Query psy3174
Match_columns 265
No_of_seqs 142 out of 309
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:14:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3081|consensus 100.0 1.7E-61 3.7E-66 423.1 22.0 241 1-243 1-298 (299)
2 PF04733 Coatomer_E: Coatomer 100.0 7.6E-58 1.6E-62 415.1 22.4 232 9-241 2-290 (290)
3 TIGR02917 PEP_TPR_lipo putativ 99.5 5.8E-12 1.3E-16 125.9 21.8 215 8-225 21-265 (899)
4 TIGR02917 PEP_TPR_lipo putativ 99.4 4.3E-11 9.3E-16 119.7 19.7 119 93-214 767-888 (899)
5 TIGR00990 3a0801s09 mitochondr 99.3 8.2E-11 1.8E-15 117.0 20.4 148 93-242 328-492 (615)
6 TIGR00990 3a0801s09 mitochondr 99.3 8.8E-11 1.9E-15 116.8 19.9 175 21-197 307-498 (615)
7 PRK11788 tetratricopeptide rep 99.3 1.8E-10 3.9E-15 107.0 20.7 211 12-223 39-285 (389)
8 PRK15174 Vi polysaccharide exp 99.3 1.9E-10 4.1E-15 115.5 20.2 112 103-216 219-337 (656)
9 PRK15174 Vi polysaccharide exp 99.3 6.4E-10 1.4E-14 111.7 23.1 220 16-240 152-404 (656)
10 PF13429 TPR_15: Tetratricopep 99.3 8.2E-12 1.8E-16 112.0 8.5 123 93-217 143-268 (280)
11 TIGR00540 hemY_coli hemY prote 99.3 2.1E-10 4.6E-15 108.8 18.4 200 14-216 159-389 (409)
12 COG3063 PilF Tfp pilus assembl 99.3 5.2E-11 1.1E-15 103.7 12.7 148 94-243 33-206 (250)
13 PRK09782 bacteriophage N4 rece 99.3 6.3E-10 1.4E-14 115.9 22.0 229 8-241 476-735 (987)
14 PRK11788 tetratricopeptide rep 99.2 2.3E-09 4.9E-14 99.6 19.2 206 17-224 78-319 (389)
15 PRK10747 putative protoheme IX 99.2 1.6E-09 3.4E-14 102.7 18.2 196 15-216 160-380 (398)
16 PRK11447 cellulose synthase su 99.1 2.4E-09 5.3E-14 113.7 19.7 198 17-217 470-731 (1157)
17 PRK12370 invasion protein regu 99.1 3.1E-09 6.8E-14 104.7 18.9 122 93-216 335-460 (553)
18 PRK15359 type III secretion sy 99.1 2.5E-09 5.4E-14 87.5 14.8 115 95-211 23-140 (144)
19 PRK11447 cellulose synthase su 99.1 8.1E-09 1.8E-13 109.8 21.6 200 17-217 278-549 (1157)
20 TIGR02521 type_IV_pilW type IV 99.1 1.5E-08 3.2E-13 85.2 18.1 119 94-214 97-220 (234)
21 TIGR02521 type_IV_pilW type IV 99.1 5.7E-09 1.2E-13 87.7 15.3 122 93-216 62-188 (234)
22 PRK10049 pgaA outer membrane p 99.1 1.5E-08 3.3E-13 103.5 20.8 197 18-231 247-471 (765)
23 PRK09782 bacteriophage N4 rece 99.0 1.5E-08 3.3E-13 105.7 19.8 177 17-198 518-709 (987)
24 PRK10370 formate-dependent nit 99.0 1.2E-08 2.5E-13 88.0 15.1 105 91-195 68-173 (198)
25 PRK12370 invasion protein regu 99.0 4.6E-08 9.9E-13 96.5 20.0 120 91-212 367-490 (553)
26 TIGR02552 LcrH_SycD type III s 99.0 9.7E-09 2.1E-13 81.6 12.6 105 92-198 13-117 (135)
27 PRK15179 Vi polysaccharide bio 99.0 1.3E-08 2.8E-13 102.6 16.4 125 91-217 81-208 (694)
28 PRK15359 type III secretion sy 99.0 5.8E-09 1.3E-13 85.3 10.4 107 115-226 12-131 (144)
29 TIGR03302 OM_YfiO outer membra 98.9 5.2E-08 1.1E-12 84.8 16.3 170 10-197 34-234 (235)
30 KOG1840|consensus 98.9 3.3E-08 7.1E-13 96.2 16.0 206 19-226 176-452 (508)
31 PF13429 TPR_15: Tetratricopep 98.9 4E-09 8.7E-14 94.6 8.8 207 15-226 15-253 (280)
32 PRK10049 pgaA outer membrane p 98.9 6.1E-08 1.3E-12 99.1 17.8 171 15-198 279-459 (765)
33 KOG4626|consensus 98.9 4.4E-08 9.6E-13 95.5 15.2 118 93-215 249-372 (966)
34 PRK15363 pathogenicity island 98.9 2.2E-08 4.9E-13 83.0 11.1 101 90-195 28-132 (157)
35 KOG4626|consensus 98.9 2.2E-08 4.8E-13 97.6 12.4 167 53-224 296-493 (966)
36 TIGR02552 LcrH_SycD type III s 98.9 3.9E-08 8.3E-13 78.1 11.6 99 117-217 4-105 (135)
37 cd00189 TPR Tetratricopeptide 98.8 8.7E-08 1.9E-12 67.8 11.2 98 98-197 2-99 (100)
38 KOG2002|consensus 98.8 1.5E-07 3.2E-12 95.4 15.9 207 5-216 266-515 (1018)
39 KOG1840|consensus 98.8 3.5E-07 7.6E-12 89.0 17.9 201 15-217 206-470 (508)
40 KOG1126|consensus 98.8 4.6E-08 9.9E-13 95.7 10.8 209 8-217 312-577 (638)
41 TIGR03302 OM_YfiO outer membra 98.8 6.9E-07 1.5E-11 77.7 17.0 159 42-216 32-222 (235)
42 TIGR02795 tol_pal_ybgF tol-pal 98.8 2.1E-07 4.6E-12 71.4 12.2 101 96-198 2-108 (119)
43 KOG1129|consensus 98.7 3.8E-08 8.2E-13 90.0 8.1 176 49-228 229-436 (478)
44 PRK14574 hmsH outer membrane p 98.7 1.3E-06 2.9E-11 89.8 19.9 190 21-228 305-525 (822)
45 KOG0547|consensus 98.7 7E-07 1.5E-11 85.2 16.4 159 47-208 323-513 (606)
46 KOG1126|consensus 98.7 1.2E-07 2.6E-12 92.7 11.4 199 12-217 356-611 (638)
47 PRK11189 lipoprotein NlpI; Pro 98.7 2.4E-07 5.2E-12 84.4 12.8 118 92-213 94-212 (296)
48 KOG0624|consensus 98.7 1.1E-06 2.3E-11 81.0 16.4 180 44-223 39-259 (504)
49 KOG1173|consensus 98.7 5.3E-07 1.1E-11 87.1 14.7 210 16-228 252-530 (611)
50 PLN03088 SGT1, suppressor of 98.7 8.1E-07 1.8E-11 83.2 15.2 110 99-210 5-117 (356)
51 PRK15179 Vi polysaccharide bio 98.6 9.1E-07 2E-11 89.5 16.0 123 71-195 86-217 (694)
52 PRK10370 formate-dependent nit 98.6 8.9E-07 1.9E-11 76.3 13.5 104 109-217 52-164 (198)
53 PRK11189 lipoprotein NlpI; Pro 98.6 5.3E-06 1.2E-10 75.5 18.6 164 47-217 68-256 (296)
54 COG5010 TadD Flp pilus assembl 98.6 1.6E-06 3.4E-11 77.0 14.4 126 90-217 94-222 (257)
55 COG3063 PilF Tfp pilus assembl 98.6 7E-07 1.5E-11 78.1 11.9 121 93-216 66-192 (250)
56 KOG0547|consensus 98.5 4.4E-06 9.5E-11 79.9 16.8 105 90-195 456-566 (606)
57 PRK10747 putative protoheme IX 98.5 2.8E-06 6.2E-11 80.5 15.7 226 17-245 93-356 (398)
58 COG5010 TadD Flp pilus assembl 98.5 1.6E-06 3.6E-11 76.8 12.4 124 91-217 62-188 (257)
59 PRK02603 photosystem I assembl 98.5 4.7E-06 1E-10 69.6 14.5 119 92-212 31-166 (172)
60 cd05804 StaR_like StaR_like; a 98.5 1.2E-05 2.5E-10 73.9 18.1 106 90-197 108-217 (355)
61 KOG1155|consensus 98.5 1.7E-06 3.7E-11 82.2 12.5 121 92-217 360-486 (559)
62 CHL00033 ycf3 photosystem I as 98.5 5E-06 1.1E-10 69.1 14.2 116 95-212 34-166 (168)
63 TIGR00540 hemY_coli hemY prote 98.5 4.9E-06 1.1E-10 79.0 15.1 177 16-195 195-399 (409)
64 cd05804 StaR_like StaR_like; a 98.4 2.7E-06 5.8E-11 78.1 12.6 119 95-214 42-165 (355)
65 PF09976 TPR_21: Tetratricopep 98.4 4.2E-06 9.2E-11 68.0 12.0 95 96-193 48-145 (145)
66 PF13432 TPR_16: Tetratricopep 98.4 8.4E-07 1.8E-11 61.9 6.0 53 145-197 10-62 (65)
67 PRK15363 pathogenicity island 98.4 3.1E-06 6.8E-11 70.3 10.0 75 143-217 46-123 (157)
68 PLN03218 maturation of RBCL 1; 98.3 4.7E-05 1E-09 80.5 20.3 122 93-217 611-739 (1060)
69 PF12895 Apc3: Anaphase-promot 98.3 2.5E-06 5.4E-11 62.9 7.6 81 109-192 2-84 (84)
70 PF13414 TPR_11: TPR repeat; P 98.3 1.5E-06 3.2E-11 61.3 6.0 53 145-197 16-69 (69)
