BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3174
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKR|A Chain A, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 291
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 130/254 (51%), Gaps = 46/254 (18%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXX---XXXXXXXX 66
DELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ
Sbjct: 1 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS 60
Query: 67 XXXXXSCIKVLAEYLSIPSKNGS-----------------SNF----------------- 92
+++ AEYL+ S+ + + F
Sbjct: 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120
Query: 93 ------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV +A +
Sbjct: 121 LRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSEDTLINN 203
KL +A+Y Q++ DK T +L+N Q A +AQ ++E A +LQ D +TLIN
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240
Query: 204 MVTAGRLGKGNEMS 217
+V + LGK E++
Sbjct: 241 VVLSQHLGKPPEVT 254
>pdb|3MV2|B Chain B, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|D Chain D, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|F Chain F, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 310
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 13 FDVRNSYYLGNYQQCIKEGQRL-KATDPKVLLEKDFYVCRSYLA 55
F+++ +YY GN+ QC++E ++ K TD +L FY ++ LA
Sbjct: 18 FNIKQNYYTGNFVQCLQEIEKFSKVTDNTLL----FYKAKTLLA 57
>pdb|3MV3|B Chain B, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|D Chain D, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|F Chain F, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 310
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 13 FDVRNSYYLGNYQQCIKEGQRL-KATDPKVLLEKDFYVCRSYLA 55
F+++ +YY GN+ QC++E ++ K TD +L FY ++ LA
Sbjct: 18 FNIKQNYYTGNFVQCLQEIEKFSKVTDNTLL----FYKAKTLLA 57
>pdb|3CDX|A Chain A, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|B Chain B, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|C Chain C, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|D Chain D, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|E Chain E, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|F Chain F, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
Length = 354
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 132 TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAW 186
T + W+H +VD +D I +G+ P V AV + + Y + W
Sbjct: 290 TGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGDAVAVVMEDYNDTW 344
>pdb|3N8U|A Chain A, Crystal Structure Of An Imelysin Peptidase (Bacova_03801)
From Bacteroides Ovatus At 1.44 A Resolution
pdb|3N8U|B Chain B, Crystal Structure Of An Imelysin Peptidase (Bacova_03801)
From Bacteroides Ovatus At 1.44 A Resolution
pdb|3OYV|A Chain A, Crystal Structure Of An Imelysin Peptidase (Bacova_03801)
From Bacteroides Ovatus Atcc 8483 At 1.25 A Resolution
Length = 361
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 98 INALKIHTYLTMY-RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQ 156
++A+ + TY ++ +ND + V+ D + C AW+ +K +EAF L
Sbjct: 234 VDAVVVPTYKSLKEKNDALYNAVIVLADNPSNSAFETACDAWITAREPWEK-SEAF--LF 290
Query: 157 DLIDKYG------STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197
+D+ G S P+ NA V +L +Q +W L+ + GD E
Sbjct: 291 GPVDEXGLDPNXDSWPLDQNAIVQILNSQ-----SWSDLEWSEGDDE 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,449,157
Number of Sequences: 62578
Number of extensions: 278452
Number of successful extensions: 382
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 10
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)