RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3172
(157 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 161 bits (410), Expect = 7e-50
Identities = 60/93 (64%), Positives = 66/93 (70%), Gaps = 5/93 (5%)
Query: 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELE-----RIEKV 124
SVII FHNEA S LLR+V S+INRTP LLKEIILVDDFSD P LE + KV
Sbjct: 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKV 60
Query: 125 SVLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157
VLR KREGL+R+R+ GA AAT VL FLDSH
Sbjct: 61 KVLRLKKREGLIRARIAGARAATGDVLVFLDSH 93
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 67.5 bits (165), Expect = 6e-15
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEK----VS 125
SVII +NE L ++ S++N+T + EII+VDD S D + E E K V
Sbjct: 1 SVIIPTYNEE-KYLEETLESLLNQT--YKNFEIIVVDDGSTDGT-VEIAEEYAKNDPRVR 56
Query: 126 VLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157
V+R ++ G +R G AT + FLD+
Sbjct: 57 VIRLEENLGKAAARNAGLKLATGDYIAFLDAD 88
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 50.2 bits (120), Expect = 2e-08
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEK----VSV 126
VII +NE L R + S++ +T + E+I+VDD S D + E LE K V
Sbjct: 1 VIIPAYNEEPY-LERCLESLLAQTYPNF--EVIVVDDGSTDGT-LEILEEYAKKDPRVIR 56
Query: 127 LRNDKREGLMRSRVKGADAATAPVLTFLDSH 157
+ N++ +GL +R G AA + FLD+
Sbjct: 57 VINEENQGLAAARNAGLKAARGEYILFLDAD 87
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 50.9 bits (120), Expect = 3e-08
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVS---V 126
SV+I +NE L ++ S++N+T EII+VDD S D + +E K
Sbjct: 6 SVVIPTYNEEEY-LPEALESLLNQTYKDF--EIIVVDDGSTDGTTEIAIEYGAKDVRVIR 62
Query: 127 LRNDKREGLMRSRVKGADAATAPVLTFLDS 156
L N++ GL +R G + A + FLD+
Sbjct: 63 LINERNGGLGAARNAGLEYARGDYIVFLDA 92
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 43.6 bits (103), Expect = 1e-05
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 59 RHALPRDLPATSVIITFHN--EARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGE 116
R AL P+ +V++ N + LL +++++ E+I+VDD S+DP
Sbjct: 66 RPALLPSPPSVTVVVPVRNRPAGLARLLAALLALDYPRDRL---EVIVVDDGSEDPVPTR 122
Query: 117 ELERIE-KVSVLRNDKREGLMRSRVKGADAATAPVLTFLDS 156
V V+R+ +R+G +R GA AA + F DS
Sbjct: 123 AARGARLPVRVIRHPRRQGPAAARNAGARAARTEFVAFTDS 163
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 43.0 bits (101), Expect = 2e-05
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 65 DLPATSVIITFHNEARSALLRSVVSIINRT-PAHLLKEIILVDDFSDDPSD------GEE 117
LP SVII +NE L ++ S++++ P + E+I+VDD S D + G E
Sbjct: 52 LLPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY---EVIVVDDGSTDETYEILEELGAE 108
Query: 118 LERIEKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDS 156
+V K G + G A V+ LD+
Sbjct: 109 YGPNFRVIYPE-KKNGGKAGALNNGLKRAKGDVVVILDA 146
>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
of the Glycosyltransferase 2 superfamily. DPM1 is the
catalytic subunit of eukaryotic dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. In higher eukaryotes,the enzyme has three
subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
dolichol phosphate and GDP-Man on the cytosolic surface
of the ER membrane by DPM synthase and then is flipped
onto the luminal side and used as a donor substrate. In
lower eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely fission
yeast, fungi, and animals, have no transmembrane region,
suggesting the existence of adapter molecules for
membrane anchoring. This family also includes bacteria
and archaea DPM1_like enzymes. However, the enzyme
structure and mechanism of function are not well
understood. The UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 185
Score = 41.4 bits (98), Expect = 4e-05
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 71 VIITFHNEARSALLRSVVSIINRTPAHLLK----EIILVDDFSDDPSDGEELERI----E 122
V+I +NE + + ++ R A L + EII+VDD S D + E +
Sbjct: 1 VVIPAYNEEEN-----IPELVERLLAVLEEGYDYEIIVVDDGSTDGT-AEIARELAARVP 54
Query: 123 KVSVLRNDKREGLMRSRVKGADAATAPVLTFLDS 156
+V V+R + G + G AA ++ +D+
Sbjct: 55 RVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 39.1 bits (92), Expect = 3e-04
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 63 PRDLPATSVIITFHNEAR--SALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER 120
P LP ++II +NE A L +++++ P L EII+V D S D + E
Sbjct: 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLAL--DYPRDRL-EIIVVSDGSTDGTA-EIARE 80
Query: 121 I--EKVSVLRNDKREGLMRSRVKGADAATAPVLTFLD 155
+ V +LR +R G + + AT ++ F D
Sbjct: 81 YADKGVKLLRFPERRGKAAALNRALALATGEIVVFTD 117
>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
family-2 subfamily with unknown function.