71 COG3071 HemY Uncharacterized e 98.3 4.1E-05 9E-10 71.5 16.9 199 12-216 157-380 (400)
72 KOG2376|consensus 98.3 3.7E-05 8E-10 75.0 17.1 196 12-217 16-244 (652)
73 PRK14574 hmsH outer membrane p 98.3 2.7E-05 5.8E-10 80.3 17.1 137 49-198 373-516 (822)
74 PF12688 TPR_5: Tetratrico pep 98.3 1.9E-05 4.1E-10 62.9 12.6 97 97-195 2-104 (120)
75 COG4235 Cytochrome c biogenesi 98.3 1E-05 2.2E-10 73.3 12.2 104 91-195 151-256 (287)
76 PLN03218 maturation of RBCL 1; 98.3 7.5E-05 1.6E-09 79.0 20.5 118 97-216 580-703 (1060)
77 COG4783 Putative Zn-dependent 98.3 1.7E-05 3.6E-10 75.8 14.1 122 93-216 303-427 (484)
78 TIGR02795 tol_pal_ybgF tol-pal 98.3 9.3E-06 2E-10 62.1 10.0 92 130-225 4-114 (119)
79 KOG1129|consensus 98.3 5.9E-06 1.3E-10 75.8 9.9 191 16-211 231-477 (478)
80 PF09976 TPR_21: Tetratricopep 98.3 3E-05 6.4E-10 63.0 13.1 116 99-216 14-137 (145)
81 PRK10803 tol-pal system protei 98.2 1.5E-05 3.3E-10 71.8 12.1 104 96-199 142-250 (263)
82 PF13432 TPR_16: Tetratricopep 98.2 8.9E-06 1.9E-10 56.7 8.3 64 101-166 2-65 (65)
83 KOG2002|consensus 98.2 0.00013 2.9E-09 74.5 19.0 114 94-209 305-426 (1018)
84 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.7E-05 5.9E-10 73.9 13.4 114 99-217 172-288 (395)
85 PLN03081 pentatricopeptide (PP 98.2 5.3E-05 1.2E-09 76.6 16.3 31 94-124 288-318 (697)
86 KOG1125|consensus 98.2 7.6E-05 1.6E-09 72.6 15.7 116 94-214 428-559 (579)
87 COG1729 Uncharacterized protei 98.2 1.6E-05 3.5E-10 71.1 10.2 103 97-199 142-248 (262)
88 PF04733 Coatomer_E: Coatomer 98.2 9.3E-05 2E-09 67.5 15.5 85 111-197 182-267 (290)
89 PF14559 TPR_19: Tetratricopep 98.1 3.6E-06 7.7E-11 59.0 4.6 54 145-198 4-57 (68)
90 KOG2076|consensus 98.1 5.2E-05 1.1E-09 76.8 14.4 113 101-217 382-503 (895)
91 PLN03081 pentatricopeptide (PP 98.1 0.00014 3E-09 73.7 17.7 143 96-241 391-552 (697)
92 PLN03088 SGT1, suppressor of 98.1 2.2E-05 4.7E-10 73.6 10.5 84 144-227 14-110 (356)
93 PLN03077 Protein ECB2; Provisi 98.1 0.00015 3.3E-09 74.9 17.4 67 146-216 538-608 (857)
94 KOG1174|consensus 98.0 0.0002 4.4E-09 67.6 15.3 197 16-215 240-489 (564)
95 cd00189 TPR Tetratricopeptide 98.0 3.4E-05 7.3E-10 54.2 7.9 70 145-214 13-85 (100)
96 PRK15331 chaperone protein Sic 98.0 2.4E-05 5.1E-10 65.5 7.7 102 92-195 33-134 (165)
97 KOG0624|consensus 98.0 0.00041 9E-09 64.3 16.2 165 14-198 161-373 (504)
98 PRK10866 outer membrane biogen 98.0 0.00077 1.7E-08 59.9 17.7 168 8-191 31-237 (243)
99 PF13424 TPR_12: Tetratricopep 98.0 1E-05 2.2E-10 58.4 4.5 49 146-194 19-74 (78)
100 PF13525 YfiO: Outer membrane 98.0 0.00026 5.6E-09 61.0 14.0 163 8-186 4-198 (203)
101 PRK10153 DNA-binding transcrip 98.0 0.00015 3.3E-09 71.2 13.9 125 93-217 334-473 (517)
102 PF13414 TPR_11: TPR repeat; P 98.0 7E-05 1.5E-09 52.6 8.4 68 94-163 1-69 (69)
103 PLN03077 Protein ECB2; Provisi 98.0 0.00085 1.9E-08 69.5 19.8 188 20-217 335-574 (857)
104 PF12895 Apc3: Anaphase-promot 97.9 1.1E-05 2.5E-10 59.3 4.3 71 145-216 2-77 (84)
105 PRK15331 chaperone protein Sic 97.9 0.00026 5.7E-09 59.2 12.4 106 119-226 26-143 (165)
106 PF13525 YfiO: Outer membrane 97.9 0.00078 1.7E-08 58.0 15.7 154 45-214 7-195 (203)
107 KOG4162|consensus 97.9 0.00075 1.6E-08 67.7 17.3 118 97-216 651-773 (799)
108 KOG0553|consensus 97.9 0.00018 3.8E-09 65.3 11.9 107 105-215 90-201 (304)
109 PRK14720 transcript cleavage f 97.9 0.00016 3.6E-09 74.7 13.0 122 90-216 24-168 (906)
110 CHL00033 ycf3 photosystem I as 97.9 0.00012 2.5E-09 60.8 9.7 68 145-212 48-121 (168)
111 KOG0550|consensus 97.9 0.00018 3.9E-09 67.8 11.8 199 42-241 168-425 (486)
112 PRK02603 photosystem I assembl 97.9 0.00042 9.1E-09 57.8 13.0 73 144-216 47-125 (172)
113 PF14559 TPR_19: Tetratricopep 97.8 8.7E-05 1.9E-09 51.8 6.7 66 106-173 1-66 (68)
114 COG4783 Putative Zn-dependent 97.8 0.00091 2E-08 64.2 15.2 107 90-198 334-442 (484)
115 PRK10803 tol-pal system protei 97.8 0.00014 3.1E-09 65.4 9.4 73 145-217 156-237 (263)
116 KOG3785|consensus 97.8 0.00032 7E-09 65.3 11.7 201 12-217 61-305 (557)
117 PF13424 TPR_12: Tetratricopep 97.8 9.8E-06 2.1E-10 58.5 1.5 54 162-215 1-64 (78)
118 PRK14720 transcript cleavage f 97.8 0.0013 2.7E-08 68.3 17.1 131 90-229 110-283 (906)
119 KOG3060|consensus 97.8 0.00092 2E-08 59.6 13.7 123 90-214 80-205 (289)
120 PF12569 NARP1: NMDA receptor- 97.8 0.0045 9.7E-08 60.9 20.0 51 12-63 8-58 (517)
121 PF13512 TPR_18: Tetratricopep 97.7 0.00053 1.2E-08 56.1 11.3 102 94-197 8-130 (142)
122 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00043 9.2E-09 65.8 12.3 96 93-190 197-292 (395)
123 KOG4162|consensus 97.7 0.0016 3.6E-08 65.3 16.5 205 35-243 474-780 (799)
124 KOG2796|consensus 97.7 0.0018 3.8E-08 58.3 14.8 115 93-209 209-335 (366)
125 PF13371 TPR_9: Tetratricopept 97.7 0.00022 4.8E-09 50.4 7.6 54 144-197 7-60 (73)
126 KOG1173|consensus 97.7 0.00015 3.3E-09 70.4 8.7 149 90-243 306-515 (611)
127 COG3071 HemY Uncharacterized e 97.7 0.0047 1E-07 58.0 17.6 230 18-250 94-361 (400)
128 PRK11906 transcriptional regul 97.6 0.002 4.4E-08 61.8 15.4 158 73-238 277-457 (458)
129 PRK10866 outer membrane biogen 97.6 0.00071 1.5E-08 60.2 11.6 105 94-198 30-156 (243)
130 COG2956 Predicted N-acetylgluc 97.6 0.0027 5.8E-08 58.5 15.4 95 99-195 183-278 (389)
131 COG4700 Uncharacterized protei 97.6 0.001 2.2E-08 57.1 11.9 119 94-216 87-212 (251)
132 COG2956 Predicted N-acetylgluc 97.6 0.0057 1.2E-07 56.4 17.4 120 97-216 142-268 (389)
133 PLN02789 farnesyltranstransfer 97.6 0.0019 4.2E-08 59.7 14.2 119 92-210 67-189 (320)
134 PF12569 NARP1: NMDA receptor- 97.6 0.0029 6.2E-08 62.3 15.9 155 44-217 5-248 (517)
135 KOG0553|consensus 97.6 0.00033 7.1E-09 63.6 8.2 83 146-228 95-190 (304)
136 PF13371 TPR_9: Tetratricopept 97.5 0.00079 1.7E-08 47.6 8.4 66 103-170 2-67 (73)
137 KOG2003|consensus 97.5 0.005 1.1E-07 59.1 15.6 187 24-217 402-612 (840)
138 KOG2076|consensus 97.5 0.0032 6.9E-08 64.2 15.1 115 99-215 142-259 (895)
139 KOG1155|consensus 97.5 0.0055 1.2E-07 58.8 15.8 101 93-197 429-538 (559)
140 KOG0550|consensus 97.5 0.00038 8.3E-09 65.7 7.9 125 93-217 200-341 (486)
141 PLN02789 farnesyltranstransfer 97.5 0.0022 4.8E-08 59.4 12.8 119 94-217 35-162 (320)
142 KOG1174|consensus 97.5 0.0023 5E-08 60.6 12.7 197 16-217 308-524 (564)
143 KOG1128|consensus 97.4 0.00047 1E-08 68.8 8.2 165 50-217 431-607 (777)
144 PF13428 TPR_14: Tetratricopep 97.4 0.00043 9.2E-09 44.8 5.4 42 96-142 1-42 (44)
