66-157 1-104 (346)
71 PF03142 Chitin_synth_2: Chiti 96.4 0.012 2.5E-07 50.5 6.7 43 67-109 25-67 (527)
72 PRK14502 bifunctional mannosyl 95.7 0.093 2E-06 46.4 9.4 85 67-157 55-174 (694)
73 PF13733 Glyco_transf_7N: N-te 95.3 0.23 4.9E-06 35.1 8.4 68 67-157 47-121 (136)
74 PLN02458 transferase, transfer 95.2 0.19 4.2E-06 40.5 8.7 89 66-157 111-212 (346)
75 PF03071 GNT-I: GNT-I family; 95.1 0.12 2.5E-06 43.4 7.6 61 66-128 92-153 (434)
76 cd00218 GlcAT-I Beta1,3-glucur 95.1 0.27 5.9E-06 37.6 9.0 86 67-157 1-105 (223)
77 KOG1476|consensus 93.8 1.3 2.8E-05 35.7 10.3 88 66-157 86-191 (330)
78 PF11316 Rhamno_transf: Putati 93.2 0.66 1.4E-05 35.8 7.8 72 83-157 44-124 (234)
79 cd00899 b4GalT Beta-4-Galactos 92.9 0.76 1.6E-05 35.2 7.7 67 68-157 3-76 (219)
80 PF11397 GlcNAc: Glycosyltrans 92.7 1.6 3.6E-05 35.6 9.8 88 68-157 1-126 (343)
81 COG2943 MdoH Membrane glycosyl 92.5 1.3 2.9E-05 38.3 9.2 86 68-157 145-250 (736)
82 KOG3916|consensus 92.4 1.6 3.4E-05 35.6 9.1 68 67-157 151-225 (372)
83 PF05679 CHGN: Chondroitin N-a 91.8 3 6.4E-05 35.8 10.8 91 64-157 244-351 (499)
84 COG1209 RfbA dTDP-glucose pyro 91.2 3.2 6.9E-05 32.9 9.5 77 72-154 25-106 (286)
85 KOG3588|consensus 89.7 3.3 7.1E-05 34.4 8.6 89 65-156 227-322 (494)
86 PF06306 CgtA: Beta-1,4-N-acet 89.0 2.1 4.5E-05 34.7 6.9 84 68-157 88-185 (347)
87 cd02540 GT2_GlmU_N_bac N-termi 86.9 9.5 0.00021 28.3 9.3 78 72-157 20-99 (229)
88 PLN02190 cellulose synthase-li 86.8 2.3 5.1E-05 38.1 6.6 50 65-114 91-143 (756)
89 PLN02893 Cellulose synthase-li 86.1 1.8 4E-05 38.7 5.5 38 120-157 262-308 (734)
90 cd02503 MobA MobA catalyzes th 85.9 7.4 0.00016 27.9 8.0 66 81-157 27-93 (181)
91 TIGR03202 pucB xanthine dehydr 85.2 12 0.00026 27.1 9.5 76 77-157 24-105 (190)
92 PF00483 NTP_transferase: Nucl 85.0 5.8 0.00013 29.9 7.4 81 72-157 24-112 (248)
93 cd04181 NTP_transferase NTP_tr 84.9 9.3 0.0002 28.0 8.3 79 72-157 23-105 (217)
94 cd02509 GDP-M1P_Guanylyltransf 84.5 7.2 0.00016 30.5 7.8 82 72-157 26-112 (274)
95 PF03214 RGP: Reversibly glyco 83.2 1.8 3.9E-05 35.1 3.9 84 68-157 9-101 (348)
96 cd06431 GT8_LARGE_C LARGE cata 83.2 21 0.00045 28.2 10.0 87 68-157 2-107 (280)
97 cd02523 PC_cytidylyltransferas 83.1 17 0.00036 27.1 9.1 78 72-157 23-102 (229)
98 PRK00317 mobA molybdopterin-gu 83.0 5.7 0.00012 29.0 6.4 69 77-157 28-98 (193)
99 cd04182 GT_2_like_f GT_2_like_ 82.6 15 0.00032 26.1 8.6 71 81-157 27-100 (186)
100 TIGR03310 matur_ygfJ molybdenu 82.6 11 0.00025 26.9 7.8 72 81-157 26-99 (188)
101 PF09258 Glyco_transf_64: Glyc 81.5 5.6 0.00012 30.9 6.0 83 69-157 1-85 (247)
102 PF12804 NTP_transf_3: MobA-li 80.9 16 0.00035 25.4 9.8 75 73-157 19-95 (160)
103 PRK02726 molybdopterin-guanine 78.7 24 0.00051 26.1 8.5 71 77-157 31-102 (200)
104 cd06915 NTP_transferase_WcbM_l 78.3 24 0.00051 25.8 8.8 79 72-157 23-105 (223)
105 COG1213 Predicted sugar nucleo 75.9 6.4 0.00014 30.5 4.7 71 82-157 33-106 (239)
106 TIGR02665 molyb_mobA molybdopt 75.7 27 0.00058 25.0 9.0 67 82-157 29-97 (186)
107 PF13896 Glyco_transf_49: Glyc 75.2 22 0.00047 28.6 7.9 26 132-157 112-137 (317)
108 PLN02189 cellulose synthase 75.1 15 0.00033 34.3 7.5 73 82-157 440-542 (1040)
109 cd02516 CDP-ME_synthetase CDP- 75.1 26 0.00057 25.7 7.9 79 72-157 22-105 (218)
110 COG2068 Uncharacterized MobA-r 73.8 36 0.00078 25.7 9.7 71 82-157 33-106 (199)
111 KOG1413|consensus 73.0 9 0.00019 31.6 5.1 50 65-115 65-114 (411)
112 cd04198 eIF-2B_gamma_N The N-t 72.5 36 0.00077 25.3 8.1 79 72-157 25-110 (214)
113 PF01697 Glyco_transf_92: Glyc 72.5 35 0.00076 26.2 8.3 85 69-157 3-113 (285)
114 PF11051 Mannosyl_trans3: Mann 72.4 33 0.00072 26.8 8.2 87 70-157 3-100 (271)
115 cd02538 G1P_TT_short G1P_TT_sh 72.3 39 0.00084 25.4 9.5 80 72-157 25-108 (240)
116 PRK15480 glucose-1-phosphate t 72.2 47 0.001 26.3 10.0 77 72-154 28-109 (292)
117 cd06422 NTP_transferase_like_1 70.7 40 0.00087 24.9 8.9 79 72-157 24-106 (221)
118 TIGR00453 ispD 2-C-methyl-D-er 69.6 39 0.00085 24.9 7.8 75 77-157 25-100 (217)
119 PRK14360 glmU bifunctional N-a 69.0 42 0.0009 27.9 8.5 79 72-157 23-103 (450)
120 PRK14355 glmU bifunctional N-a 69.0 53 0.0011 27.5 9.2 79 72-157 25-105 (459)
121 TIGR01207 rmlA glucose-1-phosp 67.7 59 0.0013 25.6 9.9 77 72-154 24-105 (286)
122 PRK09382 ispDF bifunctional 2- 66.1 54 0.0012 27.1 8.5 71 82-157 35-105 (378)
123 COG1211 IspD 4-diphosphocytidy 65.4 61 0.0013 25.0 8.0 70 82-156 34-108 (230)
124 cd04189 G1P_TT_long G1P_TT_lon 64.1 57 0.0012 24.2 9.8 78 72-157 25-107 (236)
125 PRK14352 glmU bifunctional N-a 64.1 71 0.0015 27.0 9.1 79 72-157 26-108 (482)
126 PLN03180 reversibly glycosylat 64.0 16 0.00035 29.8 4.8 80 66-157 10-103 (346)
127 PF03360 Glyco_transf_43: Glyc 61.5 18 0.00039 27.4 4.5 59 97-157 10-87 (207)
128 PLN02638 cellulose synthase A 61.3 39 0.00084 31.9 7.2 73 82-157 458-560 (1079)
129 PLN02893 Cellulose synthase-li 60.9 22 0.00047 32.2 5.5 51 64-114 98-151 (734)
130 PRK14353 glmU bifunctional N-a 60.4 67 0.0014 26.6 8.2 79 72-157 27-108 (446)
131 cd02518 GT2_SpsF SpsF is a gly 60.0 70 0.0015 23.9 8.9 71 82-157 26-97 (233)
132 PRK14356 glmU bifunctional N-a 58.8 71 0.0015 26.6 8.1 78 72-157 27-107 (456)
133 TIGR03552 F420_cofC 2-phospho- 58.3 68 0.0015 23.2 8.4 52 101-157 47-100 (195)
134 TIGR01173 glmU UDP-N-acetylglu 58.1 97 0.0021 25.6 8.8 78 72-157 22-100 (451)
135 PF01501 Glyco_transf_8: Glyco 57.9 36 0.00079 25.2 5.7 76 82-157 13-108 (250)
136 PRK00155 ispD 2-C-methyl-D-ery 57.6 77 0.0017 23.6 8.2 71 82-157 33-105 (227)
137 PLN02195 cellulose synthase A 54.2 32 0.0007 32.1 5.5 50 64-113 249-301 (977)
138 PLN02195 cellulose synthase A 53.0 18 0.00039 33.6 3.8 37 121-157 418-463 (977)
139 PLN02436 cellulose synthase A 52.7 37 0.00079 32.1 5.6 51 64-114 362-415 (1094)
140 cd04194 GT8_A4GalT_like A4GalT 52.1 1E+02 0.0022 23.3 8.5 74 82-157 14-105 (248)
141 PLN02915 cellulose synthase A 52.0 41 0.00089 31.6 5.8 50 65-114 285-337 (1044)
142 PF11735 CAP59_mtransfer: Cryp 51.8 1.1E+02 0.0024 23.7 10.3 42 69-113 2-48 (241)
143 COG0746 MobA Molybdopterin-gua 51.7 84 0.0018 23.3 6.7 34 124-157 62-96 (192)
144 TIGR00334 5S_RNA_mat_M5 ribonu 51.3 51 0.0011 24.3 5.3 11 147-157 47-57 (174)
145 PLN02400 cellulose synthase 51.2 37 0.00081 32.0 5.4 51 64-114 353-406 (1085)
146 cd06428 M1P_guanylylT_A_like_N 50.8 1.1E+02 0.0024 23.3 8.5 80 72-157 25-112 (257)
147 PLN02638 cellulose synthase A 50.6 38 0.00083 32.0 5.4 51 64-114 346-399 (1079)
148 PRK13385 2-C-methyl-D-erythrit 50.0 1.1E+02 0.0023 22.9 8.5 71 82-157 32-107 (230)
149 PLN02189 cellulose synthase 50.0 40 0.00088 31.7 5.5 50 65-114 329-381 (1040)
150 PRK14357 glmU bifunctional N-a 49.7 1.5E+02 0.0032 24.6 9.3 76 72-157 22-98 (448)
151 PF00455 DeoRC: DeoR C termina 49.6 44 0.00095 23.9 4.8 44 84-129 6-49 (161)
152 KOG2733|consensus 48.2 1.2E+02 0.0025 25.5 7.3 52 66-119 31-82 (423)
153 PRK14358 glmU bifunctional N-a 48.2 1.5E+02 0.0032 25.2 8.4 77 72-157 29-108 (481)
154 PRK14489 putative bifunctional 44.5 1.7E+02 0.0038 23.8 9.5 71 77-157 30-102 (366)
155 PF04666 Glyco_transf_54: N-Ac 44.4 36 0.00078 27.3 3.9 31 66-96 51-82 (297)
156 PLN02248 cellulose synthase-li 44.1 53 0.0012 31.2 5.3 50 65-114 365-417 (1135)
157 PF01128 IspD: 2-C-methyl-D-er 43.5 1.3E+02 0.0029 22.9 6.7 69 82-156 30-100 (221)
158 PRK09451 glmU bifunctional N-a 42.3 2E+02 0.0044 23.9 9.4 78 72-157 27-105 (456)
159 KOG1111|consensus 42.1 87 0.0019 26.2 5.7 51 75-128 205-258 (426)
160 COG1208 GCD1 Nucleoside-diphos 40.3 2E+02 0.0044 23.4 10.2 79 72-157 26-108 (358)
161 TIGR01479 GMP_PMI mannose-1-ph 38.3 1.4E+02 0.0031 25.3 6.8 80 73-157 27-113 (468)
162 cd00505 Glyco_transf_8 Members 37.6 1.8E+02 0.0039 22.0 9.4 40 71-112 3-43 (246)
163 cd02508 ADP_Glucose_PP ADP-glu 37.4 1.6E+02 0.0035 21.3 8.6 80 72-157 23-120 (200)
164 PF04028 DUF374: Domain of unk 36.8 1.1E+02 0.0023 19.2 5.5 47 101-147 11-57 (74)
165 PRK14359 glmU bifunctional N-a 35.9 2.5E+02 0.0053 23.1 8.2 76 72-157 24-102 (430)
166 COG2957 Peptidylarginine deimi 34.5 1.2E+02 0.0026 24.8 5.3 50 69-130 293-342 (346)
167 PLN02248 cellulose synthase-li 33.9 52 0.0011 31.2 3.7 38 120-157 583-629 (1135)
168 COG1349 GlpR Transcriptional r 33.6 92 0.002 24.1 4.6 45 83-129 77-121 (253)
169 TIGR00824 EIIA-man PTS system, 32.6 1.6E+02 0.0034 19.8 7.2 46 81-128 42-90 (116)
170 PF01983 CofC: Guanylyl transf 31.9 1.2E+02 0.0026 23.2 4.8 53 101-157 45-97 (217)
171 PRK14354 glmU bifunctional N-a 31.7 3E+02 0.0065 22.8 8.9 77 72-157 24-102 (458)
172 cd02541 UGPase_prokaryotic Pro 31.2 2.4E+02 0.0051 21.4 9.3 79 72-157 25-128 (267)
173 PF15224 SCRG1: Scrapie-respon 31.0 38 0.00083 21.0 1.6 12 66-77 66-77 (78)
174 PF04123 DUF373: Domain of unk 30.9 1.4E+02 0.0031 24.5 5.4 35 82-119 85-119 (344)
175 PRK14490 putative bifunctional 29.9 3.1E+02 0.0067 22.4 8.2 66 82-157 202-268 (369)
176 PRK10681 DNA-binding transcrip 29.8 1.3E+02 0.0028 23.2 4.9 44 84-129 79-122 (252)
177 PLN02436 cellulose synthase A 29.7 1.2E+02 0.0026 28.9 5.2 38 120-157 530-576 (1094)
178 TIGR03018 pepcterm_TyrKin exop 29.1 1.3E+02 0.0029 22.0 4.7 29 129-157 43-74 (207)
179 PF01793 Glyco_transf_15: Glyc 28.8 2.3E+02 0.005 23.1 6.2 54 65-118 53-106 (328)
180 TIGR01208 rmlA_long glucose-1- 28.5 3.1E+02 0.0067 21.9 9.8 80 72-157 24-107 (353)
181 PRK13368 3-deoxy-manno-octulos 28.2 2.5E+02 0.0054 20.8 8.9 68 82-157 29-98 (238)
182 cd06425 M1P_guanylylT_B_like_N 28.2 2.5E+02 0.0054 20.8 8.4 79 72-157 25-110 (233)
183 PF05060 MGAT2: N-acetylglucos 27.8 3.5E+02 0.0076 22.4 8.1 29 66-95 30-58 (356)
184 TIGR00454 conserved hypothetic 27.8 2.4E+02 0.0052 20.5 8.5 77 72-157 21-98 (183)
185 PF11181 YflT: Heat induced st 27.0 1.5E+02 0.0032 19.4 4.2 32 72-106 2-33 (103)
186 cd02537 GT8_Glycogenin Glycoge 26.7 2.8E+02 0.0062 20.9 7.5 15 143-157 85-99 (240)
187 TIGR01105 galF UTP-glucose-1-p 26.4 3.3E+02 0.0071 21.6 9.2 76 72-154 28-130 (297)
188 COG0489 Mrp ATPases involved i 26.3 1.5E+02 0.0033 23.1 4.7 29 129-157 65-95 (265)
189 PLN02728 2-C-methyl-D-erythrit 26.1 3.1E+02 0.0067 21.2 8.3 71 82-157 54-127 (252)
190 PHA01631 hypothetical protein 25.3 2.5E+02 0.0054 20.7 5.2 55 101-157 19-81 (176)
191 PLN02190 cellulose synthase-li 25.2 1E+02 0.0023 28.0 3.9 38 120-157 250-296 (756)
192 cd06426 NTP_transferase_like_2 24.8 2.8E+02 0.006 20.1 8.6 78 72-157 23-104 (220)
193 TIGR03029 EpsG chain length de 24.3 1.6E+02 0.0035 22.6 4.5 27 131-157 113-141 (274)
194 TIGR02328 conserved hypothetic 23.6 43 0.00093 23.0 1.0 41 50-93 75-116 (120)
195 PF07507 WavE: WavE lipopolysa 22.9 4.1E+02 0.0089 21.5 7.0 74 81-157 20-105 (311)
196 TIGR03380 agmatine_aguA agmati 22.6 1.6E+02 0.0035 24.2 4.4 49 69-129 305-353 (357)
197 COG2121 Uncharacterized protei 22.5 3.6E+02 0.0078 20.6 6.1 55 101-155 69-125 (214)
198 PRK13551 agmatine deiminase; P 22.2 1.7E+02 0.0036 24.2 4.4 49 69-129 308-356 (362)
199 PF04056 Ssl1: Ssl1-like; Int 20.8 3.7E+02 0.008 20.1 5.7 65 89-156 91-162 (193)
200 TIGR01007 eps_fam capsular exo 20.8 2.4E+02 0.0052 20.5 4.7 11 121-131 46-56 (204)
201 PLN02400 cellulose synthase 20.5 1.5E+02 0.0032 28.3 4.0 37 121-157 522-567 (1085)
No 1
>KOG3738|consensus
Probab=99.93 E-value=1.5e-25 Score=179.27 Aligned_cols=148 Identities=63% Similarity=1.007 Sum_probs=143.6
Q ss_pred ccCCcccccccccCCCCCCcccccccchhhhccCCCCCCCCCCCCCccccccCCCCCCcEEEEEEecCCchHHHHHHHHH
Q psy3172 10 RYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVVS 89 (157)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~p~vSiIIp~yn~~~~~l~~~l~s 89 (157)
+-|+.+.|+.+...+..++.|+.+.||...|+.+...|.+|++|++.|....|...+|..||||.++||+.+.|.+++.|
T Consensus 67 k~fd~~~y~~~~~~~~Ged~y~~~~fnq~esd~l~~~r~i~dtRh~qC~~~~y~~dlp~TsviITfHNEARS~LLRTv~S 146 (559)
T KOG3738|consen 67 KTFDVEAYLNGGKWHQGEDPYKANSFNQEESDKLNPTRKIPDTRHPQCRDVDYKVDLPPTSVIITFHNEARSTLLRTVVS 146 (559)
T ss_pred CCCCchhhhcCCCccCCCchhhcCccchhhhhhhCCCCccccccccccccceeecCCCCceEEEEeccHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999889999999999999998899999999
Q ss_pred HHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 90 IINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 90 l~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
++++++.++..|||+|||+|.|.+....+.+.++++++++.++.|+...|+.|+..|++.++.|||+|
T Consensus 147 vlnrsP~~li~EiILVDD~S~Dped~~~L~ri~kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSH 214 (559)
T KOG3738|consen 147 VLNRSPEHLIHEIILVDDFSQDPEDGKLLKRIPKVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSH 214 (559)
T ss_pred HHcCChHHhhheeEEecCCCCChHHHHHHhhhheeeeecccchhhhhhhhccccccccceEEEEEecc
Confidence 99999999999999999999999988888899999999999999999999999999999999999998
No 2
>KOG3737|consensus
Probab=99.90 E-value=7e-24 Score=169.66 Aligned_cols=132 Identities=45% Similarity=0.693 Sum_probs=121.8
Q ss_pred CCCcccccccchhhhccCCCCCCCCCCCCCccccccCCCCCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEE
Q psy3172 26 GQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILV 105 (157)
Q Consensus 26 ~~~~~~~~~~n~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivv 105 (157)
.....+++|||+..||.++++|.++|.|+..|....|+..+|.+||||.++|+.++.|.++++|++..+++.+..|||+|
T Consensus 114 ~~AsekEfGfN~~~SDmISm~R~v~D~R~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlv 193 (603)
T KOG3737|consen 114 IQASEKEFGFNMVASDMISMDRNVNDLRQEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLV 193 (603)
T ss_pred HHHHHHhhCcceeehhhhhcccCccccCHhhccccCCcccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEe
Confidence 34556799999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred eCCCCCchHHHHHh----cC-CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 106 DDFSDDPSDGEELE----RI-EKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 106 ddgS~d~t~~~~~~----~~-~~v~vi~~~~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
||.|+.+.+.+.+. .+ ..|++++++++.|+..||..|++.|+|++++|||||
T Consensus 194 DDfSdKehLkekLDeYv~~fnGlVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAH 250 (603)
T KOG3737|consen 194 DDFSDKEHLKEKLDEYVKLFNGLVKVFRNERREGLIQARSIGAQKATGEVLIFLDAH 250 (603)
T ss_pred ccCCccHHHHHHHHHHHHHhcCEEEEEecchhhhhhhhhccchhhccccEEEEEecc
Confidence 99999987665554 33 468999999999999999999999999999999998
No 3
>KOG3736|consensus
Probab=99.88 E-value=1.6e-23 Score=176.24 Aligned_cols=142 Identities=54% Similarity=0.776 Sum_probs=127.7
Q ss_pred cccccccCCCCCCcccccccchhhhccCCCCCCCCCCCCCcccc-ccCCCCCCcEEEEEEecCCchHHHHHHHHHHHhhC
Q psy3172 16 AYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTR-HALPRDLPATSVIITFHNEARSALLRSVVSIINRT 94 (157)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~n~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~ 94 (157)
...+..+....+.+|++++||+++|+++++.|++||.|+..|.. ..+..++|..||||+++||+++.|.+++.|+++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~N~~~Sd~I~l~Rsl~D~r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rt 169 (578)
T KOG3736|consen 90 VKLPEAEEDLEDEGYEKNAFNALLSDRISLNRSLPDLRHPECKKLKYYSDKLPTTSVIIIFHNEAWSTLLRTVHSVINRT 169 (578)
T ss_pred ccCCcchHHHHHHHhhcccchhhhhhcccccCCCcchhchhhhhccccccccCCCceEEEEecCCCcchhheEEeehccC
Confidence 45556666677788999999999999999999999999999977 55556699999999999999999999999999999
Q ss_pred CCCCccEEEEEeCCCCCch----HHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 95 PAHLLKEIILVDDFSDDPS----DGEELERIEKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 95 ~~~~~~eIivvddgS~d~t----~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
++.+..|||+|||+|+... +++.++....+++++.+++.|+..||..|++.|+|++++|||||
T Consensus 170 p~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsH 236 (578)
T KOG3736|consen 170 PPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSKVRILRTKKREGLIRARLLGASMATGEVLTFLDSH 236 (578)
T ss_pred ChhHeEEEEEeecCcchhhhhhhhHHHHhhhcceeEEeecchhhhHHHHhhhhhhhhchheeeeecc
Confidence 9888889999999999877 45566666679999999999999999999999999999999998
No 4
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.87 E-value=1.2e-21 Score=157.29 Aligned_cols=88 Identities=31% Similarity=0.359 Sum_probs=79.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH---HHHhcCCCEEEEEcCCCCCHHHHHHHH
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG---EELERIEKVSVLRNDKREGLMRSRVKG 142 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~---~~~~~~~~v~vi~~~~n~G~~~a~n~g 142 (157)
.|.||||||+||++ .+|.+||+|+++|+++++ |||||||||+|++.. +.....+++++++. +|.|.+.|+|.|
T Consensus 5 ~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~--EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~-~n~G~~~arN~g 80 (328)
T PRK10073 5 TPKLSIIIPLYNAG-KDFRAFMESLIAQTWTAL--EIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQ-ANAGVSVARNTG 80 (328)
T ss_pred CCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCe--EEEEEeCCCCccHHHHHHHHHhhCCCEEEEEC-CCCChHHHHHHH
Confidence 57899999999999 599999999999999888 999999999998843 33346788999975 699999999999
Q ss_pred HHHcCCCEEEEEcCC
Q psy3172 143 ADAATAPVLTFLDSH 157 (157)
Q Consensus 143 ~~~a~gd~i~flDa~ 157 (157)
++.|+|+||+|+|+|
T Consensus 81 l~~a~g~yi~flD~D 95 (328)
T PRK10073 81 LAVATGKYVAFPDAD 95 (328)
T ss_pred HHhCCCCEEEEECCC
Confidence 999999999999998
No 5
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.86 E-value=6.4e-21 Score=149.99 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=79.8
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCch-HHHHHh--cCCCEEEEEcCCCCCHHHHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPS-DGEELE--RIEKVSVLRNDKREGLMRSRVK 141 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t-~~~~~~--~~~~v~vi~~~~n~G~~~a~n~ 141 (157)
..|.||||||+||++ .+|.+||+|+++|+++++ |||||||||++.+ +.+... ..+++++++.+.|.|.+.|+|.
T Consensus 3 ~~p~VSVIip~yN~~-~~l~~~l~Svl~Qt~~~~--EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~ 79 (279)
T PRK10018 3 DNPLISIYMPTWNRQ-QLAIRAIKSVLRQDYSNW--EMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQ 79 (279)
T ss_pred CCCEEEEEEEeCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHH
Confidence 368999999999999 499999999999999988 9999999999643 333333 4578999999999999999999
Q ss_pred HHHHcCCCEEEEEcCC
Q psy3172 142 GADAATAPVLTFLDSH 157 (157)
Q Consensus 142 g~~~a~gd~i~flDa~ 157 (157)
|++.|+|+||+|||+|
T Consensus 80 gi~~a~g~~I~~lDaD 95 (279)
T PRK10018 80 AIMLAQGEYITGIDDD 95 (279)
T ss_pred HHHHcCCCEEEEECCC
Confidence 9999999999999997
No 6
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.82 E-value=7.9e-20 Score=144.35 Aligned_cols=87 Identities=66% Similarity=0.890 Sum_probs=77.3
Q ss_pred EEEEEecCCc-hHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHH-----HhcCCCEEEEEcCCCCCHHHHHHHHH
Q psy3172 70 SVIITFHNEA-RSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEE-----LERIEKVSVLRNDKREGLMRSRVKGA 143 (157)
Q Consensus 70 SiIIp~yn~~-~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~-----~~~~~~v~vi~~~~n~G~~~a~n~g~ 143 (157)
|||||+||+. . .|.+||+|+++|+++....|||||||||+|++.... ....+.+++++.++|.|++.|+|.|+
T Consensus 1 SIIIp~~N~~~~-~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~ 79 (299)
T cd02510 1 SVIIIFHNEALS-TLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGA 79 (299)
T ss_pred CEEEEEecCcHH-HHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHH
Confidence 7999999998 6 999999999999976544499999999999986543 23457899999999999999999999
Q ss_pred HHcCCCEEEEEcCC
Q psy3172 144 DAATAPVLTFLDSH 157 (157)
Q Consensus 144 ~~a~gd~i~flDa~ 157 (157)
++|+|+||+|||+|
T Consensus 80 ~~A~gd~i~fLD~D 93 (299)
T cd02510 80 RAATGDVLVFLDSH 93 (299)
T ss_pred HHccCCEEEEEeCC
Confidence 99999999999998
No 7
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.81 E-value=1.9e-19 Score=137.85 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=75.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc-C---CCEEEEEcCCCCCHHHHHHHH
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER-I---EKVSVLRNDKREGLMRSRVKG 142 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~-~---~~v~vi~~~~n~G~~~a~n~g 142 (157)
|++|||||+||++ ..|.++|+|++.|+|++...|||||||+|+|.|.+...+. . .++.++....+.|++.|+|.|
T Consensus 1 p~vsIiIp~~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g 79 (241)
T cd06427 1 PVYTILVPLYKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYA 79 (241)
T ss_pred CeEEEEEecCCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHH
Confidence 6799999999999 5999999999999987633499999999999986433221 1 245555556778999999999
Q ss_pred HHHcCCCEEEEEcCC
Q psy3172 143 ADAATAPVLTFLDSH 157 (157)
Q Consensus 143 ~~~a~gd~i~flDa~ 157 (157)
++.++|+||+|+|||
T Consensus 80 ~~~a~gd~i~~~DaD 94 (241)
T cd06427 80 LAFARGEYVVIYDAE 94 (241)
T ss_pred HHhcCCCEEEEEcCC
Confidence 999999999999998
No 8
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.81 E-value=2.8e-19 Score=132.43 Aligned_cols=88 Identities=22% Similarity=0.345 Sum_probs=78.6
Q ss_pred CcEEEEEEecCCc-hHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHH----hcCCCEEEEEcCCCCCHHHHHHH
Q psy3172 67 PATSVIITFHNEA-RSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEEL----ERIEKVSVLRNDKREGLMRSRVK 141 (157)
Q Consensus 67 p~vSiIIp~yn~~-~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~----~~~~~v~vi~~~~n~G~~~a~n~ 141 (157)
|++|||||+||+. . .|.+||+|+++|+++.+ |||||||||+|++..... ...+++++++.+++.|.+.|+|.
T Consensus 1 p~vsiii~~~n~~~~-~l~~~l~sl~~q~~~~~--eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 77 (202)
T cd04184 1 PLISIVMPVYNTPEK-YLREAIESVRAQTYPNW--ELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNS 77 (202)
T ss_pred CeEEEEEecccCcHH-HHHHHHHHHHhCcCCCe--EEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHH
Confidence 5799999999998 6 99999999999999887 999999999997654332 34578999999999999999999
Q ss_pred HHHHcCCCEEEEEcCC
Q psy3172 142 GADAATAPVLTFLDSH 157 (157)
Q Consensus 142 g~~~a~gd~i~flDa~ 157 (157)
|++.++|+|++|+|+|
T Consensus 78 g~~~a~~d~i~~ld~D 93 (202)
T cd04184 78 ALELATGEFVALLDHD 93 (202)
T ss_pred HHHhhcCCEEEEECCC
Confidence 9999999999999987
No 9
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.80 E-value=5.3e-19 Score=136.91 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=72.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhh---CCCCCccEEEEEeCCCCCchHHHHHh--cCCCEEEEEcCCCCCHHHHHHH
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINR---TPAHLLKEIILVDDFSDDPSDGEELE--RIEKVSVLRNDKREGLMRSRVK 141 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q---~~~~~~~eIivvddgS~d~t~~~~~~--~~~~v~vi~~~~n~G~~~a~n~ 141 (157)
|+||||||+||++ ..|.+||+|+..| ++.++ |||||||||+|+|.+.... ...+++++.. ++.|.+.|+|.
