RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3172
(157 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 96.9 bits (240), Expect = 2e-25
Identities = 39/78 (50%), Positives = 50/78 (64%)
Query: 46 NRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILV 105
NR +PD R C P +LP TSV+I FHNEA S LLR+V S+INR+P H+++EI+LV
Sbjct: 1 NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLV 60
Query: 106 DDFSDDPSDGEELERIEK 123
DD S+ LE K
Sbjct: 61 DDASERDFLKRPLESYVK 78
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 50.4 bits (120), Expect = 1e-08
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 22/106 (20%)
Query: 69 TSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERI------- 121
+ V+ F +E LL V + P + E++ + D E +ER
Sbjct: 1 SLVVFPFKHEHPEVLLH-NVRVAAAHP--RVHEVLCIGYERDQ--TYEAVERAAPEISRA 55
Query: 122 ----------EKVSVLRNDKREGLMRSRVKGADAATAPVLTFLDSH 157
E++ LR K +G+ + + + F D+
Sbjct: 56 TGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDAD 101
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
protein SpsA {Bacillus subtilis [TaxId: 1423]}
Length = 255
Score = 45.1 bits (105), Expect = 8e-07
Identities = 14/47 (29%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 67 PATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPS 113
P SVI+T +N++ + +S+ SI+++T + E+ ++DD S++ +
Sbjct: 1 PKVSVIMTSYNKSDY-VAKSISSILSQTFSDF--ELFIMDDNSNEET 44
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 41.2 bits (95), Expect = 1e-05
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 66 LPATSVIITFHNEARSALLRSVVSIINRTPAHLLKEIILVDDFSDDPSDGEELERIEKVS 125
L + ++I+ +N LLR + H K I++ ++ + +
Sbjct: 2 LDSFTLIMQTYNRTDL-LLRLLNHYQAVPSLH--KVIVVWNNVGEKGPEELWNSLGPHPI 58
Query: 126 VLR-NDKREGLMRSRVKGADAATAPVLTFLDSH 157
+ + MR+R++ + +D
Sbjct: 59 PVIFKPQTANKMRNRLQVFPEVETNAVLMVDDD 91
>d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis)
[TaxId: 45596]}
Length = 319
Score = 26.5 bits (57), Expect = 1.6
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 80 RSALLRSVVSIIN-RTPAHLLKEIILVDDFSDDPSDGEELERIEK 123
R A R + I P L + + F D EE+ +++
Sbjct: 259 RWAAQRGIAVIPKSNLPERL-VQNRSFNTFDLTKEDFEEIAKLDI 302
>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 319
Score = 26.1 bits (56), Expect = 2.0
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 80 RSALLRSVVSIIN-RTPAHLLKEIILVDDFSDDPSDGEELERIEK 123
R L R VV +I + KE+ V +F D + L+ + +
Sbjct: 258 RYQLQRGVVPLIRSFNAKRI-KELTQVFEFQLASEDMKALDGLNR 301
>d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 25.7 bits (55), Expect = 3.2
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 80 RSALLRSVVSIIN-RTPAHLLKEIILVDDFSDDPSDGEELERIEK 123
R L R VV + + ++ + V +F D + ++ +++
Sbjct: 253 RYQLQRGVVVLAKSYNEQRI-RQNVQVFEFQLTAEDMKAIDGLDR 296
>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.3 bits (54), Expect = 3.2
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 80 RSALLRSVVSII-NRTPAHLLKEIILVDDFSDDPSDGEELERIEKVSVLRND 130
R L +V I + TP+ + E V DF D + E+ ++++ L D
Sbjct: 218 RWHLDSGLVVIPKSVTPSRI-AENFDVWDFRLDKDELGEIAKLDQGKRLGPD 268
>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced)
protein {Mouse (Mus musculus) [TaxId: 10090]}
Length = 315
Score = 25.3 bits (54), Expect = 4.2
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 46 NRDVPDTRHPACTRHALPRDLPATSVIITFHNEARSALLRSVVSIIN-RTPAHLLKEIIL 104
D P A + + V+I FH + R+VV I TP+ + +E I
Sbjct: 222 PEDPSLLEDPKIKEIAAKHEKTSAQVLIRFH------IQRNVVVIPKSVTPSRI-QENIQ 274
Query: 105 VDDFSDDPSDGEELERIEK 123
V DF + + +
Sbjct: 275 VFDFQLSDEEMATILSFNR 293
>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 324
Score = 24.9 bits (53), Expect = 4.7
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 80 RSALLRSVVSIIN-RTPAHLLKEIILVDDFSDDPSDGEELERIEK 123
R + R V+ I TP+ + + I V DF+ P + ++L+ + K
Sbjct: 250 RWQVQRKVICIPKSVTPSRI-PQNIQVFDFTFSPEEMKQLDALNK 293
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 422
Score = 24.2 bits (52), Expect = 8.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 9 VRYFDESAYLEKGALRPGQ 27
+ DE+ +EKG L PG+
Sbjct: 371 MVKIDETQVIEKGRLGPGE 389
>d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 314
Score = 24.1 bits (51), Expect = 8.7
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 80 RSALLRSVVSIIN-RTPAHLLKEIILVDDFSDDPSDGEELERIEK 123
R + R++V I TP + E V DF D L +
Sbjct: 251 RFPMQRNLVVIPKSVTPERI-AENFKVFDFELSSQDMTTLLSYNR 294
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 568,778
Number of extensions: 24473
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 18
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.0 bits)