145 KOG0548|consensus 97.3 0.0032 6.9E-08 61.1 12.3 114 93-210 355-473 (539)
146 PRK10153 DNA-binding transcrip 97.3 0.0026 5.7E-08 62.6 12.1 104 92-198 372-485 (517)
147 KOG3785|consensus 97.3 0.0047 1E-07 57.7 12.8 168 23-198 37-217 (557)
148 KOG3060|consensus 97.3 0.011 2.5E-07 52.8 14.1 125 48-172 91-231 (289)
149 PF13374 TPR_10: Tetratricopep 97.3 0.00038 8.3E-09 43.6 3.6 31 165-195 1-31 (42)
150 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0016 3.5E-08 62.4 9.2 40 91-130 70-109 (453)
151 PF09613 HrpB1_HrpK: Bacterial 97.2 0.0064 1.4E-07 50.7 11.1 112 97-211 11-124 (160)
152 PF12688 TPR_5: Tetratrico pep 97.1 0.0056 1.2E-07 48.7 9.8 79 137-217 8-95 (120)
153 PF10300 DUF3808: Protein of u 97.1 0.017 3.7E-07 56.2 14.8 194 12-213 119-356 (468)
154 PF00515 TPR_1: Tetratricopept 97.0 0.00081 1.8E-08 40.6 3.2 32 167-198 2-33 (34)
155 PF13431 TPR_17: Tetratricopep 97.0 0.00085 1.8E-08 41.3 3.2 33 154-186 1-33 (34)
156 COG1729 Uncharacterized protei 97.0 0.0037 8.1E-08 56.1 8.2 72 146-217 155-235 (262)
157 KOG0495|consensus 97.0 0.071 1.5E-06 53.4 17.5 120 91-212 680-802 (913)
158 PF09613 HrpB1_HrpK: Bacterial 96.9 0.011 2.4E-07 49.3 10.4 86 127-214 6-95 (160)
159 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0013 2.7E-08 63.2 5.4 69 125-195 70-141 (453)
160 PF13428 TPR_14: Tetratricopep 96.9 0.0019 4.2E-08 41.7 4.5 38 167-204 2-42 (44)
161 PF14938 SNAP: Soluble NSF att 96.8 0.072 1.6E-06 48.1 15.8 102 93-195 111-225 (282)
162 KOG0548|consensus 96.8 0.012 2.5E-07 57.2 10.9 101 103-207 9-114 (539)
163 KOG0495|consensus 96.8 0.034 7.4E-07 55.6 13.9 118 91-214 748-868 (913)
164 PF13512 TPR_18: Tetratricopep 96.8 0.037 8E-07 45.3 12.0 95 146-240 24-129 (142)
165 COG4105 ComL DNA uptake lipopr 96.7 0.042 9.1E-07 49.1 13.1 134 93-226 68-243 (254)
166 KOG1125|consensus 96.7 0.027 5.8E-07 55.3 12.6 144 100-249 289-462 (579)
167 PF14938 SNAP: Soluble NSF att 96.7 0.029 6.3E-07 50.6 12.2 115 100-215 79-214 (282)
168 TIGR02561 HrpB1_HrpK type III 96.6 0.024 5.1E-07 46.8 10.0 84 98-183 12-95 (153)
169 KOG3081|consensus 96.6 0.098 2.1E-06 47.2 14.5 86 111-198 188-274 (299)
170 PRK04841 transcriptional regul 96.6 0.089 1.9E-06 54.5 16.5 121 96-216 612-750 (903)
171 KOG0543|consensus 96.6 0.026 5.7E-07 53.3 11.3 98 96-195 257-355 (397)
172 KOG4340|consensus 96.6 0.03 6.5E-07 51.4 11.1 94 98-195 114-207 (459)
173 PF07719 TPR_2: Tetratricopept 96.6 0.0028 6.1E-08 37.9 3.2 32 167-198 2-33 (34)
174 COG3118 Thioredoxin domain-con 96.5 0.086 1.9E-06 48.1 13.8 129 93-229 165-298 (304)
175 KOG0543|consensus 96.5 0.036 7.8E-07 52.4 11.6 106 103-208 215-336 (397)
176 COG4700 Uncharacterized protei 96.5 0.023 5.1E-07 48.9 9.4 73 144-216 101-179 (251)
177 KOG1156|consensus 96.5 0.13 2.8E-06 51.3 15.6 100 93-194 72-171 (700)
178 KOG2053|consensus 96.4 0.066 1.4E-06 55.0 13.6 114 91-207 38-154 (932)
179 PF00515 TPR_1: Tetratricopept 96.4 0.007 1.5E-07 36.4 4.1 33 97-129 2-34 (34)
180 PRK04841 transcriptional regul 96.4 0.056 1.2E-06 56.0 13.3 121 95-217 451-593 (903)
181 KOG4555|consensus 96.4 0.026 5.5E-07 46.0 8.3 72 145-216 56-134 (175)
182 KOG1128|consensus 96.4 0.024 5.2E-07 57.0 9.8 125 93-217 421-573 (777)
183 PRK11906 transcriptional regul 96.3 0.12 2.6E-06 49.9 13.9 120 98-217 257-392 (458)
184 PF07719 TPR_2: Tetratricopept 96.3 0.0099 2.2E-07 35.4 4.4 34 96-129 1-34 (34)
185 COG4235 Cytochrome c biogenesi 96.2 0.11 2.5E-06 47.2 12.7 97 119-217 145-247 (287)
186 TIGR02561 HrpB1_HrpK type III 96.2 0.051 1.1E-06 44.9 9.4 83 130-214 9-95 (153)
187 PF13176 TPR_7: Tetratricopept 96.2 0.0091 2E-07 36.9 3.9 28 168-195 1-28 (36)
188 COG2976 Uncharacterized protei 96.2 0.06 1.3E-06 46.4 10.0 93 100-195 93-188 (207)
189 KOG2471|consensus 96.1 0.0071 1.5E-07 58.5 4.7 121 95-217 205-355 (696)
190 PF10300 DUF3808: Protein of u 96.1 0.061 1.3E-06 52.3 11.3 121 90-212 261-403 (468)
191 KOG1156|consensus 96.1 0.069 1.5E-06 53.2 11.2 123 91-215 36-161 (700)
192 KOG2376|consensus 96.0 0.032 6.9E-07 55.0 8.7 119 94-217 10-130 (652)
193 PF06552 TOM20_plant: Plant sp 96.0 0.051 1.1E-06 46.3 8.7 85 148-241 7-104 (186)
194 KOG2003|consensus 95.9 1.7 3.7E-05 42.3 19.4 173 18-212 500-709 (840)
195 PF13181 TPR_8: Tetratricopept 95.7 0.018 3.9E-07 34.4 3.6 33 97-129 2-34 (34)
196 KOG1127|consensus 95.7 0.064 1.4E-06 55.8 9.4 100 93-194 593-699 (1238)
197 PF14561 TPR_20: Tetratricopep 95.6 0.16 3.4E-06 38.3 9.3 72 153-230 9-85 (90)
198 PF13174 TPR_6: Tetratricopept 95.5 0.01 2.2E-07 35.0 2.1 31 168-198 2-32 (33)
199 KOG4340|consensus 95.5 0.078 1.7E-06 48.8 8.5 59 159-217 135-198 (459)
200 PF13174 TPR_6: Tetratricopept 95.3 0.027 5.8E-07 33.1 3.5 31 98-128 2-32 (33)
201 KOG2300|consensus 95.0 1.7 3.6E-05 42.5 16.2 192 12-215 279-503 (629)
202 COG4976 Predicted methyltransf 95.0 0.061 1.3E-06 47.6 5.9 97 146-248 9-107 (287)
203 PF06552 TOM20_plant: Plant sp 94.9 0.14 2.9E-06 43.7 7.7 87 112-198 7-112 (186)
204 PF13181 TPR_8: Tetratricopept 94.8 0.024 5.3E-07 33.8 2.3 31 167-197 2-32 (34)
205 smart00028 TPR Tetratricopepti 94.7 0.04 8.7E-07 30.6 2.9 31 167-197 2-32 (34)
206 COG2976 Uncharacterized protei 94.6 0.5 1.1E-05 40.8 10.5 106 11-136 92-199 (207)
207 COG0457 NrfG FOG: TPR repeat [ 94.6 1.6 3.4E-05 34.3 13.0 113 97-211 130-250 (291)
208 PF05843 Suf: Suppressor of fo 94.6 0.56 1.2E-05 42.4 11.5 91 104-195 9-99 (280)
209 KOG4234|consensus 94.5 0.086 1.9E-06 46.0 5.7 72 146-217 109-188 (271)
210 KOG4234|consensus 94.5 0.33 7.1E-06 42.4 9.2 91 105-199 104-201 (271)
211 KOG2796|consensus 94.4 0.26 5.6E-06 44.7 8.6 117 99-217 180-306 (366)
212 KOG1070|consensus 94.3 1.1 2.4E-05 48.6 14.3 147 93-239 1455-1663(1710)
213 PF04184 ST7: ST7 protein; In 94.3 0.9 1.9E-05 44.4 12.6 145 93-243 165-351 (539)
214 KOG1127|consensus 94.3 0.14 3E-06 53.5 7.4 89 102-195 568-659 (1238)
215 COG4105 ComL DNA uptake lipopr 94.1 1.3 2.8E-05 39.7 12.4 83 91-175 29-117 (254)
216 PF09477 Type_III_YscG: Bacter 93.9 0.68 1.5E-05 36.2 8.8 77 133-213 8-85 (116)
217 KOG1308|consensus 93.9 0.047 1E-06 50.8 2.9 109 103-215 121-233 (377)
218 PF03704 BTAD: Bacterial trans 93.7 2.6 5.6E-05 33.6 12.7 98 97-194 7-124 (146)
219 KOG0545|consensus 93.3 0.59 1.3E-05 42.0 8.6 105 95-199 177-297 (329)
220 PF13374 TPR_10: Tetratricopep 92.9 0.24 5.2E-06 30.4 4.2 29 96-124 2-30 (42)