Glycosyltransferase family 2 (GT-2) subfamily of unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 221
Score = 36.8 bits (86), Expect = 0.002
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 70 SVIITFHNEARS--ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVL 127
S+II NEA + LL S+ + EII+VD S D + R V V+
Sbjct: 2 SIIIPTLNEAENLPRLLASLRRLNPLP-----LEIIVVDGGSTD--GTVAIARSAGVVVI 54
Query: 128 RNDK-REGLMRSRVKGADAATAPVLTFL 154
+ K R M GA AA L FL
Sbjct: 55 SSPKGRARQMN---AGAAAARGDWLLFL 79
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 36.4 bits (85), Expect = 0.003
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 70 SVIITFHNEARS--ALLRSVVSIINRTPAHLLKEIILVDDFSDD 111
S+II NE + LL S ++N++ L EII+VD S D
Sbjct: 3 SIIIPVRNEEKYIEELLES---LLNQSYPKDLIEIIVVDGGSTD 43
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 34.8 bits (81), Expect = 0.009
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 70 SVIITFHNEARSALLRSVVSIINRTPAHLL-----KEIILVDDFSDDPSDGEELERIEKV 124
S+II NEA + + A L E+I+VD S D + E+ R
Sbjct: 2 SIIIPVLNEAAT---------LPELLADLQALPGDAEVIVVDGGSTDGT--VEIARSLGA 50
Query: 125 SVLRNDK-REGLMRSRVKGADAATAPVLTFL--DS 156
V+ + K R M GA A +L FL D+
Sbjct: 51 KVIHSPKGRARQMN---AGAALAKGDILLFLHADT 82
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 33.8 bits (78), Expect = 0.020
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPS----DGEELERIEKVSV 126
V+I NEA + L R + S+ E+ILVDD S D + + + ++ +
Sbjct: 1 VVIAARNEAEN-LPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKI 59
Query: 127 LRNDKRE 133
L N +
Sbjct: 60 LNNSRVS 66
>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins
are required for O-antigen biosynthesis. The rfbC gene
encodes a predicted protein of 1,276 amino acids, which
is required for O-antigen biosynthesis in Myxococcus
xanthus. It is a subfamily of Glycosyltransferase Family
GT2, which includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. These are enzymes that catalyze the
transfer of sugar moieties from activated donor
molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 202
Score = 33.3 bits (77), Expect = 0.024
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI----E 122
P S+++ +N L ++ S+ +T + E+ + DD S DP L++
Sbjct: 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNW--ELCIADDASTDPEVKRVLKKYAAQDP 58
Query: 123 KVSVLRNDKREGLMRSRVKGADAATAPVLTFLDS 156
++ V+ ++ G+ + + AT + LD
Sbjct: 59 RIKVVFREENGGISAATNSALELATGEFVALLDH 92
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 33.3 bits (77), Expect = 0.025
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND 130
+II +N L + S++ +T E+I+VD+ S D S E +V ++RN
Sbjct: 1 IIIVNYNSLEY-LKACLDSLLAQTYPDF--EVIVVDNASTDGSVELLRELFPEVRLIRNG 57
Query: 131 KREG 134
+ G
Sbjct: 58 ENLG 61
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
eukaryotic DPM1. A family of bacterial enzymes related
to eukaryotic DPM1; Although the mechanism of eukaryotic
enzyme is well studied, the mechanism of the bacterial
enzymes is not well understood. The eukaryotic DPM1 is
the catalytic subunit of eukaryotic Dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. The enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 181
Score = 32.4 bits (75), Expect = 0.047
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 71 VIITFHNEARS--ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG---EELERIEKVS 125
+++ +NE + L + +++ EII VDD S D + E R +V
Sbjct: 1 IVVPVYNEEENLPELYERLKAVLESLGYDY--EIIFVDDGSTDRTLEILRELAARDPRVK 58
Query: 126 VLRN 129
V+R
Sbjct: 59 VIRL 62
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. In lower eukaryotes, such
as Saccharomyces cerevisiae and Trypanosoma brucei, DPM
synthase consists of a single component (Dpm1p and
TbDpm1, respectively) that possesses one predicted
transmembrane region near the C terminus for anchoring
to the ER membrane. In contrast, the Dpm1 homologues of
higher eukaryotes, namely fission yeast, fungi, and
animals, have no transmembrane region, suggesting the
existence of adapter molecules for membrane anchoring.
