RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3172
(157 letters)
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 189 bits (480), Expect = 9e-59
Identities = 96/151 (63%), Positives = 115/151 (76%)
Query: 7 VDVRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDL 66
V F++ AY+ +R GQDPY NK+NQ SD +R +PDTRH C R DL
Sbjct: 6 VRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDL 65
Query: 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSV 126
PATSV+ITFHNEARSALLR+VVS++ ++P HL+KEIILVDD+S+DP DG L +IEKV V
Sbjct: 66 PATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRV 125
Query: 127 LRNDKREGLMRSRVKGADAATAPVLTFLDSH 157
LRND+REGLMRSRV+GADAA A VLTFLDSH
Sbjct: 126 LRNDRREGLMRSRVRGADAAQAKVLTFLDSH 156
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 163 bits (413), Expect = 4e-49
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 5/124 (4%)
Query: 39 ASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVVSIINRTPAHL 98
AS+ NR +PD R C P +LP TSV+I FHNEA S LLR+V S+INR+P H+
Sbjct: 1 ASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHM 60
Query: 99 LKEIILVDDFSDDPSDGEELERI-----EKVSVLRNDKREGLMRSRVKGADAATAPVLTF 153
++EI+LVDD S+ LE V V+R ++R GL+R+R+KGA + V+TF
Sbjct: 61 IEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITF 120
Query: 154 LDSH 157
LD+H
Sbjct: 121 LDAH 124
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 157 bits (397), Expect = 3e-46
Identities = 65/135 (48%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 27 QDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRS 86
Y N +N SD NR +PD RHP C LP TS+II FHNE S+LLR+
Sbjct: 72 DQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRT 131
Query: 87 VVSIINRTPAHLLKEIILVDDFSDDPSDGEELE----RIEKVSVLRNDKREGLMRSRVKG 142
V S++NR+P L+ EI+LVDDFSD + LE V +LR KREGL+R+R+ G
Sbjct: 132 VHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKREGLIRTRMLG 191
Query: 143 ADAATAPVLTFLDSH 157
A AT V+TFLDSH
Sbjct: 192 ASVATGDVITFLDSH 206
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 53.1 bits (127), Expect = 5e-09
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEK--- 123
++I+T++N A + + SI + +I+V+D S D S + ++ K
Sbjct: 2 NKLTIIVTYYN-AEEYITGCLESIKQQRTQDF--NLIIVNDGSTDQS-KKLMDEAIKDYD 57
Query: 124 --VSVLRNDKREGLMRSRVKGADAATAPVLTFLDS 156
+ + D+ G +R + P FLD+
Sbjct: 58 KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDA 92
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 44.5 bits (105), Expect = 3e-06
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 67 PATSVIITFHNEARSALLRSVVSIIN-RTPAHLLKEIILVDDFSDDPSDGEELERIEKVS 125
S++I +N A+ L ++ + N +T E+I+ DD S + + E + E +
Sbjct: 93 DGLSIVIPTYNRAK-ILAITLACLCNQKTIYDY--EVIVADDGSKENIE-EIVREFESLL 148
Query: 126 ----VLRNDKREGLMRSRVKGADAATAPVLTFLDS 156
V + D L R G AA + LD
Sbjct: 149 NIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDC 183
Score = 41.8 bits (98), Expect = 3e-05
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 9/137 (6%)
Query: 24 RPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSAL 83
PG++ + + + R A + +P S+ I +N ++ +
Sbjct: 332 PPGKENETDRAAGKNITVQLLQQKVPYFYRKKEKIESATLKRVPLVSIYIPAYNCSK-YI 390
Query: 84 LRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEK----VSVLRNDKREGLMRSR 139
+R V S +N+T L E+ + DD S D + L+ V + + G+ +
Sbjct: 391 VRCVESALNQTITDL--EVCICDDGSTDDT-LRILQEHYANHPRVRFISQKNK-GIGSAS 446
Query: 140 VKGADAATAPVLTFLDS 156
+ LDS
Sbjct: 447 NTAVRLCRGFYIGQLDS 463
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 42.8 bits (101), Expect = 1e-05
Identities = 17/98 (17%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELE------RI-- 121
SVI+T +N++ + +S+ SI+++T + E+ ++DD S++ + + R+
Sbjct: 4 SVIMTSYNKSDY-VAKSISSILSQTFSDF--ELFIMDDNSNEETL-NVIRPFLNDNRVRF 59
Query: 122 ---EKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDS 156
+ V ++ + + A +T+
Sbjct: 60 YQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 38.9 bits (90), Expect = 3e-04
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 70 SVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDD------PSDGEELERIEK 123
SV++ +E + + SV+ I+ L+ E+I++D S D + G + E+
Sbjct: 51 SVVLPALDEEDT--IGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGARVVSREQ 108
Query: 124 VSVLRNDKREGLMRSRVKGADAATAPVLTFLD 155
+ R G + + A+ ++ F+D
Sbjct: 109 A-LPEVPIRPGKGEALWRSLAASRGDIVVFVD 139
>3bcv_A Putative glycosyltransferase protein; protein structure initiative
II, PSI-II NYSGXRC, structural genomics; 2.35A
{Bacteroides fragilis}
Length = 240
Score = 34.1 bits (79), Expect = 0.010
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 70 SVIITFHNEARSALLRSVVSIINRTPAHLLK--EIILVDDFSDDPSDGEELERIEKVSVL 127
SVI+ +N + L + V +++ +T L EIIL+DD S D + +