221 PF07721 TPR_4: Tetratricopept 92.7 0.16 3.5E-06 28.9 2.9 25 167-191 2-26 (26)
222 PF12862 Apc5: Anaphase-promot 92.5 0.97 2.1E-05 33.9 8.0 36 168-203 43-83 (94)
223 KOG2053|consensus 92.5 2.3 5E-05 44.1 12.7 106 105-212 18-125 (932)
224 COG0457 NrfG FOG: TPR repeat [ 92.2 4.6 9.9E-05 31.6 13.1 123 92-215 91-220 (291)
225 smart00028 TPR Tetratricopepti 92.2 0.31 6.7E-06 26.7 3.8 32 97-128 2-33 (34)
226 PF14853 Fis1_TPR_C: Fis1 C-te 92.1 0.75 1.6E-05 31.2 6.1 36 97-132 2-37 (53)
227 KOG3364|consensus 92.0 0.96 2.1E-05 36.9 7.6 70 126-195 28-100 (149)
228 KOG4648|consensus 92.0 0.54 1.2E-05 44.1 7.0 93 103-199 104-198 (536)
229 PF11207 DUF2989: Protein of u 91.8 4.7 0.0001 35.0 12.1 40 147-186 155-198 (203)
230 COG3898 Uncharacterized membra 91.5 3 6.6E-05 39.9 11.4 99 95-195 119-217 (531)
231 PF11207 DUF2989: Protein of u 91.0 7.5 0.00016 33.8 12.5 112 94-216 78-197 (203)
232 KOG1130|consensus 90.9 1.7 3.7E-05 41.8 9.2 138 99-242 20-180 (639)
233 PF12968 DUF3856: Domain of Un 90.7 0.65 1.4E-05 37.2 5.4 88 130-217 2-120 (144)
234 KOG1915|consensus 90.7 4.7 0.0001 39.5 12.0 131 104-241 445-587 (677)
235 KOG4555|consensus 90.7 5.9 0.00013 32.5 10.9 87 104-195 51-144 (175)
236 PF03704 BTAD: Bacterial trans 90.6 2.3 5E-05 33.8 8.8 63 95-159 61-123 (146)
237 KOG2471|consensus 90.2 1.6 3.5E-05 42.8 8.5 120 93-212 237-384 (696)
238 PF14853 Fis1_TPR_C: Fis1 C-te 89.6 0.33 7.2E-06 32.9 2.6 31 168-198 3-33 (53)
239 KOG2610|consensus 89.5 17 0.00038 34.3 14.4 18 21-41 47-64 (491)
240 PF13176 TPR_7: Tetratricopept 89.5 0.57 1.2E-05 28.6 3.4 27 99-125 2-28 (36)
241 PF13431 TPR_17: Tetratricopep 89.4 0.29 6.3E-06 29.8 1.9 28 189-216 2-32 (34)
242 KOG3617|consensus 89.3 14 0.0003 38.8 14.5 95 93-192 964-1106(1416)
243 KOG1586|consensus 89.0 1.8 3.9E-05 38.7 7.3 100 141-240 23-137 (288)
244 KOG1915|consensus 88.5 6.8 0.00015 38.5 11.3 117 94-213 402-523 (677)
245 KOG1586|consensus 88.4 7.4 0.00016 34.9 10.7 32 93-124 90-121 (288)
246 COG4785 NlpI Lipoprotein NlpI, 88.3 0.52 1.1E-05 41.7 3.4 100 97-198 66-165 (297)
247 PF13281 DUF4071: Domain of un 88.2 11 0.00025 35.7 12.6 119 95-214 140-276 (374)
248 PF07721 TPR_4: Tetratricopept 87.9 0.77 1.7E-05 26.0 3.0 24 97-120 2-25 (26)
249 PF04184 ST7: ST7 protein; In 87.6 5.6 0.00012 39.1 10.2 100 96-199 259-379 (539)
250 KOG2610|consensus 87.4 4.1 8.9E-05 38.3 8.9 94 98-193 177-274 (491)
251 PF10602 RPN7: 26S proteasome 87.2 17 0.00036 30.6 12.8 99 97-195 37-142 (177)
252 PF09986 DUF2225: Uncharacteri 86.7 15 0.00032 32.1 11.7 74 133-206 121-209 (214)
253 KOG4642|consensus 86.1 3.6 7.7E-05 36.9 7.4 80 110-193 24-105 (284)
254 PF12854 PPR_1: PPR repeat 85.9 1.6 3.4E-05 26.4 3.7 27 96-122 7-33 (34)
255 PF07079 DUF1347: Protein of u 85.8 19 0.00042 35.2 12.6 120 97-217 7-148 (549)
256 KOG0376|consensus 85.7 2.4 5.3E-05 41.1 6.7 101 98-202 6-111 (476)
257 COG4785 NlpI Lipoprotein NlpI, 85.7 3.2 7E-05 36.8 6.9 119 92-215 95-215 (297)
258 PF04053 Coatomer_WDAD: Coatom 85.6 12 0.00027 36.2 11.7 85 93-192 344-428 (443)
259 PF12854 PPR_1: PPR repeat 85.4 2.2 4.9E-05 25.7 4.3 28 164-191 5-32 (34)
260 KOG2047|consensus 85.2 26 0.00057 35.7 13.7 101 95-195 168-277 (835)
261 PF13041 PPR_2: PPR repeat fam 84.9 4 8.7E-05 26.4 5.7 29 167-195 4-32 (50)
262 TIGR03504 FimV_Cterm FimV C-te 84.7 3.8 8.3E-05 26.6 5.3 25 100-124 3-27 (44)
263 KOG4648|consensus 84.1 1.5 3.3E-05 41.3 4.4 73 145-217 110-185 (536)
264 COG3118 Thioredoxin domain-con 83.8 17 0.00036 33.5 10.9 46 146-191 148-193 (304)
265 TIGR03504 FimV_Cterm FimV C-te 83.5 2.3 4.9E-05 27.7 3.9 25 171-195 4-28 (44)
266 PF05843 Suf: Suppressor of fo 82.4 9.9 0.00022 34.2 9.1 76 140-215 9-88 (280)
267 KOG1550|consensus 82.2 8.6 0.00019 38.3 9.2 95 114-211 230-339 (552)
268 COG2909 MalT ATP-dependent tra 82.0 72 0.0016 33.6 17.4 118 93-211 412-551 (894)
269 KOG1585|consensus 81.8 25 0.00054 31.8 10.9 122 102-228 116-260 (308)
270 PRK10941 hypothetical protein; 81.2 19 0.00041 32.6 10.3 58 143-200 192-252 (269)
271 PF14561 TPR_20: Tetratricopep 81.2 8 0.00017 28.9 6.7 38 91-128 17-54 (90)
272 PF10345 Cohesin_load: Cohesin 80.8 28 0.00061 34.9 12.5 112 101-214 306-466 (608)
273 TIGR02508 type_III_yscG type I 80.1 9.2 0.0002 29.8 6.6 71 142-214 15-85 (115)
274 KOG2396|consensus 80.0 9.1 0.0002 37.7 8.1 72 93-169 102-177 (568)
275 PF13281 DUF4071: Domain of un 79.9 32 0.0007 32.7 11.7 78 128-209 141-229 (374)
276 KOG1070|consensus 79.0 80 0.0017 35.2 15.2 116 91-208 1559-1681(1710)
277 PF12921 ATP13: Mitochondrial 78.9 26 0.00057 27.8 9.4 96 96-213 2-104 (126)
278 KOG1464|consensus 78.1 57 0.0012 30.1 13.9 183 13-195 26-260 (440)
279 PF04910 Tcf25: Transcriptiona 77.8 41 0.00088 31.7 11.8 113 93-207 100-234 (360)
280 PF01535 PPR: PPR repeat; Int 76.8 4.1 8.9E-05 22.9 3.2 26 100-125 4-29 (31)
281 KOG4507|consensus 76.3 25 0.00054 35.6 10.0 88 109-200 620-713 (886)
282 PF10579 Rapsyn_N: Rapsyn N-te 76.3 7.1 0.00015 28.8 4.9 51 144-194 18-71 (80)
283 cd00280 TRFH Telomeric Repeat 76.0 51 0.0011 28.4 10.8 87 148-240 85-183 (200)
284 PF08311 Mad3_BUB1_I: Mad3/BUB 75.6 19 0.00041 28.5 7.7 55 136-193 70-126 (126)
285 KOG1550|consensus 75.3 48 0.001 33.0 12.1 113 93-209 241-372 (552)
286 PF07079 DUF1347: Protein of u 75.3 29 0.00063 34.0 10.0 81 130-213 462-546 (549)
287 KOG0551|consensus 75.2 19 0.00041 33.9 8.4 67 146-212 95-168 (390)
288 PF13041 PPR_2: PPR repeat fam 74.5 7.4 0.00016 25.1 4.3 27 99-125 6-32 (50)
289 KOG1585|consensus 74.4 52 0.0011 29.8 10.7 119 97-215 32-168 (308)
290 KOG1941|consensus 74.4 33 0.00072 32.8 9.9 83 130-216 124-225 (518)
291 KOG1920|consensus 74.3 64 0.0014 35.1 12.9 146 20-192 892-1052(1265)
292 PF07720 TPR_3: Tetratricopept 74.0 7.3 0.00016 24.1 3.9 23 168-190 3-25 (36)
293 PF12862 Apc5: Anaphase-promot 73.7 28 0.0006 25.8 7.8 70 103-174 5-86 (94)
294 KOG4642|consensus 73.5 10 0.00022 34.1 6.0 72 146-217 24-98 (284)
295 KOG0376|consensus 73.2 1.8 3.9E-05 42.0 1.4 93 146-238 18-129 (476)
296 PF13812 PPR_3: Pentatricopept 72.8 7.8 0.00017 22.3 3.8 27 99-125 4-30 (34)
297 PF15015 NYD-SP12_N: Spermatog 72.7 37 0.00081 33.0 9.9 105 42-156 175-286 (569)
298 KOG2041|consensus 72.3 45 0.00098 34.5 10.8 85 104-190 755-876 (1189)
299 COG0790 FOG: TPR repeat, SEL1 72.0 71 0.0015 28.3 16.6 118 93-213 106-238 (292)
300 PRK13184 pknD serine/threonine 72.0 15 0.00033 39.0 7.9 91 107-198 486-587 (932)