T Consensus 1 ~~vSVIi~~yN~~-~~l~~~l~sl~~~~~~~~~~~--EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~-~~~G~~~A~N~ 76 (248)
T PRK10063 1 MLLSVITVAFRNL-EGIVKTHASLRHLAQDPGISF--EWIVVDGGSNDGTREFLENLNGIFNLRFVSE-PDNGIYDAMNK 76 (248)
T ss_pred CeEEEEEEeCCCH-HHHHHHHHHHHHHHhCCCCCE--EEEEEECcCcccHHHHHHHhcccCCEEEEEC-CCCCHHHHHHH
Confidence 5799999999999 5999999999864 35667 9999999999998643222 1235888876 47799999999
Q ss_pred HHHHcCCCEEEEEcCC
Q psy3172 142 GADAATAPVLTFLDSH 157 (157)
Q Consensus 142 g~~~a~gd~i~flDa~ 157 (157)
|++.|+|+||+|||+|
T Consensus 77 Gi~~a~g~~v~~ld~D 92 (248)
T PRK10063 77 GIAMAQGRFALFLNSG 92 (248)
T ss_pred HHHHcCCCEEEEEeCC
Confidence 9999999999999986
No 10
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.79 E-value=1.3e-18 Score=144.65 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=81.4
Q ss_pred CCCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHH---HHhcCCCEEEEEcCCCCCHHHHHH
Q psy3172 64 RDLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGE---ELERIEKVSVLRNDKREGLMRSRV 140 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~---~~~~~~~v~vi~~~~n~G~~~a~n 140 (157)
...|++|||||+||++ +.|.+||+|+.+|+||....||+||||||+|+|.+. ..+..++++++..+++.|++.|+|
T Consensus 46 ~~~P~vsVIIP~yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN 124 (439)
T TIGR03111 46 GKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALN 124 (439)
T ss_pred CCCCCEEEEEEeCCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHH
Confidence 3468999999999999 599999999999999875459999999999998542 234567888877778899999999
Q ss_pred HHHHHcCCCEEEEEcCC
Q psy3172 141 KGADAATAPVLTFLDSH 157 (157)
Q Consensus 141 ~g~~~a~gd~i~flDa~ 157 (157)
.|++.++|++++++|||
T Consensus 125 ~gl~~s~g~~v~~~DaD 141 (439)
T TIGR03111 125 AAIYNSIGKYIIHIDSD 141 (439)
T ss_pred HHHHHccCCEEEEECCC
Confidence 99999999999999998
No 11
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.79 E-value=9.7e-19 Score=132.89 Aligned_cols=89 Identities=20% Similarity=0.225 Sum_probs=73.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHh-------cCCCEEEEEcCCCCC-HHHH
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELE-------RIEKVSVLRNDKREG-LMRS 138 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~-------~~~~v~vi~~~~n~G-~~~a 138 (157)
|+||||||+||++ ..|.+||+|+++|+++....||||+|| |+|+|...... ..++++++....+.| ++.|
T Consensus 1 p~vSViIp~yNe~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a 78 (232)
T cd06437 1 PMVTVQLPVFNEK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGA 78 (232)
T ss_pred CceEEEEecCCcH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHH
Confidence 5799999999999 599999999999998764459999998 89988543222 245677777666667 6889
Q ss_pred HHHHHHHcCCCEEEEEcCC
Q psy3172 139 RVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a~gd~i~flDa~ 157 (157)
+|.|++.++|+||+|+|||
T Consensus 79 ~n~g~~~a~~~~i~~~DaD 97 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDAD 97 (232)
T ss_pred HHHHHHhCCCCEEEEEcCC
Confidence 9999999999999999998
No 12
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=8.6e-19 Score=125.76 Aligned_cols=89 Identities=34% Similarity=0.427 Sum_probs=78.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc---CCCEEEEEcCCCCCHHHHHHHH
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER---IEKVSVLRNDKREGLMRSRVKG 142 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~---~~~v~vi~~~~n~G~~~a~n~g 142 (157)
+|++|||||+||++ .+|.++|.|+++|++.++ |||||||||+|+|....... ...+......+|.|.+.|+|.|
T Consensus 2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~~~--eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (291)
T COG0463 2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAG 78 (291)
T ss_pred CccEEEEEeccchh-hhHHHHHHHHHhhhhcce--EEEEEeCCCCCChHHHHHHHhhhcceEEEeecccCCChHHHHHhh
Confidence 57899999999999 599999999999998887 99999999999986433332 2356677778999999999999
Q ss_pred HHHcCCCEEEEEcCC
Q psy3172 143 ADAATAPVLTFLDSH 157 (157)
Q Consensus 143 ~~~a~gd~i~flDa~ 157 (157)
+..+.|++++|+|+|
T Consensus 79 ~~~~~~~~~~~~d~d 93 (291)
T COG0463 79 LEYARGDYIVFLDAD 93 (291)
T ss_pred HHhccCCEEEEEccC
Confidence 999999999999997
No 13
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.79 E-value=1.7e-18 Score=128.78 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=72.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH---HHHhcCC--CEEEEEcCCCCC---HHHH
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG---EELERIE--KVSVLRNDKREG---LMRS 138 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~---~~~~~~~--~v~vi~~~~n~G---~~~a 138 (157)
|+||||||+||++. .|.++|+|+++|+++++ |||||||+|+|++.+ .....++ +++++....+.| .+.+
T Consensus 1 p~vsviip~~n~~~-~l~~~L~sl~~q~~~~~--eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 77 (196)
T cd02520 1 PGVSILKPLCGVDP-NLYENLESFFQQDYPKY--EILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNN 77 (196)
T ss_pred CCeEEEEecCCCCc-cHHHHHHHHHhccCCCe--EEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHH
Confidence 67999999999995 89999999999999887 999999999999853 2223455 456776666655 4457
Q ss_pred HHHHHHHcCCCEEEEEcCC
Q psy3172 139 RVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a~gd~i~flDa~ 157 (157)
+|.|++.++|++++|+|+|
T Consensus 78 ~n~g~~~a~~d~i~~~D~D 96 (196)
T cd02520 78 LIKGYEEARYDILVISDSD 96 (196)
T ss_pred HHHHHHhCCCCEEEEECCC
Confidence 8899999999999999997
No 14
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.79 E-value=9.1e-19 Score=124.40 Aligned_cols=85 Identities=33% Similarity=0.430 Sum_probs=71.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHHHc
Q psy3172 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELE---RIEKVSVLRNDKREGLMRSRVKGADAA 146 (157)
Q Consensus 70 SiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~---~~~~v~vi~~~~n~G~~~a~n~g~~~a 146 (157)
|||||+||+. ..|.+||.|++.|+.+.+ |||||||||++.+...... ...++++++.+.|.|.+.++|.|++.|
T Consensus 1 Svvip~~n~~-~~l~~~l~sl~~q~~~~~--eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a 77 (169)
T PF00535_consen 1 SVVIPTYNEA-EYLERTLESLLKQTDPDF--EIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHA 77 (169)
T ss_dssp EEEEEESS-T-TTHHHHHHHHHHHSGCEE--EEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH-
T ss_pred CEEEEeeCCH-HHHHHHHHHHhhccCCCE--EEEEecccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999998 599999999999977667 9999999998887432222 367999999999999999999999999
Q ss_pred CCCEEEEEcCC
Q psy3172 147 TAPVLTFLDSH 157 (157)
Q Consensus 147 ~gd~i~flDa~ 157 (157)
+++|++|+|+|
T Consensus 78 ~~~~i~~ld~D 88 (169)
T PF00535_consen 78 KGEYILFLDDD 88 (169)
T ss_dssp -SSEEEEEETT
T ss_pred ceeEEEEeCCC
Confidence 99999999997
No 15
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.78 E-value=2.7e-18 Score=141.34 Aligned_cols=90 Identities=20% Similarity=0.335 Sum_probs=81.2
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH---HHHhcCCCEEEEEcCCCCCHHHHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG---EELERIEKVSVLRNDKREGLMRSRVK 141 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~---~~~~~~~~v~vi~~~~n~G~~~a~n~ 141 (157)
..|++||+||+|||+ ..+.+|++|+++|+|+++ ||+||||||+|++.+ +..++.+++++++.++|.|++.|+|.
T Consensus 52 ~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~--eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~ 128 (420)
T PRK11204 52 EYPGVSILVPCYNEG-ENVEETISHLLALRYPNY--EVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNT 128 (420)
T ss_pred CCCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCe--EEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHH
Confidence 468899999999998 599999999999999987 999999999999853 23346778999998899999999999
Q ss_pred HHHHcCCCEEEEEcCC
Q psy3172 142 GADAATAPVLTFLDSH 157 (157)
Q Consensus 142 g~~~a~gd~i~flDa~ 157 (157)
|++.+++|+++++|||
T Consensus 129 g~~~a~~d~i~~lDaD 144 (420)
T PRK11204 129 GAAAARSEYLVCIDGD 144 (420)
T ss_pred HHHHcCCCEEEEECCC
Confidence 9999999999999998
No 16
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.78 E-value=2.7e-18 Score=142.77 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=80.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH---HHHhcCCCEEEEEcCCCCCHHHHHHHH
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG---EELERIEKVSVLRNDKREGLMRSRVKG 142 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~---~~~~~~~~v~vi~~~~n~G~~~a~n~g 142 (157)
.|.||||||+|||+ ..+.+||+|+++|+|+++ ||+||||||+|++.+ +..+..+++++++.++|.|++.|+|.|
T Consensus 74 ~p~vsViIP~yNE~-~~i~~~l~sll~q~yp~~--eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~g 150 (444)
T PRK14583 74 HPLVSILVPCFNEG-LNARETIHAALAQTYTNI--EVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMG 150 (444)
T ss_pred CCcEEEEEEeCCCH-HHHHHHHHHHHcCCCCCe--EEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHH
Confidence 58899999999999 499999999999999987 999999999999854 233457789999988999999999999
Q ss_pred HHHcCCCEEEEEcCC
Q psy3172 143 ADAATAPVLTFLDSH 157 (157)
Q Consensus 143 ~~~a~gd~i~flDa~ 157 (157)
++.++||+++++|||
T Consensus 151 l~~a~~d~iv~lDAD 165 (444)
T PRK14583 151 AAAARSEYLVCIDGD 165 (444)
T ss_pred HHhCCCCEEEEECCC
Confidence 999999999999998
No 17
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.78 E-value=1.9e-18 Score=128.00 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=72.3
Q ss_pred EEEEEecCCch-HHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHH---HhcCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy3172 70 SVIITFHNEAR-SALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEE---LERIEKVSVLRNDKREGLMRSRVKGADA 145 (157)
Q Consensus 70 SiIIp~yn~~~-~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~---~~~~~~v~vi~~~~n~G~~~a~n~g~~~ 145 (157)
|||||+||++. .+|.+||+|++.|+++++ |||||||||+++...+. +.....++++..++|.|.+.|+|.|++.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~--eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~ 78 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPD--EVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKH 78 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCc--EEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHh
Confidence 69999999862 399999999999998877 99999999955433232 2222349999999999999999999999
Q ss_pred cCCCEEEEEcCC
Q psy3172 146 ATAPVLTFLDSH 157 (157)
Q Consensus 146 a~gd~i~flDa~ 157 (157)
++|+|++|+|+|
T Consensus 79 a~gd~i~~lD~D 90 (201)
T cd04195 79 CTYDWVARMDTD 90 (201)
T ss_pred cCCCEEEEeCCc
Confidence 999999999997
No 18
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.77 E-value=2.9e-18 Score=127.57 Aligned_cols=85 Identities=25% Similarity=0.236 Sum_probs=74.1
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHH---HHhcC-CCEEEEEcCCCCCHHHHHHHHHHH
Q psy3172 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGE---ELERI-EKVSVLRNDKREGLMRSRVKGADA 145 (157)
Q Consensus 70 SiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~---~~~~~-~~v~vi~~~~n~G~~~a~n~g~~~ 145 (157)
|||||+||++ ..|.+||+|+++|+++.+ |||||||||+|+|... ..... ..+.++..+.|.|.+.++|.|+..
T Consensus 1 sIvIp~yn~~-~~l~~~l~sl~~q~~~~~--eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~ 77 (214)
T cd04196 1 AVLMATYNGE-KYLREQLDSILAQTYKND--ELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQA 77 (214)
T ss_pred CEEEEecCcH-HHHHHHHHHHHhCcCCCe--EEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHh
Confidence 6899999999 599999999999998877 9999999999987432 22233 357788888999999999999999
Q ss_pred cCCCEEEEEcCC
Q psy3172 146 ATAPVLTFLDSH 157 (157)
Q Consensus 146 a~gd~i~flDa~ 157 (157)
++|+|++|+|+|
T Consensus 78 ~~g~~v~~ld~D 89 (214)
T cd04196 78 ADGDYVFFCDQD 89 (214)
T ss_pred CCCCEEEEECCC
Confidence 999999999997
No 19
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.77 E-value=4.1e-18 Score=139.35 Aligned_cols=91 Identities=25% Similarity=0.362 Sum_probs=76.4
Q ss_pred CCCCcEEEEEEecCCchHHHHHHHHHHHhhCCC-CCccEEEEEeCCCCCchHHH---HHhcCC---CEEEEEcC----CC
Q psy3172 64 RDLPATSVIITFHNEARSALLRSVVSIINRTPA-HLLKEIILVDDFSDDPSDGE---ELERIE---KVSVLRND----KR 132 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~-~~~~eIivvddgS~d~t~~~---~~~~~~---~v~vi~~~----~n 132 (157)
...|+||||||+||++ ..|.+||+|+++|+|+ .+ |||||||+|+|+|.+. ..+.++ ++++++.+ ..
T Consensus 37 ~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~~~--eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 37 EAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPGKL--HVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCCCEEEEEecCCcH-hHHHHHHHHHHhCCCCCce--EEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence 4578999999999999 5999999999999997 46 9999999999998532 223344 78888743 23
Q ss_pred CCHHHHHHHHHHHcC-----CCEEEEEcCC
Q psy3172 133 EGLMRSRVKGADAAT-----APVLTFLDSH 157 (157)
Q Consensus 133 ~G~~~a~n~g~~~a~-----gd~i~flDa~ 157 (157)
.|++.|+|.|++.|+ ||+++|+|||
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD 143 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDAD 143 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCC
Confidence 588999999999999 9999999998
No 20
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.77 E-value=3e-18 Score=128.76 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=74.7
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCC-CCCccEEEEEeCCCCCchHH---HHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTP-AHLLKEIILVDDFSDDPSDG---EELERIEKVSVLRNDKREGLMRSRVKGADAA 146 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~-~~~~~eIivvddgS~d~t~~---~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a 146 (157)
||||+||++ ..|.++|+|+..|++ ..+ |||||||||+|++.. ...+..+.+++++.+.|.|++.|+|.|++.|
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~~--eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a 77 (224)
T cd06442 1 IIIPTYNER-ENIPELIERLDAALKGIDY--EIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAA 77 (224)
T ss_pred CeEeccchh-hhHHHHHHHHHHhhcCCCe--EEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHc
Confidence 699999999 599999999999997 566 999999999998843 2334567889999999999999999999999
Q ss_pred CCCEEEEEcCC
Q psy3172 147 TAPVLTFLDSH 157 (157)
Q Consensus 147 ~gd~i~flDa~ 157 (157)
+|++|+|||+|
T Consensus 78 ~gd~i~~lD~D 88 (224)
T cd06442 78 RGDVIVVMDAD 88 (224)
T ss_pred CCCEEEEEECC
Confidence 99999999997
No 21
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.77 E-value=3.4e-18 Score=137.61 Aligned_cols=93 Identities=19% Similarity=0.161 Sum_probs=76.5
Q ss_pred CCCCcEEEEEEecCCchHHHHHHHHHHHhhCC------CCCccEEEEEeCCCCCchHHHHHh---cC----CCEEEEEcC
Q psy3172 64 RDLPATSVIITFHNEARSALLRSVVSIINRTP------AHLLKEIILVDDFSDDPSDGEELE---RI----EKVSVLRND 130 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~------~~~~~eIivvddgS~d~t~~~~~~---~~----~~v~vi~~~ 130 (157)
...|.+|||||+||++ ..|.++|+++.++.. +....|||||||||+|.|.+...+ .. .++++++.+
T Consensus 67 ~~~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 3467899999999999 499999999887532 122349999999999998643222 21 359999999
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 131 KREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 131 ~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
+|.|++.|+|.|+++|+|++++++|||
T Consensus 146 ~N~G~~~A~~~Gi~~a~gd~I~~~DaD 172 (333)
T PTZ00260 146 RNKGKGGAVRIGMLASRGKYILMVDAD 172 (333)
T ss_pred CCCChHHHHHHHHHHccCCEEEEEeCC
Confidence 999999999999999999999999998
No 22
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.77 E-value=6.1e-18 Score=129.55 Aligned_cols=91 Identities=24% Similarity=0.275 Sum_probs=78.6
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCC--CEEEEEcCCCCCHHHHHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIE--KVSVLRNDKREGLMRSRVKG 142 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~--~v~vi~~~~n~G~~~a~n~g 142 (157)
.+|++|||||+||++ ..|.+||+|++.|+++....||||+||||+|.+..... ... +++++..+++.|.+.|+|.|
T Consensus 27 ~~~~isVvip~~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~v~~i~~~~~~g~~~a~n~g 104 (251)
T cd06439 27 YLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR-EYADKGVKLLRFPERRGKAAALNRA 104 (251)
T ss_pred CCCEEEEEEecCCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH-HHhhCcEEEEEcCCCCChHHHHHHH
Confidence 478899999999999 59999999999999876333999999999998854222 221 58899999999999999999
Q ss_pred HHHcCCCEEEEEcCC
Q psy3172 143 ADAATAPVLTFLDSH 157 (157)
Q Consensus 143 ~~~a~gd~i~flDa~ 157 (157)
++.++|||++|+|+|
T Consensus 105 i~~a~~d~i~~lD~D 119 (251)
T cd06439 105 LALATGEIVVFTDAN 119 (251)
T ss_pred HHHcCCCEEEEEccc
Confidence 999999999999998
No 23
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.76 E-value=3.7e-18 Score=125.30 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=72.0
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Q psy3172 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATAP 149 (157)
Q Consensus 70 SiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~gd 149 (157)
|||||+||++ ..|.+||.|+++|+++++ |||||||||+|.+.+...+....+..+...++.|.+.|+|.|++.|+++
T Consensus 1 sivi~~~n~~-~~l~~~l~sl~~q~~~~~--evivvDd~s~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~~~ 77 (202)
T cd06433 1 SIITPTYNQA-ETLEETIDSVLSQTYPNI--EYIVIDGGSTDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALATGD 77 (202)
T ss_pred CEEEeccchH-HHHHHHHHHHHhCCCCCc--eEEEEeCCCCccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 6899999999 599999999999999887 9999999999988543322222234455678999999999999999999
Q ss_pred EEEEEcCC
Q psy3172 150 VLTFLDSH 157 (157)
Q Consensus 150 ~i~flDa~ 157 (157)
|++|+|+|
T Consensus 78 ~v~~ld~D 85 (202)
T cd06433 78 IIGFLNSD 85 (202)
T ss_pred EEEEeCCC
Confidence 99999997
No 24
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.76 E-value=1.2e-17 Score=128.16 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=75.3
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhC--CCCCccEEEEEeCCCCCchHHHHHh---c--CCCEEEEEcCCCCCHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRT--PAHLLKEIILVDDFSDDPSDGEELE---R--IEKVSVLRNDKREGLMR 137 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~--~~~~~~eIivvddgS~d~t~~~~~~---~--~~~v~vi~~~~n~G~~~ 137 (157)
.+|+||||||+||++ ..|..++.++.++. +..+ |||||||||+|+|.+...+ . ...++++..++|.|++.
T Consensus 7 ~~~~vsVvIp~yne~-~~l~~~l~~l~~~~~~~~~~--eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~ 83 (243)
T PLN02726 7 GAMKYSIIVPTYNER-LNIALIVYLIFKALQDVKDF--EIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGT 83 (243)
T ss_pred CCceEEEEEccCCch-hhHHHHHHHHHHHhccCCCe--EEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHH
Confidence 367899999999999 49999999887654 3355 9999999999998543222 2 24688888889999999
Q ss_pred HHHHHHHHcCCCEEEEEcCC
Q psy3172 138 SRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 138 a~n~g~~~a~gd~i~flDa~ 157 (157)
|+|.|++.|+|+|++|+|+|
T Consensus 84 a~n~g~~~a~g~~i~~lD~D 103 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDAD 103 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCC
Confidence 99999999999999999998
No 25
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.76 E-value=7.1e-18 Score=127.10 Aligned_cols=84 Identities=24% Similarity=0.288 Sum_probs=69.7
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCC-CCccEEEEEeCCCCCchHHHH---Hhc--CCCEEEEE----cCCCCCHHHHHH
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPA-HLLKEIILVDDFSDDPSDGEE---LER--IEKVSVLR----NDKREGLMRSRV 140 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~-~~~~eIivvddgS~d~t~~~~---~~~--~~~v~vi~----~~~n~G~~~a~n 140 (157)
||||+||++ .+|.+||+|++.|+++ .+ |||||||||+|+|.... ..+ ..+++++. .+.+.|.+.|+|
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~~--eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N 77 (219)
T cd06913 1 IILPVHNGE-QWLDECLESVLQQDFEGTL--ELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKN 77 (219)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCCCCCE--EEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHH
Confidence 699999998 5999999999999987 46 99999999999884322 222 34566664 345689999999
Q ss_pred HHHHHcCCCEEEEEcCC
Q psy3172 141 KGADAATAPVLTFLDSH 157 (157)
Q Consensus 141 ~g~~~a~gd~i~flDa~ 157 (157)
.|++.|+|+|++|||+|
T Consensus 78 ~g~~~a~gd~i~~lD~D 94 (219)
T cd06913 78 QAIAQSSGRYLCFLDSD 94 (219)
T ss_pred HHHHhcCCCEEEEECCC
Confidence 99999999999999997
No 26
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.75 E-value=1.1e-17 Score=126.27 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=72.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHh--cCCCEEEEEcCCCCC-HHHHHHHHH
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELE--RIEKVSVLRNDKREG-LMRSRVKGA 143 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~--~~~~v~vi~~~~n~G-~~~a~n~g~ 143 (157)
|+||||||+||+....|++||+|++.|++++...|||||||||+|.+...... ....++++..+.+.| .+.++|.|+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 80 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNNAL 80 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHHHH
Confidence 67999999999864489999999999999882229999999999987532222 222456666665655 677899999
Q ss_pred HHcCCCEEEEEcCC
Q psy3172 144 DAATAPVLTFLDSH 157 (157)
Q Consensus 144 ~~a~gd~i~flDa~ 157 (157)
+.++|+|++|+|+|
T Consensus 81 ~~a~~d~i~~lD~D 94 (234)
T cd06421 81 AHTTGDFVAILDAD 94 (234)
T ss_pred HhCCCCEEEEEccc
Confidence 99999999999997
No 27
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.74 E-value=2.2e-17 Score=132.49 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=73.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHH---hhCCCCCccEEEEEeCCCCCchHHHHH---hc-CCCEEEEEcCCCCCHHHH
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSII---NRTPAHLLKEIILVDDFSDDPSDGEEL---ER-IEKVSVLRNDKREGLMRS 138 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~---~q~~~~~~~eIivvddgS~d~t~~~~~---~~-~~~v~vi~~~~n~G~~~a 138 (157)
++++|||||+|||+. .|.++++++. .|....+ |||||||||+|.|.+... +. ..+++.+..++|.|++.|
T Consensus 5 ~~~vSVVIP~yNE~~-~i~~~l~~l~~~~~~~~~~~--EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A 81 (325)
T PRK10714 5 IKKVSVVIPVYNEQE-SLPELIRRTTAACESLGKEY--EILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSA 81 (325)
T ss_pred CCeEEEEEcccCchh-hHHHHHHHHHHHHHhCCCCE--EEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHH
Confidence 467999999999994 8888888764 4555556 999999999999854332 22 356777777899999999
Q ss_pred HHHHHHHcCCCEEEEEcCC
Q psy3172 139 RVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a~gd~i~flDa~ 157 (157)
+|.|+++|+||+++++|||
T Consensus 82 ~~~G~~~A~gd~vv~~DaD 100 (325)
T PRK10714 82 IMAGFSHVTGDLIITLDAD 100 (325)
T ss_pred HHHHHHhCCCCEEEEECCC
Confidence 9999999999999999998
No 28
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.73 E-value=1.5e-17 Score=124.65 Aligned_cols=84 Identities=26% Similarity=0.247 Sum_probs=72.2
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCC----CCCccEEEEEeCCCCCchHHHH---HhcCCC-EEEEEcCCCCCHHHHHHHH
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTP----AHLLKEIILVDDFSDDPSDGEE---LERIEK-VSVLRNDKREGLMRSRVKG 142 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~----~~~~~eIivvddgS~d~t~~~~---~~~~~~-v~vi~~~~n~G~~~a~n~g 142 (157)
||||+||++ ..|.+||+++++|++ ..+ |||||||||+|.+.... .+..+. +++++.+.|.|++.|+|.|
T Consensus 1 iiip~yN~~-~~l~~~l~~l~~~~~~~~~~~~--eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g 77 (211)
T cd04188 1 VVIPAYNEE-KRLPPTLEEAVEYLEERPSFSY--EIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAG 77 (211)
T ss_pred CEEcccChH-HHHHHHHHHHHHHHhccCCCCE--EEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHH
Confidence 699999999 599999999999864 456 99999999999985322 223444 5899999999999999999
Q ss_pred HHHcCCCEEEEEcCC
Q psy3172 143 ADAATAPVLTFLDSH 157 (157)
Q Consensus 143 ~~~a~gd~i~flDa~ 157 (157)
++.|+|+||+|+|+|
T Consensus 78 ~~~a~gd~i~~ld~D 92 (211)
T cd04188 78 MLAARGDYILFADAD 92 (211)
T ss_pred HHHhcCCEEEEEeCC
Confidence 999999999999997
No 29
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.73 E-value=2.7e-17 Score=125.37 Aligned_cols=81 Identities=26% Similarity=0.211 Sum_probs=71.2
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 68 ATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 68 ~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
++|||||+||++ ..|.+||+|+..|+. |||||||||+|+|.+.. +..++++++. .+.|.+.++|.|+..|+
T Consensus 1 ~isvii~~~Ne~-~~l~~~l~sl~~~~~-----eiivvD~gStD~t~~i~--~~~~~~v~~~-~~~g~~~~~n~~~~~a~ 71 (229)
T cd02511 1 TLSVVIITKNEE-RNIERCLESVKWAVD-----EIIVVDSGSTDRTVEIA--KEYGAKVYQR-WWDGFGAQRNFALELAT 71 (229)
T ss_pred CEEEEEEeCCcH-HHHHHHHHHHhcccC-----EEEEEeCCCCccHHHHH--HHcCCEEEEC-CCCChHHHHHHHHHhCC
Confidence 489999999999 599999999988753 99999999999985332 2456788877 88999999999999999
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
++||++||||
T Consensus 72 ~d~vl~lDaD 81 (229)
T cd02511 72 NDWVLSLDAD 81 (229)
T ss_pred CCEEEEEeCC
Confidence 9999999998
No 30
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.72 E-value=7.7e-17 Score=131.36 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=73.7
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH---HHHhcCCC--EEEEEcCCCCC---HHH
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG---EELERIEK--VSVLRNDKREG---LMR 137 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~---~~~~~~~~--v~vi~~~~n~G---~~~ 137 (157)
.|+||||||+||++. .|.+||+|+++|+|+++ ||||+||+|+|.+.+ +..+++++ ++++..+.+.| +..
T Consensus 40 ~p~VSViiP~~nee~-~l~~~L~Sl~~q~Yp~~--EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~ 116 (373)
T TIGR03472 40 WPPVSVLKPLHGDEP-ELYENLASFCRQDYPGF--QMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVS 116 (373)
T ss_pred CCCeEEEEECCCCCh-hHHHHHHHHHhcCCCCe--EEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHH
Confidence 688999999999994 99999999999999998 999999999998743 23345554 77777666555 455
Q ss_pred HHHHHHHHcCCCEEEEEcCC
Q psy3172 138 SRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 138 a~n~g~~~a~gd~i~flDa~ 157 (157)
+.+.+++.|+||+++|+|||
T Consensus 117 ~l~~~~~~a~ge~i~~~DaD 136 (373)
T TIGR03472 117 NLINMLPHARHDILVIADSD 136 (373)
T ss_pred HHHHHHHhccCCEEEEECCC
Confidence 66668899999999999998
No 31
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.72 E-value=2.6e-17 Score=131.05 Aligned_cols=91 Identities=22% Similarity=0.231 Sum_probs=72.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCC----EEEE-EcCCCCCHHHHHH
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEK----VSVL-RNDKREGLMRSRV 140 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~----v~vi-~~~~n~G~~~a~n 140 (157)
.|++|||||+||++ ..|.++|.++.+|.......|||||||||+|.|.+...+.... .+++ ..+.|.|++.|+|
T Consensus 30 ~~~vSVVIPayNee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~~ 108 (306)
T PRK13915 30 GRTVSVVLPALNEE-ETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEALW 108 (306)
T ss_pred CCCEEEEEecCCcH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHHH
Confidence 57899999999999 5999999999998752223499999999999986443332211 1111 1367899999999
Q ss_pred HHHHHcCCCEEEEEcCC
Q psy3172 141 KGADAATAPVLTFLDSH 157 (157)
Q Consensus 141 ~g~~~a~gd~i~flDa~ 157 (157)
.|+..++|++++|+|||
T Consensus 109 ~g~~~a~gd~vv~lDaD 125 (306)
T PRK13915 109 RSLAATTGDIVVFVDAD 125 (306)
T ss_pred HHHHhcCCCEEEEEeCc
Confidence 99999999999999998
No 32
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.72 E-value=5.3e-17 Score=123.26 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=72.4
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH----HHHhc-CCCEEEEEcCCCCC-HHHHHHHHH
Q psy3172 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG----EELER-IEKVSVLRNDKREG-LMRSRVKGA 143 (157)
Q Consensus 70 SiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~----~~~~~-~~~v~vi~~~~n~G-~~~a~n~g~ 143 (157)
|||||+||++...|.+||+|+..|+++++ |||||||+|+|++.. +...+ ..+++++....+.| .+.|+|.|+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~--eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~ 78 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNF--EVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYAL 78 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCc--EEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHH
Confidence 79999999974499999999999999888 999999999999752 22223 34788888777778 489999999
Q ss_pred HHcC--CCEEEEEcCC
Q psy3172 144 DAAT--APVLTFLDSH 157 (157)
Q Consensus 144 ~~a~--gd~i~flDa~ 157 (157)
+.+. +|+|+|+|+|
T Consensus 79 ~~a~~~~d~i~~lD~D 94 (236)
T cd06435 79 ERTAPDAEIIAVIDAD 94 (236)
T ss_pred HhcCCCCCEEEEEcCC
Confidence 9986 6999999998
No 33
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.72 E-value=4.8e-17 Score=115.65 Aligned_cols=84 Identities=26% Similarity=0.330 Sum_probs=73.2
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHc
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAA 146 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a 146 (157)
||||+||++ ..|.+||.|+++|+++.+ ||+||||||++.+........ ..+.++...++.|++.++|.|++.+
T Consensus 1 Viip~~n~~-~~l~~~l~sl~~q~~~~~--~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~ 77 (180)
T cd06423 1 IIVPAYNEE-AVIERTIESLLALDYPKL--EVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA 77 (180)
T ss_pred CeecccChH-HHHHHHHHHHHhCCCCce--EEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc
Confidence 689999999 599999999999998777 999999999998864333322 3467778889999999999999999
Q ss_pred CCCEEEEEcCC
Q psy3172 147 TAPVLTFLDSH 157 (157)
Q Consensus 147 ~gd~i~flDa~ 157 (157)
++++++|+|+|
T Consensus 78 ~~~~i~~~D~D 88 (180)
T cd06423 78 KGDIVVVLDAD 88 (180)
T ss_pred CCCEEEEECCC
Confidence 99999999997
No 34
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.71 E-value=1.2e-16 Score=121.05 Aligned_cols=85 Identities=26% Similarity=0.328 Sum_probs=73.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHH--HhcCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy3172 68 ATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEE--LERIEKVSVLRNDKREGLMRSRVKGADA 145 (157)
Q Consensus 68 ~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~--~~~~~~v~vi~~~~n~G~~~a~n~g~~~ 145 (157)
+||||||+||++...|.+||+++++|+ .+ |||||||||+|++.... ....+.++++. .++.|++.|+|.|++.
