BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3174
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28104|COPE_BOVIN Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3
Length = 308
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 145/262 (55%), Gaps = 46/262 (17%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+KY V
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF--------- 92
VL+E P EL +++ AEYL+ S+ + + F
Sbjct: 69 VLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 128
Query: 93 --------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AW
Sbjct: 129 YDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 188
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
V +A +KL +A+Y Q++ DK T +L+N Q A +AQ ++E A +LQ D
Sbjct: 189 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 248
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+TLIN +V + LGK E++
Sbjct: 249 HPETLINLVVLSQHLGKPPEVT 270
>sp|O89079|COPE_MOUSE Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3
Length = 308
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 144/261 (55%), Gaps = 46/261 (17%)
Query: 3 STADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVV 62
S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+KY VV
Sbjct: 10 SGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVV 69
Query: 63 LEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF---------- 92
L+E P EL +++ AEYL+ ++ S + F
Sbjct: 70 LDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFH 129
Query: 93 -------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWV 139
G LE A+ I L + R DLA KELK MQD+DED TLTQL +AWV
Sbjct: 130 DQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWV 189
Query: 140 HIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDS 196
++A +KL EA+Y Q+L DK T +L+N Q A AQ ++E A +LQ D
Sbjct: 190 NLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGH 249
Query: 197 EDTLINNMVTAGRLGKGNEMS 217
+TLIN +V + LGK E++
Sbjct: 250 PETLINLIVLSQHLGKPPEVT 270
>sp|Q5RFR8|COPE_PONAB Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1
Length = 308
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 144/262 (54%), Gaps = 46/262 (17%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+K+ V
Sbjct: 9 TSGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPETDVERDVFLYRAYLAQRKFGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF--------- 92
VL+E P EL +++ A+YL+ S+ S + F
Sbjct: 69 VLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYL 128
Query: 93 --------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
G LE A+ + L + R DLA KELK MQD DED TLTQL +AW
Sbjct: 129 HDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAW 188
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
V +A +KL +A+Y Q++ DK T +L+N Q A +AQ ++E A LLQ D
Sbjct: 189 VSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSG 248
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+TL+N +V + LGK E++
Sbjct: 249 YPETLVNLIVLSQHLGKPPEVT 270
>sp|O14579|COPE_HUMAN Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3
Length = 308
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 144/262 (54%), Gaps = 46/262 (17%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ+K+ V
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF--------- 92
VL+E P EL +++ A+YL+ S+ S + F
Sbjct: 69 VLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYL 128
Query: 93 --------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
G LE A+ + L + R DLA KELK MQD DED TLTQL +AW
Sbjct: 129 HDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAW 188
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
V +A +KL +A+Y Q++ DK T +L+N Q A +AQ ++E A LLQ D
Sbjct: 189 VSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSG 248
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+TL+N +V + LGK E++