301 TIGR00756 PPR pentatricopeptid 70.5 5.5 0.00012 22.8 2.7 25 170-194 4-28 (35)
302 PRK10941 hypothetical protein; 70.1 37 0.00079 30.7 9.1 67 101-169 186-252 (269)
303 TIGR00756 PPR pentatricopeptid 69.9 10 0.00022 21.6 3.8 25 101-125 5-29 (35)
304 PF08631 SPO22: Meiosis protei 69.0 86 0.0019 28.0 11.5 93 101-195 40-150 (278)
305 PF09205 DUF1955: Domain of un 68.6 28 0.0006 28.6 7.1 51 145-195 99-149 (161)
306 PF07720 TPR_3: Tetratricopept 67.9 16 0.00034 22.6 4.4 32 96-127 1-34 (36)
307 KOG0551|consensus 67.4 30 0.00065 32.6 7.9 88 105-195 90-182 (390)
308 KOG2422|consensus 67.3 1.1E+02 0.0024 30.9 12.1 175 25-203 240-456 (665)
309 KOG0985|consensus 67.1 75 0.0016 34.4 11.4 118 93-212 981-1148(1666)
310 PF10373 EST1_DNA_bind: Est1 D 65.5 37 0.0008 29.6 8.1 59 151-209 1-62 (278)
311 KOG2300|consensus 65.3 66 0.0014 31.9 10.1 116 102-217 329-465 (629)
312 KOG1258|consensus 63.9 1.7E+02 0.0036 29.5 16.3 119 93-213 363-491 (577)
313 KOG2047|consensus 63.9 1.8E+02 0.0038 30.0 12.9 118 97-215 388-529 (835)
314 KOG3824|consensus 62.8 38 0.00083 31.7 7.6 50 146-195 130-179 (472)
315 KOG1941|consensus 62.7 1.2E+02 0.0025 29.2 10.9 118 98-215 124-264 (518)
316 PF11817 Foie-gras_1: Foie gra 62.5 22 0.00047 31.4 6.1 48 168-215 180-236 (247)
317 PF12968 DUF3856: Domain of Un 61.9 84 0.0018 25.4 11.5 92 103-194 16-128 (144)
318 PF10602 RPN7: 26S proteasome 61.4 73 0.0016 26.7 8.8 50 146-195 50-102 (177)
319 KOG3807|consensus 60.4 62 0.0013 30.7 8.6 20 144-163 287-306 (556)
320 PF09986 DUF2225: Uncharacteri 59.2 18 0.00039 31.5 4.8 53 165-217 117-185 (214)
321 COG0790 FOG: TPR repeat, SEL1 59.0 1.3E+02 0.0028 26.6 10.9 15 181-195 128-142 (292)
322 PF04910 Tcf25: Transcriptiona 56.0 36 0.00079 32.0 6.6 37 158-194 32-68 (360)
323 PF12753 Nro1: Nuclear pore co 55.7 47 0.001 31.8 7.2 59 112-170 334-401 (404)
324 PF10516 SHNi-TPR: SHNi-TPR; 54.9 23 0.00049 22.2 3.4 29 97-125 2-30 (38)
325 PF04781 DUF627: Protein of un 54.8 1E+02 0.0022 24.2 7.8 34 146-179 10-46 (111)
326 KOG1130|consensus 54.5 1.1E+02 0.0023 30.0 9.3 114 99-213 238-371 (639)
327 COG3629 DnrI DNA-binding trans 54.0 77 0.0017 28.9 8.1 63 129-195 154-216 (280)
328 KOG1914|consensus 53.8 1.4E+02 0.0031 30.0 10.2 89 120-213 10-103 (656)
329 COG3898 Uncharacterized membra 53.2 1.9E+02 0.0042 28.1 10.7 113 102-217 90-208 (531)
330 COG2909 MalT ATP-dependent tra 51.2 1.2E+02 0.0027 31.9 9.8 111 103-216 367-516 (894)
331 PF10516 SHNi-TPR: SHNi-TPR; 50.5 27 0.00058 21.9 3.3 28 168-195 3-30 (38)
332 PF07219 HemY_N: HemY protein 50.2 62 0.0013 24.7 6.0 40 100-139 63-102 (108)
333 TIGR02498 type_III_ssaH type I 50.1 82 0.0018 23.2 6.1 56 136-191 9-65 (79)
334 PF02259 FAT: FAT domain; Int 49.6 1.9E+02 0.0042 25.8 14.3 49 13-65 3-51 (352)
335 cd02681 MIT_calpain7_1 MIT: do 49.1 27 0.00059 25.4 3.6 28 167-194 7-34 (76)
336 PF08631 SPO22: Meiosis protei 48.8 2E+02 0.0043 25.7 17.0 122 90-213 115-255 (278)
337 KOG1308|consensus 48.3 4 8.7E-05 38.3 -1.1 73 144-216 126-201 (377)
338 PRK15180 Vi polysaccharide bio 47.3 68 0.0015 31.9 6.9 50 146-195 371-420 (831)
339 PF10938 YfdX: YfdX protein; 47.1 1.3E+02 0.0029 24.7 7.9 91 101-194 7-145 (155)
340 PF04053 Coatomer_WDAD: Coatom 47.1 70 0.0015 31.1 7.2 136 42-195 260-402 (443)
341 KOG1538|consensus 47.1 3.5E+02 0.0077 28.1 16.8 140 93-243 744-908 (1081)
342 cd02683 MIT_1 MIT: domain cont 46.8 29 0.00063 25.2 3.5 28 168-195 8-35 (77)
343 KOG2396|consensus 46.8 1.1E+02 0.0024 30.4 8.3 66 133-198 106-172 (568)
344 KOG3617|consensus 46.6 1.1E+02 0.0023 32.6 8.4 34 146-187 814-847 (1416)
345 KOG3616|consensus 44.4 36 0.00078 35.5 4.8 100 93-200 992-1111(1636)
346 PF11846 DUF3366: Domain of un 44.3 84 0.0018 26.3 6.5 49 148-197 127-175 (193)
347 PF10579 Rapsyn_N: Rapsyn N-te 44.1 45 0.00098 24.6 4.1 47 18-64 16-64 (80)
348 PF10255 Paf67: RNA polymerase 43.7 42 0.00092 32.2 5.0 67 100-194 126-192 (404)
349 cd02682 MIT_AAA_Arch MIT: doma 43.6 39 0.00085 24.5 3.7 29 167-195 7-35 (75)
350 PF04212 MIT: MIT (microtubule 43.2 42 0.00091 23.3 3.8 28 168-195 7-34 (69)
351 COG3914 Spy Predicted O-linked 42.9 3.8E+02 0.0081 27.2 12.9 119 93-215 62-194 (620)
352 KOG4507|consensus 42.3 1.2E+02 0.0027 30.8 7.9 78 98-177 644-721 (886)
353 PF08424 NRDE-2: NRDE-2, neces 42.0 2.8E+02 0.006 25.4 12.0 103 91-195 60-183 (321)
354 smart00386 HAT HAT (Half-A-TPR 41.9 60 0.0013 17.8 3.9 25 147-171 2-26 (33)
355 COG4455 ImpE Protein of avirul 41.5 1.1E+02 0.0024 27.4 6.7 83 146-228 15-111 (273)
356 cd02680 MIT_calpain7_2 MIT: do 41.0 34 0.00074 24.8 3.0 28 168-195 8-35 (75)
357 KOG1538|consensus 40.9 1.8E+02 0.0038 30.2 8.8 122 105-235 594-744 (1081)
358 KOG1839|consensus 40.5 59 0.0013 35.6 5.8 82 145-226 945-1059(1236)
359 PF10345 Cohesin_load: Cohesin 40.4 1.4E+02 0.0031 29.9 8.5 101 95-195 403-523 (608)
360 PRK15180 Vi polysaccharide bio 40.1 2.1E+02 0.0047 28.6 9.1 104 95-200 288-394 (831)
361 PRK12798 chemotaxis protein; R 39.6 3.6E+02 0.0079 26.1 11.3 102 93-195 109-214 (421)
362 KOG3616|consensus 39.5 68 0.0015 33.6 5.8 44 146-190 805-848 (1636)
363 KOG3364|consensus 39.0 36 0.00078 28.0 3.1 37 94-130 69-105 (149)
364 cd02684 MIT_2 MIT: domain cont 38.9 46 0.00099 23.9 3.5 28 168-195 8-35 (75)
365 PRK13184 pknD serine/threonine 38.6 43 0.00094 35.7 4.5 83 146-228 489-593 (932)
366 KOG2041|consensus 38.1 1.1E+02 0.0025 31.8 7.1 140 60-214 680-839 (1189)
367 PF11817 Foie-gras_1: Foie gra 37.9 2.6E+02 0.0056 24.5 8.9 76 112-194 161-246 (247)
368 KOG0292|consensus 37.6 1.5E+02 0.0033 31.6 7.9 78 46-126 596-702 (1202)
369 smart00777 Mad3_BUB1_I Mad3/BU 37.4 1.9E+02 0.0042 23.0 7.2 52 137-191 71-124 (125)
370 KOG4521|consensus 36.9 2.3E+02 0.005 31.2 9.3 116 95-214 919-1071(1480)
371 PF12753 Nro1: Nuclear pore co 36.9 82 0.0018 30.2 5.7 22 182-203 378-403 (404)
372 KOG1464|consensus 35.7 1E+02 0.0022 28.5 5.8 49 146-194 41-93 (440)
373 KOG1839|consensus 35.4 1.3E+02 0.0029 33.0 7.5 104 92-195 969-1086(1236)
374 cd02678 MIT_VPS4 MIT: domain c 34.8 62 0.0013 23.0 3.6 28 168-195 8-35 (75)
375 smart00745 MIT Microtubule Int 34.3 64 0.0014 22.7 3.7 27 169-195 11-37 (77)
376 KOG1914|consensus 33.9 4.3E+02 0.0093 26.8 10.1 88 110-198 380-469 (656)
377 PF02259 FAT: FAT domain; Int 33.8 3.5E+02 0.0075 24.2 13.4 66 93-160 143-212 (352)