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~--~~--eiivvdd~s~d~~~~~l~~~~~~~~~~v~~-~~~~g~~~a~n~g~~~ 75 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK--PL--EIIVVTDGDDEPYLSILSQTVKYGGIFVIT-VPHPGKRRALAEGIRH 75 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC--CC--EEEEEeCCCChHHHHHHHhhccCCcEEEEe-cCCCChHHHHHHHHHH
Confidence 489999999998339999999999998 45 99999999999986543 33556676665 5789999999999999
Q ss_pred cCCCEEEEEcCC
Q psy3172 146 ATAPVLTFLDSH 157 (157)
Q Consensus 146 a~gd~i~flDa~ 157 (157)
++|++++|+|+|
T Consensus 76 a~~d~v~~lD~D 87 (235)
T cd06434 76 VTTDIVVLLDSD 87 (235)
T ss_pred hCCCEEEEECCC
Confidence 999999999998
No 35
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.71 E-value=9.1e-17 Score=118.14 Aligned_cols=86 Identities=19% Similarity=0.162 Sum_probs=69.9
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc----
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAA---- 146 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a---- 146 (157)
||||+||++ ..|.+||+++.+|+++....|||||||||+|+|.+...+....+.+...+.+.|++.|+|.|++.+
T Consensus 1 VvIp~~ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~ 79 (183)
T cd06438 1 ILIPAHNEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLA 79 (183)
T ss_pred CEEeccchH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcC
Confidence 699999999 599999999999998533349999999999998654433333444444567889999999999876
Q ss_pred -CCCEEEEEcCC
Q psy3172 147 -TAPVLTFLDSH 157 (157)
Q Consensus 147 -~gd~i~flDa~ 157 (157)
++++++|+|||
T Consensus 80 ~~~d~v~~~DaD 91 (183)
T cd06438 80 DDPDAVVVFDAD 91 (183)
T ss_pred CCCCEEEEEcCC
Confidence 49999999998
No 36
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.70 E-value=1.1e-16 Score=120.10 Aligned_cols=86 Identities=26% Similarity=0.206 Sum_probs=72.5
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHH----hcCCCEEEEEcC--CCCCHHHHHHHHHH
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEEL----ERIEKVSVLRND--KREGLMRSRVKGAD 144 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~----~~~~~v~vi~~~--~n~G~~~a~n~g~~ 144 (157)
||||+||+. ..|.+||+|++.|++++...|||||||||+|.+..... ...++++++..+ .+.|...++|.|++
T Consensus 1 viip~~n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~ 79 (229)
T cd04192 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIK 79 (229)
T ss_pred CEEEecCcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHH
Confidence 699999998 59999999999999987222999999999998854321 234678888766 57899999999999
Q ss_pred HcCCCEEEEEcCC
Q psy3172 145 AATAPVLTFLDSH 157 (157)
Q Consensus 145 ~a~gd~i~flDa~ 157 (157)
.++++||+|+|+|
T Consensus 80 ~~~~d~i~~~D~D 92 (229)
T cd04192 80 AAKGDWIVTTDAD 92 (229)
T ss_pred HhcCCEEEEECCC
Confidence 9999999999997
No 37
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.70 E-value=1.3e-16 Score=116.62 Aligned_cols=84 Identities=25% Similarity=0.263 Sum_probs=71.6
Q ss_pred EEEEecCCchHHHHHHHHHHHhhC---CCCCccEEEEEeCCCCCchHH---HHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Q psy3172 71 VIITFHNEARSALLRSVVSIINRT---PAHLLKEIILVDDFSDDPSDG---EELERIEKVSVLRNDKREGLMRSRVKGAD 144 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~---~~~~~~eIivvddgS~d~t~~---~~~~~~~~v~vi~~~~n~G~~~a~n~g~~ 144 (157)
||||+||++ ..|.++|+++..+. +..+ |||||||||+|++.. ...++.+++++++..+|.|.+.|+|.|++
T Consensus 1 viIp~~n~~-~~l~~~l~sl~~~~~~~~~~~--eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~ 77 (181)
T cd04187 1 IVVPVYNEE-ENLPELYERLKAVLESLGYDY--EIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLD 77 (181)
T ss_pred CEEeecCch-hhHHHHHHHHHHHHHhcCCCe--EEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHH
Confidence 699999999 58988888887654 4556 999999999998743 22335678999998899999999999999
Q ss_pred HcCCCEEEEEcCC
Q psy3172 145 AATAPVLTFLDSH 157 (157)
Q Consensus 145 ~a~gd~i~flDa~ 157 (157)
.++|++++|+|+|
T Consensus 78 ~a~~d~i~~~D~D 90 (181)
T cd04187 78 HARGDAVITMDAD 90 (181)
T ss_pred hcCCCEEEEEeCC
Confidence 9999999999997
No 38
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.69 E-value=3.1e-16 Score=111.84 Aligned_cols=84 Identities=25% Similarity=0.293 Sum_probs=75.2
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATAPV 150 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~gd~ 150 (157)
||||+||+. ..|.++|.|+.+|+++.+ ||+|+||||++++.........+++++..+.+.|++.|+|.|++.+++++
T Consensus 1 vii~~~~~~-~~l~~~l~sl~~~~~~~~--~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~~~~ 77 (166)
T cd04186 1 IIIVNYNSL-EYLKACLDSLLAQTYPDF--EVIVVDNASTDGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDY 77 (166)
T ss_pred CEEEecCCH-HHHHHHHHHHHhccCCCe--EEEEEECCCCchHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCCCCE
Confidence 689999998 599999999999998667 99999999999886555444557899998899999999999999999999
Q ss_pred EEEEcCC
Q psy3172 151 LTFLDSH 157 (157)
Q Consensus 151 i~flDa~ 157 (157)
++|+|+|
T Consensus 78 i~~~D~D 84 (166)
T cd04186 78 VLLLNPD 84 (166)
T ss_pred EEEECCC
Confidence 9999997
No 39
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.69 E-value=1.9e-16 Score=115.49 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=73.8
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCC--CCCccEEEEEeCCCCCchHH---HHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTP--AHLLKEIILVDDFSDDPSDG---EELERIEKVSVLRNDKREGLMRSRVKGADA 145 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~--~~~~~eIivvddgS~d~t~~---~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~ 145 (157)
||||+||+. ..|.+||+|+.+|++ ..+ |||||||+|++++.. ......+.++++..++|.|++.|+|.|++.
T Consensus 1 iii~~~n~~-~~l~~~l~sl~~~~~~~~~~--eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~ 77 (185)
T cd04179 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDY--EIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKA 77 (185)
T ss_pred CeecccChH-hhHHHHHHHHHHHhccCCCE--EEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHH
Confidence 689999998 599999999999986 455 999999999998743 233356778899999999999999999999
Q ss_pred cCCCEEEEEcCC
Q psy3172 146 ATAPVLTFLDSH 157 (157)
Q Consensus 146 a~gd~i~flDa~ 157 (157)
|+|+|++|+|+|
T Consensus 78 a~gd~i~~lD~D 89 (185)
T cd04179 78 ARGDIVVTMDAD 89 (185)
T ss_pred hcCCEEEEEeCC
Confidence 999999999987
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.68 E-value=3.4e-16 Score=114.09 Aligned_cols=84 Identities=27% Similarity=0.287 Sum_probs=68.3
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHH---hc--CCCEEEEEcCCCCCHHHHHHHHHHH
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEEL---ER--IEKVSVLRNDKREGLMRSRVKGADA 145 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~---~~--~~~v~vi~~~~n~G~~~a~n~g~~~ 145 (157)
||||+||+. ..|.+||+|+.+|+++++ ||||+||||+|.+..... .. ...+.+.+.+.+.|.+.++|.|++.
T Consensus 1 ivip~~n~~-~~l~~~l~sl~~q~~~~~--eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~ 77 (182)
T cd06420 1 LIITTYNRP-EALELVLKSVLNQSILPF--EVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAA 77 (182)
T ss_pred CEEeecCCh-HHHHHHHHHHHhccCCCC--EEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHH
Confidence 689999999 599999999999998888 999999999998743221 21 1223444555566789999999999
Q ss_pred cCCCEEEEEcCC
Q psy3172 146 ATAPVLTFLDSH 157 (157)
Q Consensus 146 a~gd~i~flDa~ 157 (157)
++|+|++|||+|
T Consensus 78 a~g~~i~~lD~D 89 (182)
T cd06420 78 AKGDYLIFIDGD 89 (182)
T ss_pred hcCCEEEEEcCC
Confidence 999999999997
No 41
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.68 E-value=2.7e-16 Score=117.89 Aligned_cols=82 Identities=35% Similarity=0.361 Sum_probs=70.8
Q ss_pred EEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Q psy3172 69 TSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATA 148 (157)
Q Consensus 69 vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~g 148 (157)
||||||+||++. .|.+||+|+++|+++.+ |||||||+|+|++..... . ..++++. .+.|.+.++|.|+..|+|
T Consensus 1 vsvii~~~n~~~-~l~~~l~sl~~q~~~~~--evivvdd~s~d~~~~~~~-~-~~~~~~~--~~~g~~~a~n~g~~~a~~ 73 (221)
T cd02522 1 LSIIIPTLNEAE-NLPRLLASLRRLNPLPL--EIIVVDGGSTDGTVAIAR-S-AGVVVIS--SPKGRARQMNAGAAAARG 73 (221)
T ss_pred CEEEEEccCcHH-HHHHHHHHHHhccCCCc--EEEEEeCCCCccHHHHHh-c-CCeEEEe--CCcCHHHHHHHHHHhccC
Confidence 689999999995 99999999999998777 999999999999864332 2 5666655 467899999999999999
Q ss_pred CEEEEEcCC
Q psy3172 149 PVLTFLDSH 157 (157)
Q Consensus 149 d~i~flDa~ 157 (157)
++++|+|+|
T Consensus 74 ~~i~~~D~D 82 (221)
T cd02522 74 DWLLFLHAD 82 (221)
T ss_pred CEEEEEcCC
Confidence 999999997
No 42
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.68 E-value=5e-16 Score=117.98 Aligned_cols=88 Identities=23% Similarity=0.264 Sum_probs=73.6
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH---HHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Q psy3172 68 ATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG---EELERIEKVSVLRNDKREGLMRSRVKGAD 144 (157)
Q Consensus 68 ~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~---~~~~~~~~v~vi~~~~n~G~~~a~n~g~~ 144 (157)
++|||||+||++ ..|.++|.++.+|+++....|||||||||+|++.. ......+.++++..+ +.|.+.|+|.|++
T Consensus 1 ~~sIiip~~n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~-~~~~~~a~N~g~~ 78 (249)
T cd02525 1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP-KRIQSAGLNIGIR 78 (249)
T ss_pred CEEEEEEcCCch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC-CCCchHHHHHHHH
Confidence 389999999998 49999999999999852233999999999998743 223345678888764 5689999999999
Q ss_pred HcCCCEEEEEcCC
Q psy3172 145 AATAPVLTFLDSH 157 (157)
Q Consensus 145 ~a~gd~i~flDa~ 157 (157)
.+++++++|||+|
T Consensus 79 ~a~~d~v~~lD~D 91 (249)
T cd02525 79 NSRGDIIIRVDAH 91 (249)
T ss_pred HhCCCEEEEECCC
Confidence 9999999999997
No 43
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.68 E-value=3.4e-16 Score=116.15 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=69.9
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHH-h-cCCCEEEEEc---CCCCCHHHHHHHHHHH
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEEL-E-RIEKVSVLRN---DKREGLMRSRVKGADA 145 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~-~-~~~~v~vi~~---~~n~G~~~a~n~g~~~ 145 (157)
||||+||++ ..|.+||+|+++|+ +.+ |||||||||+|.|..... . ..+++++++. ..+.|++.|+|.|++.
T Consensus 1 ViIp~~Ne~-~~l~~~l~sl~~~~-~~~--eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~ 76 (191)
T cd06436 1 VLVPCLNEE-AVIQRTLASLLRNK-PNF--LVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQ 76 (191)
T ss_pred CEEeccccH-HHHHHHHHHHHhCC-CCe--EEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 699999999 59999999999999 667 999999999999864433 2 3467888875 3568999999999998
Q ss_pred cC-----------CCEEEEEcCC
Q psy3172 146 AT-----------APVLTFLDSH 157 (157)
Q Consensus 146 a~-----------gd~i~flDa~ 157 (157)
++ +++|+|+|||
T Consensus 77 ~~~~~~~~g~~~~~d~v~~~DaD 99 (191)
T cd06436 77 IRQILIEEGADPERVIIAVIDAD 99 (191)
T ss_pred HhhhccccccCCCccEEEEECCC
Confidence 75 3799999998
No 44
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.67 E-value=4.9e-16 Score=115.38 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=72.0
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHHHc--
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER--IEKVSVLRNDKREGLMRSRVKGADAA-- 146 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~--~~~v~vi~~~~n~G~~~a~n~g~~~a-- 146 (157)
||||+||++ ..|.+||.|+++|+++.+ ||||+||||+|.+.....+. ...+++++.++|.|.+.++|.|++.+
T Consensus 1 viI~~~n~~-~~l~~~l~sl~~q~~~~~--eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~~ 77 (202)
T cd04185 1 AVVVTYNRL-DLLKECLDALLAQTRPPD--HIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYE 77 (202)
T ss_pred CEEEeeCCH-HHHHHHHHHHHhccCCCc--eEEEEECCCCcchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHhc
Confidence 699999999 599999999999998877 99999999999985433322 22378999999999999999998876
Q ss_pred -CCCEEEEEcCC
Q psy3172 147 -TAPVLTFLDSH 157 (157)
Q Consensus 147 -~gd~i~flDa~ 157 (157)
++++++|+|+|
T Consensus 78 ~~~d~v~~ld~D 89 (202)
T cd04185 78 LGYDWIWLMDDD 89 (202)
T ss_pred cCCCEEEEeCCC
Confidence 79999999997
No 45
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.65 E-value=8e-16 Score=116.61 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=70.2
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCC--
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATA-- 148 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~g-- 148 (157)
+|||+||+....|.+||+|+++| .. |||||||+|++.+........+++++++.+.|.|.+.|+|.|++.|+|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q---~~--~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~ 75 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ---VD--KVVVVDNSSGNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENG 75 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc---CC--EEEEEeCCCCccHHHHhhccCCcEEEEECCCceehHHhhhHHHHHHHhCC
Confidence 58999999923999999999998 34 999999999887643322236789999999999999999999999987
Q ss_pred -CEEEEEcCC
Q psy3172 149 -PVLTFLDSH 157 (157)
Q Consensus 149 -d~i~flDa~ 157 (157)
+|++|+|+|
T Consensus 76 ~d~v~~lD~D 85 (237)
T cd02526 76 ADYVLLFDQD 85 (237)
T ss_pred CCEEEEECCC
Confidence 999999998
No 46
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.65 E-value=1.3e-15 Score=134.40 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=76.6
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCC-CCHHHHHHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKR-EGLMRSRVKGA 143 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n-~G~~~a~n~g~ 143 (157)
..|+|||+||+|||+...+.+++.++++++||.-..||+|+||||+|++. .+++..++++++.+.| .|++.++|.|+
T Consensus 258 ~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~--~la~~~~v~yI~R~~n~~gKAGnLN~aL 335 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFR--QFAQEVGVKYIARPTHEHAKAGNINNAL 335 (852)
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHH--HHHHHCCcEEEEeCCCCcchHHHHHHHH
Confidence 36899999999999855678899999999998644599999999999873 3334457888876654 46899999999
Q ss_pred HHcCCCEEEEEcCC
Q psy3172 144 DAATAPVLTFLDSH 157 (157)
Q Consensus 144 ~~a~gd~i~flDa~ 157 (157)
+.++||+|+++|||
T Consensus 336 ~~a~GEyIavlDAD 349 (852)
T PRK11498 336 KYAKGEFVAIFDCD 349 (852)
T ss_pred HhCCCCEEEEECCC
Confidence 99999999999998
No 47
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.64 E-value=2.6e-15 Score=131.42 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=76.2
Q ss_pred CCCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH-------------H---HHHhcCCCEEEE
Q psy3172 64 RDLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD-------------G---EELERIEKVSVL 127 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~-------------~---~~~~~~~~v~vi 127 (157)
...|+|||+||+|||+...+.+|+.++++++||.-..||+|+||||+|+|. . ..+++..+++++
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi 207 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYI 207 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEE
Confidence 446899999999999864667899999999998433499999999999761 0 122234578888
Q ss_pred EcCCCC-CHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 128 RNDKRE-GLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 128 ~~~~n~-G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
+.++|. +++.++|.|++.++||+++++|||
T Consensus 208 ~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD 238 (713)
T TIGR03030 208 TRPRNVHAKAGNINNALKHTDGELILIFDAD 238 (713)
T ss_pred ECCCCCCCChHHHHHHHHhcCCCEEEEECCC
Confidence 877765 578999999999999999999998
No 48
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=5.9e-15 Score=121.45 Aligned_cols=90 Identities=28% Similarity=0.311 Sum_probs=78.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHH---HhcC-CCEEEEEc-CCCCCHHHHHH
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEE---LERI-EKVSVLRN-DKREGLMRSRV 140 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~---~~~~-~~v~vi~~-~~n~G~~~a~n 140 (157)
.|+++|+||+|||+...+++++.++.+|+|+.+ ||++|||+|+|++.+.. .... ++++++.. .++.|++.|.|
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~--evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~ 130 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY--EVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALN 130 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCc--eEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHH
Confidence 589999999999996599999999999999998 99999999999985422 2234 47777754 57889999999
Q ss_pred HHHHHcCCCEEEEEcCC
Q psy3172 141 KGADAATAPVLTFLDSH 157 (157)
Q Consensus 141 ~g~~~a~gd~i~flDa~ 157 (157)
.|+..++||+++++|||
T Consensus 131 ~~l~~~~~d~V~~~DaD 147 (439)
T COG1215 131 NGLKRAKGDVVVILDAD 147 (439)
T ss_pred HHHhhcCCCEEEEEcCC
Confidence 99999999999999998
No 49
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.60 E-value=1.3e-15 Score=114.90 Aligned_cols=88 Identities=32% Similarity=0.423 Sum_probs=62.0
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCch---HHHHHhcCC--CEEEEEcCCCCC---HHHH
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPS---DGEELERIE--KVSVLRNDKREG---LMRS 138 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t---~~~~~~~~~--~v~vi~~~~n~G---~~~a 138 (157)
|.|+||||+||+.. .|.++|.|++.|+++++ ||+|+||+|++++ +.+..+..+ ++++++.+.+.| ++.+
T Consensus 1 P~v~Vvip~~~~~~-~l~~~l~sl~~~~~~~~--~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a 77 (228)
T PF13641_consen 1 PRVSVVIPAYNEDD-VLRRCLESLLAQDYPRL--EVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARA 77 (228)
T ss_dssp --EEEE--BSS-HH-HHHHHHHHHTTSHHHTE--EEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHH
T ss_pred CEEEEEEEecCCHH-HHHHHHHHHHcCCCCCe--EEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHH
Confidence 67999999999994 99999999999998777 9999999999886 333444555 468888776565 6889
Q ss_pred HHHHHHHcCCCEEEEEcCC
Q psy3172 139 RVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a~gd~i~flDa~ 157 (157)
+|.|++.+++++|+|+|+|
T Consensus 78 ~n~~~~~~~~d~i~~lD~D 96 (228)
T PF13641_consen 78 LNEALAAARGDYILFLDDD 96 (228)
T ss_dssp HHHHHHH---SEEEEE-SS
T ss_pred HHHHHHhcCCCEEEEECCC
Confidence 9999999999999999997
No 50
>KOG2978|consensus
Probab=99.60 E-value=7.7e-15 Score=107.71 Aligned_cols=89 Identities=24% Similarity=0.316 Sum_probs=71.9
Q ss_pred CcEEEEEEecCCchH--HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHH--h---cCCCEEEEEcCCCCCHHHHH
Q psy3172 67 PATSVIITFHNEARS--ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEEL--E---RIEKVSVLRNDKREGLMRSR 139 (157)
Q Consensus 67 p~vSiIIp~yn~~~~--~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~--~---~~~~v~vi~~~~n~G~~~a~ 139 (157)
++.|||+|+|||... .+.+++.....+....+ |||+|||+|+|+|.+... + ..+++++.......|++.|.
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~--eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy 80 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKY--EIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAY 80 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCce--EEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHH
Confidence 578999999999852 33444555555555566 999999999999854332 2 46789988888899999999
Q ss_pred HHHHHHcCCCEEEEEcCC
Q psy3172 140 VKGADAATAPVLTFLDSH 157 (157)
Q Consensus 140 n~g~~~a~gd~i~flDa~ 157 (157)
-.|+..|+|+|+++||||
T Consensus 81 ~hgl~~a~g~fiviMDaD 98 (238)
T KOG2978|consen 81 IHGLKHATGDFIVIMDAD 98 (238)
T ss_pred HhhhhhccCCeEEEEeCc
Confidence 999999999999999998
No 51
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.56 E-value=2.5e-14 Score=111.92 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=69.2
Q ss_pred EecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCc-hHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc---CCC
Q psy3172 74 TFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDP-SDGEELERIEKVSVLRNDKREGLMRSRVKGADAA---TAP 149 (157)
Q Consensus 74 p~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~-t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a---~gd 149 (157)
++||+....|.+||+|+++|+. +||||||||++. ++....+..+++++++.++|.|.+.|+|.|++.| .+|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~~-----~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d 75 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQVD-----RIIAVDNSPHSDQPLKNARLRGQKIALIHLGDNQGIAGAQNQGLDASFRRGVQ 75 (281)
T ss_pred CccCccHHHHHHHHHHHHhcCC-----EEEEEECcCCCcHhHHHHhccCCCeEEEECCCCcchHHHHHHHHHHHHHCCCC
Confidence 3799854699999999999963 999999999765 5556566778999999999999999999999998 789
Q ss_pred EEEEEcCC
Q psy3172 150 VLTFLDSH 157 (157)
Q Consensus 150 ~i~flDa~ 157 (157)
||+|||.|
T Consensus 76 ~i~~lD~D 83 (281)
T TIGR01556 76 GVLLLDQD 83 (281)
T ss_pred EEEEECCC
Confidence 99999997
No 52
>KOG2977|consensus
Probab=99.54 E-value=3.5e-14 Score=109.97 Aligned_cols=90 Identities=27% Similarity=0.257 Sum_probs=75.8
Q ss_pred cEEEEEEecCCchH---HHHHHHHHHHhhC--CCCCccEEEEEeCCCCCchHHHHHh-----cCCCEEEEEcCCCCCHHH
Q psy3172 68 ATSVIITFHNEARS---ALLRSVVSIINRT--PAHLLKEIILVDDFSDDPSDGEELE-----RIEKVSVLRNDKREGLMR 137 (157)
Q Consensus 68 ~vSiIIp~yn~~~~---~l~~~l~sl~~q~--~~~~~~eIivvddgS~d~t~~~~~~-----~~~~v~vi~~~~n~G~~~ 137 (157)
-+|||||+|||... .|.+|++.+.... .+++.+||+||||||+|.|.+..+. ...+++|+...+|.|+|.
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGg 147 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGG 147 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCc
Confidence 69999999999853 6777777776553 3456779999999999999654433 346899999999999999
Q ss_pred HHHHHHHHcCCCEEEEEcCC
Q psy3172 138 SRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 138 a~n~g~~~a~gd~i~flDa~ 157 (157)
|...|+-.++|++++|.|||
T Consensus 148 AvR~g~l~~rG~~ilfadAd 167 (323)
T KOG2977|consen 148 AVRKGMLSSRGQKILFADAD 167 (323)
T ss_pred ceehhhHhccCceEEEEcCC
Confidence 99999999999999999998
No 53
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.52 E-value=1.1e-13 Score=110.03 Aligned_cols=89 Identities=25% Similarity=0.299 Sum_probs=80.0
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHH
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER-IEKVSVLRNDKREGLMRSRVKGAD 144 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~-~~~v~vi~~~~n~G~~~a~n~g~~ 144 (157)
+|.+++||++||.. +.+.+||.++.+|+++.. ++++|||+|+|.+.+..... .+++++++..+|.|.+++.|.|++
T Consensus 2 ~~~i~~iiv~yn~~-~~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~ 78 (305)
T COG1216 2 MPKISIIIVTYNRG-EDLVECLASLAAQTYPDD--VIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAGGFNRGIK 78 (305)
T ss_pred CcceEEEEEecCCH-HHHHHHHHHHhcCCCCCc--EEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchhhhhHHHH
Confidence 57899999999999 599999999999999876 88889999999997655556 799999999999999999999999
Q ss_pred HcCCC---EEEEEcCC
Q psy3172 145 AATAP---VLTFLDSH 157 (157)
Q Consensus 145 ~a~gd---~i~flDa~ 157 (157)
.|.++ |+++|+-|
T Consensus 79 ~a~~~~~~~~l~LN~D 94 (305)
T COG1216 79 YALAKGDDYVLLLNPD 94 (305)
T ss_pred HHhcCCCcEEEEEcCC
Confidence 99655 89999866
No 54
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.49 E-value=5.6e-14 Score=108.16 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=56.2
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCC----------CCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHH---
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPA----------HLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMR--- 137 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~----------~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~--- 137 (157)
||||+|||+...|.++|+|+++|+|+ .+ |||||+|||+| .|.|+..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~--evivv~Dgs~d-------------------~~~gk~~~~~ 59 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKI--VVCVIFDGAIK-------------------KNRGKRDSQL 59 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEE--EEEEEeCCccc-------------------ccCcchHHHH
Confidence 69999999745999999999999998 55 99999999999 2334332
Q ss_pred ----HHHHHHHHcCCCEEEEEcCC
Q psy3172 138 ----SRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 138 ----a~n~g~~~a~gd~i~flDa~ 157 (157)
+.|.|+..++|++++++|||
T Consensus 60 ~~~~~~~~~~~~a~~e~i~~~DaD 83 (244)
T cd04190 60 WFFNYFCRVLFPDDPEFILLVDAD 83 (244)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCC
Confidence 56788888999999999998
No 55
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.45 E-value=9.2e-13 Score=103.63 Aligned_cols=86 Identities=28% Similarity=0.317 Sum_probs=65.1
Q ss_pred EEEEEecCCch-----HHHHHHHHHHHhh-CCCCCccEEEEEeCCCCCch---HHHHHhcCCCEEEEEcCC---CCCHHH
Q psy3172 70 SVIITFHNEAR-----SALLRSVVSIINR-TPAHLLKEIILVDDFSDDPS---DGEELERIEKVSVLRNDK---REGLMR 137 (157)
Q Consensus 70 SiIIp~yn~~~-----~~l~~~l~sl~~q-~~~~~~~eIivvddgS~d~t---~~~~~~~~~~v~vi~~~~---n~G~~~ 137 (157)
|||||+++... ..|..||.++..+ ..+++ ||||||+||+... +..........+++..+. ..|.+.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~--eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ 78 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDF--EIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK 78 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCE--EEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH
Confidence 79999998873 2466667777774 35566 9999999999874 333334444444655543 369999
Q ss_pred HHHHHHHHcCCCEEEEEcCC
Q psy3172 138 SRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 138 a~n~g~~~a~gd~i~flDa~ 157 (157)
|||.|++.|++++|+|+|+|
T Consensus 79 arN~g~~~A~~d~l~flD~D 98 (281)
T PF10111_consen 79 ARNIGAKYARGDYLIFLDAD 98 (281)
T ss_pred HHHHHHHHcCCCEEEEEcCC
Confidence 99999999999999999998
No 56
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.44 E-value=1.6e-12 Score=109.69 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=72.0
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHh-hCCCCCccEEEEEeCCCCCchHH---HHHhcCCCEEEEEcCC--CCCHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIIN-RTPAHLLKEIILVDDFSDDPSDG---EELERIEKVSVLRNDK--REGLMRS 138 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~-q~~~~~~~eIivvddgS~d~t~~---~~~~~~~~v~vi~~~~--n~G~~~a 138 (157)
+.|.++|+||+|||+ ..|.++|++++. +.|+.+ ||+|++|+|+|.|.. +..+++++++++..+. ..|++.|
T Consensus 64 ~~p~vaIlIPA~NE~-~vI~~~l~s~L~~ldY~~~--eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~a 140 (504)
T PRK14716 64 PEKRIAIFVPAWREA-DVIGRMLEHNLATLDYENY--RIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADC 140 (504)
T ss_pred CCCceEEEEeccCch-hHHHHHHHHHHHcCCCCCe--EEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHH
Confidence 368899999999999 599999999765 569887 999999999998743 3344678877554332 3469999
Q ss_pred HHHHHHHc------CC---CEEEEEcCC
Q psy3172 139 RVKGADAA------TA---PVLTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a------~g---d~i~flDa~ 157 (157)
+|.|++.+ +| |+++++|||
T Consensus 141 LN~~l~~~~~~e~~~G~~~d~vvi~DAD 168 (504)
T PRK14716 141 LNWIYQAIFAFERERGIRFAIIVLHDAE 168 (504)
T ss_pred HHHHHHHHHHhhhhcCCCcCEEEEEcCC
Confidence 99998654 56 999999997
No 57
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.40 E-value=3.1e-12 Score=99.55 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=66.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHHh----hCC-CCCccEEEEEeCCCCCchH-HH------H---HhcCCCEEEEEcCCCC
Q psy3172 69 TSVIITFHNEARSALLRSVVSIIN----RTP-AHLLKEIILVDDFSDDPSD-GE------E---LERIEKVSVLRNDKRE 133 (157)
Q Consensus 69 vSiIIp~yn~~~~~l~~~l~sl~~----q~~-~~~~~eIivvddgS~d~t~-~~------~---~~~~~~v~vi~~~~n~ 133 (157)
|||+||+||+....|.++|.+... |.| +.+ ||+|+||++++... .+ . +....++++++.+.|.
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~--eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~ 78 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHF--DFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENT 78 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCce--EEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCC
Confidence 699999999997568999988775 665 677 99999999876531 11 1 1225678999988888
Q ss_pred CH-HHHHHHHHHH--cCCCEEEEEcCC
Q psy3172 134 GL-MRSRVKGADA--ATAPVLTFLDSH 157 (157)
Q Consensus 134 G~-~~a~n~g~~~--a~gd~i~flDa~ 157 (157)
|. ++++|.++.. +++++|+++|||
T Consensus 79 g~Kag~l~~~~~~~~~~~~~i~~~DaD 105 (254)
T cd04191 79 GRKAGNIADFCRRWGSRYDYMVVLDAD 105 (254)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 84 5566666665 688999999998
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.34 E-value=1.2e-11 Score=85.57 Aligned_cols=84 Identities=33% Similarity=0.373 Sum_probs=71.5
Q ss_pred EEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER---IEKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 71 iIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~---~~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
|+||++|+. ..+.+++.++..+.++.. ||+++||++++.+....... ...+..+....+.|.+.++|.++..+.