This family also includes bacteria and archaea DPM1_like
enzymes. However, the enzyme structure and mechanism of
function are not well understood. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 224
Score = 32.5 bits (75), Expect = 0.049
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 71 VII-TFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDG--EELERI-EKVSV 126
+II T+ NE + + ++ ++ + EII+VDD S D + EL + +V +
Sbjct: 1 IIIPTY-NEREN--IPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRL 57
Query: 127 LRNDKREGLMRSRVKGADAATAPVLTFLD---SH 157
+ + GL + ++G AA V+ +D SH
Sbjct: 58 IVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSH 91
>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase
superfamily. The cellulose synthase (CESA) superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members include cellulose synthase catalytic subunit,
chitin synthase, glucan biosynthesis protein and other
families of CESA-like proteins. Cellulose synthase
catalyzes the polymerization reaction of cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues in plants, most algae, some bacteria
and fungi, and even some animals. In bacteria, algae and
lower eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of Glucan.
Length = 180
Score = 31.4 bits (72), Expect = 0.11
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 71 VIITFHNEARS--ALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIE----KV 124
+I+ +NE + S++++ + E+I+VDD S D E LE + +
Sbjct: 1 IIVPAYNEEAVIERTIESLLALD-----YPKLEVIVVDDGSTD-DTLEILEELAALYIRR 54
Query: 125 SVLRNDKREG 134
++ DK G
Sbjct: 55 VLVVRDKENG 64
>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
Length = 328
Score = 30.4 bits (69), Expect = 0.30
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEK--- 123
P S+II +N + + S+I +T L EII+V+D S D S E + +
Sbjct: 6 PKLSIIIPLYNAGKD-FRAFMESLIAQTWTAL--EIIIVNDGSTDNS-VEIAKHYAENYP 61
Query: 124 -VSVLRNDKREGLMRSRVKGADAATAPVLTFLD 155
V +L + G+ +R G AT + F D
Sbjct: 62 HVRLL-HQANAGVSVARNTGLAVATGKYVAFPD 93
>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine
synthase. Members of this protein family are
biofilm-forming enzymes that polymerize
N-acetyl-D-glucosamine residues in beta(1,6) linkage.
One named members is IcaA (intercellular adhesin protein
A), an enzyme that acts (with aid of subunit IcaD) in
Polysaccharide Intercellular Adhesin (PIA) biosynthesis
in Staphylococcus epidermis). The homologous member in
E. coli is designated PgaC. Members are often encoded
next to a polysaccharide deacetylase and involved in
biofilm formation. Note that chitin, although also made
from N-acetylglucosamine, is formed with beta-1,4
linkages.
Length = 407
Score = 30.3 bits (69), Expect = 0.34
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Query: 64 RDLPATSVIITFHNEARSALLRSVVSIINRTPAHLLK------EIILVDDFSDDPSDGEE 117
+ P S+++ +NE A + +S HLL EII ++D S D + E
Sbjct: 42 DEYPGVSILVPCYNE--GANVEETIS-------HLLALRYPNFEIIAINDGSKDNT-AEI 91
Query: 118 LERIEK 123
L+R+
Sbjct: 92 LDRLAA 97
>gnl|CDD|133005 cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4
glucosyltransferase is required for biosynthesis of
lipooligosaccharide. UDP-glucose: lipooligosaccharide
(LOS) beta-1-4-glucosyltransferase catalyzes the
addition of the first residue, glucose, of the
lacto-N-neotetrase structure to HepI of the LOS inner
core. LOS is the major constituent of the outer leaflet
of the outer membrane of gram-positive bacteria. It
consists of a short oligosaccharide chain of variable
composition (alpha chain) attached to a branched inner
core which is lined in turn to lipid A. Beta 1,4
glucosyltransferase is required to attach the alpha
chain to the inner core.