378 KOG1061|consensus 33.3 1.9E+02 0.004 30.1 7.8 71 129-200 437-516 (734)
379 KOG0276|consensus 33.3 5.6E+02 0.012 26.4 11.7 140 42-191 585-746 (794)
380 COG4649 Uncharacterized protei 33.2 3.2E+02 0.007 23.6 12.5 113 101-215 63-185 (221)
381 KOG4814|consensus 32.9 5.8E+02 0.013 26.5 13.5 135 103-241 361-548 (872)
382 PF09477 Type_III_YscG: Bacter 32.7 2.5E+02 0.0054 22.2 11.2 93 99-199 9-103 (116)
383 PF08424 NRDE-2: NRDE-2, neces 31.7 4.1E+02 0.0088 24.3 15.3 131 113-247 48-217 (321)
384 PF10414 CysG_dimeriser: Siroh 31.4 71 0.0015 21.6 3.3 27 168-194 34-60 (60)
385 KOG1811|consensus 30.9 4.9E+02 0.011 26.9 10.0 97 104-204 525-629 (1141)
386 KOG4814|consensus 30.9 2.4E+02 0.0052 29.1 8.0 55 103-159 401-455 (872)
387 COG2912 Uncharacterized conser 30.5 3.9E+02 0.0085 24.3 8.7 101 93-195 144-244 (269)
388 PF07219 HemY_N: HemY protein 30.1 2E+02 0.0044 21.8 6.1 25 171-195 64-88 (108)
389 PF05470 eIF-3c_N: Eukaryotic 30.1 1.4E+02 0.0031 30.2 6.4 32 170-201 504-537 (595)
390 KOG0687|consensus 29.7 4.7E+02 0.01 24.8 9.2 101 94-195 102-210 (393)
391 PF04190 DUF410: Protein of un 28.8 4.2E+02 0.009 23.6 10.1 49 165-215 89-139 (260)
392 cd02656 MIT MIT: domain contai 27.9 96 0.0021 21.8 3.7 27 169-195 9-35 (75)
393 PF14689 SPOB_a: Sensor_kinase 27.9 86 0.0019 21.5 3.3 25 100-124 27-51 (62)
394 COG4649 Uncharacterized protei 27.2 4.1E+02 0.009 23.0 8.3 60 146-205 72-135 (221)
395 COG3629 DnrI DNA-binding trans 26.5 3.9E+02 0.0084 24.4 8.1 59 99-161 156-216 (280)
396 KOG0985|consensus 26.5 4.2E+02 0.0091 29.1 9.1 92 126-226 1102-1200(1666)
397 TIGR02508 type_III_yscG type I 26.5 3.2E+02 0.0069 21.4 8.8 87 105-199 14-102 (115)
398 COG4976 Predicted methyltransf 26.0 69 0.0015 28.8 3.0 38 93-130 26-63 (287)
399 COG1447 CelC Phosphotransferas 25.2 1.4E+02 0.003 23.3 4.2 30 166-195 19-48 (105)
400 KOG4422|consensus 24.9 6.9E+02 0.015 24.8 10.1 35 161-195 517-551 (625)
401 PF15015 NYD-SP12_N: Spermatog 24.8 6.8E+02 0.015 24.7 10.5 112 94-209 174-311 (569)
402 COG5107 RNA14 Pre-mRNA 3'-end 24.6 7.1E+02 0.015 24.8 13.3 105 90-195 380-495 (660)
403 cd00215 PTS_IIA_lac PTS_IIA, P 24.5 1.3E+02 0.0029 22.8 4.0 29 167-195 16-44 (97)
404 TIGR00823 EIIA-LAC phosphotran 24.3 1.3E+02 0.0029 22.9 4.0 29 167-195 18-46 (99)
405 COG3914 Spy Predicted O-linked 23.1 8.1E+02 0.018 25.0 10.3 96 112-208 47-147 (620)
406 COG2178 Predicted RNA-binding 23.0 4.3E+02 0.0093 23.0 7.2 24 171-194 34-57 (204)
407 KOG3824|consensus 22.9 3.7E+02 0.008 25.4 7.2 75 93-169 111-187 (472)
408 KOG2581|consensus 22.7 3.9E+02 0.0084 26.1 7.5 84 98-184 211-305 (493)
409 PRK09591 celC cellobiose phosp 22.5 1.5E+02 0.0032 22.9 4.0 29 167-195 21-49 (104)
410 PF04762 IKI3: IKI3 family; I 22.3 2.9E+02 0.0062 29.6 7.3 77 111-192 844-927 (928)
411 PRK12798 chemotaxis protein; R 22.1 6.5E+02 0.014 24.4 8.9 117 106-227 91-225 (421)
412 cd02677 MIT_SNX15 MIT: domain 21.9 1.5E+02 0.0033 21.3 3.7 28 168-195 8-35 (75)
413 PF14858 DUF4486: Domain of un 21.9 1.3E+02 0.0028 30.1 4.3 92 163-254 194-326 (542)
414 PF04049 APC8: Anaphase promot 21.9 59 0.0013 26.4 1.7 43 45-87 76-121 (142)
415 PF09205 DUF1955: Domain of un 21.9 4.6E+02 0.01 21.7 7.2 63 95-161 85-149 (161)
416 PF09797 NatB_MDM20: N-acetylt 21.6 6.5E+02 0.014 23.3 9.5 66 146-212 197-265 (365)
417 PRK10454 PTS system N,N'-diace 21.1 1.6E+02 0.0035 23.1 4.0 30 166-195 31-60 (115)
418 KOG3807|consensus 20.6 7.6E+02 0.016 23.7 11.6 92 99-195 187-304 (556)
419 KOG4422|consensus 20.6 8.4E+02 0.018 24.2 9.9 97 92-194 203-301 (625)
420 COG5600 Transcription-associat 20.2 3.8E+02 0.0082 25.8 6.8 65 98-164 179-252 (413)
No 1
>KOG3081|consensus
Probab=100.00 E-value=1.7e-61 Score=423.12 Aligned_cols=241 Identities=41% Similarity=0.648 Sum_probs=223.7
Q ss_pred CCCCccCCcchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---CChHHHHHHHH
Q psy3174 1 MSSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---LPEELSCIKVL 77 (265)
Q Consensus 1 ~~~~~~~~~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---~~~~l~~~~~~ 77 (265)
|++-+-+..|+||+|||+||+|||++||+++++...++ ...++++|+||+|||+|++..++++| +.|++++++.+
T Consensus 1 m~~~~~g~~d~LF~iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~ 78 (299)
T KOG3081|consen 1 MSSMEAGPEDELFNIRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLL 78 (299)
T ss_pred CCccccCcchhHHHHHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHH
Confidence 56655566699999999999999999999987766554 56789999999999999999999999 78889999999
Q ss_pred HHHhcCCCcCcc-------------------------------cc---------cCCCHHHHHHHHHHHHHcCChHHHHH
Q psy3174 78 AEYLSIPSKNGS-------------------------------SN---------FGTHLEINALKIHTYLTMYRNDLALK 117 (265)
Q Consensus 78 A~~l~~~~~~e~-------------------------------~~---------~~~~lE~~al~v~~~l~~~r~d~Aek 117 (265)
|.|+..+++++. ++ ..+++|+.++.|+|+++|+|+|.|++
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887543 11 18999999999999999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--
Q psy3174 118 ELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 118 ~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-- 195 (265)
.+++|++|++|+|++|||++||++++|++++++|||+|+|+.+++|.|+.++||+|+|+|++|||+||+.+++++|++
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CHHHHHHHHHHHHHcCCCCccC-----------CCChhhhcHHHHHHHHHHHHhhcccc
Q psy3174 196 -SEDTLINNMVTAGRLGKGNEMS-----------VSPPFLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 196 -~pdtl~nl~~~~~~~Gk~~ea~-----------p~hp~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
+|+||+|++|++.++||++++. |.|||+++++++++.|||++.+|.++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDrl~~qy~~s 298 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDRLVLQYDTS 298 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999996643 99999999999999999999999875
No 2
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=100.00 E-value=7.6e-58 Score=415.15 Aligned_cols=232 Identities=45% Similarity=0.668 Sum_probs=209.1
Q ss_pred cchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---CChHHHHHHHHHHHhcCCC
Q psy3174 9 VDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---LPEELSCIKVLAEYLSIPS 85 (265)
Q Consensus 9 ~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---~~~~l~~~~~~A~~l~~~~ 85 (265)
+||||+|||+||+|||++||++++ +.+.+++..+++++|+|||||++|+++.+++++ ++|.+++++++|+|+..+.