Sbjct: 249 YPETLVNLIVLSQHLGKPPEVT 270
>sp|Q60445|COPE_CRIGR Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2
Length = 308
Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 144/262 (54%), Gaps = 46/262 (17%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P +E+D ++ R+Y+AQ+KY V
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGV 68
Query: 62 VLEEKLPE---ELSCIKVLAEYLSIPSKNGS-----------------SNF--------- 92
VL+E P EL +++ A+YL+ ++ + + F
Sbjct: 69 VLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYF 128
Query: 93 --------------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAW 138
G LE A+ I L + R DLA KELK MQD+DED TLTQL +AW
Sbjct: 129 HDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 188
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGD 195
V++A +KL EA+Y Q+L DK T +L+N Q A AQ ++E A +LQ D
Sbjct: 189 VNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSG 248
Query: 196 SEDTLINNMVTAGRLGKGNEMS 217
+TLIN +V + LGK E++
Sbjct: 249 HPETLINLIVLSQHLGKPPEVT 270
>sp|Q5ZIK9|COPE_CHICK Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1
Length = 308
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 140/254 (55%), Gaps = 46/254 (18%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE---K 66
DELFDV+NS+Y+G YQ I E QR+K ++P+ E+D ++ RSY+AQ+KY VVL+E
Sbjct: 17 DELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKAN 76
Query: 67 LPEELSCIKVLAEYLSIPSKN-----------------GSSNF----------------- 92
EL +++ AEYLS S+ ++ F
Sbjct: 77 ASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAA 136
Query: 93 ------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
G LE A+ I L + R DLA KELK MQ++DED TLTQL +AWV++A +
Sbjct: 137 LRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGE 196
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSEDTLINN 203
KL +A+Y Q++ DK ST +L+N Q A +AQ K+++A +LQ D +TLIN
Sbjct: 197 KLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINF 256
Query: 204 MVTAGRLGKGNEMS 217
+V + LGK E++
Sbjct: 257 VVLSQHLGKPPEVT 270
>sp|Q9SA78|COPE1_ARATH Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630
PE=2 SV=1
Length = 292
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 130/263 (49%), Gaps = 52/263 (19%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL---EEK 66
D LF++RN +YLG YQ I + + + ++E+D V R+Y+A Y++V+ +E
Sbjct: 8 DHLFNLRNHFYLGAYQAAINNSE-IPNLSQEDIVERDCLVHRAYIALGSYQLVISEIDEA 66
Query: 67 LPEELSCIKVLAEYLSIPSKNGSS------------------------------------ 90
L +K+LA YLS P S+
Sbjct: 67 AATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEA 126
Query: 91 ----NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
+ G ++++AL + ++ M+R+D A K+L+VMQ DEDHTLTQL SAW+++A
Sbjct: 127 LKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 186
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSED--TLINN 203
K+ EA+ QD +KY T +++N + + +EEA LL + D++D TL N
Sbjct: 187 KIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANL 246
Query: 204 MVTAGRLGKG-----NEMSVSPP 221
+V + +GK N++ +S P
Sbjct: 247 VVCSLHVGKSSSRYLNQLKLSHP 269
>sp|O64748|COPE2_ARATH Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840
PE=2 SV=1
Length = 293
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 126/256 (49%), Gaps = 47/256 (18%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL---EEK 66
D LF++RN++YLG YQ I + + P+ +E+D V RSY+A Y++V+ +E
Sbjct: 9 DHLFNLRNNFYLGAYQTAINNSE-IANLSPENAVERDCLVFRSYIALGSYQLVISEIDES 67
Query: 67 LPEELSCIKVLAEYLSIPSKNGSS------------------------------------ 90
L +K+LA YLS P S+
Sbjct: 68 AATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNET 127
Query: 91 ----NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD 146
+ G +++ AL + ++ M+R + A K+L+VMQ DEDHTLTQL SAW+++A
Sbjct: 128 LKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 187