T Consensus 1 iii~~~~~~-~~l~~~l~s~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 77 (156)
T cd00761 1 VIIPAYNEE-PYLERCLESLLAQTYPNF--EVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAAR 77 (156)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCccce--EEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhc
Confidence 589999998 599999999999997666 99999999998875433332 245677777889999999999999999
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
+++++++|+|
T Consensus 78 ~d~v~~~d~D 87 (156)
T cd00761 78 GEYILFLDAD 87 (156)
T ss_pred CCEEEEECCC
Confidence 9999999997
No 59
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.31 E-value=2.2e-11 Score=106.63 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=72.2
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHH-hhCCCCCccEEEEEeCCCCCchH---HHHHhcCCCEEEEEcCC--CCCHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSII-NRTPAHLLKEIILVDDFSDDPSD---GEELERIEKVSVLRNDK--REGLMRS 138 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~-~q~~~~~~~eIivvddgS~d~t~---~~~~~~~~~v~vi~~~~--n~G~~~a 138 (157)
..|++||+||+|||+ ..+.+++++++ .++||++ ||+++++++++.|. ++..+++++++++..++ +.|++.|
T Consensus 61 ~~~~vsIlVPa~nE~-~vi~~~i~~ll~~ldYP~~--eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~a 137 (727)
T PRK11234 61 DEKPLAIMVPAWNET-GVIGNMAELAATTLDYENY--HIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADC 137 (727)
T ss_pred CCCCEEEEEecCcch-hhHHHHHHHHHHhCCCCCe--EEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHH
Confidence 468899999999999 59999999987 6789997 99999887766653 33344678887655444 7899999
Q ss_pred HHHHHHHc-------CC--CEEEEEcCC
Q psy3172 139 RVKGADAA-------TA--PVLTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a-------~g--d~i~flDa~ 157 (157)
+|.|++.+ ++ ++++++|||
T Consensus 138 LN~~l~~~~~~e~~~~~~~~vvvi~DAD 165 (727)
T PRK11234 138 LNNVLDAITQFERSANFAFAGFILHDAE 165 (727)
T ss_pred HHHHHHHHHhhhcccCCcccEEEEEcCC
Confidence 99999987 33 568889997
No 60
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.20 E-value=1.1e-10 Score=101.69 Aligned_cols=90 Identities=9% Similarity=0.039 Sum_probs=72.4
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHH-hhCCCCCccEEEE---EeCCCCCchHHHHHhcCCCEEEEEcCCC--CCHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSII-NRTPAHLLKEIIL---VDDFSDDPSDGEELERIEKVSVLRNDKR--EGLMRS 138 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~-~q~~~~~~~eIiv---vddgS~d~t~~~~~~~~~~v~vi~~~~n--~G~~~a 138 (157)
..|.+||+||+|||+ ..+.+++++++ .+.||++ ||+| .||++|...++.....+|++++++.+.+ .|++.|
T Consensus 69 ~~~~vsIlVPa~nE~-~VI~~~v~~ll~~ldYp~~--~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~A 145 (703)
T PRK15489 69 DEQPLAIMVPAWKEY-DVIAKMIENMLATLDYRRY--VIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADC 145 (703)
T ss_pred CCCceEEEEeCCCcH-HHHHHHHHHHHhcCCCCCe--EEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHH
Confidence 357899999999999 59999999987 6689988 9999 5788666666555556788888776544 789999
Q ss_pred HHHHHHHc-------CCCE--EEEEcCC
Q psy3172 139 RVKGADAA-------TAPV--LTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a-------~gd~--i~flDa~ 157 (157)
+|.|+..+ .+++ +++.|||
T Consensus 146 LN~~l~~~~~~e~~~~~~fa~vvi~DAE 173 (703)
T PRK15489 146 LNWIIQAIFRYEAGHGIEFAGVILHDSE 173 (703)
T ss_pred HHHHHHHHHhhhhhccCccceEEEEcCC
Confidence 99999876 3444 8999997
No 61
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.11 E-value=1.6e-09 Score=94.69 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCCcEEEEEEecCCchH----HHHHHHHHHHhhCCC-CCccEEEEEeCCCCCchHH-------HHHhc---CCCEEEEEc
Q psy3172 65 DLPATSVIITFHNEARS----ALLRSVVSIINRTPA-HLLKEIILVDDFSDDPSDG-------EELER---IEKVSVLRN 129 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~----~l~~~l~sl~~q~~~-~~~~eIivvddgS~d~t~~-------~~~~~---~~~v~vi~~ 129 (157)
..|+|+|+||+|||+.. .|+.+++|+..|.++ ++ ||+|+||++++.+.. +..++ ..++.+.+.
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~--e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R 199 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHF--DFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRR 199 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCE--EEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 36789999999999842 688899999999865 56 999999999987632 11222 347888877
Q ss_pred CCCCC-HHHHHHHHHHH--cCCCEEEEEcCC
Q psy3172 130 DKREG-LMRSRVKGADA--ATAPVLTFLDSH 157 (157)
Q Consensus 130 ~~n~G-~~~a~n~g~~~--a~gd~i~flDa~ 157 (157)
..|.| ++..+|.+.+. +++||++.+|||
T Consensus 200 ~~n~~~KaGNl~~~~~~~~~~~eyivvLDAD 230 (691)
T PRK05454 200 RRNVGRKAGNIADFCRRWGGAYDYMVVLDAD 230 (691)
T ss_pred CcCCCccHHHHHHHHHhcCCCcCEEEEEcCC
Confidence 77766 56666666777 566999999998
No 62
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.72 E-value=1.1e-07 Score=76.70 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=64.0
Q ss_pred EEEEEEecCCchHHHHHHHHHHHhh--CCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCC----C----------
Q psy3172 69 TSVIITFHNEARSALLRSVVSIINR--TPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDK----R---------- 132 (157)
Q Consensus 69 vSiIIp~yn~~~~~l~~~l~sl~~q--~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~----n---------- 132 (157)
+.|||++||.. .+|.+||+||++| +...+ +|+|.+||+.+++.........+++++.+.. +
T Consensus 2 ~PVlv~ayNRp-~~l~r~LesLl~~~p~~~~~--~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y 78 (334)
T cd02514 2 IPVLVIACNRP-DYLRRMLDSLLSYRPSAEKF--PIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGY 78 (334)
T ss_pred cCEEEEecCCH-HHHHHHHHHHHhccccCCCc--eEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchh
Confidence 57899999999 5999999999998 45456 9999999998775433322223566665421 2
Q ss_pred CCHHH----HHHHHHHHcCCCEEEEEcCC
Q psy3172 133 EGLMR----SRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 133 ~G~~~----a~n~g~~~a~gd~i~flDa~ 157 (157)
.+.+. |+|.++..+.++.+++|+.|
T Consensus 79 ~~ia~hyk~aln~vF~~~~~~~vIILEDD 107 (334)
T cd02514 79 YRIARHYKWALTQTFNLFGYSFVIILEDD 107 (334)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 22344 88999988899999999976
No 63
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=98.37 E-value=5.2e-06 Score=54.87 Aligned_cols=76 Identities=24% Similarity=0.162 Sum_probs=53.5
Q ss_pred cCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCC---H-HHHHHHHHHH-cCCCE
Q psy3172 76 HNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREG---L-MRSRVKGADA-ATAPV 150 (157)
Q Consensus 76 yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G---~-~~a~n~g~~~-a~gd~ 150 (157)
+|++ ..|.+.|..-+.... .+++|+||||+|++. +.+.+.+.++++....... . ...++...+. ..++|
T Consensus 1 rne~-~~L~~wl~~~~~lG~----d~i~i~d~~s~D~t~-~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dW 74 (97)
T PF13704_consen 1 RNEA-DYLPEWLAHHLALGV----DHIYIYDDGSTDGTR-EILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADW 74 (97)
T ss_pred CChH-HHHHHHHHHHHHcCC----CEEEEEECCCCccHH-HHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCE
Confidence 4777 499999998876643 289999999999986 4556667788887655432 1 1233333333 37899
Q ss_pred EEEEcCC
Q psy3172 151 LTFLDSH 157 (157)
Q Consensus 151 i~flDa~ 157 (157)
++++|+|
T Consensus 75 vl~~D~D 81 (97)
T PF13704_consen 75 VLFLDAD 81 (97)
T ss_pred EEEEeee
Confidence 9999997
No 64
>KOG2547|consensus
Probab=97.66 E-value=0.00056 Score=55.62 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=73.8
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH---HHHHhcCCCE--EEEEcCCCCCHHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD---GEELERIEKV--SVLRNDKREGLMRSR 139 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~---~~~~~~~~~v--~vi~~~~n~G~~~a~ 139 (157)
+.|-||||-|.-.-.. .+...++|.....|+.+ |++.+-+.++|+.. +..++++|.| +++--.+..|...-.
T Consensus 83 ~LPgVSiikPl~G~d~-nl~~Nlesffts~Y~~~--ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKI 159 (431)
T KOG2547|consen 83 KLPGVSIIKPLKGVDP-NLYHNLESFFTSQYHKY--ELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKI 159 (431)
T ss_pred CCCCceEEeecccCCc-hhHHhHHHHHhhccCce--EEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhh
Confidence 5789999999998884 89999999999999977 99999999999864 3556678864 677666777755544
Q ss_pred HH---HHHHcCCCEEEEEcCC
Q psy3172 140 VK---GADAATAPVLTFLDSH 157 (157)
Q Consensus 140 n~---g~~~a~gd~i~flDa~ 157 (157)
|. |.+.|+.|+|++.|++
T Consensus 160 nN~mpgy~~a~ydlvlisDsg 180 (431)
T KOG2547|consen 160 NNMMPGYRAAKYDLVLISDSG 180 (431)
T ss_pred hccCHHHHHhcCCEEEEecCC
Confidence 43 8899999999999985
No 65
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=97.36 E-value=0.00041 Score=52.81 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=42.9
Q ss_pred EEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Q psy3172 69 TSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATA 148 (157)
Q Consensus 69 vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~g 148 (157)
||||+.+ |.+ ..+.+|+.++.++..+.. |+|-+++- ....+.+.+.|.|++.|++
T Consensus 1 isiI~c~-n~~-~~~~~~~~~i~~~~~~~~--~~i~i~~~---------------------~~~~s~~~~yN~a~~~a~~ 55 (217)
T PF13712_consen 1 ISIIICV-NDE-ELYEECLRSIKRLIGPPG--ELIEIDNV---------------------RNAKSMAAAYNEAMEKAKA 55 (217)
T ss_dssp EEEEEEE-S-H-HHHHHHHHHHHHTT--TE--EEEEEE-S---------------------SS-S-TTTHHHHHGGG--S
T ss_pred CEEEEEE-CCH-HHHHHHHHHHHhhCCCCc--eEEEEecc---------------------CCCcCHHHHHHHHHHhCCC
Confidence 4666655 555 389999999999976665 66666532 2335788999999999999
Q ss_pred CEEEEEcCC
Q psy3172 149 PVLTFLDSH 157 (157)
Q Consensus 149 d~i~flDa~ 157 (157)
+|++||+-|
T Consensus 56 ~ylvflHqD 64 (217)
T PF13712_consen 56 KYLVFLHQD 64 (217)
T ss_dssp SEEEEEETT
T ss_pred CEEEEEeCC
Confidence 999999755
No 66
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.18 E-value=0.0073 Score=49.03 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=49.1
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCC---Cch-HH-HH---Hhc--CCCEEEEEcCC-----
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSD---DPS-DG-EE---LER--IEKVSVLRNDK----- 131 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~---d~t-~~-~~---~~~--~~~v~vi~~~~----- 131 (157)
..++||||+.||..+ .|+.++..-+... -||||-|.+. |.- .+ +. +.. ...+-++|++.
T Consensus 50 ~~maIVVP~KnE~l~----lleGVL~gIPh~C--~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~ 123 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLK----LLEGVLSGIPHDC--LIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAE 123 (381)
T ss_dssp TTEEEEEEESS--HH----HHHHHHHCS-TTS--EEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHH
T ss_pred hCcEEEEECCCCchh----hhhhhhhcCCCCC--eEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHH
Confidence 469999999999863 5666776666555 8999998888 332 11 11 112 23466666532
Q ss_pred -----------------CCCHHHHHHHHHHHc---CCCEEEEEcCC
Q psy3172 132 -----------------REGLMRSRVKGADAA---TAPVLTFLDSH 157 (157)
Q Consensus 132 -----------------n~G~~~a~n~g~~~a---~gd~i~flDa~ 157 (157)
+-|++.+.-.|+..| ..+||.|+|||
T Consensus 124 Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDAD 169 (381)
T PF09488_consen 124 AFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDAD 169 (381)
T ss_dssp HHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TT
T ss_pred HHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeecc
Confidence 238888888887655 56899999998
No 67
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=96.70 E-value=0.018 Score=46.80 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCch----HH-HHHh---c--CCCEEEEEcCC-----
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPS----DG-EELE---R--IEKVSVLRNDK----- 131 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t----~~-~~~~---~--~~~v~vi~~~~----- 131 (157)
....||||+.||... +|+.++.--+... -||||-|.+..+. .+ ..+. + ...+-++|+..
T Consensus 51 ~~mAIVVP~KdE~l~----lleGVL~gIPh~c--~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r~~i~vHQkDp~la~ 124 (393)
T PRK14503 51 GRMAIVVPVKNERLK----LLEGVLKGIPHEC--PIIVVSNSKREPPDRFKLEVDLVRHFYRLTQRPIIIVHQKDPGLAE 124 (393)
T ss_pred hCcEEEEEcCCCchh----HHhhHhhcCCCCC--eEEEEeCCCCCCchHHHHHHHHHHHHHhhhcCceEEEEcCCHHHHH
Confidence 468999999999863 5666666665544 8888888766332 11 1121 1 12344554422
Q ss_pred -----------------CCCHHHHHHHHHHHc---CCCEEEEEcCC
Q psy3172 132 -----------------REGLMRSRVKGADAA---TAPVLTFLDSH 157 (157)
Q Consensus 132 -----------------n~G~~~a~n~g~~~a---~gd~i~flDa~ 157 (157)
+-|++.+.-.|+..| ..+||.|+|||
T Consensus 125 Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDAD 170 (393)
T PRK14503 125 ALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDAD 170 (393)
T ss_pred HHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecc
Confidence 137777777776555 46899999998
No 68
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=96.69 E-value=0.019 Score=46.44 Aligned_cols=85 Identities=19% Similarity=0.326 Sum_probs=54.9
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCch----HH-HHHh---c--CCCEEEEEcCC-----
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPS----DG-EELE---R--IEKVSVLRNDK----- 131 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t----~~-~~~~---~--~~~v~vi~~~~----- 131 (157)
....||||+.||... +|+.++.--+... -||||-|.+..+. .+ ..+. + ...+-++|+..
T Consensus 50 ~~maIVVP~KdE~l~----lleGVL~gIPh~c--~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la~ 123 (381)
T TIGR02460 50 GKTAIVVPVKNEKLH----LLEGVLSGIPHEC--PIIIVSNSKREPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALAE 123 (381)
T ss_pred hCcEEEEEcCCCchh----HHhhHhhcCCCCC--eEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHH
Confidence 468999999999863 5566666665544 8888888876432 11 1111 2 23344554422
Q ss_pred -----------------CCCHHHHHHHHHHHc---CCCEEEEEcCC
Q psy3172 132 -----------------REGLMRSRVKGADAA---TAPVLTFLDSH 157 (157)
Q Consensus 132 -----------------n~G~~~a~n~g~~~a---~gd~i~flDa~ 157 (157)
+-|++.+.-.|+..| ..+||.|+|||
T Consensus 124 Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaD 169 (381)
T TIGR02460 124 AFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDAD 169 (381)
T ss_pred HHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecc
Confidence 137777777776555 56899999998
No 69
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=96.63 E-value=0.037 Score=43.51 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=62.4
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCC--Cch---HHHHHh----------cCCCEEEEEc
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSD--DPS---DGEELE----------RIEKVSVLRN 129 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~--d~t---~~~~~~----------~~~~v~vi~~ 129 (157)
..++|-|++|..|.+ +++.+-++.|...+||.-...+-++.+.++ |.+ ++..+. .+..+.+++.
T Consensus 23 ~~e~VLILtplrna~-~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 23 NKESVLILTPLRNAA-SFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred cCCeEEEEEecCCch-HHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 367899999999988 699999999999999976446644444444 444 222221 1335666654
Q ss_pred CCC--------------------CCHHHHHHHHHHHcC---CCEEEEEcCC
Q psy3172 130 DKR--------------------EGLMRSRVKGADAAT---APVLTFLDSH 157 (157)
Q Consensus 130 ~~n--------------------~G~~~a~n~g~~~a~---gd~i~flDa~ 157 (157)
+-. .-.+.|||..+..+- .+|++|+|||
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaD 152 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDAD 152 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecC
Confidence 321 124667788777663 4899999998
No 70
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.39 E-value=0.016 Score=45.44 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCchH--HHHHHHH--HHHhhCCCCCccEEEEEeCCCCCch-HHHHHhcCCCEEEEEcCCC---CCHHH
Q psy3172 66 LPATSVIITFHNEARS--ALLRSVV--SIINRTPAHLLKEIILVDDFSDDPS-DGEELERIEKVSVLRNDKR---EGLMR 137 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~--~l~~~l~--sl~~q~~~~~~~eIivvddgS~d~t-~~~~~~~~~~v~vi~~~~n---~G~~~ 137 (157)
|+++++|||+-...+. .-.+.+. +++.--.+....+||+++..+.-.. +...+...+++-++..... ...+.
T Consensus 1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~ 80 (346)
T COG4092 1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMDRLIRSYIDPMPRVLYLDFGSPEPFASETI 80 (346)
T ss_pred CCCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHHHHHHHHhccccceEEEecCCCccccchhh
Confidence 4678889998643211 2233333 2222111122238888887765332 3344556677666654222 12367
Q ss_pred HHHHHHHHcC----CCEEEEEcCC
Q psy3172 138 SRVKGADAAT----APVLTFLDSH 157 (157)
Q Consensus 138 a~n~g~~~a~----gd~i~flDa~ 157 (157)
.+|.|+.++. +++|+|||+|
T Consensus 81 c~n~ga~Ysh~~~~Sn~vlFlDvD 104 (346)
T COG4092 81 CANNGADYSHEKCESNLVLFLDVD 104 (346)
T ss_pred hhhccchhhhccccccEEEEEecc
Confidence 8899998887 8999999987
No 71
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=96.37 E-value=0.012 Score=50.48 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=37.6
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCC
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFS 109 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS 109 (157)
+.+-..||||+|.+..|+++|+|+..++|++-.+-|+||.||-
T Consensus 25 ~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~ 67 (527)
T PF03142_consen 25 KFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGM 67 (527)
T ss_pred ceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcE
Confidence 3466799999999889999999999999998888888998874
No 72
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.74 E-value=0.093 Score=46.36 Aligned_cols=85 Identities=13% Similarity=0.280 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCch----HH-HHHh---c--CCCEEEEEcCC-----
Q psy3172 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPS----DG-EELE---R--IEKVSVLRNDK----- 131 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t----~~-~~~~---~--~~~v~vi~~~~----- 131 (157)
....||||+.||... +|+.++.--+... -||||-|.+..+. .+ ..+. + ...+-++|+..
T Consensus 55 ~~~aivvp~k~e~~~----~~~gvl~~ip~~c--~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~~~~~vhq~dp~~a~ 128 (694)
T PRK14502 55 KKMAIVLPIKDEDLK----VFEGVLSGIPHDC--LMIVISNSSKQEVDNFKNEKDIVNRFCRITHRQAIVVHQKNPELAN 128 (694)
T ss_pred hCcEEEEEcCCCchh----HHhhHhhcCCCCC--eEEEEeCCCCCchHHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHH
Confidence 468999999999863 5666676666554 8888888776331 11 1111 1 12344444422
Q ss_pred -----------------CCCHHHHHHHHHHHc---CCCEEEEEcCC
Q psy3172 132 -----------------REGLMRSRVKGADAA---TAPVLTFLDSH 157 (157)
Q Consensus 132 -----------------n~G~~~a~n~g~~~a---~gd~i~flDa~ 157 (157)
+-|++.+.-.|+..| ..+||.|+|||
T Consensus 129 a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidad 174 (694)
T PRK14502 129 AIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTD 174 (694)
T ss_pred HHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeecc
Confidence 237778888886655 46899999998
No 73
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=95.27 E-value=0.23 Score=35.13 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred CcEEEEEEecCCchHHHHHHHH---HHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Q psy3172 67 PATSVIITFHNEARSALLRSVV---SIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGA 143 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~l~---sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~ 143 (157)
-++.||||.+|... .|...|. .++....-.+ .|+||.-..+ ..+..|.-.|.|.
T Consensus 47 ~kvAiIIPyRdR~~-hL~~fl~~l~~~L~rQ~~~y--~I~vieQ~~~--------------------~~FNRg~L~NvGf 103 (136)
T PF13733_consen 47 HKVAIIIPYRDREE-HLRIFLPHLHPFLQRQQLDY--RIFVIEQVDN--------------------GPFNRGKLMNVGF 103 (136)
T ss_dssp -EEEEEEEESS-HH-HHHHHHHHHHHHHHHTT-EE--EEEEEEE-SS--------------------S---HHHHHHHHH
T ss_pred cceEEEEEeCCHHH-HHHHHHHHHHHHHhhCcceE--EEEEEeeccC--------------------CCCchhhhhhHHH
Confidence 37999999999884 5555554 4444332234 8888865422 2345778888888
Q ss_pred HHc----CCCEEEEEcCC
Q psy3172 144 DAA----TAPVLTFLDSH 157 (157)
Q Consensus 144 ~~a----~gd~i~flDa~ 157 (157)
..| ..+.++|-|-|
T Consensus 104 ~eA~~~~~~dc~ifHDVD 121 (136)
T PF13733_consen 104 LEALKDDDFDCFIFHDVD 121 (136)
T ss_dssp HHHHHHS--SEEEEE-TT
T ss_pred HHHhhccCCCEEEEeccc
Confidence 777 35788888866
No 74
>PLN02458 transferase, transferring glycosyl groups
Probab=95.15 E-value=0.19 Score=40.51 Aligned_cols=89 Identities=16% Similarity=0.130 Sum_probs=54.5
Q ss_pred CCcEEEEEEecCC-c-hH-HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCC-CEEEEEcCCCC-----CHH
Q psy3172 66 LPATSVIITFHNE-A-RS-ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIE-KVSVLRNDKRE-----GLM 136 (157)
Q Consensus 66 ~p~vSiIIp~yn~-~-~~-~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~-~v~vi~~~~n~-----G~~ 136 (157)
.+.|-||.|||.. . +. .|-++- ..+...++++ ..|||+|++........+.+.. ..+.+..+.+. ...
T Consensus 111 ~rlIivVTPTY~rR~~Q~a~LTRLa-hTL~lVp~pL--~WIVVEd~~~t~~va~lLrrsGl~y~HL~~k~~~~~~~~r~~ 187 (346)
T PLN02458 111 RRLVIIVTPISTKDRYQGVLLRRLA-NTLRLVPPPL--LWIVVEGQSDSEEVSEMLRKTGIMYRHLVFKENFTDPEAELD 187 (346)
T ss_pred CceEEEECCCCCCcchhHHHHHHHH-HHHhcCCCCc--eEEEEeCCCCCHHHHHHHHHcCCceEEeccCCCCCCccchhH
Confidence 4579999999973 2 22 444443 4444555567 9999999886665555555422 33333333333 124
Q ss_pred HHHHHHHHHcC----CCEEEEEcCC
Q psy3172 137 RSRVKGADAAT----APVLTFLDSH 157 (157)
Q Consensus 137 ~a~n~g~~~a~----gd~i~flDa~ 157 (157)
..||.|++..+ .-+|.|.|-|
T Consensus 188 ~QRN~AL~~IR~h~l~GVVyFADDd 212 (346)
T PLN02458 188 HQRNLALRHIEHHKLSGIVHFAGLS 212 (346)
T ss_pred HHHHHHHHHHHhcCcCceEEEccCC
Confidence 56999988774 3478888764
No 75
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=95.08 E-value=0.12 Score=43.41 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC-CCEEEEE
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI-EKVSVLR 128 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~-~~v~vi~ 128 (157)
.+.+-|+|.++|.. .+|.+||++|+......-...|+|-.||+...+.. .+..+ ..++.++
T Consensus 92 ~~~~pVlV~AcNRp-~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~-vi~~y~~~v~~i~ 153 (434)
T PF03071_consen 92 EPVIPVLVFACNRP-DYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAE-VIKSYGDQVTYIQ 153 (434)
T ss_dssp -----EEEEESS-T-T-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHH-HHHGGGGGSEEEE
T ss_pred CCcceEEEEecCCc-HHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHH-HHHHhhhhheeee
Confidence 56788999999999 59999999999975322223899999998766543 33333 3344444
No 76
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=95.08 E-value=0.27 Score=37.64 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=51.1
Q ss_pred CcEEEEEEecCCchH--HHHHHHHHHHhhCCCCCccEEEEEeCCC-CCchHHHHHhcCC-CEEEEEcCCC--------CC
Q psy3172 67 PATSVIITFHNEARS--ALLRSVVSIINRTPAHLLKEIILVDDFS-DDPSDGEELERIE-KVSVLRNDKR--------EG 134 (157)
Q Consensus 67 p~vSiIIp~yn~~~~--~l~~~l~sl~~q~~~~~~~eIivvddgS-~d~t~~~~~~~~~-~v~vi~~~~n--------~G 134 (157)
|.+-+|.|+|....+ .|-++-+.+ ...+ ++ ..|||+|+. ..+.....+.+.. ..+.+..+.+ .|
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL-~lVp-~l--~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~~~~~~~~~~rg 76 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTL-RLVP-PL--HWIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDPTWLKPRG 76 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHH-hcCC-ce--EEEEEeCCCCCCHHHHHHHHHcCCceEEeccCCCCCcccCCccc
Confidence 468899999977643 444444443 3333 67 999999998 4444445554322 2333322222 23
Q ss_pred HHHHHHHHHHHcC-------CCEEEEEcCC
Q psy3172 135 LMRSRVKGADAAT-------APVLTFLDSH 157 (157)
Q Consensus 135 ~~~a~n~g~~~a~-------gd~i~flDa~ 157 (157)
...||.|++..+ .-++.|.|-|
T Consensus 77 -~~qRn~AL~~ir~~~~~~~~GVVyFADDd 105 (223)
T cd00218 77 -VEQRNLALRWIREHLSAKLDGVVYFADDD 105 (223)
T ss_pred -HHHHHHHHHHHHhccccCcceEEEEccCC
Confidence 457999987663 2478888764
No 77
>KOG1476|consensus
Probab=93.78 E-value=1.3 Score=35.69 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=52.1
Q ss_pred CCcEEEEEEecCCchH--HHHHHHHHHHhhCCCCCccEEEEEeCCC-CCchHHHHHhcC-CCEEEEEcCCCCC-H----H
Q psy3172 66 LPATSVIITFHNEARS--ALLRSVVSIINRTPAHLLKEIILVDDFS-DDPSDGEELERI-EKVSVLRNDKREG-L----M 136 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~--~l~~~l~sl~~q~~~~~~~eIivvddgS-~d~t~~~~~~~~-~~v~vi~~~~n~G-~----~ 136 (157)
.|.|-||.|+|....+ .|-+ +..-+.+.. ++ ..|||.||+ ..+.....+++. -..+.+..+...+ + -
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtR-lanTL~~V~-nL--hWIVVEd~~~~~p~v~~~L~rtgl~ythl~~~t~~~~~~~rg~ 161 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTR-LANTLRLVP-NL--HWIVVEDGEGTTPEVSGILRRTGLPYTHLVHKTPMGYKARRGW 161 (330)
T ss_pred CccEEEEcccccchhHHHHHHH-HHHHHhhcC-Ce--eEEEEecCCCCCHHHHHHHHHcCCceEEEeccCCCCCccccch
Confidence 5789999999987642 2222 233444444 77 999999994 444444555532 2333333434433 2 4
Q ss_pred HHHHHHHHHcC---------CCEEEEEcCC
Q psy3172 137 RSRVKGADAAT---------APVLTFLDSH 157 (157)
Q Consensus 137 ~a~n~g~~~a~---------gd~i~flDa~ 157 (157)
..||.|++..+ .-++.|-|-|
T Consensus 162 ~qRn~aL~~ir~~~~~~~~~~GVVyFADDd 191 (330)
T KOG1476|consen 162 EQRNMALRWIRSRILRHHKLEGVVYFADDD 191 (330)
T ss_pred hHHHHHHHHHHHhcccccccceEEEEccCC
Confidence 57899887654 2366666543
No 78
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=93.20 E-value=0.66 Score=35.80 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEeCCCCCch----HHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc---CCCEE--EE
Q psy3172 83 LLRSVVSIINRTPAHLLKEIILVDDFSDDPS----DGEELERIEKVSVLRNDKREGLMRSRVKGADAA---TAPVL--TF 153 (157)
Q Consensus 83 l~~~l~sl~~q~~~~~~~eIivvddgS~d~t----~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a---~gd~i--~f 153 (157)
-.-||.|+..||.++| .++|+-+...... +....+..++++++..+.. ....+...+++.+ .++++ .-
T Consensus 44 e~~~LpSl~~QTd~dF--~~lv~~~~~~P~~~~~rL~~l~~~~p~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~R 120 (234)
T PF11316_consen 44 ETYCLPSLRAQTDQDF--TWLVLFDDDLPEPYRERLRDLLADYPQFRIVFRPPG-PHRDAMRRAINAARRDGADPVLQFR 120 (234)
T ss_pred HHHHhhHHHhccCCCe--EEEEEECCCCCHHHHHHHHHHhccCCCcEEEecCCc-hHHHHHHHHHhhhccCCCCEEEEEE
Confidence 3448899999999999 8888555544443 4455667888888876543 3555555554333 34443 33
Q ss_pred EcCC
Q psy3172 154 LDSH 157 (157)
Q Consensus 154 lDa~ 157 (157)
||.|
T Consensus 121 LDdD 124 (234)
T PF11316_consen 121 LDDD 124 (234)
T ss_pred ECCc
Confidence 5665
No 79
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=92.93 E-value=0.76 Score=35.17 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=42.4
Q ss_pred cEEEEEEecCCchHHHHHHHHH---HHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Q psy3172 68 ATSVIITFHNEARSALLRSVVS---IINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGAD 144 (157)
Q Consensus 68 ~vSiIIp~yn~~~~~l~~~l~s---l~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~ 144 (157)
+|+||||.++... .|...+.. .+....-.+ .|+|+..-. ...+..+..+|.|..
T Consensus 3 ~~aiivpyr~R~~-~l~~~l~~~~~~L~rq~~~~--~i~vi~Q~~--------------------~~~FNR~~llNvG~~ 59 (219)
T cd00899 3 KVAIIVPFRNRFE-HLLIFLPHLHPFLQRQQLDY--RIFVIEQVG--------------------NFRFNRAKLLNVGFL 59 (219)
T ss_pred ceEEEEecCCHHH-HHHHHHHHHHHHHHhcCCcE--EEEEEEecC--------------------CccchhhhhhhHHHH
Confidence 5899999999884 66555543 343332233 676665221 123567788888876
Q ss_pred Hc----CCCEEEEEcCC
Q psy3172 145 AA----TAPVLTFLDSH 157 (157)
Q Consensus 145 ~a----~gd~i~flDa~ 157 (157)
.| ..++++|-|-|
T Consensus 60 ~a~k~~~~dc~i~hDVD 76 (219)
T cd00899 60 EALKDGDWDCFIFHDVD 76 (219)
T ss_pred HHhhcCCccEEEEeccc
Confidence 66 25678888765
No 80
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=92.69 E-value=1.6 Score=35.57 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=57.0
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCch--HH-------------------HHHh-------
Q psy3172 68 ATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPS--DG-------------------EELE------- 119 (157)
Q Consensus 68 ~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t--~~-------------------~~~~------- 119 (157)
+|.|.|..|-.. .+..+|.+++++.......-|-|++-...... +. ....