T Consensus 2 ~deLf~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 2 SDELFTVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp --TTHHHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTST
T ss_pred chHHHHHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCcc
Confidence 689999999999999999999986 777888899999999999999999999999999 7888999999999999865
Q ss_pred cCcc-------------------------------cc---------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 86 KNGS-------------------------------SN---------FGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 86 ~~e~-------------------------------~~---------~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.++. ++ -.+++|+++++||||++|||+|+|+|++++|.+|
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5432 10 1589999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
++|++++|||+|||+++.|++++++|+|+|+|+.+++|+|+.++|++|+|+|++|+|+||++++.++++. +||+|+|
T Consensus 161 ~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 161 DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHcCCCCccC-----------CCChhhhcHHHHHHHHHHHHhhcc
Q psy3174 203 NMVTAGRLGKGNEMS-----------VSPPFLFRSDETTATLDACGLQSN 241 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~-----------p~hp~~~~~~~~~~~FD~~~~~~~ 241 (265)
+|+|+.++||+.++. |+|||++++.++++.||+++.||+
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~~ky~ 290 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAVAKYA 290 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHhcC
Confidence 999999999995432 999999999999999999999995
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.47 E-value=5.8e-12 Score=125.90 Aligned_cols=215 Identities=17% Similarity=0.150 Sum_probs=170.8
Q ss_pred CcchhH-HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHH
Q psy3174 8 EVDELF-DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEY 80 (265)
Q Consensus 8 ~~delf-~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~ 80 (265)
.+++++ ..+..+-.|+|..|+..+++.....|+. .+...++.++|+.+|+++.++..+ .++.......++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 99 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPND-AEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARA 99 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHH
Confidence 555555 5588889999999999986665556553 345677889999999999777665 33334444455555
Q ss_pred hcCCCcCcc----------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHH
Q psy3174 81 LSIPSKNGS----------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNE 150 (265)
Q Consensus 81 l~~~~~~e~----------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~e 150 (265)
+...+..+. ...+...+....++.++...|+++.|.+.|+++++.+|++.-..+..+++.+.. |++++
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--~~~~~ 177 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAE--NRFDE 177 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHC--CCHHH
Confidence 444443221 123567888999999999999999999999999999999887777777776655 78999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------
Q psy3174 151 AFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS---------- 217 (265)
Q Consensus 151 A~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~---------- 217 (265)
|..+++++....|.++..+..+|.++..+|++++|...++++++. +++++.+++.++...|+..++.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 257 (899)
T TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA 257 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999899999999999999999999999999988 6778899999999999987754
Q ss_pred CCChhhhc
Q psy3174 218 VSPPFLFR 225 (265)
Q Consensus 218 p~hp~~~~ 225 (265)
|++|.+..
T Consensus 258 ~~~~~~~~ 265 (899)
T TIGR02917 258 PNSPLAHY 265 (899)
T ss_pred CCCchHHH
Confidence 77776543
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.37 E-value=4.3e-11 Score=119.68 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++.+....++.+|..+|+++.|.+.|+++++..|+++.+....+|+.... ++ .+|..+++++....|+++.++..+
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~-~~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL--KD-PRALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--Cc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence 444555555555555555555555555555555555544444444443332 22 345555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
|.++..+|++++|..+++++++. +|++..+++.++...|+..
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence 55555555555555555555544 4445555555555555443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.35 E-value=8.2e-11 Score=116.95 Aligned_cols=148 Identities=11% Similarity=-0.003 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+........++.++..+|+++.|.+.|+++++.+|+..-..+..+++.+.. |++++|...|+++.+..|..+.+++.+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL--GDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455667888899999999999999999999999999887766677766555 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCccC----------CCChhhhcH----HHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSE---DTLINNMVTAGRLGKGNEMS----------VSPPFLFRS----DETTATLDA 235 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~p---dtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~----~~~~~~FD~ 235 (265)
|.++..+|++++|...++++++.+| ..+.+++.++..+|+..++. |++|.+... ......|++
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 9999999999999999999999944 47789999999999987765 888865543 223445666
Q ss_pred HHhhccc
Q psy3174 236 CGLQSNS 242 (265)
Q Consensus 236 ~~~~~~~ 242 (265)
....|..
T Consensus 486 A~~~~~~ 492 (615)
T TIGR00990 486 AIEKFDT 492 (615)
T ss_pred HHHHHHH
Confidence 6665553
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.34 E-value=8.8e-11 Score=116.75 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=133.5
Q ss_pred hccHHHHHHHHhhcccCC--hhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH-HHHHHHHHHHhcCCCcCcc---
Q psy3174 21 LGNYQQCIKEGQRLKATD--PKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCIKVLAEYLSIPSKNGS--- 89 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~~--~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~~~~A~~l~~~~~~e~--- 89 (265)
.|.|.+|+..+++..... .........+...+|..+|+++.++..+ ..|. ..++..++..+...++.+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 368999988875543322 1222334455577888999998777666 2333 4455555555444433322
Q ss_pred ------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 90 ------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 90 ------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
...|++.++.+.++.++..+|++++|.+.|+++++++|++.......+.+.... |++++|...|+++...+|
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~--g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE--GSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCC
Confidence 335889999999999999999999999999999999999886655555554444 789999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.++.+++.+|.++..+|++++|...++++++.+|
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999998844
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.34 E-value=1.8e-10 Score=107.00 Aligned_cols=211 Identities=12% Similarity=0.052 Sum_probs=154.4
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc----CChH------HHHHHHHHHHh
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK----LPEE------LSCIKVLAEYL 81 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei----~~~~------l~~~~~~A~~l 81 (265)
++........|+|.+|+..++++...+|++. +....+.+.+..+|+++.++.-+ ..|. ......++..+
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETV-ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4667778888999999999877766666542 33445577889999998665543 2211 12333445444
Q ss_pred cCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHH
Q psy3174 82 SIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLN 149 (265)
Q Consensus 82 ~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~ 149 (265)
...++.+. ...+.+......++.++...|+++.|.+.++++.+.++++.-..++..|..++ ...++++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 43333221 22467788888999999999999999999999998877654333333333333 3458899
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH----HHHHHHHHHHHcCCCCccC--------
Q psy3174 150 EAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED----TLINNMVTAGRLGKGNEMS-------- 217 (265)
Q Consensus 150 eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd----tl~nl~~~~~~~Gk~~ea~-------- 217 (265)
+|...|+++....|.+...+..+|.++.++|++++|..++.++++.+|+ ++..++.++..+|+.+++.
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988888889999999999999999999999987443 5678888999999987754
Q ss_pred --CCChhh
Q psy3174 218 --VSPPFL 223 (265)
Q Consensus 218 --p~hp~~ 223 (265)
|+++..
T Consensus 278 ~~p~~~~~ 285 (389)
T PRK11788 278 EYPGADLL 285 (389)
T ss_pred hCCCchHH
Confidence 776654
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.31 E-value=1.9e-10 Score=115.52 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=58.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHH----HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNE----AFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~e----A~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+.++...||+++|...++++++.+|++.......+.+.... |++++ |...|+++....|+++..+..+|.++..
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~--G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS--GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555543333333332222 33443 5555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 179 QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+|++++|...++++++. +|++..+++.++..+|+.+++
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555555554 444555555555555555443
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.29 E-value=6.4e-10 Score=111.75 Aligned_cols=220 Identities=15% Similarity=0.009 Sum_probs=157.8
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChH-HHHHHHHHHHhcCCCcCc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEE-LSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~-l~~~~~~A~~l~~~~~~e 88 (265)
+-..-.|++++++..+.++....|+... ... ....++.+|+++.++... .++. .......+..+...++.+
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~-~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEVPPRGD-MIA-TCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhCCCCHH-HHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHH
Confidence 4566789999999887555443433211 111 124578889988665433 1111 112222233333333322
Q ss_pred c---------cccCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHH
Q psy3174 89 S---------SNFGTHLEINALKIHTYLTMYRNDL----ALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 89 ~---------~~~~~~lE~~al~v~~~l~~~r~d~----Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
. ...|+++.....++.+|..+|++++ |...++++++.+|+++-+....+++.... |++++|...+
T Consensus 230 eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~--g~~~eA~~~l 307 (656)
T PRK15174 230 EAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT--GQNEKAIPLL 307 (656)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 1 3458899999999999999999996 89999999999999987777777776655 7899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 156 ~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
+++....|+++.+...+|.++.++|++++|...++++++.+|+ ....++.++..+|+.+++. |+|+
T Consensus 308 ~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~- 386 (656)
T PRK15174 308 QQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL- 386 (656)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-
Confidence 9999999999999999999999999999999999999988655 3455688889999988765 7764
Q ss_pred hhcHHHHHHHHHHHHhhc
Q psy3174 223 LFRSDETTATLDACGLQS 240 (265)
Q Consensus 223 ~~~~~~~~~~FD~~~~~~ 240 (265)
-..+.+.-..+|++.+..
T Consensus 387 ~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 387 PQSFEEGLLALDGQISAV 404 (656)
T ss_pred hhhHHHHHHHHHHHHHhc
Confidence 344444444555544443
No 10
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.29 E-value=8.2e-12 Score=112.04 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+...+...+.++.+.|+++.|.+.|+++++.+|++.-.....+|+.+.. |++.++..+++.+....|.++.++..+
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~--~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM--GDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--CChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 678899999999999999999999999999999999998888888886545 678888889988888888888888999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|.+++.+|++++|..++++++.. ||.++.+++-++...|+.+++.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred HHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999985 8889999999999999988754
No 11
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=2.1e-10 Score=108.83 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=141.1
Q ss_pred HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---------CChHHHHHHHHH--HHhc
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---------LPEELSCIKVLA--EYLS 82 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---------~~~~l~~~~~~A--~~l~ 82 (265)
..+-+...|+|.+|+..++.+....|+.. ....+..+.|+.+|+++.++..+ +++....++..+ ..+.
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHK-EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 35666777888888887766666555543 23445567788888877544433 111121111111 1111
Q ss_pred ----CCCcCcc----c----ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccH
Q psy3174 83 ----IPSKNGS----S----NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKL 148 (265)
Q Consensus 83 ----~~~~~e~----~----~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~ 148 (265)
..+...- . ..+++++..+..+..+...|+++.|.+.+.+.++..||+.-.. +...+..+ ..++.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l--~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL--KPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc--CCCCh
Confidence 1110000 1 2347999999999999999999999999999999888886321 11222222 23678
Q ss_pred HHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCcc
Q psy3174 149 NEAFYTLQDLIDKYGSTP--MLVNAQVAVLIAQDKYEEAWDLLQ--DTAGD--SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 149 ~eA~~~~~el~~~~p~t~--~lLn~~A~~~~~~g~~eEAe~~l~--~al~~--~pdtl~nl~~~~~~~Gk~~ea 216 (265)
..+...++.....+|+++ .++..+|++++++|+|++|.+.++ .+++. ++++..+++.+++.+|+.+++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999 899999999999999999999999 57666 666788999999999998664
No 12
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=5.2e-11 Score=103.66 Aligned_cols=148 Identities=18% Similarity=0.083 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
.-...+.-++.-|+..|++..|++.++++++.||.+..+.+++|.+.-.. |..+.|...|++....+|.+..+||+-|
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~--Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKL--GENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--CChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 34567777888999999999999999999999999999999999987766 6699999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCccC----------CCChhhhc-----------HH
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFR-----------SD 227 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~-----------~~ 227 (265)
+-++.||+++||...+.+|++. .++++.|++.|+..+|++..+. |+.|...- +.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 9999999999999999999997 7889999999999999987543 66665432 22
Q ss_pred HHHHHHHHHHhhcccc
Q psy3174 228 ETTATLDACGLQSNSE 243 (265)
Q Consensus 228 ~~~~~FD~~~~~~~~~ 243 (265)
....-||++..+.-+.