Length = 229
Score = 29.6 bits (67), Expect = 0.50
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDD 111
VIIT NE R+ + R + S+ + EII+VD S D
Sbjct: 5 VIITK-NEERN-IERCLESVKW-----AVDEIIVVDSGSTD 38
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase,
exosortase G-associated. Members of this protein family
are probable glycosyltransferases of family 2, whose
genes are near those for the exosortase homolog XrtG
(TIGR03110), which is restricted to Gram-positive
bacteria. Other genes in the conserved gene neighborhood
include a 6-pyruvoyl tetrahydropterin synthase homolog
(TIGR03112) and an uncharacterized intergral membrane
protein (TIGR03766).
Length = 439
Score = 30.1 bits (68), Expect = 0.51
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 59 RHALPRDLPATSVIITFHNEARSALLRSVVSIINRT-PAHLLKEIILVDDFSDDPS 113
R LP ++II +N L + SI N+T P L+ IIL ++ S D S
Sbjct: 41 RLKFIGKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELID-IILANNQSTDDS 94
>gnl|CDD|213815 TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB. This
family of genes include a glycosyl transferase, group 2
domain (pfam00535) which are responsible, generally for
the transfer of nucleotide-diphosphate sugars to
substrates such as polysaccharides and lipids. The genes
of this family are often found in the same genetic locus
with squalene-hopene cyclase genes, and are never
associated with genes for the metabolism of phytoene.
Indeed, the members of this family appear to never be
found in a genome lacking squalene-hopene cyclase (SHC),
although not all genomes encoding SHC have this glycosyl
transferase. In the organism Zymomonas mobilis the
linkage of this gene to hopanoid biosynthesis has been
noted and the gene named HpnB. Hopanoids are known to
feature polar glycosyl head groups in many organisms.
Length = 384
Score = 29.6 bits (67), Expect = 0.66
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 63 PRDLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDD 111
P PA ++ NEA + V S++ + L +ILVDD S D
Sbjct: 36 PEAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPGKLH-VILVDDHSTD 82
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 29.1 bits (66), Expect = 0.79
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 101 EIILVDDFSDD--PSDGEEL--ERIEKVSVLRNDKREGLMRSRVKGADAATAPVLTFLD 155
EII+VDD S D +L + + VL K G + G AA + F D
Sbjct: 32 EIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90
>gnl|CDD|222329 pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2. Members
of this family of prokaryotic proteins include putative
glucosyltransferases,.
Length = 97
Score = 27.9 bits (63), Expect = 0.99
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 90 IINRTPAHLLK----EIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMR 137
+ AH ++VD+ SDD + E L + V V+R D R
Sbjct: 6 FLPEFLAHHRALGFDHFLIVDNDSDDGTA-EILAALPDVGVIRTDLSYRDAR 56
>gnl|CDD|211965 TIGR04242, nodulat_NodC, chitooligosaccharide synthase NodC.
Members of this family are NodC, an
N-acetylglucosaminyltransferase involved in the
production of nodulation factors through which rhizobia
establish symbioses with leguminous plants.
Length = 395
Score = 28.9 bits (65), Expect = 1.00
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 55 PACTRHALPRD-LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDD 111
PA + ALP D LP+ VI+ NE L + SI + A L+ + +VDD S +
Sbjct: 35 PATSSDALPSDPLPSVDVIVPCFNEDPRTLSECLASIAAQDYAGKLR-VYVVDDGSTN 91
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 29.0 bits (65), Expect = 1.1
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 9 VRYFDESAY---LEKGALRPGQDPYESNKYNQAASDNTPSN 46
++Y+++ + L P Q+PY+ N AS+ T +
Sbjct: 548 IKYYEDKFFTSRLLPPTFVPTQEPYDPRANNNEASEETETI 588
>gnl|CDD|226390 COG3872, COG3872, Predicted metal-dependent enzyme [General
function prediction only].
Length = 318
Score = 29.0 bits (65), Expect = 1.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 84 LRSVVSIINRTPAHLLKEIILVDDFSD-DPSDGEELERIEKVSVLRND 130
LR VS+I + +K + D D DP + ++ + EK S L
Sbjct: 60 LRGFVSLI-ESLVIGIKHLNFSADRYDEDPKEDDDEKLSEKKSKLAMI 106
>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional.
Length = 420
Score = 28.7 bits (65), Expect = 1.2
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 16/65 (24%)
Query: 65 DLPATSVIITFHNEARSALLRSVVSIINRTPAHLLK------EIILVDDFSDDPSDGEEL 118
+ P S+++ +NE + + T +HLL E+I ++D S D + GE L
Sbjct: 52 EYPGVSILVPCYNEGEN---------VEETISHLLALRYPNYEVIAINDGSSDNT-GEIL 101
Query: 119 ERIEK 123
+R+
Sbjct: 102 DRLAA 106
>gnl|CDD|119312 pfam10792, DUF2605, Protein of unknown function (DUF2605). This
family is conserved in Cyanobacteria. The function is
not known.