T Consensus 1 tIFvsiasyRD~--~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 78 (343)
T PF11397_consen 1 TIFVSIASYRDP--ECAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEW 78 (343)
T ss_pred CEEEEEeeecCc--hHHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccccccc
Confidence 477899999775 57889999999873333224444443222211 10 0000
Q ss_pred -------cCCCEEEEEc--CCCCCHHHHHHHHHHHcCCC-EEEEEcCC
Q psy3172 120 -------RIEKVSVLRN--DKREGLMRSRVKGADAATAP-VLTFLDSH 157 (157)
Q Consensus 120 -------~~~~v~vi~~--~~n~G~~~a~n~g~~~a~gd-~i~flDa~ 157 (157)
...+|++++. ....|...||..+.+.-+|| |++-+|||
T Consensus 79 ~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH 126 (343)
T PF11397_consen 79 PDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSH 126 (343)
T ss_pred ccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEecc
Confidence 1235666654 45689999999999988875 99999998
No 81
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.54 E-value=1.3 Score=38.28 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=48.4
Q ss_pred cEEEEEEecCCchH----HHHHHHHHHHhhC-CCCCccEEEEEeCCCCCch-HHHH---------HhcCCCEEEEEcCCC
Q psy3172 68 ATSVIITFHNEARS----ALLRSVVSIINRT-PAHLLKEIILVDDFSDDPS-DGEE---------LERIEKVSVLRNDKR 132 (157)
Q Consensus 68 ~vSiIIp~yn~~~~----~l~~~l~sl~~q~-~~~~~~eIivvddgS~d~t-~~~~---------~~~~~~v~vi~~~~n 132 (157)
...|++|+|||... -|+.+-+|+.+-. -.+| .+.|+.|..+.+. +.+. .....+|-+-+..+|
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~F--D~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~n 222 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHF--DFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRRRRN 222 (736)
T ss_pred ceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccc--eEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehHhhh
Confidence 48999999999865 4555556665543 4567 8888877655432 1111 112344544444444
Q ss_pred CCHHHHHHHHHHHc-----CCCEEEEEcCC
Q psy3172 133 EGLMRSRVKGADAA-----TAPVLTFLDSH 157 (157)
Q Consensus 133 ~G~~~a~n~g~~~a-----~gd~i~flDa~ 157 (157)
.+.-+ =|. ..-+ ..++++.||||
T Consensus 223 ~~RKa-GNI-aDfcrRwG~~Y~~MlVLDAD 250 (736)
T COG2943 223 VKRKA-GNI-ADFCRRWGSAYSYMLVLDAD 250 (736)
T ss_pred hcccc-cCH-HHHHHHhCcccceEEEeecc
Confidence 33111 121 1222 35899999998
No 82
>KOG3916|consensus
Probab=92.42 E-value=1.6 Score=35.59 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=41.1
Q ss_pred CcEEEEEEecCCchHHHHHH---HHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Q psy3172 67 PATSVIITFHNEARSALLRS---VVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGA 143 (157)
Q Consensus 67 p~vSiIIp~yn~~~~~l~~~---l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~ 143 (157)
-+|.||||..|.++ .|.-. |+.++.+.--.+ .|+||.-..++ .+..+.-.|.|.
T Consensus 151 ~kvAIIIPfR~Re~-HL~~~l~~LhP~LqrQrL~y--~iyVieQ~g~~--------------------~FNRakL~NVGf 207 (372)
T KOG3916|consen 151 HKVAIIIPFRNREE-HLRYLLHHLHPFLQRQRLDY--RIYVIEQAGNK--------------------PFNRAKLLNVGF 207 (372)
T ss_pred ceeEEEeecccHHH-HHHHHHHHhhHHHHhhhhce--eEEEEEecCCC--------------------cccHHHhhhhHH
Confidence 37999999999985 55444 445554433244 88888755443 234556667776
Q ss_pred HHcC----CCEEEEEcCC
Q psy3172 144 DAAT----APVLTFLDSH 157 (157)
Q Consensus 144 ~~a~----gd~i~flDa~ 157 (157)
..|- -|-++|-|-|
T Consensus 208 ~eAlkd~~wdCfIFHDVD 225 (372)
T KOG3916|consen 208 LEALKDYGWDCFIFHDVD 225 (372)
T ss_pred HHHHHhcCCCEEEEeccc
Confidence 6552 2446665543
No 83
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=91.85 E-value=3 Score=35.79 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=57.2
Q ss_pred CCCCcEEEEEEecCC-chHHHHHHHHHHHh---hCCCCCccEEEEEeCCC-CCch--------HHHHHhcC--CCEEEEE
Q psy3172 64 RDLPATSVIITFHNE-ARSALLRSVVSIIN---RTPAHLLKEIILVDDFS-DDPS--------DGEELERI--EKVSVLR 128 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~-~~~~l~~~l~sl~~---q~~~~~~~eIivvddgS-~d~t--------~~~~~~~~--~~v~vi~ 128 (157)
.+...|-||||..+. . ..+.+-|+.... ++..+. .++||-.++ .+.. +.+...++ .++.++.
T Consensus 244 ~~~~~V~iIvPl~~r~~-~~~~~Fl~~~~~~~l~~~~~~--~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~ 320 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREA-DWFRRFLENFEKVCLETDDNV--FLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWIS 320 (499)
T ss_pred cCCCEEEEEEEecCccH-HHHHHHHHHHHHHhcccCCce--EEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEE
Confidence 334689999999998 5 466655554333 233333 555555544 3321 11222233 4688888
Q ss_pred cC-CCCCHHHHHHHHHHHcCC-CEEEEEcCC
Q psy3172 129 ND-KREGLMRSRVKGADAATA-PVLTFLDSH 157 (157)
Q Consensus 129 ~~-~n~G~~~a~n~g~~~a~g-d~i~flDa~ 157 (157)
.. +++..+.|+..|++.... ++++|.|-|
T Consensus 321 ~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd 351 (499)
T PF05679_consen 321 VKTGEFSRGAALDVGAKKFPPDSLLFFCDVD 351 (499)
T ss_pred ecCCCccHHHHHHhhcccCCCCcEEEEEeCC
Confidence 87 888899999999987754 477777754
No 84
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=91.24 E-value=3.2 Score=32.90 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=57.4
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER----IEKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~----~~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
++|+|+.. .+.-+|..+...-- .+|+||-.--+.......+-. ...+.++.+++..|++.|.-.|.....
T Consensus 25 LlpV~~KP--mi~y~l~~L~~aGI----~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~ 98 (286)
T COG1209 25 LLPVYDKP--MIYYPLETLMLAGI----RDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVG 98 (286)
T ss_pred cceecCcc--hhHhHHHHHHHcCC----ceEEEEecCCchhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhcC
Confidence 78999876 67778888777653 278777654444445455544 457999999999999999999999997
Q ss_pred -CCEEEEE
Q psy3172 148 -APVLTFL 154 (157)
Q Consensus 148 -gd~i~fl 154 (157)
.+++++|
T Consensus 99 ~~~f~l~L 106 (286)
T COG1209 99 DDDFVLYL 106 (286)
T ss_pred CCceEEEe
Confidence 6677765
No 85
>KOG3588|consensus
Probab=89.71 E-value=3.3 Score=34.36 Aligned_cols=89 Identities=21% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCC-CchHH-----HHHhcCCCEEEEEcCCCCCHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSD-DPSDG-----EELERIEKVSVLRNDKREGLMRS 138 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~-d~t~~-----~~~~~~~~v~vi~~~~n~G~~~a 138 (157)
+.|-+.+|+|...+. ..+.+...++......+. +++|+-=|++ ++... ...+.++++.++...+.+..+.|
T Consensus 227 ~~pgih~i~pl~gr~-~~f~rf~q~~c~~~d~~l--~l~vv~f~~se~e~ak~e~~tslra~f~~~q~l~lngeFSRa~a 303 (494)
T KOG3588|consen 227 EDPGIHMIMPLRGRA-AIFARFAQSICARGDDRL--ALSVVYFGYSEDEMAKRETITSLRASFIPVQFLGLNGEFSRAKA 303 (494)
T ss_pred cCCCceEEEeccchH-HHhhhhhHHHhccCCCce--EEEEEEecCCChHHHhhhHHHHHhhcCCceEEecccchhhhhHH
Confidence 467899999999998 588888888877766666 6666655543 33222 23346778888887777888999
Q ss_pred HHHHHHHcCCCEEEE-EcC
Q psy3172 139 RVKGADAATAPVLTF-LDS 156 (157)
Q Consensus 139 ~n~g~~~a~gd~i~f-lDa 156 (157)
+-.|++.-+.+.++| .|-
T Consensus 304 L~vGAe~~~~nvLLFfcDV 322 (494)
T KOG3588|consen 304 LMVGAETLNANVLLFFCDV 322 (494)
T ss_pred HHhhHHHhccceeEEEecc
Confidence 999999998776554 453
No 86
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=89.04 E-value=2.1 Score=34.66 Aligned_cols=84 Identities=18% Similarity=0.094 Sum_probs=56.3
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHH---HHhcCCCEEEE--------EcCCCC--C
Q psy3172 68 ATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGE---ELERIEKVSVL--------RNDKRE--G 134 (157)
Q Consensus 68 ~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~---~~~~~~~v~vi--------~~~~n~--G 134 (157)
-.+..|-+.||+. +|.++|+|++..-. |.|+.=+.|+|+|.+. ...++|...-+ ..++.. .
T Consensus 88 ~~~~~iRvKnE~~-tl~~si~S~Lpai~-----~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~ 161 (347)
T PF06306_consen 88 NPWAFIRVKNEAM-TLAESIESILPAID-----EGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENS 161 (347)
T ss_pred CcceEEEEcchhh-hHHHHHHHHHHHHh-----ccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhhh
Confidence 4788999999995 99999999998754 8888888889988443 33355542211 111110 1
Q ss_pred HHHHHHHHHHHc-CCCEEEEEcCC
Q psy3172 135 LMRSRVKGADAA-TAPVLTFLDSH 157 (157)
Q Consensus 135 ~~~a~n~g~~~a-~gd~i~flDa~ 157 (157)
+..=.|.++... +.+|++=+|+|
T Consensus 162 l~~YYNy~ls~ipk~~w~iKID~D 185 (347)
T PF06306_consen 162 LYNYYNYVLSFIPKNEWAIKIDAD 185 (347)
T ss_pred hhhhhhhhhcccccceEEEEeccc
Confidence 333445555554 57999999987
No 87
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=86.92 E-value=9.5 Score=28.32 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=49.6
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC--CC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT--AP 149 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~--gd 149 (157)
++|.-+. ..+..+|+++..... . +|++|-... ...+...+.. .+++++..+...|.+.+.-.|+.... .+
T Consensus 20 l~~v~gk--pli~~~i~~l~~~~i--~--~i~iv~~~~-~~~i~~~~~~-~~~~~~~~~~~~g~~~ai~~a~~~~~~~~~ 91 (229)
T cd02540 20 LHPLAGK--PMLEHVLDAARALGP--D--RIVVVVGHG-AEQVKKALAN-PNVEFVLQEEQLGTGHAVKQALPALKDFEG 91 (229)
T ss_pred cceeCCc--cHHHHHHHHHHhCCC--C--eEEEEECCC-HHHHHHHhCC-CCcEEEECCCCCCCHHHHHHHHHhhccCCC
Confidence 4455443 388888888876532 2 666665322 2333333332 45677776666788888888888765 58
Q ss_pred EEEEEcCC
Q psy3172 150 VLTFLDSH 157 (157)
Q Consensus 150 ~i~flDa~ 157 (157)
.++++++|
T Consensus 92 ~vli~~~D 99 (229)
T cd02540 92 DVLVLYGD 99 (229)
T ss_pred eEEEEeCC
Confidence 88888886
No 88
>PLN02190 cellulose synthase-like protein
Probab=86.78 E-value=2.3 Score=38.11 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCCcEEEEEEecC---CchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH
Q psy3172 65 DLPATSVIITFHN---EARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD 114 (157)
Q Consensus 65 ~~p~vSiIIp~yn---~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~ 114 (157)
+.|.|-|.|+|++ |..-....++.|+++-+||.-+.-+.|-|||.+.-|.
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~ 143 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTY 143 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHH
Confidence 4799999999999 6655888899999999999877788999999998764
No 89
>PLN02893 Cellulose synthase-like protein
Probab=86.05 E-value=1.8 Score=38.73 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=32.1
Q ss_pred cCCCEEEEEcCCCC-----CHHHHHHHHHHH----cCCCEEEEEcCC
Q psy3172 120 RIEKVSVLRNDKRE-----GLMRSRVKGADA----ATAPVLTFLDSH 157 (157)
Q Consensus 120 ~~~~v~vi~~~~n~-----G~~~a~n~g~~~----a~gd~i~flDa~ 157 (157)
..|.+.++..+++. -++.|+|.+++. +.|++|+.+|||
T Consensus 262 ~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD 308 (734)
T PLN02893 262 TMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCD 308 (734)
T ss_pred cCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCC
Confidence 47888888887763 388899999995 689999999998
No 90
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=85.91 E-value=7.4 Score=27.90 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcC-CCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 81 SALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND-KREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 81 ~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~-~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
..|..+++.+... . . +|+|+-+..... . ....++++..+ ...|...+...|++....++++++.+|
T Consensus 27 ~ll~~~i~~l~~~-~--~--~iivv~~~~~~~-----~-~~~~~~~v~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D 93 (181)
T cd02503 27 PLLEHVLERLKPL-V--D--EVVISANRDQER-----Y-ALLGVPVIPDEPPGKGPLAGILAALRAAPADWVLVLACD 93 (181)
T ss_pred EHHHHHHHHHHhh-c--C--EEEEECCCChHH-----H-hhcCCcEeeCCCCCCCCHHHHHHHHHhcCCCeEEEEeCC
Confidence 3778888777654 1 2 777775432211 1 12345666543 456888999999999888999999887
No 91
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=85.24 E-value=12 Score=27.14 Aligned_cols=76 Identities=20% Similarity=0.102 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCc-h-HHHHHhcCCCEEEEEcC-CCCCHHHHHHHHHHHc---CCCE
Q psy3172 77 NEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDP-S-DGEELERIEKVSVLRND-KREGLMRSRVKGADAA---TAPV 150 (157)
Q Consensus 77 n~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~-t-~~~~~~~~~~v~vi~~~-~n~G~~~a~n~g~~~a---~gd~ 150 (157)
+.. ..|..++..++... ..+|+||-...... . +.........+.++..+ ...|.+.+.-.|++.+ ..++
T Consensus 24 ~g~-~ll~~~i~~~~~~~----~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~~d~ 98 (190)
T TIGR03202 24 GET-TLGSASLKTALSSR----LSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQAHSLKCGLRKAEAMGADA 98 (190)
T ss_pred CCc-cHHHHHHHHHHhCC----CCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhHHHHHHHHHHHhccCCCCe
Confidence 444 37777777665432 12777776443221 1 11111123345555433 3457888888899876 4789
Q ss_pred EEEEcCC
Q psy3172 151 LTFLDSH 157 (157)
Q Consensus 151 i~flDa~ 157 (157)
++++++|
T Consensus 99 vlv~~~D 105 (190)
T TIGR03202 99 VVILLAD 105 (190)
T ss_pred EEEEeCC
Confidence 9999887
No 92
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=85.01 E-value=5.8 Score=29.88 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=55.8
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCC----CEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIE----KVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~----~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|..+.. ..|...|+.+..... .++|+|-.+.....+.+.+.... .+.++..+...|.+.|.-.+.....
T Consensus 24 ll~i~g~~-pli~~~l~~l~~~g~----~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~ 98 (248)
T PF00483_consen 24 LLPIGGKY-PLIDYVLENLANAGI----KEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDFIE 98 (248)
T ss_dssp GSEETTEE-EHHHHHHHHHHHTTC----SEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHHHT
T ss_pred cceecCCC-cchhhhhhhhcccCC----ceEEEEEeecccccccccccccccccccceeeecccccchhHHHHHHHHHhh
Confidence 45666663 278888888887543 28666665555455556665443 3778777778899999999998887
Q ss_pred CCE----EEEEcCC
Q psy3172 148 APV----LTFLDSH 157 (157)
Q Consensus 148 gd~----i~flDa~ 157 (157)
.+. ++++.+|
T Consensus 99 ~~~~~~~~lv~~gD 112 (248)
T PF00483_consen 99 EEDDDEDFLVLNGD 112 (248)
T ss_dssp TSEE-SEEEEETTE
T ss_pred hccccceEEEEecc
Confidence 765 7777664
No 93
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=84.94 E-value=9.3 Score=27.97 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=49.9
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|.-+. ..+..+++++..... .+|+|+-+... ..+.+.+... ..+.++..+...|.+.+...++....
T Consensus 23 ll~v~g~--pli~~~l~~l~~~g~----~~i~vv~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~ 95 (217)
T cd04181 23 LLPIAGK--PILEYIIERLARAGI----DEIILVVGYLG-EQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLG 95 (217)
T ss_pred ccEECCe--eHHHHHHHHHHHCCC----CEEEEEeccCH-HHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhcC
Confidence 3444443 378888888777532 27777765432 3333444332 34666665556788889988888876
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
.+.++++++|
T Consensus 96 ~~~~lv~~~D 105 (217)
T cd04181 96 DDDFLVVNGD 105 (217)
T ss_pred CCCEEEEECC
Confidence 6778888776
No 94
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=84.51 E-value=7.2 Score=30.52 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=49.3
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHHHcC---
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER-IEKVSVLRNDKREGLMRSRVKGADAAT--- 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~-~~~v~vi~~~~n~G~~~a~n~g~~~a~--- 147 (157)
.+|..+.. ..|..+++.+..... ..+|+||-+......+...+.. .+.+.++..+...|.+.|.-.++....
T Consensus 26 ll~l~g~~-~li~~~l~~l~~~~~---~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~ep~~~gTa~ai~~a~~~~~~~~ 101 (274)
T cd02509 26 FLKLFGDK-SLLQQTLDRLKGLVP---PDRILVVTNEEYRFLVREQLPEGLPEENIILEPEGRNTAPAIALAALYLAKRD 101 (274)
T ss_pred EeEcCCCC-cHHHHHHHHHhcCCC---CCcEEEEechHHHHHHHHHHhhcCCCceEEECCCCCCcHHHHHHHHHHHHhcC
Confidence 45566644 478888887766532 1277776643221223333333 456777777767788887777766553
Q ss_pred -CCEEEEEcCC
Q psy3172 148 -APVLTFLDSH 157 (157)
Q Consensus 148 -gd~i~flDa~ 157 (157)
.++++++.+|
T Consensus 102 ~~~~vlVl~~D 112 (274)
T cd02509 102 PDAVLLVLPSD 112 (274)
T ss_pred CCCeEEEecch
Confidence 4677777765
No 95
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=83.18 E-value=1.8 Score=35.14 Aligned_cols=84 Identities=13% Similarity=0.078 Sum_probs=47.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHH-------HHhcCCCEEEEEcCC--CCCHHHH
Q psy3172 68 ATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGE-------ELERIEKVSVLRNDK--REGLMRS 138 (157)
Q Consensus 68 ~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~-------~~~~~~~v~vi~~~~--n~G~~~a 138 (157)
.|-||||+-.+....+.+.-+.++ ..+ .+|||-|+.....+.. .+.+..-.+++-.+. .+.-.+.
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~----~~~--hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~~a~ 82 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFF----SPY--HLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKGDAC 82 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhh----cce--eEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccccccch
Confidence 588999998755312222223332 234 9999998876554210 000100011222111 1224568
Q ss_pred HHHHHHHcCCCEEEEEcCC
Q psy3172 139 RVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a~gd~i~flDa~ 157 (157)
||.|.-.++.+|++++|-|
T Consensus 83 R~fGyL~s~~~yivsiDDD 101 (348)
T PF03214_consen 83 RNFGYLVSKKDYIVSIDDD 101 (348)
T ss_pred hhhHhhhcccceEEEEccc
Confidence 9999999999999999965
No 96
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=83.16 E-value=21 Score=28.21 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=51.8
Q ss_pred cEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc----CCCEEEEEcC---C------CCC
Q psy3172 68 ATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER----IEKVSVLRND---K------REG 134 (157)
Q Consensus 68 ~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~----~~~v~vi~~~---~------n~G 134 (157)
.++||....|-. ..+..+|.|++.....++ .+.|++|+-+.+..+...+. ...+.++... . +..
T Consensus 2 ~~~iv~~~~~y~-~~~~~~i~Sil~n~~~~~--~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~ 78 (280)
T cd06431 2 HVAIVCAGYNAS-RDVVTLVKSVLFYRRNPL--HFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKH 78 (280)
T ss_pred EEEEEEccCCcH-HHHHHHHHHHHHcCCCCE--EEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccc
Confidence 367777775545 488899999998865456 99999998776654433321 2234444432 1 111
Q ss_pred HHH----HHHHHHHHcC--CCEEEEEcCC
Q psy3172 135 LMR----SRVKGADAAT--APVLTFLDSH 157 (157)
Q Consensus 135 ~~~----a~n~g~~~a~--gd~i~flDa~ 157 (157)
.+. .|-..-+.-. -+=+++||+|
T Consensus 79 ~s~~y~y~RL~ip~llp~~~dkvLYLD~D 107 (280)
T cd06431 79 YSGIYGLMKLVLTEALPSDLEKVIVLDTD 107 (280)
T ss_pred hhhHHHHHHHHHHHhchhhcCEEEEEcCC
Confidence 111 2333333333 5779999997
No 97
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=83.10 E-value=17 Score=27.12 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=48.6
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCC--CCCHHHHHHHHHHHcCCC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDK--REGLMRSRVKGADAATAP 149 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~--n~G~~~a~n~g~~~a~gd 149 (157)
.+|+-+ . ..|...|.++..... .+|+||-.. ....+...+....++.++..+. ..|.+.+...|+... .+
T Consensus 23 l~~~~g-~-~li~~~l~~l~~~gi----~~i~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~-~~ 94 (229)
T cd02523 23 LLEING-K-PLLERQIETLKEAGI----DDIVIVTGY-KKEQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFL-DE 94 (229)
T ss_pred eeeECC-E-EHHHHHHHHHHHCCC----ceEEEEecc-CHHHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHc-CC
Confidence 445544 3 378888888776532 277776553 3333444444435677776543 468888888888887 46
Q ss_pred EEEEEcCC
Q psy3172 150 VLTFLDSH 157 (157)
Q Consensus 150 ~i~flDa~ 157 (157)
.++++.+|
T Consensus 95 ~~lv~~~D 102 (229)
T cd02523 95 DFLLLEGD 102 (229)
T ss_pred CEEEEeCC
Confidence 67777765
No 98
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=82.98 E-value=5.7 Score=28.98 Aligned_cols=69 Identities=10% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCC--CCCHHHHHHHHHHHcCCCEEEEE
Q psy3172 77 NEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDK--REGLMRSRVKGADAATAPVLTFL 154 (157)
Q Consensus 77 n~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~--n~G~~~a~n~g~~~a~gd~i~fl 154 (157)
+.. ..|..+++.+. . . ..+|+|+-+.. . ..+.. ..++++.... ..|...+...|++....++++++
T Consensus 28 ~g~-~ll~~~i~~l~-~---~-~~~i~vv~~~~--~---~~~~~-~~~~~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~ 95 (193)
T PRK00317 28 NGK-PLIQHVIERLA-P---Q-VDEIVINANRN--L---ARYAA-FGLPVIPDSLADFPGPLAGILAGLKQARTEWVLVV 95 (193)
T ss_pred CCE-EHHHHHHHHHh-h---h-CCEEEEECCCC--h---HHHHh-cCCcEEeCCCCCCCCCHHHHHHHHHhcCCCeEEEE
Confidence 444 37888888776 1 1 22787774321 1 11222 2344554322 35777888889988888999999
Q ss_pred cCC
Q psy3172 155 DSH 157 (157)
Q Consensus 155 Da~ 157 (157)
++|
T Consensus 96 ~~D 98 (193)
T PRK00317 96 PCD 98 (193)
T ss_pred cCC
Confidence 987
No 99
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=82.56 E-value=15 Score=26.08 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcC-CCCCHHHHHHHHHHHcC--CCEEEEEcCC
Q psy3172 81 SALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND-KREGLMRSRVKGADAAT--APVLTFLDSH 157 (157)
Q Consensus 81 ~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~-~n~G~~~a~n~g~~~a~--gd~i~flDa~ 157 (157)
..+...++.+.... ..+|+|+-+... ....... ....+.++..+ ...|...+...|++.+. .++++++.+|
T Consensus 27 ~li~~~i~~l~~~~----~~~i~vv~~~~~-~~~~~~~-~~~~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D 100 (186)
T cd04182 27 PLLRHALDAALAAG----LSRVIVVLGAEA-DAVRAAL-AGLPVVVVINPDWEEGMSSSLAAGLEALPADADAVLILLAD 100 (186)
T ss_pred eHHHHHHHHHHhCC----CCcEEEECCCcH-HHHHHHh-cCCCeEEEeCCChhhCHHHHHHHHHHhccccCCEEEEEeCC
Confidence 37888888776652 126776643321 2222222 22345545443 34588889999999886 7899998886
No 100
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=82.55 E-value=11 Score=26.95 Aligned_cols=72 Identities=21% Similarity=0.151 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCC-CCCHHHHHHHHHH-HcCCCEEEEEcCC
Q psy3172 81 SALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDK-REGLMRSRVKGAD-AATAPVLTFLDSH 157 (157)
Q Consensus 81 ~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~-n~G~~~a~n~g~~-~a~gd~i~flDa~ 157 (157)
..|...++.+..... . +|+||-+..... ....+....++.++.... ..|...+...|++ ....++++++++|
T Consensus 26 pll~~~i~~l~~~~~--~--~iivv~~~~~~~-~~~~~~~~~~v~~v~~~~~~~g~~~si~~~l~~~~~~~~vlv~~~D 99 (188)
T TIGR03310 26 TILEHVVDNALRLFF--D--EVILVLGHEADE-LVALLANHSNITLVHNPQYAEGQSSSIKLGLELPVQSDGYLFLLGD 99 (188)
T ss_pred eHHHHHHHHHHHcCC--C--cEEEEeCCcHHH-HHHHhccCCCeEEEECcChhcCHHHHHHHHhcCCCCCCEEEEEeCC
Confidence 378888877776532 2 666664433222 222333233566665432 3577788888887 4567899999887
No 101
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=81.55 E-value=5.6 Score=30.87 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=45.4
Q ss_pred EEEEEEe-cCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCc-hHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc
Q psy3172 69 TSVIITF-HNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDP-SDGEELERIEKVSVLRNDKREGLMRSRVKGADAA 146 (157)
Q Consensus 69 vSiIIp~-yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~-t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a 146 (157)
.+|||.+ |... ..|.+.|.++..... ..||+||=++.... ...........|++++.+.| .-..|-.-....
T Consensus 1 fTvvi~t~~~R~-~~L~~~l~~l~~~~~---l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~n--sLnnRF~p~~~i 74 (247)
T PF09258_consen 1 FTVVINTSYKRS-DLLKRLLRHLASSPS---LRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRN--SLNNRFLPDPEI 74 (247)
T ss_dssp EEEEEEE-SS-H-HHHHHHHHHHTTSTT---EEEEEEEEE-TS--THHHHHT---S-EEEEEESSH--HGGGGGS--TT-
T ss_pred CEEEEEecccch-HHHHHHHHHHHcCCC---CCeEEEEeCCCCCCCcccccCCCCceEEEEecCCc--cHHhcCcCcccc
Confidence 4789999 8887 599999999843332 44888874443332 22233334467888876543 112222234556
Q ss_pred CCCEEEEEcCC
Q psy3172 147 TAPVLTFLDSH 157 (157)
Q Consensus 147 ~gd~i~flDa~ 157 (157)
+.+.|+.+|-|
T Consensus 75 ~T~AVl~~DDD 85 (247)
T PF09258_consen 75 ETDAVLSLDDD 85 (247)
T ss_dssp -SSEEEEEETT
T ss_pred CcceEEEecCC
Confidence 78899999865
No 102
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=80.95 E-value=16 Score=25.44 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred EEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcC-CCCCHHHHHHHHHHHc-CCCE
Q psy3172 73 ITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND-KREGLMRSRVKGADAA-TAPV 150 (157)
Q Consensus 73 Ip~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~-~n~G~~~a~n~g~~~a-~gd~ 150 (157)
++. +.. ..+..+++.+..... .+|+|+-.. +.....+.. .+++++..+ ...|...+.-.|+... ..+.
T Consensus 19 ~~i-~g~-~li~~~l~~l~~~~~----~~Ivvv~~~---~~~~~~~~~-~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~ 88 (160)
T PF12804_consen 19 LPI-GGK-PLIERVLEALREAGV----DDIVVVTGE---EEIYEYLER-YGIKVVVDPEPGQGPLASLLAALSQLPSSEP 88 (160)
T ss_dssp SEE-TTE-EHHHHHHHHHHHHTE----SEEEEEEST---HHHHHHHTT-TTSEEEE-STSSCSHHHHHHHHHHTSTTSSE
T ss_pred eeE-CCc-cHHHHHHHHhhccCC----ceEEEecCh---HHHHHHHhc-cCceEEEeccccCChHHHHHHHHHhcccCCC
Confidence 445 555 488888888877742 288887655 223233333 357776654 4689999999999999 8899
Q ss_pred EEEEcCC
Q psy3172 151 LTFLDSH 157 (157)
Q Consensus 151 i~flDa~ 157 (157)
++++-+|
T Consensus 89 vlv~~~D 95 (160)
T PF12804_consen 89 VLVLPCD 95 (160)
T ss_dssp EEEEETT
T ss_pred cEEEeCC
Confidence 9998876
No 103
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=78.74 E-value=24 Score=26.10 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=45.0
Q ss_pred CCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcC-CCCCHHHHHHHHHHHcCCCEEEEEc
Q psy3172 77 NEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND-KREGLMRSRVKGADAATAPVLTFLD 155 (157)
Q Consensus 77 n~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~-~n~G~~~a~n~g~~~a~gd~i~flD 155 (157)
+.. ..|..+++.+.... .+|+|+-.. ....... ...+++++... ...|...+.-.|++....+++++++
T Consensus 31 ~g~-~ll~~~i~~l~~~~-----~~ivvv~~~---~~~~~~~-~~~~~~~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~ 100 (200)
T PRK02726 31 QGV-PLLQRVARIAAACA-----DEVYIITPW---PERYQSL-LPPGCHWLREPPPSQGPLVAFAQGLPQIKTEWVLLLA 100 (200)
T ss_pred CCE-eHHHHHHHHHHhhC-----CEEEEECCC---HHHHHhh-ccCCCeEecCCCCCCChHHHHHHHHHhCCCCcEEEEe
Confidence 344 37888888775431 277776432 1111111 11356666543 3468899999999999889999999
Q ss_pred CC
Q psy3172 156 SH 157 (157)
Q Consensus 156 a~ 157 (157)
+|
T Consensus 101 ~D 102 (200)
T PRK02726 101 CD 102 (200)
T ss_pred CC
Confidence 87
No 104
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=78.34 E-value=24 Score=25.82 Aligned_cols=79 Identities=8% Similarity=0.013 Sum_probs=47.7
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
++|.-+. ..|...++.+.... ..+|+|+-+.. ...+...+... ..+.+.......|.+.+.-.+++...