Query: 147 KLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSED--TLINN 203
K+ EA+ +D +KY T +++N + + ++EA LL + D++D TL N
Sbjct: 188 KIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANL 247
Query: 204 MVTAGRLGKGNEMSVS 219
+V + +GK + +S
Sbjct: 248 VVCSLHVGKSSSRHLS 263
>sp|P0C541|COPE2_ORYSJ Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica
GN=Os04g0644700 PE=3 SV=1
Length = 297
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 57/268 (21%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRL---KATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK 66
D LF +RNS+Y+G YQ I Q + A P L E+D + RSY+A +++V++E
Sbjct: 8 DHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67
Query: 67 LP---EELSCIKVLAEYLSIPSKNGSS--------------------------------- 90
P L +++L YLS + S
Sbjct: 68 GPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERD 127
Query: 91 --------NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA 142
N G +E+ A+ + L M+R+D A K+L++MQ DEDHTLTQL +AWV +
Sbjct: 128 YAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLV 187
Query: 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDT----AGDSED 198
K+ EA QDL +KY +T +++N + L+ +E+A LL ++ A D+E
Sbjct: 188 MGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAE- 246
Query: 199 TLINNMVTAGRLGKG-----NEMSVSPP 221
TL N +V + LGK N++ ++ P
Sbjct: 247 TLANLVVCSLNLGKSASRYLNQLKLAHP 274
>sp|A2XY73|COPE2_ORYSI Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica
GN=H0413E07.10 PE=3 SV=2
Length = 297
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 57/268 (21%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRL---KATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK 66
D LF +R S+Y+G YQ I Q + A P L E+D + RSY+A +++V++E
Sbjct: 8 DHLFGLRYSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67
Query: 67 LP---EELSCIKVLAEYLSIPSKNGSS--------------------------------- 90
P L +++LA YLS + S
Sbjct: 68 GPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERD 127
Query: 91 --------NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA 142
N G +E+ A+ + L M+R+D A K+L++MQ DEDHTLTQL +AWV +
Sbjct: 128 YAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLV 187
Query: 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDT----AGDSED 198
K+ EA QDL +KY +T +++N + L+ +E+A LL ++ A D+E
Sbjct: 188 MGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAE- 246
Query: 199 TLINNMVTAGRLGKG-----NEMSVSPP 221
TL N +V + LGK N++ ++ P
Sbjct: 247 TLANLVVCSLNLGKSASRYLNQLKLAHP 274
>sp|Q9MAX6|COPE1_ORYSJ Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1
PE=2 SV=1
Length = 287
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 119/247 (48%), Gaps = 45/247 (18%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE---K 66
D LF++RN +YLG YQ I + D E+D V RSY+A Y++V+ E
Sbjct: 5 DLLFNLRNLFYLGAYQAAINNSD-VPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSS 63
Query: 67 LPEELSCIKVLAEYLS--------------IPSKNGS----------------------- 89
L +K+LA YLS S GS
Sbjct: 64 AATSLQAVKLLALYLSGDKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALK 123
Query: 90 -SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKL 148
++ G L+++AL + ++ M+R+D A K+LK+MQ DEDHTLTQL +AW+ IA K+
Sbjct: 124 HTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKI 183
Query: 149 NEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSED--TLINNMV 205
EA+ QD +KY T M++N + + ++EA LL + D++D TL N +V
Sbjct: 184 REAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLANLIV 243
Query: 206 TAGRLGK 212
LGK
Sbjct: 244 CNLHLGK 250
>sp|O62246|COPE_CAEEL Coatomer subunit epsilon OS=Caenorhabditis elegans GN=F45G2.4 PE=3
SV=1
Length = 292
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 111/245 (45%), Gaps = 48/245 (19%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPE 69
D+LF +RN ++LG+YQ CI E + + + + EKD Y+ RSY+AQ + + L+E +P
Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKE-IPA 61
Query: 70 -----ELSCIKVLAEYLSIP---------------SKNGSSNFGT--------------- 94
+L+ ++ AE+ + P S+N S
Sbjct: 62 ATKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATILNEADLSQD 121
Query: 95 ---------HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV 145
LE A K+ + M + LA+ E+K M DED TL+QL +A V
Sbjct: 122 AFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGAS 181
Query: 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ---DTAGDSEDTLIN 202
K+ +A Y ++ DKYG T L Q V I Y A +LL+ + D LIN
Sbjct: 182 GKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQDYAAAEELLESALERDNKDADVLIN 241
Query: 203 NMVTA 207
++V+A
Sbjct: 242 SIVSA 246
>sp|Q55FU2|COPE_DICDI Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3
SV=1
Length = 300
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 118/261 (45%), Gaps = 54/261 (20%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQR--LKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKL 67
D LF+ +N +YLGNYQ I E + + + + E D+++ R Y+AQ Y +VL+E
Sbjct: 4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETK 63
Query: 68 PEE-------LSCIKVLAEYLSIPSKN--------------GSSNFGTHLEI-------- 98
++ +++LA YLS P +N G F HL++
Sbjct: 64 NNRGSGEDPTIAGLQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFN 123
Query: 99 -----NALK--------------IHTYLTMYRNDLALKELKVMQD-KDEDHTLTQLCSAW 138
AL+ I +L + R DLA K M+ D D T L AW
Sbjct: 124 EQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAW 183
Query: 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTA---GD 195
++I N +KL A + +++ ++YG TP+L+N Q I ++E+A LL ++
Sbjct: 184 INIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCAIGMKRFEKAESLLLESIEKNPK 243
Query: 196 SEDTLINNMVTAGRLGKGNEM 216
+ DTL N + + K NE+
Sbjct: 244 NSDTLANLINCYINMKKPNEI 264
>sp|O74767|COPE_SCHPO Probable coatomer subunit epsilon OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec28 PE=1 SV=1
Length = 288
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 54/241 (22%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKV-------- 61
+EL+ VR +Y GNY +L D + EK + Y+A+ K +
Sbjct: 10 NELYFVRQYFYSGNYT-------KLFEIDTTSMSEKGLELTEIYMARAKLALGESLESIQ 62
Query: 62 -VLEEKLPE-------------EL---------SCIKVLAEYLSIPSKNGSSNFGT---- 94
+L +K P EL S ++ L I KNGS +
Sbjct: 63 SILTQKTPGSAAILALAGEGNMELIIDQHGNSDSVVQTLGAIFQI--KNGSFDDAMDLLK 120
Query: 95 ----HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHI-ANNVDKLN 149
+LE AL+++ +L ++ + A + LK D ++ + QL +W+ I + V+ N
Sbjct: 121 KSVENLEAVALQVYIHLREHKIEAAEQTLKQALDWADEEIVLQLAQSWIKIVSGGVESYN 180
Query: 150 EAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE---DTLINNMVT 206
+AFY ++L + S PM + I + EEA L+ TA DS+ + ++NM T
Sbjct: 181 DAFYVFEEL-NGTDSNPMTLTGMACADICLLRPEEALSSLK-TALDSQPNYEEALSNMTT 238
Query: 207 A 207
A
Sbjct: 239 A 239
>sp|B1VET0|EFG_CORU7 Elongation factor G OS=Corynebacterium urealyticum (strain ATCC
43042 / DSM 7109) GN=fusA PE=3 SV=1
Length = 702
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 129 HTLTQLCSAWVHIANNVDKLNEAFY-TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWD 187
+ + +LC N +DKL FY T+Q +ID+ G+ P+++ + A+D +E D
Sbjct: 128 YDVPRLC-----FVNKMDKLGADFYHTVQTIIDRLGAKPLVMELPIG---AEDDFEGVVD 179
Query: 188 LLQ 190
LLQ
Sbjct: 180 LLQ 182
>sp|P40509|COPE_YEAST Coatomer subunit epsilon OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC28 PE=1 SV=2
Length = 296
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 13 FDVRNSYYLGNYQQCIKEGQRL-KATDPKVLLEKDFYVCRSYLAQKKYK 60
F+++ +YY GN+ QC++E ++ K TD +L FY ++ LA +Y+
Sbjct: 4 FNIKQNYYTGNFVQCLQEIEKFSKVTDNTLL----FYKAKTLLALGQYQ 48
>sp|Q5ZKK3|APC5_CHICK Anaphase-promoting complex subunit 5 OS=Gallus gallus GN=ANAPC5
PE=2 SV=1
Length = 756
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 87 NGSSNFGTHLEINALKI---HTYLTMYRN-DLALKELKVMQDKDEDHTLTQLCSAWVHIA 142