Length = 99
Score = 27.6 bits (62), Expect = 1.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 98 LLKEII--LVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADAA 146
LLK ++ L++DF EL E +S + ++++ L+ RVK A
Sbjct: 8 LLKTLLEPLLEDFQHWFQRSRELLETEPISFMSPEEQQALL-ERVKEAQKE 57
>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase;
Provisional.
Length = 325
Score = 28.2 bits (63), Expect = 1.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 70 SVIITFHNEARSALLRSVVSIINRTPAHLLK-----EIILVDDFSDDPS 113
SV+I +NE S + +I RT A EI+L+DD S D S
Sbjct: 9 SVVIPVYNEQES-----LPELIRRTTAACESLGKEYEILLIDDGSSDNS 52
>gnl|CDD|234160 TIGR03295, frhA, coenzyme F420 hydrogenase, subunit alpha. This
model represents that clade of F420-dependent
hydrogenases (FRH) beta subunits found exclusively and
universally in methanogenic archaea. This protein is a
member of the Nickel-dependent hydrogenase superfamily
represented by Pfam model, pfam00374.
Length = 411
Score = 27.9 bits (62), Expect = 2.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 83 LLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLR 128
LLR + NR +H L ++ DF + E I+++ +R
Sbjct: 92 LLRELTGCANRLHSHALHHFLIAPDFIPETDTKLVREVIKRIQRMR 137
>gnl|CDD|224629 COG1715, Mrr, Restriction endonuclease [Defense mechanisms].
Length = 308
Score = 27.4 bits (61), Expect = 3.2
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 82 ALLRSVVSIINRTPAHLLKEII--LVDDFSDDPSDGEELERIEKVSVLRND--------K 131
+ V+ ++E I ++F D + E+ + N K
Sbjct: 8 TFMEPVLKYTADGQERSVREKIHAAAEEFGLDEQERAEVLPSGRQQTYANRIGWALTNLK 67
Query: 132 REGLMRSRVKGADAATAPVLTFLDSH 157
R GL+ S ++G T L +
Sbjct: 68 RAGLLDSPLRGYVQITDLGRQILKAF 93
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 27.5 bits (62), Expect = 4.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 72 IITFHNEARSALLRSV 87
II F EAR AL R V
Sbjct: 4 IIKFDEEARRALERGV 19
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 27.0 bits (60), Expect = 5.1
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 64 RDLPATSVIITFHNEAR------SALLRSVV----SIINRTPAHLLKEIILVDDFSDDPS 113
RDL A ++++T + + SA +S + + I TP + E++ + F D+P
Sbjct: 127 RDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIG-TPYWMAPEVVACETFKDNPY 185
Query: 114 D 114
D
Sbjct: 186 D 186
>gnl|CDD|221345 pfam11965, DUF3479, Domain of unknown function (DUF3479). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 160 amino acids in length. This
domain is found associated with pfam02514.
Length = 164
Score = 26.0 bits (58), Expect = 7.2
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 71 VIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELER 120
VI+T AL R+ + L + + DP+ EEL
Sbjct: 4 VIVTLDAHYNGALARAAERLNRERFPGLELSVFAAAELERDPAALEELAA 53
>gnl|CDD|163441 TIGR03729, acc_ester, putative phosphoesterase. Members of this
protein family belong to the larger family pfam00149
(calcineurin-like phosphoesterase), a family largely
defined by small motifs of metal-chelating residues.
The subfamily in this model shows a good but imperfect
co-occurrence in species with domain TIGR03715 that
defines a novel class of signal peptide typical of the
accessory secretory system.
Length = 239
Score = 26.1 bits (58), Expect = 9.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 4 DNHVDVRYFDESAYLEK 20
D H+D+ +FD LE
Sbjct: 7 DLHIDLNHFDTEEMLET 23
>gnl|CDD|109608 pfam00558, Vpu, Vpu protein. The Vpu protein contains an
N-terminal transmembrane spanning region and a
C-terminal cytoplasmic region. The HIV-1 Vpu protein
stimulates virus production by enhancing the release of
viral particles from infected cells. The VPU protein
binds specifically to CD4.
Length = 81
Score = 25.0 bits (55), Expect = 9.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 98 LLKEIILVDDFSDDPSDGEELERIEK 123
L+K I + S + S+G+E E +
Sbjct: 42 LIKRIRERAEDSGNESNGDEEEELAD 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,158,769
Number of extensions: 742860
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 45
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.8 bits)