T Consensus 23 ll~i~g~--pli~~~l~~l~~~g----~~~v~vv~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~ 95 (223)
T cd06915 23 LAPVAGR--PFLEYLLEYLARQG----ISRIVLSVGYL-AEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLP 95 (223)
T ss_pred ccEECCc--chHHHHHHHHHHCC----CCEEEEEcccC-HHHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcC
Confidence 3444443 37888888877653 12777765432 23333444422 12344454566788888888888886
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
.+.++++.+|
T Consensus 96 ~~~~lv~~~D 105 (223)
T cd06915 96 EDQFLVLNGD 105 (223)
T ss_pred CCCEEEEECC
Confidence 6778888776
No 105
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=75.87 E-value=6.4 Score=30.51 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCC-CEEEEEcCC--CCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIE-KVSVLRNDK--REGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~-~v~vi~~~~--n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
.|.++|++|....- .|++||-+|-..+-+++.+.+++ .++++.++. ..+-+..+-.|...++++ +++++||
T Consensus 33 ii~~~i~~L~~~gi----~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii~~sD 106 (239)
T COG1213 33 IIYRTIENLAKAGI----TEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FILVMSD 106 (239)
T ss_pred eHHHHHHHHHHcCC----ceEEEEeccchHHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-EEEEeCC
Confidence 78889999888763 29999998877777778888888 788887643 122345566778888888 4455554
No 106
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=75.69 E-value=27 Score=25.04 Aligned_cols=67 Identities=6% Similarity=0.041 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEc--CCCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRN--DKREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~--~~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
.|..+++.+... ..+|+|+-+... . .......++.++.. +...|...+.-.|+.....++++++++|
T Consensus 29 ll~~~l~~l~~~-----~~~ivv~~~~~~--~--~~~~~~~~~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D 97 (186)
T TIGR02665 29 LIEHVLARLRPQ-----VSDLAISANRNP--E--RYAQAGFGLPVVPDALADFPGPLAGILAGLRWAGTDWVLTVPCD 97 (186)
T ss_pred HHHHHHHHHHhh-----CCEEEEEcCCCH--H--HHhhccCCCcEEecCCCCCCCCHHHHHHHHHhcCCCeEEEEecC
Confidence 778788877532 227777754322 1 11122223455554 3447888888889988888899999987
No 107
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=75.16 E-value=22 Score=28.62 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 132 REGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 132 n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
-+-.-..||.|+..|+.++++++|+|
T Consensus 112 ~YPiN~LRNvAr~~a~T~~v~~~DvD 137 (317)
T PF13896_consen 112 LYPINLLRNVARSGARTDYVFLLDVD 137 (317)
T ss_pred CCChHHHHHHHHHhcCcceEEEecce
Confidence 34577899999999999999999987
No 108
>PLN02189 cellulose synthase
Probab=75.12 E-value=15 Score=34.35 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhC--CCCCccEEEEEeCCCC--------Cch-HHHHHh----------cCCCEEEEEcCCCCC-----H
Q psy3172 82 ALLRSVVSIINRT--PAHLLKEIILVDDFSD--------DPS-DGEELE----------RIEKVSVLRNDKREG-----L 135 (157)
Q Consensus 82 ~l~~~l~sl~~q~--~~~~~~eIivvddgS~--------d~t-~~~~~~----------~~~~v~vi~~~~n~G-----~ 135 (157)
.++.-++.+.++. ++. |--+.+||+. -++ ++..+. ..|.+.++..+++.| +
T Consensus 440 e~kvRI~~l~a~~~~~p~---~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~K 516 (1040)
T PLN02189 440 EFKVRINAIVAKAQKVPP---EGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKK 516 (1040)
T ss_pred HHHHHHHHHHhhcCccCC---ccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccc
Confidence 5566666665332 322 5567788882 122 222222 124577777766655 8
Q ss_pred HHHHHHHHH----HcCCCEEEEEcCC
Q psy3172 136 MRSRVKGAD----AATAPVLTFLDSH 157 (157)
Q Consensus 136 ~~a~n~g~~----~a~gd~i~flDa~ 157 (157)
+.|+|..++ ...|++|+-||+|
T Consensus 517 AGAMNaLlRVSavmTNaPfILNLDCD 542 (1040)
T PLN02189 517 AGAMNALIRVSAVLTNAPFMLNLDCD 542 (1040)
T ss_pred hhhHHHHHHHhhhccCCCeEEEccCc
Confidence 889999985 4479999999998
No 109
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=75.12 E-value=26 Score=25.74 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=44.2
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHH--HhcCCCEEEEEcCCCCCHHHHHHHHHHHc---
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEE--LERIEKVSVLRNDKREGLMRSRVKGADAA--- 146 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~--~~~~~~v~vi~~~~n~G~~~a~n~g~~~a--- 146 (157)
++|.. .. ..|..+++.+..... ..+|+||-+.......... ......+.++.. ..|.+.+...|++..
T Consensus 22 l~~i~-Gk-pll~~~i~~l~~~~~---~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~si~~al~~~~~~ 94 (218)
T cd02516 22 FLELG-GK-PVLEHTLEAFLAHPA---IDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEG--GATRQDSVLNGLKALPDA 94 (218)
T ss_pred eeEEC-Ce-EHHHHHHHHHhcCCC---CCEEEEEeChhHHHHHHHHHhcccCCCeEEECC--chHHHHHHHHHHHhcccC
Confidence 44443 44 388888888875432 1277776543322222111 011223444433 235677888888876
Q ss_pred CCCEEEEEcCC
Q psy3172 147 TAPVLTFLDSH 157 (157)
Q Consensus 147 ~gd~i~flDa~ 157 (157)
..++++++++|
T Consensus 95 ~~~~vlv~~~D 105 (218)
T cd02516 95 DPDIVLIHDAA 105 (218)
T ss_pred CCCEEEEccCc
Confidence 47899999886
No 110
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=73.84 E-value=36 Score=25.69 Aligned_cols=71 Identities=21% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcC-CCCCHHHHHHHHHHHcCCC--EEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND-KREGLMRSRVKGADAATAP--VLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~-~n~G~~~a~n~g~~~a~gd--~i~flDa~ 157 (157)
.+..+++..+.... .++|||-..- .....+.......++++.++ ...|.+...-.|++++.++ .++++=+|
T Consensus 33 lv~~~~~~a~~a~~----~~vivV~g~~-~~~~~~a~~~~~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgD 106 (199)
T COG2068 33 LVRASAETALSAGL----DRVIVVTGHR-VAEAVEALLAQLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGD 106 (199)
T ss_pred HHHHHHHHHHhcCC----CeEEEEeCcc-hhhHHHhhhccCCeEEEeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCC
Confidence 66666666665433 2888887654 33333444455677877764 4679999999999999766 77777655
No 111
>KOG1413|consensus
Probab=72.99 E-value=9 Score=31.58 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=38.1
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG 115 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~ 115 (157)
.+|.+.||+-+-|.+ ..+++|+..++.+.+-....-|||--||+..+.-.
T Consensus 65 ~~~v~pvvVf~csR~-~~lr~~v~kll~yrPsaekfpiiVSQD~~~e~vk~ 114 (411)
T KOG1413|consen 65 WPPVIPVVVFACSRA-DALRRHVKKLLEYRPSAEKFPIIVSQDCEKEAVKK 114 (411)
T ss_pred CCCceeEEEEecCcH-HHHHHHHHHHHHhCcchhhcCEEEeccCCcHHHHH
Confidence 356788888888998 59999999999998544445778877877765533
No 112
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=72.53 E-value=36 Score=25.29 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=45.9
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC-------CCEEEEEcCCCCCHHHHHHHHHH
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI-------EKVSVLRNDKREGLMRSRVKGAD 144 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~-------~~v~vi~~~~n~G~~~a~n~g~~ 144 (157)
.+|.-|.. .|..+|+.+.... ..+|+||-.......++..+... ..+.++......|.+.++..+..
T Consensus 25 Llpv~g~p--li~~~l~~l~~~g----~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~ 98 (214)
T cd04198 25 LLPVANKP--MIWYPLDWLEKAG----FEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRK 98 (214)
T ss_pred cCEECCee--HHHHHHHHHHHCC----CCeEEEEECHHHHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHh
Confidence 45555653 7888888877742 22788776532222233444332 12333434567789999988888
Q ss_pred HcCCCEEEEEcCC
Q psy3172 145 AATAPVLTFLDSH 157 (157)
Q Consensus 145 ~a~gd~i~flDa~ 157 (157)
...+++ +++.+|
T Consensus 99 ~i~~d~-lv~~~D 110 (214)
T cd04198 99 KIKKDF-LVLSCD 110 (214)
T ss_pred hcCCCE-EEEeCc
Confidence 776664 444443
No 113
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=72.48 E-value=35 Score=26.25 Aligned_cols=85 Identities=18% Similarity=0.110 Sum_probs=48.5
Q ss_pred EEEEE-EecC-Cc-hHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH--HHHHhcCCCEEEEEcC-------------
Q psy3172 69 TSVII-TFHN-EA-RSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD--GEELERIEKVSVLRND------------- 130 (157)
Q Consensus 69 vSiII-p~yn-~~-~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~--~~~~~~~~~v~vi~~~------------- 130 (157)
++|.+ |.|. +. +..|.+-|..-..+. +..+.+-+..+++... ...+.+...|+++..+
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G----~~~~~~Y~~~~~~~~~~vL~~Y~~~g~v~~~~w~~~~~~~~~~~~~~ 78 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLG----VDHFYFYDNSSSPSVRKVLKEYERSGYVEVIPWPLRPKFPDFPSPFP 78 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHhC----CCEEEEEEccCCHHHHHhHHHHhhcCeEEEEEcccccccCCcccchh
Confidence 44444 5554 42 126666666555552 2277777777766542 1223344567776654
Q ss_pred -C-----CCCHHHHHHHHHHHc--CCCEEEEEcCC
Q psy3172 131 -K-----REGLMRSRVKGADAA--TAPVLTFLDSH 157 (157)
Q Consensus 131 -~-----n~G~~~a~n~g~~~a--~gd~i~flDa~ 157 (157)
. ..|...|.|-.+... ..+|++|+|.|
T Consensus 79 ~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiD 113 (285)
T PF01697_consen 79 DPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDID 113 (285)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccc
Confidence 0 124455666666555 46899999986
No 114
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=72.41 E-value=33 Score=26.82 Aligned_cols=87 Identities=17% Similarity=0.034 Sum_probs=41.3
Q ss_pred EEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCC-----CEEEEEcCCCCCH-----HHH-
Q psy3172 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIE-----KVSVLRNDKREGL-----MRS- 138 (157)
Q Consensus 70 SiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~-----~v~vi~~~~n~G~-----~~a- 138 (157)
.|||++.+........+|..|.... -.+..||+.--++.-+....+.+...+ .++-+..+.-.+. +.+
T Consensus 3 GIVi~~g~~~~~~a~~lI~~LR~~g-~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T PF11051_consen 3 GIVITAGDKYLWLALRLIRVLRRLG-NTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKSFSKKGFQN 81 (271)
T ss_pred EEEEEecCccHHHHHHHHHHHHHhC-CCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeeccccccccccCCchh
Confidence 4788887754323345555554432 233448888732222222222322211 2222212121111 222
Q ss_pred HHHHHHHcCCCEEEEEcCC
Q psy3172 139 RVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 139 ~n~g~~~a~gd~i~flDa~ 157 (157)
.-.|+-.++.+=++|||||
T Consensus 82 K~lA~l~ssFeevllLDaD 100 (271)
T PF11051_consen 82 KWLALLFSSFEEVLLLDAD 100 (271)
T ss_pred hhhhhhhCCcceEEEEcCC
Confidence 2235556688889999998
No 115
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=72.30 E-value=39 Score=25.39 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=44.9
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|+-+ . ..|...|.++..... .+|++|........+...+... -.+.+...+...|.+.|...+.....
T Consensus 25 llpv~~-~-pli~~~l~~l~~~gi----~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~ 98 (240)
T cd02538 25 LLPVYD-K-PMIYYPLSTLMLAGI----REILIISTPEDLPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIG 98 (240)
T ss_pred eeEECC-E-EhHHHHHHHHHHCCC----CEEEEEeCcchHHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcC
Confidence 445544 3 378888887776432 2777765443222333433321 13445555556789999888888776
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
.+-++++.+|
T Consensus 99 ~~~~lv~~gD 108 (240)
T cd02538 99 DDPVCLILGD 108 (240)
T ss_pred CCCEEEEECC
Confidence 5544444443
No 116
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=72.23 E-value=47 Score=26.32 Aligned_cols=77 Identities=10% Similarity=0.182 Sum_probs=50.7
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER----IEKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~----~~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|+++.. .|...|.++..... .+|+++-...........+.. ..++.++..+...|.+.|.-.|.....
T Consensus 28 Llpv~gkP--mI~~~l~~l~~aGi----~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~ 101 (292)
T PRK15480 28 LLPIYDKP--MIYYPLSTLMLAGI----RDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIG 101 (292)
T ss_pred EeEECCEE--HHHHHHHHHHHCCC----CEEEEEecCCchHHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHhC
Confidence 78888864 78888888776532 388877654333334444432 225677777778899999998888774
Q ss_pred C-CEEEEE
Q psy3172 148 A-PVLTFL 154 (157)
Q Consensus 148 g-d~i~fl 154 (157)
+ ++++++
T Consensus 102 ~~~~~lv~ 109 (292)
T PRK15480 102 GDDCALVL 109 (292)
T ss_pred CCCEEEEE
Confidence 4 555554
No 117
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=70.69 E-value=40 Score=24.88 Aligned_cols=79 Identities=4% Similarity=-0.044 Sum_probs=47.6
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc-CCCEE--EEEcC-CCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER-IEKVS--VLRND-KREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~-~~~v~--vi~~~-~n~G~~~a~n~g~~~a~ 147 (157)
.+|.-+. ..|...|.++..... .+|+|+-.. ....+...+.. ...++ ..... ...|.+.+...++....
T Consensus 24 llpi~g~--~li~~~l~~l~~~gi----~~i~iv~~~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~ 96 (221)
T cd06422 24 LVPVAGK--PLIDHALDRLAAAGI----RRIVVNTHH-LADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLG 96 (221)
T ss_pred eeeECCE--EHHHHHHHHHHHCCC----CEEEEEccC-CHHHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcC
Confidence 4555554 388888888877642 277766543 33334344432 22333 33333 35688888888888876
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
.+.++++.+|
T Consensus 97 ~~~~lv~~~D 106 (221)
T cd06422 97 DEPFLVVNGD 106 (221)
T ss_pred CCCEEEEeCC
Confidence 5777877776
No 118
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=69.64 E-value=39 Score=24.91 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=42.4
Q ss_pred CCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc-CCCEEEEEc
Q psy3172 77 NEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAA-TAPVLTFLD 155 (157)
Q Consensus 77 n~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a-~gd~i~flD 155 (157)
+.. ..|..+++.+..... ..+|+|+-+..........+.....+.++.. . .+...+...|+... ..+++++++
T Consensus 25 ~gk-pll~~~l~~l~~~~~---~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~sl~~~l~~~~~~d~vlv~~ 98 (217)
T TIGR00453 25 GGR-PLLEHTLDAFLAHPA---IDEVVVVVSPEDQEFFQKYLVARAVPKIVAG-G-DTRQDSVRNGLKALKDAEWVLVHD 98 (217)
T ss_pred CCe-EHHHHHHHHHhcCCC---CCEEEEEEChHHHHHHHHHhhcCCcEEEeCC-C-chHHHHHHHHHHhCCCCCEEEEcc
Confidence 344 378888887765422 2277777643221222222222223444432 1 24567777788877 678999999
Q ss_pred CC
Q psy3172 156 SH 157 (157)
Q Consensus 156 a~ 157 (157)
+|
T Consensus 99 ~D 100 (217)
T TIGR00453 99 AA 100 (217)
T ss_pred Cc
Confidence 86
No 119
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=68.99 E-value=42 Score=27.87 Aligned_cols=79 Identities=10% Similarity=0.067 Sum_probs=47.3
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC--CC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT--AP 149 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~--gd 149 (157)
.+|.-+ . ..|..+|.++..... . +++|+-.. ....+...+.....++++..+...|.+.+...++.... .+
T Consensus 23 ll~v~g-k-pli~~~l~~l~~~g~--~--~iivvv~~-~~~~i~~~~~~~~~i~~v~~~~~~G~~~sv~~~~~~l~~~~~ 95 (450)
T PRK14360 23 LHPLGG-K-SLVERVLDSCEELKP--D--RRLVIVGH-QAEEVEQSLAHLPGLEFVEQQPQLGTGHAVQQLLPVLKGFEG 95 (450)
T ss_pred cCEECC-h-hHHHHHHHHHHhCCC--C--eEEEEECC-CHHHHHHHhcccCCeEEEEeCCcCCcHHHHHHHHHHhhccCC
Confidence 445544 3 388888888776543 1 55555433 22334444444456777766556677777777776653 35
Q ss_pred EEEEEcCC
Q psy3172 150 VLTFLDSH 157 (157)
Q Consensus 150 ~i~flDa~ 157 (157)
.++++++|
T Consensus 96 ~vlV~~~D 103 (450)
T PRK14360 96 DLLVLNGD 103 (450)
T ss_pred cEEEEeCC
Confidence 56778876
No 120
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=68.99 E-value=53 Score=27.50 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=50.5
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC--CC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT--AP 149 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~--gd 149 (157)
++|..+. ..+...|.++.+... .+++++-... .+.+.+.+.....+.++..+...|.+.+...++.... .+
T Consensus 25 l~pi~g~--pli~~~l~~l~~~gi----~~iiiv~~~~-~~~i~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~ 97 (459)
T PRK14355 25 MHPLAGR--PMVSWPVAAAREAGA----GRIVLVVGHQ-AEKVREHFAGDGDVSFALQEEQLGTGHAVACAAPALDGFSG 97 (459)
T ss_pred eceeCCc--cHHHHHHHHHHhcCC----CeEEEEECCC-HHHHHHHhccCCceEEEecCCCCCHHHHHHHHHHHhhccCC
Confidence 5566554 277878887766532 2666665432 2334444544446777666677788888888888764 36
Q ss_pred EEEEEcCC
Q psy3172 150 VLTFLDSH 157 (157)
Q Consensus 150 ~i~flDa~ 157 (157)
.++++++|
T Consensus 98 ~vlv~~gD 105 (459)
T PRK14355 98 TVLILCGD 105 (459)
T ss_pred cEEEEECC
Confidence 78888876
No 121
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=67.69 E-value=59 Score=25.64 Aligned_cols=77 Identities=14% Similarity=0.238 Sum_probs=47.7
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|+++.. .+...|..+..... .+|+||-.....+.....+... -++.++..+...|.+.|.-.|.....
T Consensus 24 Llpv~gkP--mI~~~L~~l~~aGi----~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~ 97 (286)
T TIGR01207 24 LLPIYDKP--MIYYPLSTLMLAGI----RDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIG 97 (286)
T ss_pred eeEECCEE--hHHHHHHHHHHCCC----CEEEEEecCCcHHHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHHHhC
Confidence 67888863 77777777776532 2787665433323333444321 24566666677899999998988775
Q ss_pred C-CEEEEE
Q psy3172 148 A-PVLTFL 154 (157)
Q Consensus 148 g-d~i~fl 154 (157)
. ++++++
T Consensus 98 ~~~~~li~ 105 (286)
T TIGR01207 98 GDPSALVL 105 (286)
T ss_pred CCCEEEEE
Confidence 4 455443
No 122
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=66.07 E-value=54 Score=27.12 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
.|..+++.+..... ..+|+||-+................++++. ...+...+...|++....+++++.|+|
T Consensus 35 ll~~tl~~l~~~~~---i~~IvVVv~~~~~~~~~~~~~~~~~v~~v~--gG~~r~~SV~~gL~~l~~d~VLVhdad 105 (378)
T PRK09382 35 LWLHVLENLSSAPA---FKEIVVVIHPDDIAYMKKALPEIKFVTLVT--GGATRQESVRNALEALDSEYVLIHDAA 105 (378)
T ss_pred HHHHHHHHHhcCCC---CCeEEEEeChHHHHHHHHhcccCCeEEEeC--CCchHHHHHHHHHHhcCCCeEEEeecc
Confidence 78888888776532 227777754322221111121222244442 223466677778888777999999986
No 123
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=65.37 E-value=61 Score=25.02 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHH--hcCCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEEEEcC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEEL--ERIEKVSVLRNDKREGLMRSRVKGADAAT---APVLTFLDS 156 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~--~~~~~v~vi~~~~n~G~~~a~n~g~~~a~---gd~i~flDa 156 (157)
.|..+|+.++.... ..+|||+-....+..+.... ...+++.++. +..........|+++.. .+|++..||
T Consensus 34 ll~~tl~~f~~~~~---i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~~v~--GG~~R~~SV~~gL~~~~~~~~~~VlvHDa 108 (230)
T COG1211 34 LLEHTLEAFLESPA---IDEIVVVVSPEDDPYFEKLPKLSADKRVEVVK--GGATRQESVYNGLQALSKYDSDWVLVHDA 108 (230)
T ss_pred ehHHHHHHHHhCcC---CCeEEEEEChhhhHHHHHhhhhccCCeEEEec--CCccHHHHHHHHHHHhhccCCCEEEEecc
Confidence 77788887776643 34888888776666554444 3445677764 33346666667887776 789999886
No 124
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=64.12 E-value=57 Score=24.23 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=46.2
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|.-+. ..|...|+.+..... .+|+|+-.. ....+...+... ..+.++......|.+.+...|.....
T Consensus 25 l~~i~g~--~li~~~l~~l~~~~~----~~i~vv~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~ 97 (236)
T cd04189 25 LIPVAGK--PIIQYAIEDLREAGI----EDIGIVVGP-TGEEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLG 97 (236)
T ss_pred eeEECCc--chHHHHHHHHHHCCC----CEEEEEcCC-CHHHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhcC
Confidence 4455443 378888888776432 277776654 333344444432 24556655556788888888888765
Q ss_pred -CCEEEEEcCC
Q psy3172 148 -APVLTFLDSH 157 (157)
Q Consensus 148 -gd~i~flDa~ 157 (157)
.++++ +.+|
T Consensus 98 ~~~~li-~~~D 107 (236)
T cd04189 98 DEPFVV-YLGD 107 (236)
T ss_pred CCCEEE-EECC
Confidence 55544 5554
No 125
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=64.08 E-value=71 Score=26.98 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=46.3
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHcC---
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI-EKVSVLRNDKREGLMRSRVKGADAAT--- 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~-~~v~vi~~~~n~G~~~a~n~g~~~a~--- 147 (157)
.+|..+.. .|...|+++..... . +++++-... ...+...+... ..+.++..+...|.+.+.-.|+....
T Consensus 26 llpi~gkp--li~~~l~~l~~~g~--~--~iivvv~~~-~~~i~~~~~~~~~~~~~~~~~~~~Gt~~si~~al~~l~~~~ 98 (482)
T PRK14352 26 LHTLAGRS--MLGHVLHAAAGLAP--Q--HLVVVVGHD-RERVAPAVAELAPEVDIAVQDEQPGTGHAVQCALEALPADF 98 (482)
T ss_pred eceeCCcc--HHHHHHHHHHhcCC--C--cEEEEECCC-HHHHHHHhhccCCccEEEeCCCCCCcHHHHHHHHHHhccCC
Confidence 44555533 78888888776532 1 665554332 22333333322 34555555566788888888887764
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
.+.++++++|
T Consensus 99 ~~~vlV~~gD 108 (482)
T PRK14352 99 DGTVVVTAGD 108 (482)
T ss_pred CCeEEEEeCC
Confidence 3667777776
No 126
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=64.02 E-value=16 Score=29.82 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=44.2
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHH------------HHHhc--CCCEEEEEcCC
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG------------EELER--IEKVSVLRNDK 131 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~------------~~~~~--~~~v~vi~~~~ 131 (157)
...+.||||+-... ++|+.-.. .- ..+ .+|+|-|+....++. +...+ .+.-+.|
T Consensus 10 ~~evdIVi~TI~~~-~fL~~~r~----~l-~~~--h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~~~~~I---- 77 (346)
T PLN03180 10 KDELDIVIPTIRNL-DFLEMWRP----FF-QPY--HLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGPKASCI---- 77 (346)
T ss_pred CCcceEEEeccCch-hHHHHHHH----hc-Ccc--cEEEEecCCcccceeccCCCceeecCHHHHHhhhccccccc----
Confidence 34699999995444 35444333 32 234 667776654433211 00000 0001111
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 132 REGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 132 n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
++.-.+.||.|.-.++.+|++++|-|
T Consensus 78 p~~~~a~R~fGyL~s~~~yivsiDDD 103 (346)
T PLN03180 78 SFKDSACRCFGYLVSKKKYIFTIDDD 103 (346)
T ss_pred ccCcccchhhhheeecceEEEEECCC
Confidence 12344678999888999999999965
No 127
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=61.46 E-value=18 Score=27.44 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=30.3
Q ss_pred CCccEEEEEeCCCCCch-HHHHHhcCC-CEEEEEcCC-------CCCH---HHHHHHHHHHcC-------CCEEEEEcCC
Q psy3172 97 HLLKEIILVDDFSDDPS-DGEELERIE-KVSVLRNDK-------REGL---MRSRVKGADAAT-------APVLTFLDSH 157 (157)
Q Consensus 97 ~~~~eIivvddgS~d~t-~~~~~~~~~-~v~vi~~~~-------n~G~---~~a~n~g~~~a~-------gd~i~flDa~ 157 (157)
++ ..|||+|++.... +...+++.. ..+.+..+. +... ...||.|++..+ .-+|.|.|-|
T Consensus 10 ~l--~WIVVEd~~~~~~~v~~lL~~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFaDDd 87 (207)
T PF03360_consen 10 PL--HWIVVEDSEETTPLVARLLRRSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYFADDD 87 (207)
T ss_dssp SE--EEEEEESSSS--HHHHHHHHHHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE--TT
T ss_pred ce--EEEEEeCCCCCCHHHHHHHHHcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEECCCC
Confidence 66 9999999998765 445554321 222222222 1111 448899987665 3477788865
No 128
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=61.30 E-value=39 Score=31.91 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhC--CCCCccEEEEEeCCCC--------CchHHHHHh-----------cCCCEEEEEcCCCCC-----H
Q psy3172 82 ALLRSVVSIINRT--PAHLLKEIILVDDFSD--------DPSDGEELE-----------RIEKVSVLRNDKREG-----L 135 (157)
Q Consensus 82 ~l~~~l~sl~~q~--~~~~~~eIivvddgS~--------d~t~~~~~~-----------~~~~v~vi~~~~n~G-----~ 135 (157)
.++.-|+.+.++. ++. |--+.+||+. -+++.+.+. ..|.+-++..+++.| +
T Consensus 458 e~k~RIe~l~a~~~~~p~---~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~K 534 (1079)
T PLN02638 458 EFKVRINGLVAKAQKVPE---EGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKK 534 (1079)
T ss_pred HHHHHHHHHHhhccccCC---ccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccc
Confidence 5666677766332 322 4456788872 122222222 235567777666655 8
Q ss_pred HHHHHHHHHHc----CCCEEEEEcCC
Q psy3172 136 MRSRVKGADAA----TAPVLTFLDSH 157 (157)
Q Consensus 136 ~~a~n~g~~~a----~gd~i~flDa~ 157 (157)
+.|+|..++.+ .|++|+-||+|
T Consensus 535 AGAMNaLlRVSavmTNaPfILNLDCD 560 (1079)
T PLN02638 535 AGAMNALVRVSAVLTNGPFLLNLDCD 560 (1079)
T ss_pred cchHHHHHHHhhhccCCCeEeecccC
Confidence 88999998544 79999999998
No 129
>PLN02893 Cellulose synthase-like protein
Probab=60.93 E-value=22 Score=32.16 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=42.0
Q ss_pred CCCCcEEEEEEec---CCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH
Q psy3172 64 RDLPATSVIITFH---NEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD 114 (157)
Q Consensus 64 ~~~p~vSiIIp~y---n~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~ 114 (157)
++.|.|-|.|+|- .|..-....++-|+++-+||.-+.-+.|-|||.+.-|.
T Consensus 98 ~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~ 151 (734)
T PLN02893 98 SDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTL 151 (734)
T ss_pred ccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHH
Confidence 4589999999994 44433778899999999999777789999999998764
No 130
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=60.40 E-value=67 Score=26.64 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=45.2
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHcC--C
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI-EKVSVLRNDKREGLMRSRVKGADAAT--A 148 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~-~~v~vi~~~~n~G~~~a~n~g~~~a~--g 148 (157)
.+|.-+. ..|..+|+.+..... .+|+|+-.- ....+.+.+... ..+.++......|.+.+...++.... .
T Consensus 27 ll~v~gk--pli~~~l~~l~~~gi----~~ivvv~~~-~~~~i~~~~~~~~~~~~~~~~~~~~G~~~sl~~a~~~l~~~~ 99 (446)
T PRK14353 27 LHPVAGR--PMLAHVLAAAASLGP----SRVAVVVGP-GAEAVAAAAAKIAPDAEIFVQKERLGTAHAVLAAREALAGGY 99 (446)
T ss_pred cCEECCc--hHHHHHHHHHHhCCC----CcEEEEECC-CHHHHHHHhhccCCCceEEEcCCCCCcHHHHHHHHHHHhccC
Confidence 4455453 378888888776542 166655433 223343444332 23444445556787777777777652 4
Q ss_pred CEEEEEcCC
Q psy3172 149 PVLTFLDSH 157 (157)
Q Consensus 149 d~i~flDa~ 157 (157)
+.++++++|
T Consensus 100 ~~~lv~~~D 108 (446)
T PRK14353 100 GDVLVLYGD 108 (446)
T ss_pred CCEEEEeCC
Confidence 667777876
No 131
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=60.05 E-value=70 Score=23.88 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCC-chHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDD-PSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d-~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
.+..+++.+..... ..+|+|+-+.... ..+..... ...++++..+...+.+ ....+++....++++++++|
T Consensus 26 li~~~i~~l~~~~~---~~~ivVv~~~~~~~~~i~~~~~-~~~v~~v~~~~~~~l~-~~~~~~~~~~~d~vli~~~D 97 (233)
T cd02518 26 LLEHLLDRLKRSKL---IDEIVIATSTNEEDDPLEALAK-KLGVKVFRGSEEDVLG-RYYQAAEEYNADVVVRITGD 97 (233)
T ss_pred HHHHHHHHHHhCCC---CCeEEEECCCCcccHHHHHHHH-HcCCeEEECCchhHHH-HHHHHHHHcCCCEEEEeCCC
Confidence 77888877765431 1277777654431 23323332 2356677655433222 22334445567899999887
No 132
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=58.83 E-value=71 Score=26.56 Aligned_cols=78 Identities=6% Similarity=-0.066 Sum_probs=45.2
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc---CC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAA---TA 148 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a---~g 148 (157)
.+|..+ . ..|...++++.... ..+|++|-.... +.+...+. ...++++..+...|.+.+.-.+++.. ..
T Consensus 27 l~~i~g-k-pli~~~l~~l~~~~----~~~iivv~~~~~-~~i~~~~~-~~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~ 98 (456)
T PRK14356 27 LQTLLG-E-PMLRFVYRALRPLF----GDNVWTVVGHRA-DMVRAAFP-DEDARFVLQEQQLGTGHALQCAWPSLTAAGL 98 (456)
T ss_pred ecccCC-C-cHHHHHHHHHHhcC----CCcEEEEECCCH-HHHHHhcc-ccCceEEEcCCCCCcHHHHHHHHHHHhhcCC
Confidence 344444 3 37888888775542 226766644322 22222222 23566776666677777777776655 35
Q ss_pred CEEEEEcCC
Q psy3172 149 PVLTFLDSH 157 (157)
Q Consensus 149 d~i~flDa~ 157 (157)
++++++++|
T Consensus 99 d~vlv~~gD 107 (456)
T PRK14356 99 DRVLVVNGD 107 (456)
T ss_pred CcEEEEeCC
Confidence 788888876
No 133
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=58.26 E-value=68 Score=23.20 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC--CCEEEEEcCC
Q psy3172 101 EIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT--APVLTFLDSH 157 (157)
Q Consensus 101 eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~--gd~i~flDa~ 157 (157)
+++|+.+. ....... ...+++++..+. .|.+.++..|++.+. ++.++++-+|
T Consensus 47 ~vvvv~~~---~~~~~~~-~~~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D 100 (195)
T TIGR03552 47 AVLVVSPD---PALLEAA-RNLGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMAD 100 (195)
T ss_pred CEEEECCC---HHHHHHH-HhcCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCC
Confidence 66666542 2222222 223567776543 499999999988753 4578887665
No 134
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=58.11 E-value=97 Score=25.58 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=47.5
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC-CCE
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT-APV 150 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~-gd~ 150 (157)
++|.-+. ..|..+|+.+.+... . +++++-.. ....+.+.+... .+.++......|.+.+...++.... .+.