NG +G L AL + H Y+ +LAL+E + + DH Q C +W+HI+
Sbjct: 291 NGDEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLHIS 350
Query: 143 NNVDKLNEAFYTLQDLIDK--YGSTPMLVNAQVAVLIAQDKYE-EAWDLLQDTAGDSE 197
K+ ++ L+ ++K + P L + + L+ Q + +A + L D DS+
Sbjct: 351 E--QKIFDSCVLLEHSVNKSLHFGLPYLASLGIQSLVQQRAFAGKAANKLMDALKDSD 406
>sp|Q12749|SMC6_YEAST Structural maintenance of chromosomes protein 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SMC6 PE=1
SV=1
Length = 1114
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 36/184 (19%)
Query: 36 ATDPKVLLEKDFYVCRSYL----AQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSN 91
++P L +D RS+L +Q KY ++ L +E++ + Y S + N
Sbjct: 215 VSNPMCFLSQD--AARSFLTASTSQDKYSHFMKGTLLQEITENLL---YASAIHDSAQEN 269
Query: 92 FGTHLE-INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN------ 144
HLE + +LK Y + L+EL D +E L Q S W+ +A+N
Sbjct: 270 MALHLENLKSLKAE-YEDAKK---LLRELNQTSDLNERKMLLQAKSLWIDVAHNTDACKN 325
Query: 145 -----------VDKLNEAFYTLQDLIDKYGSTPMLVNAQV--AVLIAQDK---YEEAWDL 188
VD++ E Q+ I++Y S + AQ+ V+ +K ++ A +L
Sbjct: 326 LENEISGIQQKVDEVTEKIRNRQEKIERYTSDGTTIEAQIDAKVIYVNEKDSEHQNAREL 385
Query: 189 LQDT 192
L+D
Sbjct: 386 LRDV 389
>sp|Q1MRF2|GCP_LAWIP Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=gcp
PE=3 SV=1
Length = 355
Score = 34.3 bits (77), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFY-VCRSYL 54
+ YL Y Q I+EGQR + + KV ++++ Y VC SYL
Sbjct: 217 AMYLKQYPQLIEEGQRYCSNNSKVAIKEELYNVCSSYL 254
>sp|Q4R8Y1|BRDT_MACFA Bromodomain testis-specific protein OS=Macaca fascicularis GN=BRDT
PE=2 SV=3
Length = 947
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 55 AQKKYKVVLEEKLPEELS-CIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRND 113
+Q++Y VV K+ E+L C ++L E L+ + + F +++NAL +H Y + +N
Sbjct: 257 SQQQYNVVKSVKVTEQLRHCSEILKEMLAKKHFSYAWPFYNPVDVNALGLHNYYDIVKNP 316
Query: 114 LALKELKVMQDKDE 127
+ L +K D E
Sbjct: 317 MDLGTIKEKMDNQE 330
>sp|Q6NJD6|EFG_CORDI Elongation factor G OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=fusA PE=3 SV=2
Length = 704
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 143 NNVDKLNEAFY-TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190
N +DKL FY T+Q +ID+ G+ P+++ + A+D ++ DLL+
Sbjct: 133 NKMDKLGADFYFTVQTIIDRLGAKPLVMQLPIG---AEDDFDGVVDLLE 178
>sp|Q58F21|BRDT_HUMAN Bromodomain testis-specific protein OS=Homo sapiens GN=BRDT PE=1
SV=4
Length = 947
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 55 AQKKYKVVLEEKLPEELS-CIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRND 113
+Q++Y VV K+ E+L C ++L E L+ + + F +++NAL +H Y + +N
Sbjct: 257 SQQQYNVVKTVKVTEQLRHCSEILKEMLAKKHFSYAWPFYNPVDVNALGLHNYYDVVKNP 316
Query: 114 LALKELKVMQDKDE 127
+ L +K D E
Sbjct: 317 MDLGTIKEKMDNQE 330
>sp|Q8BTZ4|APC5_MOUSE Anaphase-promoting complex subunit 5 OS=Mus musculus GN=Anapc5 PE=2
SV=1
Length = 740
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 21/177 (11%)
Query: 87 NGSSNFGTHLEINALKI---HTYLTMYRN-DLALKELKVMQDKDEDHTLTQLCSAWVHIA 142
NG +G L AL + H Y+ +LAL+E + + DH Q C +W+++
Sbjct: 276 NGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVL 335
Query: 143 NNVDKLNEAFYTLQDLIDK--YGSTPMLVNAQVAVLIAQDKYE-EAWDLLQDTAGDSE-- 197
K +++ L+ + K + P L + + L+ Q + + + L D DS+
Sbjct: 336 GQ--KRADSYVLLEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLL 393
Query: 198 ----------DTLINNMVTAGRLGKGNEMSVSPPFLFRSDETTATLDACGLQSNSES 244
D I RL + M++ + S + +L+A Q+N+ES
Sbjct: 394 HWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLESLNAGVQQNNTES 450
>sp|C3PKP1|EFG_CORA7 Elongation factor G OS=Corynebacterium aurimucosum (strain ATCC
700975 / DSM 44827 / CN-1) GN=fusA PE=3 SV=1
Length = 708
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 139 VHIANNVDKLNEAFY-TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLL 189