Sbjct: 8 SVIVPIYNVEKY-LDQCVQALLAQT----LSDIEIILIDDESPDNC-PKICDDYAA---- 57
Query: 128 RNDKR--------EGLMRSRVKGADAATAPVLTFLDS 156
GL + G D AT + F DS
Sbjct: 58 -QYPNIKVIHKKNAGLGMACNSGLDVATGEYVAFCDS 93
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 33.2 bits (75), Expect = 0.027
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 20/104 (19%)
Query: 69 TSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDD------PSDGEELERIE 122
+ V+ F +E ++ + AH +L + D E+ R
Sbjct: 2 SLVVFPFKHEHP----EVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRAT 57
Query: 123 KVSVLRNDKREGLMRSRVKG----------ADAATAPVLTFLDS 156
V + KG + + F D+
Sbjct: 58 GTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDA 101
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 29.8 bits (66), Expect = 0.32
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 28 DPYESNKYNQAASDNTPSNRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSV 87
P + + P R S ++ N A + + +
Sbjct: 59 RPLGPASAAEWFRQRSYDYGQFPPEDLARRKRELGLT----VSAVLPSRNVADT--VGGI 112
Query: 88 VSIINRTP--AHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGAD- 144
+ I+ A L+ +I++VD S+D N+ G + KG
Sbjct: 113 IDEIHALNERAPLIDQILVVDADSED-GTAGVAASHGAEVYSENELMSGYGDAHGKGDAM 171
Query: 145 -----AATAPVLTFLDS 156
++ ++D+
Sbjct: 172 WRALSVTRGDLVLYIDA 188
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.74
Identities = 28/178 (15%), Positives = 50/178 (28%), Gaps = 65/178 (36%)
Query: 9 VRYFDESAYLEKGALRPGQDPYESNKYNQAASDNTPSNRDVPDTRHPACT-----RHALP 63
+ F E+ YLE G D + A+ N R
Sbjct: 88 LTEF-ENCYLE------GNDI------HALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 64 RDLPATSVIITFHNEARSALLRSV----VSII-------N------------RTPAHLLK 100
R F ++ SAL R+V ++ N +T L+
Sbjct: 135 R---------PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 101 EII-----LVDDFSDDPSDGEEL--ERIEKVSVLRNDKREGLMRSRVKGADA-ATAPV 150
++I + + D E++ + + + L N S D + P+
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-------PSNTPDKDYLLSIPI 236
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 28.8 bits (64), Expect = 0.86
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 63 PRDLPATSVIITFHNEARSALLRSVVSIINRTPA--HLLKEIILVDDFSDDPSDGEELER 120
+V I N R A + + + P ++ +I+ D D +
Sbjct: 176 APGTANIAVGIPTFN--RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPA 233
Query: 121 IEK 123
Sbjct: 234 AAA 236
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 26.7 bits (60), Expect = 3.1
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 12/47 (25%)
Query: 72 IITFHNEARSALLRSVVSI----------IN-RTPAHLLKEII-LVD 106
I+T H E+ + ++ I IN TPA L+ ++ LVD
Sbjct: 87 IMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVD 133
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 26.3 bits (59), Expect = 4.7
Identities = 9/43 (20%), Positives = 10/43 (23%), Gaps = 11/43 (25%)
Query: 72 IITFHNEARSALLRSVVSI----------IN-RTPAHLLKEII 103
TFH EA + I I T L
Sbjct: 90 QYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWA 132
>3k93_A Phage related exonuclease; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; 2.15A {Haemophilus somnus 129PT}
Length = 223
Score = 25.9 bits (56), Expect = 6.0
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 94 TPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRNDKREGLMRSRVKGADA 145
TP +L+ D ++ RI V + R+++ ++ RV A
Sbjct: 162 TPLNLISAYDSDFKLIDLVEQIPQIRRITTVIIQRDNELIDKIKERVSAAQK 213
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 26.1 bits (58), Expect = 7.1
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 6/20 (30%)
Query: 59 RHALPRDLPA------TSVI 72
++ + ++L A TSVI
Sbjct: 364 KNCVVKNLEAVETLGSTSVI 383
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 25.6 bits (57), Expect = 7.1
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 11/43 (25%)
Query: 72 IITFHNEARSALLRSVVSI----------IN-RTPAHLLKEII 103
I FH EA + RS+ I +N T LK +
Sbjct: 112 SIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVE 154
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 26.1 bits (58), Expect = 7.4
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 6/20 (30%)
Query: 59 RHALPRDLPA------TSVI 72
++ L ++L A TS I
Sbjct: 359 KNCLVKNLEAVETLGSTSTI 378
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 25.2 bits (56), Expect = 8.7
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 13/48 (27%)
Query: 72 IITFHNEARSALL-RSVVSI----------IN-RTPAHLLKEII-LVD 106
IT H E + R + I +N TP +K I D
Sbjct: 83 FITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKAD 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,392,006
Number of extensions: 134556
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 27
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.6 bits)