T Consensus 22 l~~i~gk--pli~~~l~~l~~~g~--~--~iiiv~~~-~~~~i~~~~~~~-~i~~~~~~~~~G~~~ai~~a~~~l~~~~~ 93 (451)
T TIGR01173 22 LHPLAGK--PMLEHVIDAARALGP--Q--KIHVVYGH-GAEQVRKALANR-DVNWVLQAEQLGTGHAVLQALPFLPDDGD 93 (451)
T ss_pred hceeCCc--cHHHHHHHHHHhCCC--C--eEEEEECC-CHHHHHHHhcCC-CcEEEEcCCCCchHHHHHHHHHhcCCCCc
Confidence 4455443 378888888776542 2 66665443 223343444332 5666665556788888888888764 467
Q ss_pred EEEEcCC
Q psy3172 151 LTFLDSH 157 (157)
Q Consensus 151 i~flDa~ 157 (157)
++++++|
T Consensus 94 ~lv~~~D 100 (451)
T TIGR01173 94 VLVLYGD 100 (451)
T ss_pred EEEEECC
Confidence 8887776
No 135
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=57.95 E-value=36 Score=25.17 Aligned_cols=76 Identities=11% Similarity=0.039 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCC---CEEEEEcCCC---------------C-CHHHHHHHH
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIE---KVSVLRNDKR---------------E-GLMRSRVKG 142 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~---~v~vi~~~~n---------------~-G~~~a~n~g 142 (157)
.+..++.|++..+.......|++++++.+....+...+... .+..+..... . ....++-..
T Consensus 13 ~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~i 92 (250)
T PF01501_consen 13 GAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRHFSPATFARLFI 92 (250)
T ss_dssp HHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTCGGGGGGGGGGH
T ss_pred HHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhcccccccccHHHHHHhhh
Confidence 66678889998886322227888888777655433323222 2222221111 0 122234445
Q ss_pred HHH-cCCCEEEEEcCC
Q psy3172 143 ADA-ATAPVLTFLDSH 157 (157)
Q Consensus 143 ~~~-a~gd~i~flDa~ 157 (157)
.+. ..-+-+++||||
T Consensus 93 ~~ll~~~drilyLD~D 108 (250)
T PF01501_consen 93 PDLLPDYDRILYLDAD 108 (250)
T ss_dssp HHHSTTSSEEEEE-TT
T ss_pred HHHHhhcCeEEEEcCC
Confidence 566 577999999998
No 136
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=57.63 E-value=77 Score=23.56 Aligned_cols=71 Identities=23% Similarity=0.236 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHH-hcCCCEEEEEcCCCCCHHHHHHHHHHHc-CCCEEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEEL-ERIEKVSVLRNDKREGLMRSRVKGADAA-TAPVLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~-~~~~~v~vi~~~~n~G~~~a~n~g~~~a-~gd~i~flDa~ 157 (157)
.+..+++.+..... ..+|+|+-+........... .....+.++.. ..+.+.+.-.|+... ..++++++|+|
T Consensus 33 li~~~l~~l~~~~~---~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~~l~~~~~~d~vlv~~~D 105 (227)
T PRK00155 33 ILEHTLEAFLAHPR---IDEIIVVVPPDDRPDFAELLLAKDPKVTVVAG--GAERQDSVLNGLQALPDDDWVLVHDAA 105 (227)
T ss_pred HHHHHHHHHHcCCC---CCEEEEEeChHHHHHHHHHhhccCCceEEeCC--cchHHHHHHHHHHhCCCCCEEEEccCc
Confidence 77888887775432 12777775533212221211 12123444432 225677788888876 57899999986
No 137
>PLN02195 cellulose synthase A
Probab=54.19 E-value=32 Score=32.07 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEecCCchH---HHHHHHHHHHhhCCCCCccEEEEEeCCCCCch
Q psy3172 64 RDLPATSVIITFHNEARS---ALLRSVVSIINRTPAHLLKEIILVDDFSDDPS 113 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~~~~---~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t 113 (157)
+++|.|-|.|+|-++... ....++-|+++-+||.-+.-+.|-|||.+.-|
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT 301 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLS 301 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHH
Confidence 458999999999766422 77889999999999977778999999999766
No 138
>PLN02195 cellulose synthase A
Probab=53.02 E-value=18 Score=33.61 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCCCC-----HHHHHHHHHHHc----CCCEEEEEcCC
Q psy3172 121 IEKVSVLRNDKREG-----LMRSRVKGADAA----TAPVLTFLDSH 157 (157)
Q Consensus 121 ~~~v~vi~~~~n~G-----~~~a~n~g~~~a----~gd~i~flDa~ 157 (157)
.|.+.++..+++.| ++.|+|.+++.+ .|++|+.||+|
T Consensus 418 lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcD 463 (977)
T PLN02195 418 LPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCD 463 (977)
T ss_pred CceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCc
Confidence 56777777666655 777899998754 69999999998
No 139
>PLN02436 cellulose synthase A
Probab=52.67 E-value=37 Score=32.06 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=42.2
Q ss_pred CCCCcEEEEEEecCCchH---HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH
Q psy3172 64 RDLPATSVIITFHNEARS---ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD 114 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~~~~---~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~ 114 (157)
+++|.|-|.|+|-++... ....++-|+++-+||.-+.-+.|-|||.+.-|.
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 415 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTF 415 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHH
Confidence 458999999999766422 778899999999999877789999999997764
No 140
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=52.07 E-value=1e+02 Score=23.29 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhCC-CCCccEEEEEeCCCCCchHH---HHHhc-CCCEEEEEcCC-----------CCC-HHHHHHHHHH
Q psy3172 82 ALLRSVVSIINRTP-AHLLKEIILVDDFSDDPSDG---EELER-IEKVSVLRNDK-----------REG-LMRSRVKGAD 144 (157)
Q Consensus 82 ~l~~~l~sl~~q~~-~~~~~eIivvddgS~d~t~~---~~~~~-~~~v~vi~~~~-----------n~G-~~~a~n~g~~ 144 (157)
.+..++.|++.... ..+ .|.|+.++-++.... ..... ...++++..+. ... ...+|-...+
T Consensus 14 ~~~~~l~Sl~~~~~~~~~--~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ 91 (248)
T cd04194 14 YLAVTIKSILANNSKRDY--DFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPD 91 (248)
T ss_pred HHHHHHHHHHhcCCCCce--EEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHH
Confidence 67778889888765 345 888888775554432 22221 33455544321 111 2223444444
Q ss_pred HcC-CCEEEEEcCC
Q psy3172 145 AAT-APVLTFLDSH 157 (157)
Q Consensus 145 ~a~-gd~i~flDa~ 157 (157)
... -+-+++||+|
T Consensus 92 ll~~~~rvlylD~D 105 (248)
T cd04194 92 LLPDYDKVLYLDAD 105 (248)
T ss_pred HhcccCEEEEEeCC
Confidence 443 6789999998
No 141
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=52.04 E-value=41 Score=31.64 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=41.8
Q ss_pred CCCcEEEEEEecCCchH---HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH
Q psy3172 65 DLPATSVIITFHNEARS---ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD 114 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~---~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~ 114 (157)
.+|.|-|.|+|-++... ....++-|+++-+||.-+.-+.|-|||.+.-|.
T Consensus 285 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 337 (1044)
T PLN02915 285 RLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLF 337 (1044)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHH
Confidence 48999999999766422 778899999999999777789999999998764
No 142
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=51.79 E-value=1.1e+02 Score=23.71 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=27.0
Q ss_pred EEEEEEecCCchHHHHHHHH-HHHhh---C-CCCCccEEEEEeCCCCCch
Q psy3172 69 TSVIITFHNEARSALLRSVV-SIINR---T-PAHLLKEIILVDDFSDDPS 113 (157)
Q Consensus 69 vSiIIp~yn~~~~~l~~~l~-sl~~q---~-~~~~~~eIivvddgS~d~t 113 (157)
+-|..-.||.+ ..|..... ++++. - +.+. =|-|+++||.|.|
T Consensus 2 ~fIA~~l~~~~-~iL~~~~~~~ll~li~~LGp~nv--~vSIyE~~S~D~T 48 (241)
T PF11735_consen 2 YFIAANLYNNE-DILPSLWGDALLELIRFLGPENV--FVSIYESGSWDGT 48 (241)
T ss_pred EEEEEEcccCH-hHHHHHHHHHHHHHHHHhCcCeE--EEEEEeCCCCccH
Confidence 44555667666 46665555 44433 2 3344 7779999999998
No 143
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=51.70 E-value=84 Score=23.35 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=27.9
Q ss_pred EEEEEcCCCC-CHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 124 VSVLRNDKRE-GLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 124 v~vi~~~~n~-G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
+.++...... |.-.+.-+|++...+++++|+=+|
T Consensus 62 ~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D 96 (192)
T COG0746 62 LPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCD 96 (192)
T ss_pred CceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecC
Confidence 6777765665 999999999999999999987554
No 144
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=51.26 E-value=51 Score=24.35 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=7.8
Q ss_pred CCCEEEEEcCC
Q psy3172 147 TAPVLTFLDSH 157 (157)
Q Consensus 147 ~gd~i~flDa~ 157 (157)
+-.+++|.|+|
T Consensus 47 ~rgVIIfTDpD 57 (174)
T TIGR00334 47 KQGVIILTDPD 57 (174)
T ss_pred cCCEEEEeCCC
Confidence 45678888876
No 145
>PLN02400 cellulose synthase
Probab=51.19 E-value=37 Score=32.04 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=42.2
Q ss_pred CCCCcEEEEEEecCCchH---HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH
Q psy3172 64 RDLPATSVIITFHNEARS---ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD 114 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~~~~---~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~ 114 (157)
+.+|.|-|.|+|-++... ....++-|+++-+||.-+.-+.|-|||.+.-|.
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 406 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTF 406 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHH
Confidence 458999999999866422 778899999999999877789999999997663
No 146
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=50.78 E-value=1.1e+02 Score=23.26 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=45.0
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc-----CCCEEEEEcCCCCCHHHHHHHHHHHc
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER-----IEKVSVLRNDKREGLMRSRVKGADAA 146 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~-----~~~v~vi~~~~n~G~~~a~n~g~~~a 146 (157)
.+|+-+. . .|...|.++..... ..+|+|+-.. ....+...+.. ...+.++......|.+.|...+....
T Consensus 25 llpv~g~-p-lI~~~l~~l~~~~g---i~~i~iv~~~-~~~~i~~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l 98 (257)
T cd06428 25 LFPVAGK-P-MIHHHIEACAKVPD---LKEVLLIGFY-PESVFSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQI 98 (257)
T ss_pred cCeECCe-e-HHHHHHHHHHhcCC---CcEEEEEecC-CHHHHHHHHHhcccccCceEEEecCCccCCcHHHHHHHHHHh
Confidence 4566565 2 78888888776421 2277777554 22333333332 12344555555678787776666554
Q ss_pred C---CCEEEEEcCC
Q psy3172 147 T---APVLTFLDSH 157 (157)
Q Consensus 147 ~---gd~i~flDa~ 157 (157)
. .+.++++.+|
T Consensus 99 ~~~~~~~~lv~~gD 112 (257)
T cd06428 99 LAGNPSAFFVLNAD 112 (257)
T ss_pred hccCCCCEEEEcCC
Confidence 2 3556667665
No 147
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=50.56 E-value=38 Score=31.95 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=42.2
Q ss_pred CCCCcEEEEEEecCCchH---HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH
Q psy3172 64 RDLPATSVIITFHNEARS---ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD 114 (157)
Q Consensus 64 ~~~p~vSiIIp~yn~~~~---~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~ 114 (157)
+.+|.|-|.|+|-++... ....++-|+++-+||.-+.-+.|-|||.+.-|.
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 399 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 399 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 348999999999866422 778899999999999777789999999997764
No 148
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=50.02 E-value=1.1e+02 Score=22.94 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHc-CCCEEEEEcC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAA-TAPVLTFLDS 156 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a-~gd~i~flDa 156 (157)
.|..+++.+..... ..+|+||-+......+...+... .++.++.. ..+...+.-.|++.. ..++++++||
T Consensus 32 ll~~~i~~~~~~~~---~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~--g~~r~~sv~~gl~~~~~~d~vli~~~ 106 (230)
T PRK13385 32 IFIHALRPFLADNR---CSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKG--GTERQESVAAGLDRIGNEDVILVHDG 106 (230)
T ss_pred HHHHHHHHHHcCCC---CCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCC--CchHHHHHHHHHHhccCCCeEEEccC
Confidence 78888887766432 22777766442222222223322 23555532 234557777788766 3578898888
Q ss_pred C
Q psy3172 157 H 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 107 d 107 (230)
T PRK13385 107 A 107 (230)
T ss_pred C
Confidence 6
No 149
>PLN02189 cellulose synthase
Probab=49.99 E-value=40 Score=31.67 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=41.6
Q ss_pred CCCcEEEEEEecCCchH---HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH
Q psy3172 65 DLPATSVIITFHNEARS---ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD 114 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~---~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~ 114 (157)
.+|.|-|.|+|-++... ....++-|+++-+||.-+.-+.|-|||.+.-|.
T Consensus 329 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 381 (1040)
T PLN02189 329 MLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTF 381 (1040)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 48999999999766422 778899999999999777789999999997764
No 150
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=49.73 E-value=1.5e+02 Score=24.57 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=47.2
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC-CCE
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT-APV 150 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~-gd~ 150 (157)
++|.-+. ..|..+|+++.... . +|+|+-+.. ...+...+. ..+.++..+...|.+.+...++.... .+.
T Consensus 22 l~~v~gk--pli~~~l~~l~~~~---~--~i~vv~~~~-~~~i~~~~~--~~~~~~~~~~~~g~~~ai~~a~~~l~~~~~ 91 (448)
T PRK14357 22 LHKISGK--PMINWVIDTAKKVA---Q--KVGVVLGHE-AELVKKLLP--EWVKIFLQEEQLGTAHAVMCARDFIEPGDD 91 (448)
T ss_pred eeEECCe--eHHHHHHHHHHhcC---C--cEEEEeCCC-HHHHHHhcc--cccEEEecCCCCChHHHHHHHHHhcCcCCe
Confidence 5566554 38888888877742 2 777765422 222222222 13555655666788888888887764 578
Q ss_pred EEEEcCC
Q psy3172 151 LTFLDSH 157 (157)
Q Consensus 151 i~flDa~ 157 (157)
++++++|
T Consensus 92 vlv~~gD 98 (448)
T PRK14357 92 LLILYGD 98 (448)
T ss_pred EEEEeCC
Confidence 8888876
No 151
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=49.61 E-value=44 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=30.5
Q ss_pred HHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEc
Q psy3172 84 LRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRN 129 (157)
Q Consensus 84 ~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~ 129 (157)
++.|.....+--++- ++|++|.||+-..+...+...+++.++.+
T Consensus 6 K~~IA~~A~~~I~~~--~~Ifld~GtT~~~la~~L~~~~~ltVvTn 49 (161)
T PF00455_consen 6 KRAIARKAASLIEDG--DTIFLDSGTTTLELAKYLPDKKNLTVVTN 49 (161)
T ss_pred HHHHHHHHHHhCCCC--CEEEEECchHHHHHHHHhhcCCceEEEEC
Confidence 344555455544445 99999999997777677776667777765
No 152
>KOG2733|consensus
Probab=48.18 E-value=1.2e+02 Score=25.45 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=42.4
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHh
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELE 119 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~ 119 (157)
.+.+|+-|..+|+. .|.+.|+-+-+.+.+++..++|++.|.++..++.+...
T Consensus 31 ~~~~slavAGRn~~--KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 31 FEGLSLAVAGRNEK--KLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK 82 (423)
T ss_pred ccCceEEEecCCHH--HHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh
Confidence 45688999999986 78999998888887777779999999988888765544
No 153
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=48.16 E-value=1.5e+02 Score=25.18 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=47.3
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC---C
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT---A 148 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~---g 148 (157)
.+|.-+. ..|...|+++..... .+|+|+-.. ..+.+.+.+. ...+.++..+...|.+.+.-.|+.... .
T Consensus 29 llpi~gk--pli~~~l~~l~~~gi----~~ivvv~~~-~~~~i~~~~~-~~~i~~v~~~~~~Gt~~al~~~~~~l~~~~~ 100 (481)
T PRK14358 29 LHPVAGR--PMVAWAVKAARDLGA----RKIVVVTGH-GAEQVEAALQ-GSGVAFARQEQQLGTGDAFLSGASALTEGDA 100 (481)
T ss_pred ecEECCe--eHHHHHHHHHHhCCC----CeEEEEeCC-CHHHHHHHhc-cCCcEEecCCCcCCcHHHHHHHHHHhhCCCC
Confidence 4555554 388888888776532 277776543 2233434433 235777776667788888888877653 3
Q ss_pred CEEEEEcCC
Q psy3172 149 PVLTFLDSH 157 (157)
Q Consensus 149 d~i~flDa~ 157 (157)
+ ++++++|
T Consensus 101 ~-~lV~~gD 108 (481)
T PRK14358 101 D-ILVLYGD 108 (481)
T ss_pred c-EEEEeCC
Confidence 4 5567776
No 154
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=44.50 E-value=1.7e+02 Score=23.85 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEc--CCCCCHHHHHHHHHHHcCCCEEEEE
Q psy3172 77 NEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRN--DKREGLMRSRVKGADAATAPVLTFL 154 (157)
Q Consensus 77 n~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~--~~n~G~~~a~n~g~~~a~gd~i~fl 154 (157)
+.. ..|...++.+... ..+|+|+-.+.. ... ......+.++.. +...|...+.-.|++....++++++
T Consensus 30 ~Gk-pll~~~i~~l~~~-----~~~iivvv~~~~-~~~---~~~~~~~~~i~d~~~g~~G~~~si~~gl~~~~~~~vlv~ 99 (366)
T PRK14489 30 GGK-PLIERVVDRLRPQ-----FARIHLNINRDP-ARY---QDLFPGLPVYPDILPGFQGPLSGILAGLEHADSEYLFVV 99 (366)
T ss_pred CCe-eHHHHHHHHHHhh-----CCEEEEEcCCCH-HHH---HhhccCCcEEecCCCCCCChHHHHHHHHHhcCCCcEEEe
Confidence 444 3777777777532 227777444322 111 111123333432 2225788888889998888899999
Q ss_pred cCC
Q psy3172 155 DSH 157 (157)
Q Consensus 155 Da~ 157 (157)
++|
T Consensus 100 ~~D 102 (366)
T PRK14489 100 ACD 102 (366)
T ss_pred eCC
Confidence 887
No 155
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=44.37 E-value=36 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCc-hHHHHHHHHHHHhhCCC
Q psy3172 66 LPATSVIITFHNEA-RSALLRSVVSIINRTPA 96 (157)
Q Consensus 66 ~p~vSiIIp~yn~~-~~~l~~~l~sl~~q~~~ 96 (157)
.++++|=||+-... .++|..+|.|++....+
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~ 82 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSP 82 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCH
Confidence 34599999996543 25999999999998755
No 156
>PLN02248 cellulose synthase-like protein
Probab=44.10 E-value=53 Score=31.18 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=41.9
Q ss_pred CCCcEEEEEEecCCchH---HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchH
Q psy3172 65 DLPATSVIITFHNEARS---ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSD 114 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~---~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~ 114 (157)
++|.|-|.|+|-++... ....++-|+++-+||.-+.-+.|-|||.+.-|.
T Consensus 365 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf 417 (1135)
T PLN02248 365 DLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTF 417 (1135)
T ss_pred cCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHH
Confidence 58999999999866422 778899999999999877799999999997763
No 157
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=43.52 E-value=1.3e+02 Score=22.86 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC--CCEEEEEcC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT--APVLTFLDS 156 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~--gd~i~flDa 156 (157)
.|..+|+...+... ..+|+||-....-......+.. ..++++.- +. ........|++... .+++++-||
T Consensus 30 vl~~tl~~f~~~~~---i~~Ivvv~~~~~~~~~~~~~~~-~~v~iv~G-G~-tR~~SV~ngL~~l~~~~d~VlIHDa 100 (221)
T PF01128_consen 30 VLEYTLEAFLASPE---IDEIVVVVPPEDIDYVEELLSK-KKVKIVEG-GA-TRQESVYNGLKALAEDCDIVLIHDA 100 (221)
T ss_dssp HHHHHHHHHHTTTT---ESEEEEEESGGGHHHHHHHHHH-TTEEEEE---S-SHHHHHHHHHHCHHCTSSEEEEEET
T ss_pred eHHHHHHHHhcCCC---CCeEEEEecchhHHHHHHhhcC-CCEEEecC-Ch-hHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 67777777666432 3377777655443334444444 66777653 22 23334444666543 358888776
No 158
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=42.31 E-value=2e+02 Score=23.95 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=47.8
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC-CCE
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT-APV 150 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~-gd~ 150 (157)
.+|..+. ..|...++.+..... .+++++-.. ....+.+.+. ..++.++..+...|.+.+.-.++.... .+.
T Consensus 27 l~~i~gk--pli~~~i~~l~~~gi----~~i~vv~~~-~~~~i~~~~~-~~~~~~i~~~~~~Gt~~al~~a~~~l~~~~~ 98 (456)
T PRK09451 27 LHTLAGK--PMVQHVIDAANELGA----QHVHLVYGH-GGDLLKQTLA-DEPLNWVLQAEQLGTGHAMQQAAPFFADDED 98 (456)
T ss_pred cceeCCh--hHHHHHHHHHHhcCC----CcEEEEECC-CHHHHHHhhc-cCCcEEEECCCCCCcHHHHHHHHHhhccCCc
Confidence 4555553 378888888765532 267766543 2223333332 235676666666788888888887663 467
Q ss_pred EEEEcCC
Q psy3172 151 LTFLDSH 157 (157)
Q Consensus 151 i~flDa~ 157 (157)
++++++|
T Consensus 99 vlV~~gD 105 (456)
T PRK09451 99 ILMLYGD 105 (456)
T ss_pred EEEEeCC
Confidence 8888876
No 159
>KOG1111|consensus
Probab=42.11 E-value=87 Score=26.19 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=37.7
Q ss_pred ecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc---CCCEEEEE
Q psy3172 75 FHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER---IEKVSVLR 128 (157)
Q Consensus 75 ~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~---~~~v~vi~ 128 (157)
+||.+-+.|.+.|.++.++.+ +. +++++-||+....+++.+.+ ..++.++.
T Consensus 205 vyrKGiDll~~iIp~vc~~~p-~v--rfii~GDGPk~i~lee~lEk~~l~~rV~~lG 258 (426)
T KOG1111|consen 205 VYRKGIDLLLEIIPSVCDKHP-EV--RFIIIGDGPKRIDLEEMLEKLFLQDRVVMLG 258 (426)
T ss_pred eeccchHHHHHHHHHHHhcCC-Ce--eEEEecCCcccchHHHHHHHhhccCceEEec
Confidence 477776799999999988875 56 99999999987666655553 34555554
No 160
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=40.34 E-value=2e+02 Score=23.42 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=55.4
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER----IEKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~----~~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|.-|.. .|...|+++..+.. .|++++ -|...+.+.+.+.. ..++.++......|-+.++-.+.....
T Consensus 26 llpI~gkP--ii~~~l~~L~~~Gv----~eivi~-~~y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~ 98 (358)
T COG1208 26 LLPIAGKP--LIEYVLEALAAAGV----EEIVLV-VGYLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLG 98 (358)
T ss_pred cceeCCcc--HHHHHHHHHHHCCC----cEEEEE-eccchHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcC
Confidence 56777765 78888888877643 277777 44444445555554 357888888888999999999998887
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
++-++++.+|
T Consensus 99 ~~~f~v~~GD 108 (358)
T COG1208 99 GDDFLVLNGD 108 (358)
T ss_pred CCcEEEEECC
Confidence 6655555554
No 161
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=38.31 E-value=1.4e+02 Score=25.32 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=40.0
Q ss_pred EEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHHc----
Q psy3172 73 ITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI--EKVSVLRNDKREGLMRSRVKGADAA---- 146 (157)
Q Consensus 73 Ip~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~--~~v~vi~~~~n~G~~~a~n~g~~~a---- 146 (157)
+|..+.. ..|..+++.+..... - +++||-+......+.+.+... +..+++..+...|.+.|.-.++...
T Consensus 27 l~l~g~~-~ll~~tl~~l~~~~~--~--~iviv~~~~~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~~ 101 (468)
T TIGR01479 27 LALVGDL-TMLQQTLKRLAGLPC--S--SPLVICNEEHRFIVAEQLREIGKLASNIILEPVGRNTAPAIALAALLAARRN 101 (468)
T ss_pred eEcCCCC-cHHHHHHHHHhcCCC--c--CcEEecCHHHHHHHHHHHHHcCCCcceEEecccccCchHHHHHHHHHHHHHH
Confidence 4444544 378888887765532 1 666554321111222333332 2234555556566666555544333
Q ss_pred C-CCEEEEEcCC
Q psy3172 147 T-APVLTFLDSH 157 (157)
Q Consensus 147 ~-gd~i~flDa~ 157 (157)
. .++++++-+|
T Consensus 102 ~~~~~vlVl~~D 113 (468)
T TIGR01479 102 GEDPLLLVLAAD 113 (468)
T ss_pred CCCcEEEEecCc
Confidence 2 3567776665
No 162
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=37.62 E-value=1.8e+02 Score=22.00 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=26.9
Q ss_pred EEEEecC-CchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCc
Q psy3172 71 VIITFHN-EARSALLRSVVSIINRTPAHLLKEIILVDDFSDDP 112 (157)
Q Consensus 71 iIIp~yn-~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~ 112 (157)
|++.+-+ .-...+.-++.|++..+.... .+.|+.++-++.
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~--~~~il~~~is~~ 43 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPL--RFHVLTNPLSDT 43 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCe--EEEEEEccccHH
Confidence 4444444 222477889999999876555 899998885544
No 163
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=37.42 E-value=1.6e+02 Score=21.35 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=47.5
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC---------CCEEEEEc------CCCCCHH
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI---------EKVSVLRN------DKREGLM 136 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~---------~~v~vi~~------~~n~G~~ 136 (157)
.+|..+... .|..+|..+..... .+|+||-.... ..+.+.+... ..++++.. +...|.+
T Consensus 23 llpv~g~~p-li~~~l~~l~~~gi----~~iivv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta 96 (200)
T cd02508 23 AVPFGGRYR-LIDFPLSNMVNSGI----RNVGVLTQYKS-RSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTA 96 (200)
T ss_pred eeEECCeee-eHHHHHHHHHHCCC----CEEEEEeCCCh-HHHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccCcH
Confidence 677777522 67777777776432 38888776543 3333444321 12555542 3457888
Q ss_pred HHHHHHHHHcC---CCEEEEEcCC
Q psy3172 137 RSRVKGADAAT---APVLTFLDSH 157 (157)
Q Consensus 137 ~a~n~g~~~a~---gd~i~flDa~ 157 (157)
.|...|..... .+.++++-+|
T Consensus 97 ~al~~a~~~i~~~~~~~~lv~~gD 120 (200)
T cd02508 97 DAIYQNLDYIERSDPEYVLILSGD 120 (200)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCC
Confidence 88888877653 4666777665
No 164
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=36.83 E-value=1.1e+02 Score=19.17 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=36.1
Q ss_pred EEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 101 EIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 101 eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
++.++-.-|.|+.+...+...-.++.++-..+.|-..|+-..++..+
T Consensus 11 ~~~~lvS~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk 57 (74)
T PF04028_consen 11 KIAALVSRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALK 57 (74)
T ss_pred CEEEEEccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHH
Confidence 78888888999886666666667777887778888888887777665
No 165
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=35.93 E-value=2.5e+02 Score=23.07 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=41.8
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc-CCCEEEEEcCC--CCCHHHHHHHHHHHcCC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER-IEKVSVLRNDK--REGLMRSRVKGADAATA 148 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~-~~~v~vi~~~~--n~G~~~a~n~g~~~a~g 148 (157)
++|.-+.. .|...++.+.... - +++|+- +.....+...+.. .+.++++..+. ..|.+.+... + ....
T Consensus 24 Llpi~gkP--li~~~i~~l~~~~---~--~i~Ivv-~~~~~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~-~-~~~~ 93 (430)
T PRK14359 24 LHTICGKP--MLFYILKEAFAIS---D--DVHVVL-HHQKERIKEAVLEYFPGVIFHTQDLENYPGTGGALMG-I-EPKH 93 (430)
T ss_pred eCEECCcc--HHHHHHHHHHHcC---C--cEEEEE-CCCHHHHHHHHHhcCCceEEEEecCccCCCcHHHHhh-c-ccCC
Confidence 44565543 7888888887652 1 555554 3333444444443 34677775432 2455555543 2 1245
Q ss_pred CEEEEEcCC
Q psy3172 149 PVLTFLDSH 157 (157)
Q Consensus 149 d~i~flDa~ 157 (157)
+.++++++|
T Consensus 94 d~vlv~~gD 102 (430)
T PRK14359 94 ERVLILNGD 102 (430)
T ss_pred CeEEEEECC
Confidence 778888876
No 166
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=34.52 E-value=1.2e+02 Score=24.77 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=34.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcC
Q psy3172 69 TSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND 130 (157)
Q Consensus 69 vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~ 130 (157)
=.||+|.|+..-+ .....++.+..|.. |||=|+- .+.+.....++.+..+
T Consensus 293 ~avIvP~y~D~~D---~~a~~~L~~~fP~r--eVVGVp~-------r~il~ggGs~HCiTqQ 342 (346)
T COG2957 293 GAVIVPQYDDPND---ALALDVLQQAFPGR--EVVGVPA-------REILLGGGSLHCITQQ 342 (346)
T ss_pred CeEEeeccCCcch---HHHHHHHHHhCCCC--eEecccc-------HHheecCCceEEEeec
Confidence 3689999987743 34567888888877 9987752 2455566667666543
No 167
>PLN02248 cellulose synthase-like protein
Probab=33.92 E-value=52 Score=31.23 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=29.4
Q ss_pred cCCCEEEEEcCCCCC-----HHHHHHHHHH----HcCCCEEEEEcCC
Q psy3172 120 RIEKVSVLRNDKREG-----LMRSRVKGAD----AATAPVLTFLDSH 157 (157)
Q Consensus 120 ~~~~v~vi~~~~n~G-----~~~a~n~g~~----~a~gd~i~flDa~ 157 (157)
..|.+-++..+++.| ++.|+|+-++ ...|++|+-||+|
T Consensus 583 ~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCD 629 (1135)
T PLN02248 583 RLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCD 629 (1135)
T ss_pred ccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccC
Confidence 456777777666655 7889998776 4589999999998
No 168
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=33.64 E-value=92 Score=24.12 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEc
Q psy3172 83 LLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRN 129 (157)
Q Consensus 83 l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~ 129 (157)
-++.|.....+--++- +.|++|.|||...+...+...+.++++.+
T Consensus 77 eK~~IA~~Aa~lI~~g--~~ifld~GTT~~~la~~L~~~~~ltviTN 121 (253)
T COG1349 77 EKRAIAKAAATLIEDG--DTIFLDAGTTTLALARALPDDNNLTVITN 121 (253)
T ss_pred HHHHHHHHHHhhCCCC--CEEEECCCcHHHHHHHHhCcCCCeEEEeC
Confidence 3555666666665555 99999999998777677766666888875
No 169
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=32.55 E-value=1.6e+02 Score=19.81 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhCCCCCccEEEEEeC---CCCCchHHHHHhcCCCEEEEE
Q psy3172 81 SALLRSVVSIINRTPAHLLKEIILVDD---FSDDPSDGEELERIEKVSVLR 128 (157)
Q Consensus 81 ~~l~~~l~sl~~q~~~~~~~eIivvdd---gS~d~t~~~~~~~~~~v~vi~ 128 (157)
..+.+.+..++.+....- +|||.-| ||.-........+.++++++.