V N +DKL FY T+Q +ID+ G+ P+++ + A+D ++ DL+
Sbjct: 133 VCFVNKMDKLGADFYFTVQTIIDRLGAKPLVMQLPIG---AEDDFDGVVDLI 181
>sp|Q5RE52|APC5_PONAB Anaphase-promoting complex subunit 5 OS=Pongo abelii GN=ANAPC5 PE=2
SV=1
Length = 755
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 21/177 (11%)
Query: 87 NGSSNFGTHLEINALKI---HTYLTMYRN-DLALKELKVMQDKDEDHTLTQLCSAWVHIA 142
NG +G L AL + H Y+ +LAL+E + + DH Q C +W+++
Sbjct: 291 NGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVL 350
Query: 143 NNVDKLNEAFYTLQDLIDK--YGSTPMLVNAQVAVLIAQDKYE-EAWDLLQDTAGDSE-- 197
K ++++ L+ + K + P L + + L+ Q + + + L D DS+
Sbjct: 351 GQ--KRSDSYVLLEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLL 408
Query: 198 ----------DTLINNMVTAGRLGKGNEMSVSPPFLFRSDETTATLDACGLQSNSES 244
D I RL + M++ + S + ++A Q+N+ES
Sbjct: 409 HWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTES 465
>sp|Q9UJX4|APC5_HUMAN Anaphase-promoting complex subunit 5 OS=Homo sapiens GN=ANAPC5 PE=1
SV=2
Length = 755
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 21/177 (11%)
Query: 87 NGSSNFGTHLEINALKI---HTYLTMYRN-DLALKELKVMQDKDEDHTLTQLCSAWVHIA 142
NG +G L AL + H Y+ +LAL+E + + DH Q C +W+++
Sbjct: 291 NGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVL 350
Query: 143 NNVDKLNEAFYTLQDLIDK--YGSTPMLVNAQVAVLIAQDKYE-EAWDLLQDTAGDSE-- 197
K ++++ L+ + K + P L + + L+ Q + + + L D DS+
Sbjct: 351 GQ--KRSDSYVLLEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLL 408
Query: 198 ----------DTLINNMVTAGRLGKGNEMSVSPPFLFRSDETTATLDACGLQSNSES 244
D I RL + M++ + S + ++A Q+N+ES
Sbjct: 409 HWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEAVNAGVQQNNTES 465
>sp|C0ZVT6|EFG_RHOE4 Elongation factor G OS=Rhodococcus erythropolis (strain PR4 / NBRC
100887) GN=fusA PE=3 SV=1
Length = 700
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 143 NNVDKLNEAFY-TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190
N +DK+ FY T+Q +ID+ G+ P+++ + A+D ++ DL++
Sbjct: 137 NKMDKMGADFYFTVQTIIDRLGAKPLVLQLPIG---AEDDFDGVVDLVE 182
>sp|C1AYS4|EFG_RHOOB Elongation factor G OS=Rhodococcus opacus (strain B4) GN=fusA PE=3
SV=1
Length = 700
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 143 NNVDKLNEAFY-TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190
N +DK+ FY T+Q +ID+ G+ P+++ + A+D ++ DL++
Sbjct: 137 NKMDKMGADFYFTVQTIIDRLGAKPLVLQLPIG---AEDDFDGVVDLVE 182
>sp|Q0SFF3|EFG_RHOSR Elongation factor G OS=Rhodococcus sp. (strain RHA1) GN=fusA PE=3
SV=1
Length = 700
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 143 NNVDKLNEAFY-TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190
N +DK+ FY T+Q +ID+ G+ P+++ + A+D ++ DL++
Sbjct: 137 NKMDKMGADFYFTVQTIIDRLGAKPLVLQLPIG---AEDDFDGVVDLVE 182
>sp|D4A7T3|BRDT_RAT Bromodomain testis-specific protein OS=Rattus norvegicus GN=Brdt
PE=1 SV=1
Length = 952
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 55 AQKKYKVVLEEKLPEELS-CIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRND 113
+Q++++V+ K+ E+L C ++L E L+ + F ++++AL +H Y + +N
Sbjct: 256 SQQQHRVLKTVKVTEQLKHCSEILKEMLAKKHLPYAWPFYNPVDVDALGLHNYYDIVKNP 315
Query: 114 LALKELKVMQDKDE 127
+ L +K DK E
Sbjct: 316 MDLGTIKGKMDKQE 329
>sp|Q88X05|PRSA1_LACPL Foldase protein PrsA 1 OS=Lactobacillus plantarum (strain ATCC
BAA-793 / NCIMB 8826 / WCFS1) GN=prsA1 PE=3 SV=1
Length = 298
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 62 VLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKE 118
VLE+ ++S +V +Y + S+ GSS F T L N L T+ R++L LKE
Sbjct: 60 VLEKDYGSKVSTKQVTKQYNTYKSQYGSS-FSTVLSQNGLTTKTFKEQLRSNLLLKE 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,344,842
Number of Sequences: 539616
Number of extensions: 4074640
Number of successful extensions: 7465
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 7426
Number of HSP's gapped (non-prelim): 56
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)