T Consensus 42 ~~~~~~l~~~i~~~~~~~--~vivltDl~GGSp~n~a~~~~~~~~~~~vIs 90 (116)
T TIGR00824 42 ETLQEKYNAALADLDTEE--EVLFLVDIFGGSPYNAAARIIVDKPHMDVIA 90 (116)
T ss_pred HHHHHHHHHHHHhcCCCC--CEEEEEeCCCCCHHHHHHHHHhhcCCEEEEE
Confidence 467778888887764444 7766554 555444434445667888774
No 170
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=31.93 E-value=1.2e+02 Score=23.17 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 101 EIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 101 eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
+|+||-. |+.+.........+.++..+ ..|+..|.+.|+.....+-++++=||
T Consensus 45 ~v~vVs~---d~~v~~~a~~~~g~~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aD 97 (217)
T PF01983_consen 45 DVVVVSR---DPEVAALARARLGAEVLPDP-GRGLNAALNAALAAAGDDPVLVLPAD 97 (217)
T ss_dssp SEEEEES-----S-TTTTT---SSEEEE----S-HHHHHHHHHH-H--S-EEEE-S-
T ss_pred CeEEecc---chhhhhhhhhccCCeEecCC-CCCHHHHHHHHHhccCCCceEEeecC
Confidence 5666642 33322222235678888765 56888999988544444445554443
No 171
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=31.72 E-value=3e+02 Score=22.81 Aligned_cols=77 Identities=9% Similarity=0.049 Sum_probs=45.4
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcC--CC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAAT--AP 149 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~--gd 149 (157)
.+|.-+. ..|..+|.++..... .+++++-.. ....+...+.. .+.++..+...|.+.+...++.... .+
T Consensus 24 ll~i~Gk--pli~~~l~~l~~~gi----~~iivvv~~-~~~~i~~~~~~--~~~~~~~~~~~g~~~al~~a~~~l~~~~d 94 (458)
T PRK14354 24 LHKVCGK--PMVEHVVDSVKKAGI----DKIVTVVGH-GAEEVKEVLGD--RSEFALQEEQLGTGHAVMQAEEFLADKEG 94 (458)
T ss_pred hCEeCCc--cHHHHHHHHHHhCCC----CeEEEEeCC-CHHHHHHHhcC--CcEEEEcCCCCCHHHHHHHHHHHhcccCC
Confidence 4455554 388888888876532 266555332 22233333322 3455555566788888887877654 36
Q ss_pred EEEEEcCC
Q psy3172 150 VLTFLDSH 157 (157)
Q Consensus 150 ~i~flDa~ 157 (157)
.++++++|
T Consensus 95 ~vlv~~~D 102 (458)
T PRK14354 95 TTLVICGD 102 (458)
T ss_pred eEEEEECC
Confidence 78888876
No 172
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=31.18 E-value=2.4e+02 Score=21.44 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=45.0
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc-------------------------CCCEEE
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER-------------------------IEKVSV 126 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~-------------------------~~~v~v 126 (157)
.+|+-+. ..|...|.++.+... .+|+|+-.... ..+...+.. ...+.+
T Consensus 25 llpv~gk--pli~~~l~~l~~~gi----~~i~iv~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (267)
T cd02541 25 MLPIVDK--PVIQYIVEEAVAAGI----EDIIIVTGRGK-RAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHY 97 (267)
T ss_pred eeEECCE--EHHHHHHHHHHHCCC----CEEEEEeCCch-HHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEE
Confidence 4566554 388888888877532 26666655432 112121110 124455
Q ss_pred EEcCCCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 127 LRNDKREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 127 i~~~~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
+..+...|.+.|...++.....+-++++.+|
T Consensus 98 ~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD 128 (267)
T cd02541 98 VRQKEPLGLGHAVLCAKPFIGDEPFAVLLGD 128 (267)
T ss_pred EEcCCCCChHHHHHHHHHHhCCCceEEEECC
Confidence 5555668999999888887764544444444
No 173
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=31.02 E-value=38 Score=20.95 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=10.2
Q ss_pred CCcEEEEEEecC
Q psy3172 66 LPATSVIITFHN 77 (157)
Q Consensus 66 ~p~vSiIIp~yn 77 (157)
-|++|.|||+-|
T Consensus 66 GPkiSFVIPCN~ 77 (78)
T PF15224_consen 66 GPKISFVIPCNN 77 (78)
T ss_pred CCceeEEEeCCC
Confidence 489999999865
No 174
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=30.90 E-value=1.4e+02 Score=24.51 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHh
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELE 119 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~ 119 (157)
.+.+-|+.++.+..++ .+++|-||.+|+.+--.++
T Consensus 85 ~I~~qld~vl~~~~~~---~~i~VsDGaeDE~vlPiIq 119 (344)
T PF04123_consen 85 KIAEQLDEVLSKFDPD---SAIVVSDGAEDERVLPIIQ 119 (344)
T ss_pred HHHHHHHHHHHhCCCC---EEEEEecChhhhhhhHhhh
Confidence 7888888888887654 8999999999998655554
No 175
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=29.89 E-value=3.1e+02 Score=22.38 Aligned_cols=66 Identities=6% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCC-CCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDK-REGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~-n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
.|..+++.+.... .+|+|+-+.+.. ..+.. .+++++.... ..|...+...|++++..+.++++=+|
T Consensus 202 ll~~~l~~l~~~~-----~~vvV~~~~~~~----~~~~~-~~v~~i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~D 268 (369)
T PRK14490 202 QLVHTAALLRPHC-----QEVFISCRAEQA----EQYRS-FGIPLITDSYLDIGPLGGLLSAQRHHPDAAWLVVACD 268 (369)
T ss_pred HHHHHHHHHHhhC-----CEEEEEeCCchh----hHHhh-cCCcEEeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCC
Confidence 6777777665431 277775543321 11222 3566665432 46777888888888777776666444
No 176
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=29.83 E-value=1.3e+02 Score=23.16 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEc
Q psy3172 84 LRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRN 129 (157)
Q Consensus 84 ~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~ 129 (157)
++.|.....+--++- ..|++|.|||-..+...+....++.++.+
T Consensus 79 K~~IA~~Aa~lI~~g--~tIflD~GtT~~~la~~L~~~~~ltvvTn 122 (252)
T PRK10681 79 KRRAAQLAATLVEPN--QTLFFDCGTTTPWIIEAIDNELPFTAVCY 122 (252)
T ss_pred HHHHHHHHHhhcCCC--CEEEEECCccHHHHHHhcCCCCCeEEEEC
Confidence 455555555554455 89999999997665555554445777764
No 177
>PLN02436 cellulose synthase A
Probab=29.69 E-value=1.2e+02 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=30.6
Q ss_pred cCCCEEEEEcCCCCC-----HHHHHHHHHHHc----CCCEEEEEcCC
Q psy3172 120 RIEKVSVLRNDKREG-----LMRSRVKGADAA----TAPVLTFLDSH 157 (157)
Q Consensus 120 ~~~~v~vi~~~~n~G-----~~~a~n~g~~~a----~gd~i~flDa~ 157 (157)
..|.+.++..+++.| ++.|+|+.++.+ .+.+|+-||+|
T Consensus 530 ~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCD 576 (1094)
T PLN02436 530 ELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCD 576 (1094)
T ss_pred cCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccc
Confidence 467788887777665 788999888754 79999999987
No 178
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=29.09 E-value=1.3e+02 Score=22.05 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=16.2
Q ss_pred cCCCCCHHH-HHHHHHHHc--CCCEEEEEcCC
Q psy3172 129 NDKREGLMR-SRVKGADAA--TAPVLTFLDSH 157 (157)
Q Consensus 129 ~~~n~G~~~-a~n~g~~~a--~gd~i~flDa~ 157 (157)
..+..|++. +.|.|...+ .|.=++++|+|
T Consensus 43 ~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 43 SLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 344445444 666665554 35666666665
No 179
>PF01793 Glyco_transf_15: Glycolipid 2-alpha-mannosyltransferase; InterPro: IPR002685 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This entry represents a family of fungi mannosyl-transferases involved in N-linked and O-linked glycosylation of proteins. They belong to the glycosyltransferase family 15 (GT15 from CAZY). Some of the enzymes in this family have been shown to be involved in O- and N-linked glycan modifications in the Golgi [].; GO: 0000030 mannosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 1S4P_A 1S4O_A 1S4N_A.
Probab=28.83 E-value=2.3e+02 Score=23.13 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=33.3
Q ss_pred CCCcEEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHH
Q psy3172 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEEL 118 (157)
Q Consensus 65 ~~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~ 118 (157)
..+.-++|+-+.|....-+.++|+++-.+=-..+.+-.|+++|..-++.....+
T Consensus 53 ~r~~Aafv~LvrN~dL~~~l~SI~~lE~rFN~kf~YpwvFlnd~pFteeFk~~i 106 (328)
T PF01793_consen 53 PRENAAFVMLVRNSDLEGLLSSIRSLEDRFNKKFNYPWVFLNDEPFTEEFKEAI 106 (328)
T ss_dssp S---EEEEEE--GGGHHHHHHHHHHHHHHTTTTS---EEEEESS---HHHHHHH
T ss_pred CCCceEEEEEEEchhHHHHHHHHHHHHHHccCCCCCCEEEEeCCCCCHHHHHHH
Confidence 356789999999988778888888888776555556999999998877644433
No 180
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=28.46 E-value=3.1e+02 Score=21.91 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=45.4
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|.-+. ..+..+|.++.... ..+|+++-..-....+...+... ..+.++..+...|.+.+.-.++....
T Consensus 24 l~pv~g~--pli~~~l~~l~~~g----i~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~ 97 (353)
T TIGR01208 24 LIPVANK--PILQYAIEDLAEAG----ITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLG 97 (353)
T ss_pred ccEECCE--eHHHHHHHHHHHCC----CCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3445454 37888888777653 22776665442333444444321 14556555566788888888888764
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
.+-++++.+|
T Consensus 98 ~~~~li~~gD 107 (353)
T TIGR01208 98 DDDFVVYLGD 107 (353)
T ss_pred CCCEEEEECC
Confidence 4333344454
No 181
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=28.23 E-value=2.5e+02 Score=20.80 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcC--CCCCHHHHHHHHHHHcCCCEEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND--KREGLMRSRVKGADAATAPVLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~--~n~G~~~a~n~g~~~a~gd~i~flDa~ 157 (157)
.|...++.+.+... ..+|+|+-+. ..+.+.+... +++++... ...|.+. .-.++.....+.++++++|
T Consensus 29 li~~~i~~l~~~~~---~~~ivv~t~~---~~i~~~~~~~-~~~v~~~~~~~~~g~~~-~~~a~~~~~~d~~lv~~~D 98 (238)
T PRK13368 29 MIQHVYERAAQAAG---VEEVYVATDD---QRIEDAVEAF-GGKVVMTSDDHLSGTDR-LAEVMLKIEADIYINVQGD 98 (238)
T ss_pred HHHHHHHHHHhcCC---CCeEEEECCh---HHHHHHHHHc-CCeEEecCccCCCccHH-HHHHHHhCCCCEEEEEcCC
Confidence 77778887776522 2277776432 3333444332 34444332 2234443 3335555556888888876
No 182
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=28.16 E-value=2.5e+02 Score=20.78 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=43.7
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc---CCCEEEEE--cCCCCCHHHHHHHHHHHc
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER---IEKVSVLR--NDKREGLMRSRVKGADAA 146 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~---~~~v~vi~--~~~n~G~~~a~n~g~~~a 146 (157)
.+|..+. ..+..++.++..+.. .+|+|+-.... ..+...+.. ...+.++. .....|.+.+...+....
T Consensus 25 llpv~g~--pli~~~l~~l~~~g~----~~v~iv~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~ 97 (233)
T cd06425 25 LVEFCNK--PMIEHQIEALAKAGV----KEIILAVNYRP-EDMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLL 97 (233)
T ss_pred cCeECCc--chHHHHHHHHHHCCC----cEEEEEeeeCH-HHHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHh
Confidence 3455554 378888888887642 26666654322 333343432 23444433 344568888888887776
Q ss_pred CC--CEEEEEcCC
Q psy3172 147 TA--PVLTFLDSH 157 (157)
Q Consensus 147 ~g--d~i~flDa~ 157 (157)
.. +-++++.+|
T Consensus 98 ~~~~~~~lv~~~D 110 (233)
T cd06425 98 GDDDEPFFVLNSD 110 (233)
T ss_pred ccCCCCEEEEeCC
Confidence 43 324444554
No 183
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=27.84 E-value=3.5e+02 Score=22.39 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.5
Q ss_pred CCcEEEEEEecCCchHHHHHHHHHHHhhCC
Q psy3172 66 LPATSVIITFHNEARSALLRSVVSIINRTP 95 (157)
Q Consensus 66 ~p~vSiIIp~yn~~~~~l~~~l~sl~~q~~ 95 (157)
.+.+.|||-++|.. .+|+.+|+|+.....
T Consensus 30 ~~~~vivvqVH~r~-~yl~~li~sL~~~~~ 58 (356)
T PF05060_consen 30 NDSIVIVVQVHNRP-EYLKLLIDSLSQARG 58 (356)
T ss_pred CCCEEEEEEECCcH-HHHHHHHHHHHHhhC
Confidence 35788899999999 599999999988764
No 184
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=27.82 E-value=2.4e+02 Score=20.48 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=42.9
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc-CCCE
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAA-TAPV 150 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a-~gd~ 150 (157)
+++..+ . ..|...++++.... ..+|+|+-+..+ +.....+... ...+. .....|.......|++.. ..+.
T Consensus 21 Ll~i~G-k-plI~~vi~~l~~~~----i~~I~Vv~~~~~-~~~~~~l~~~-~~~~~-~~~g~G~~~~l~~al~~~~~~~~ 91 (183)
T TIGR00454 21 LIEVCG-R-CLIDHVLSPLLKSK----VNNIIIATSPHT-PKTEEYINSA-YKDYK-NASGKGYIEDLNECIGELYFSEP 91 (183)
T ss_pred EeEECC-E-EHHHHHHHHHHhCC----CCEEEEEeCCCH-HHHHHHHhhc-CcEEE-ecCCCCHHHHHHHHhhcccCCCC
Confidence 344444 4 37888888876543 127777654322 2233333322 22233 356678888888888853 3556
Q ss_pred EEEEcCC
Q psy3172 151 LTFLDSH 157 (157)
Q Consensus 151 i~flDa~ 157 (157)
++++-+|
T Consensus 92 ~lv~~~D 98 (183)
T TIGR00454 92 FLVVSSD 98 (183)
T ss_pred EEEEeCC
Confidence 6766665
No 185
>PF11181 YflT: Heat induced stress protein YflT
Probab=27.03 E-value=1.5e+02 Score=19.45 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=25.2
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEe
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVD 106 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvd 106 (157)
+|-+|+.. ..+...|+.+.++-|..- +|.|+-
T Consensus 2 ~Igv~~~~-~E~~~~I~~L~~~Gy~~d--dI~Vva 33 (103)
T PF11181_consen 2 VIGVYDNE-EEALSAIEELKAQGYSED--DIYVVA 33 (103)
T ss_pred EEEEECCH-HHHHHHHHHHHHcCCCcc--cEEEEE
Confidence 45566655 378889999999999877 888886
No 186
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=26.70 E-value=2.8e+02 Score=20.95 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=11.2
Q ss_pred HHHcCCCEEEEEcCC
Q psy3172 143 ADAATAPVLTFLDSH 157 (157)
Q Consensus 143 ~~~a~gd~i~flDa~ 157 (157)
.+....+-+++||+|
T Consensus 85 ~~l~~~drvlylD~D 99 (240)
T cd02537 85 WNLTEYDKVVFLDAD 99 (240)
T ss_pred ccccccceEEEEeCC
Confidence 334467889999998
No 187
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=26.44 E-value=3.3e+02 Score=21.58 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=46.9
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhc--------------------------CCCEE
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER--------------------------IEKVS 125 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~--------------------------~~~v~ 125 (157)
.+|..+.. .|...|+.+..... .+|+|+-.... ..+.+.+.. ...+.
T Consensus 28 LvpV~gkP--iI~~vl~~l~~~Gi----~~ivivv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (297)
T TIGR01105 28 MLPIVDKP--MIQYIVDEIVAAGI----KEIVLVTHASK-NAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIM 100 (297)
T ss_pred eeEECCEE--HHHHHHHHHHHCCC----CEEEEEecCCh-HHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEE
Confidence 56665543 77778887776542 27777765432 333333321 12366
Q ss_pred EEEcCCCCCHHHHHHHHHHHcCC-CEEEEE
Q psy3172 126 VLRNDKREGLMRSRVKGADAATA-PVLTFL 154 (157)
Q Consensus 126 vi~~~~n~G~~~a~n~g~~~a~g-d~i~fl 154 (157)
++..++..|.+.|.-.+...... ++++++
T Consensus 101 ~~~q~~~lGtg~Av~~a~~~l~~~~flvv~ 130 (297)
T TIGR01105 101 NVRQAQPLGLGHSILCARPVVGDNPFVVVL 130 (297)
T ss_pred EeeCCCcCchHHHHHHHHHHhCCCCEEEEE
Confidence 67777789999999988887753 455443
No 188
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.26 E-value=1.5e+02 Score=23.06 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=18.3
Q ss_pred cCCCCCHHH-HHHHHHHHc-CCCEEEEEcCC
Q psy3172 129 NDKREGLMR-SRVKGADAA-TAPVLTFLDSH 157 (157)
Q Consensus 129 ~~~n~G~~~-a~n~g~~~a-~gd~i~flDa~ 157 (157)
.....|++. +.|.++..| .|.=++++|+|
T Consensus 65 ~kgGvGKStva~nLA~alA~~G~rVlliDaD 95 (265)
T COG0489 65 GKGGVGKSTVAVNLAAALAQLGKRVLLLDAD 95 (265)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 344445443 677776666 46678888876
No 189
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=26.07 E-value=3.1e+02 Score=21.18 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHHc--CCCEEEEEcCC
Q psy3172 82 ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIE-KVSVLRNDKREGLMRSRVKGADAA--TAPVLTFLDSH 157 (157)
Q Consensus 82 ~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~-~v~vi~~~~n~G~~~a~n~g~~~a--~gd~i~flDa~ 157 (157)
.|..+++.+..... ..+|+||-...........+.... .+.++ .+..+.....-.|++.. ..+++++.|++
T Consensus 54 ll~~tl~~~~~~~~---i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~VlihDaa 127 (252)
T PLN02728 54 IALYSLYTFARMPE---VKEIVVVCDPSYRDVFEEAVENIDVPLKFA--LPGKERQDSVFNGLQEVDANSELVCIHDSA 127 (252)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEeCHHHHHHHHHHHHhcCCceEEc--CCCCchHHHHHHHHHhccCCCCEEEEecCc
Confidence 67777777665322 227877765432222223333332 34433 23334556666688766 35688888863
No 190
>PHA01631 hypothetical protein
Probab=25.26 E-value=2.5e+02 Score=20.72 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=30.1
Q ss_pred EEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCC-----CHHHHHHHHHHH---cCCCEEEEEcCC
Q psy3172 101 EIILVDDFSDDPSDGEELERIEKVSVLRNDKRE-----GLMRSRVKGADA---ATAPVLTFLDSH 157 (157)
Q Consensus 101 eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~-----G~~~a~n~g~~~---a~gd~i~flDa~ 157 (157)
..++||+.=.+-+....-.. +..+++...|. ..+..+-..+.. ..-|+++|+|||
T Consensus 19 D~V~VD~~~~~~~~c~~~~~--~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSD 81 (176)
T PHA01631 19 DYVVVDKTFNDMTECQIPKY--QEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSD 81 (176)
T ss_pred cEEEEccccccccccccccc--CCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccc
Confidence 88999988776542211112 33445544433 233333334332 456888999997
No 191
>PLN02190 cellulose synthase-like protein
Probab=25.15 E-value=1e+02 Score=28.04 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=29.7
Q ss_pred cCCCEEEEEcCCCCC-----HHHHHHHHHHHc----CCCEEEEEcCC
Q psy3172 120 RIEKVSVLRNDKREG-----LMRSRVKGADAA----TAPVLTFLDSH 157 (157)
Q Consensus 120 ~~~~v~vi~~~~n~G-----~~~a~n~g~~~a----~gd~i~flDa~ 157 (157)
..|.+.++..+++.| ++.|+|.-++.+ .+.+|+-||+|
T Consensus 250 ~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCD 296 (756)
T PLN02190 250 EVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCD 296 (756)
T ss_pred cCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCc
Confidence 467777777766655 788999887654 79999999997
No 192
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=24.80 E-value=2.8e+02 Score=20.14 Aligned_cols=78 Identities=9% Similarity=0.082 Sum_probs=40.9
Q ss_pred EEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHcC
Q psy3172 72 IITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----EKVSVLRNDKREGLMRSRVKGADAAT 147 (157)
Q Consensus 72 IIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~----~~v~vi~~~~n~G~~~a~n~g~~~a~ 147 (157)
.+|..+.. .+..+|..+..... .+|+|+-+. ....+...+... ..+.++......|.+.++..+.+..
T Consensus 23 ll~~~g~p--li~~~l~~l~~~~~----~~iivv~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~~~- 94 (220)
T cd06426 23 MLKVGGKP--ILETIIDRFIAQGF----RNFYISVNY-LAEMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPEKP- 94 (220)
T ss_pred cCeECCcc--hHHHHHHHHHHCCC----cEEEEECcc-CHHHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHhhC-
Confidence 45555543 78888888776532 166666443 222233333321 2355555444567676665444333
Q ss_pred CCEEEEEcCC
Q psy3172 148 APVLTFLDSH 157 (157)
Q Consensus 148 gd~i~flDa~ 157 (157)
.+.++++.+|
T Consensus 95 ~~~~lv~~~D 104 (220)
T cd06426 95 TDPFLVMNGD 104 (220)
T ss_pred CCCEEEEcCC
Confidence 4556666665
No 193
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=24.27 E-value=1.6e+02 Score=22.59 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=13.5
Q ss_pred CCCCHHH-HHHHHHHHcC-CCEEEEEcCC
Q psy3172 131 KREGLMR-SRVKGADAAT-APVLTFLDSH 157 (157)
Q Consensus 131 ~n~G~~~-a~n~g~~~a~-gd~i~flDa~ 157 (157)
+..|++. +.|.|...|. |.=++++|+|
T Consensus 113 ~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 113 SGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3344443 5555555553 4455555554
No 194
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=23.63 E-value=43 Score=23.03 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=22.2
Q ss_pred CCCCCCccccccCCCCCCcEEEEEEecCCch-HHHHHHHHHHHhh
Q psy3172 50 PDTRHPACTRHALPRDLPATSVIITFHNEAR-SALLRSVVSIINR 93 (157)
Q Consensus 50 ~~~~~~~~~~~~~~~~~p~vSiIIp~yn~~~-~~l~~~l~sl~~q 93 (157)
|.+|...|..... .+.+.+-.|.|.+-. .+|.+||..+.+.
T Consensus 75 ~~yRG~~~~~y~~---l~~~~~~~PiY~eHd~~Yl~eCl~NL~~K 116 (120)
T TIGR02328 75 PNYRGQNCPNYDL---LEEIKLTTPIYPEHNDDYLNECLANLRAK 116 (120)
T ss_pred ccccCCcCCcccc---cchhhcCCCCChhhhHHHHHHHHHHHHHc
Confidence 4455555554432 223333344443321 3999999988764
No 195
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=22.94 E-value=4.1e+02 Score=21.46 Aligned_cols=74 Identities=20% Similarity=0.090 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhCCCCCccEEEEEeCCCCCch-HH---HHHhcCCCEEEEEc-------CCCCC-HHHHHHHHHHHcCC
Q psy3172 81 SALLRSVVSIINRTPAHLLKEIILVDDFSDDPS-DG---EELERIEKVSVLRN-------DKREG-LMRSRVKGADAATA 148 (157)
Q Consensus 81 ~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t-~~---~~~~~~~~v~vi~~-------~~n~G-~~~a~n~g~~~a~g 148 (157)
....+|+.|+...-+ +- |||+--=-.++-+ +. .....+|+..++.. +.|.. .-.+-..|++.|+.
T Consensus 20 ~~t~~~l~siR~~~P-~A--~IILSTW~~~d~~~l~~D~vv~s~DPG~~~~~~~~~~~~~~~NiNrQi~St~aGL~~~~~ 96 (311)
T PF07507_consen 20 DITKNCLASIRKHFP-GA--EIILSTWEGQDISGLDYDQVVISDDPGSNVVLYKKDGKPGPNNINRQIVSTLAGLKAAKT 96 (311)
T ss_pred hhHHHHHHHHHHhCC-CC--EEEEECCCCCCcccCCcceEEecCCCCcceeeccCCCCCcccchhHHHHHHHHHHHHhCC
Confidence 478888888877654 54 8888311111111 11 11234455544321 11222 23355669999999
Q ss_pred CEEEEEcCC
Q psy3172 149 PVLTFLDSH 157 (157)
Q Consensus 149 d~i~flDa~ 157 (157)
+|++=|=+|
T Consensus 97 ~Ya~KlRtD 105 (311)
T PF07507_consen 97 KYAMKLRTD 105 (311)
T ss_pred ceEEEEccc
Confidence 998866554
No 196
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=22.56 E-value=1.6e+02 Score=24.23 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=32.1
Q ss_pred EEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEc
Q psy3172 69 TSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRN 129 (157)
Q Consensus 69 vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~ 129 (157)
=.||+|+|+... .+.-..++++.+|+. +||-|+-. ........++.+..
T Consensus 305 ~~VivP~fg~~~---D~~A~~~l~~~fP~r--~Vv~I~~~-------~i~~~gG~iHCiT~ 353 (357)
T TIGR03380 305 GGIILPLFDDPN---DKLAQQQLQELFPDR--KVVGVPAR-------EILLGGGNIHCITQ 353 (357)
T ss_pred CEEEEecCCCch---hHHHHHHHHHHCCCC--eEEEEEcH-------HHHhCCCccEEeec
Confidence 378999998652 334456677777777 99999721 34456666666554
No 197
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.46 E-value=3.6e+02 Score=20.63 Aligned_cols=55 Identities=16% Similarity=0.032 Sum_probs=37.7
Q ss_pred EEEEEeCCCCCchHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHc-CC-CEEEEEc
Q psy3172 101 EIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAA-TA-PVLTFLD 155 (157)
Q Consensus 101 eIivvddgS~d~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a-~g-d~i~flD 155 (157)
+++++-.-|-|+++...+-.--+++.|+-..|.|...|....+... +| ++++..|
T Consensus 69 ~~~amvS~s~DGEliA~~l~kfG~~~IRGSs~Kgg~~Alr~l~k~Lk~G~~i~itpD 125 (214)
T COG2121 69 KIYAMVSPSRDGELIARLLEKFGLRVIRGSSNKGGISALRALLKALKQGKSIAITPD 125 (214)
T ss_pred cEEEEEcCCcCHHHHHHHHHHcCceEEeccCCcchHHHHHHHHHHHhCCCcEEEcCC
Confidence 6888888888887654444455677788777888888877777655 33 4454444
No 198
>PRK13551 agmatine deiminase; Provisional
Probab=22.18 E-value=1.7e+02 Score=24.19 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=31.4
Q ss_pred EEEEEEecCCchHHHHHHHHHHHhhCCCCCccEEEEEeCCCCCchHHHHHhcCCCEEEEEc
Q psy3172 69 TSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRN 129 (157)
Q Consensus 69 vSiIIp~yn~~~~~l~~~l~sl~~q~~~~~~~eIivvddgS~d~t~~~~~~~~~~v~vi~~ 129 (157)
=.||+|+|+... .+.-.+++++.+|+. +||-|+-. ........++.+..
T Consensus 308 ~~VivP~fg~~~---D~~A~~~l~~~fP~r--~Vv~I~~~-------~i~~~gG~iHCiT~ 356 (362)
T PRK13551 308 GGIIFPLFDDPN---DALALEILQQMFPDR--KVVGVPAR-------EILLGGGNIHCITQ 356 (362)
T ss_pred CEEEEecCCCch---hHHHHHHHHHHCCCC--eEEEEEcH-------HHHhcCCcceEccc
Confidence 378999998653 223445777777777 98888622 34455566665544
No 199
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=20.84 E-value=3.7e+02 Score=20.13 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=34.0
Q ss_pred HHHhhCCCCCccEEEEEeCCCC--C-----chHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEEEEcC
Q psy3172 89 SIINRTPAHLLKEIILVDDFSD--D-----PSDGEELERIEKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDS 156 (157)
Q Consensus 89 sl~~q~~~~~~~eIivvddgS~--d-----~t~~~~~~~~~~v~vi~~~~n~G~~~a~n~g~~~a~gd~i~flDa 156 (157)
+.+...+.....||+++-..-+ | .+++...+..-++.+|..... ....-.-.+...|.|-+.||.
T Consensus 91 ~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laaE---v~I~k~i~~~T~G~y~V~lde 162 (193)
T PF04056_consen 91 SSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAAE---VYICKKICKETGGTYGVILDE 162 (193)
T ss_pred HHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhHH---HHHHHHHHHhhCCEEEEecCH
Confidence 3344443333459999752211 1 123334445557778865432 223333445557888888874
No 200
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=20.78 E-value=2.4e+02 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.060 Sum_probs=5.9
Q ss_pred CCCEEEEEcCC
Q psy3172 121 IEKVSVLRNDK 131 (157)
Q Consensus 121 ~~~v~vi~~~~ 131 (157)
..++-++....
T Consensus 46 G~rVllID~D~ 56 (204)
T TIGR01007 46 GYKTLLIDGDM 56 (204)
T ss_pred CCeEEEEeCCC
Confidence 34566666543
No 201
>PLN02400 cellulose synthase
Probab=20.46 E-value=1.5e+02 Score=28.30 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCCC-----HHHHHHHHHHH----cCCCEEEEEcCC
Q psy3172 121 IEKVSVLRNDKREG-----LMRSRVKGADA----ATAPVLTFLDSH 157 (157)
Q Consensus 121 ~~~v~vi~~~~n~G-----~~~a~n~g~~~----a~gd~i~flDa~ 157 (157)
.|.+.++..+++.| ++.|+|+-++. +.+.+|+-||+|
T Consensus 522 LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCD 567 (1085)
T PLN02400 522 LPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCD 567 (1085)
T ss_pred CceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccc
Confidence 46677777777665 78899988874 379999999987
Done!