T Consensus 191 ~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 191 PARLYLERYQQRGGAQ 206 (250)
T ss_pred HHHHHHHHHHhccccc
Confidence 3445566666665433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=6.3e-10 Score=115.91 Aligned_cols=229 Identities=8% Similarity=-0.019 Sum_probs=164.0
Q ss_pred CcchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhc
Q psy3174 8 EVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLS 82 (265)
Q Consensus 8 ~~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~ 82 (265)
++.-++..-+.+..|.+.+++..+.+.....|+.. ......+++...|+++.++... .+|.......++..+.
T Consensus 476 ~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~--~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 476 DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAW--QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred CHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchH--HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 34446666677777888888885534334445432 1344456667899998665544 2222222233344333
Q ss_pred CCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHH
Q psy3174 83 IPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFY 153 (265)
Q Consensus 83 ~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~ 153 (265)
..++.+. ...|+.....+.+...+..+||+++|...|+++++.+|+ .-.....+.+.. ..|++++|..
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~--~lG~~deA~~ 630 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR--QRHNVPAAVS 630 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH--HCCCHHHHHH
Confidence 3333221 223666666666566666779999999999999999996 544444444433 3488999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCC
Q psy3174 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSP 220 (265)
Q Consensus 154 ~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~h 220 (265)
.|+++....|+++..++.+|.++..+|++++|...++++++. +|+++.|++.++..+|+.+++. |+.
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999998 7789999999999999987754 777
Q ss_pred hhhhc----HHHHHHHHHHHHhhcc
Q psy3174 221 PFLFR----SDETTATLDACGLQSN 241 (265)
Q Consensus 221 p~~~~----~~~~~~~FD~~~~~~~ 241 (265)
.-+.. +.+....|+++-+.|.
T Consensus 711 a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 711 ALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHH
Confidence 65553 4667777999888654
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.18 E-value=2.3e-09 Score=99.60 Aligned_cols=206 Identities=12% Similarity=-0.027 Sum_probs=142.7
Q ss_pred HhhhhccHHHHHHHHhhcccCC---hhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcC
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATD---PKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKN 87 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~---~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~ 87 (265)
-.+-.|+|.+|+..++++.... +.........+.++|...|+++.++.-+ .++...+...++..+...++.
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 157 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDW 157 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchH
Confidence 3456899999999876554322 1122233445578889999988665544 223344455555554444432
Q ss_pred cc---------cccCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHH
Q psy3174 88 GS---------SNFGTH-----LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFY 153 (265)
Q Consensus 88 e~---------~~~~~~-----lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~ 153 (265)
+. ...+.+ ......++.+++.+|+++.|.+.++++++.+|++.-..+..+.+.... |++++|..
T Consensus 158 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~ 235 (389)
T PRK11788 158 QKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ--GDYAAAIE 235 (389)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 21 111222 123445677888999999999999999999888776555555554444 78999999
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCccC----------CCC
Q psy3174 154 TLQDLIDKYGST-PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGNEMS----------VSP 220 (265)
Q Consensus 154 ~~~el~~~~p~t-~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ea~----------p~h 220 (265)
+|+++.+..|.. ...++.++.++..+|++++|...++++++.+|+ +..+++.++...|+.+++. |++
T Consensus 236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 236 ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 999999887764 457888999999999999999999999887444 6678888999999887654 777
Q ss_pred hhhh
Q psy3174 221 PFLF 224 (265)
Q Consensus 221 p~~~ 224 (265)
+.+.
T Consensus 316 ~~~~ 319 (389)
T PRK11788 316 RGFH 319 (389)
T ss_pred HHHH
Confidence 6554
No 15
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.18 E-value=1.6e-09 Score=102.67 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=142.8
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHh---hhc-----CChH-HH-----H-HHHHHH
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL---EEK-----LPEE-LS-----C-IKVLAE 79 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l---~ei-----~~~~-l~-----~-~~~~A~ 79 (265)
.+-+...|+|.+|+..++++....|++ .....+..++|+.+|+++.++ ..+ .++. .. + +.+++.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~-~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRH-PEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 567778888888888876666555554 233445568888888887666 333 1122 22 1 112222
Q ss_pred HhcCCCcCcc--------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHH
Q psy3174 80 YLSIPSKNGS--------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEA 151 (265)
Q Consensus 80 ~l~~~~~~e~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA 151 (265)
.....+...- ...+++++.....+..+...|+.+.|.+.+.+.++..+|.. ++..+..+.. ++++++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~---l~~l~~~l~~--~~~~~a 313 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER---LVLLIPRLKT--NNPEQL 313 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH---HHHHHhhccC--CChHHH
Confidence 2121111000 23578999999999999999999999999999999655553 2233333333 789999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCcc
Q psy3174 152 FYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 152 ~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ea 216 (265)
....++...++|+++.++..+|.+++++|+|++|.+.++++++.+|+ +...++.+...+|+.+++
T Consensus 314 l~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 314 EKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999555 556899999999997654
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.15 E-value=2.4e-09 Score=113.70 Aligned_cols=198 Identities=12% Similarity=0.012 Sum_probs=142.5
Q ss_pred HhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcC---
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKN--- 87 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~--- 87 (265)
...-.|+|.+|+..+++.....|+.. .....++++|..+|+++.++..+ .+........++.|+...++.
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P~~~-~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDPGSV-WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 34457999999998766555555532 23456688899999998665544 222222222233332221110
Q ss_pred -----------------------------------------cc-----cccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 88 -----------------------------------------GS-----SNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 88 -----------------------------------------e~-----~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
+. ..+|.++.....++.++..+|++++|.+.|++
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~ 628 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQR 628 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 22477888888899999999999999999999
Q ss_pred HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CH-
Q psy3174 122 MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SE- 197 (265)
Q Consensus 122 ~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~p- 197 (265)
+++.+|+++-+.+..+.+.... |++++|...|+.+.+..|+++..+..+|.++.++|++++|..++++++.. +|
T Consensus 629 al~~~P~~~~a~~~la~~~~~~--g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 629 VLTREPGNADARLGLIEVDIAQ--GDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9999999887777777775555 77999999999998888888888888999999999999999999999876 22
Q ss_pred -----HHHHHHHHHHHHcCCCCccC
Q psy3174 198 -----DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 198 -----dtl~nl~~~~~~~Gk~~ea~ 217 (265)
.++.+++.++...|++.++.
T Consensus 707 ~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 707 SMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHH
Confidence 24456778888888876543
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.14 E-value=3.1e-09 Score=104.69 Aligned_cols=122 Identities=10% Similarity=-0.026 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++.+....++.++...|++++|.+.|+++++.+|++.......+++.+.. |++++|...|+++.+..|..+.....+
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~--G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA--GQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 566666666666666666666676666666666666665544444444433 556666666666666666655444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD----SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+.++..+|++++|...+++++.. +|..+.+++.++..+|+.+++
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 55566666666666666666644 344556666666666665554
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.13 E-value=2.5e-09 Score=87.48 Aligned_cols=115 Identities=9% Similarity=-0.147 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+++..+.++.++...||++.|.+.|++++..+|++.-+....+.+.... |++++|...|+++....|.++..+.++|.
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML--KEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3445666788999999999999999999999999885555555444434 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
|+..+|++++|...+++++.. +|+...|.+.+...++
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999988 6777777777666543
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.11 E-value=8.1e-09 Score=109.78 Aligned_cols=200 Identities=11% Similarity=-0.071 Sum_probs=143.8
Q ss_pred HhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc--------CChHHHHHH------------H
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK--------LPEELSCIK------------V 76 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei--------~~~~l~~~~------------~ 76 (265)
..+-.|+|.+|+..+++....+|+. .+....+.++|..+|+++.++..+ .++....+. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4556799999999987665555543 234566689999999998776654 111111110 1
Q ss_pred HHHHhcCCCcCc-c--------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH-------
Q psy3174 77 LAEYLSIPSKNG-S--------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH------- 140 (265)
Q Consensus 77 ~A~~l~~~~~~e-~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~------- 140 (265)
.+..+...++.+ + ...|++.+....++.+|...|++++|++.|+++++.+|++..+....+.+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 122122222221 1 335888999999999999999999999999999999998765433222221
Q ss_pred ---------------------------------HHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3174 141 ---------------------------------IANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWD 187 (265)
Q Consensus 141 ---------------------------------l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~ 187 (265)
+....+++++|...|+++....|+++.++..+|.++.++|++++|..
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 01234788999999999999999998888899999999999999999
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 188 LLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 188 ~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.++++++. +|+.+.+++.+....|++.++.
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999886 7778888887777788776654
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=1.5e-08 Score=85.22 Aligned_cols=119 Identities=9% Similarity=0.054 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDE--DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.+.......+.++..+|+++.|.+.+.++++..+ .........+.+.... |++++|...|+++....|..+..+..
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (234)
T TIGR02521 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA--GDFDKAEKYLTRALQIDPQRPESLLE 174 (234)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCChHHHHH
Confidence 3445555666666666666666666666655321 1111111122222222 55666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
+|.++..+|++++|...++++++. +|+.+..++.+....|+..
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 666666666666666666666654 4555555555555555543
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=5.7e-09 Score=87.72 Aligned_cols=122 Identities=7% Similarity=-0.027 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc--CCCHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY--GSTPMLVN 170 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~--p~t~~lLn 170 (265)
|++.+....++.++..+|+++.|.+.++++++.+|++.......+++.... |++++|...|+++.... |.....+.
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~ 139 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ--GKYEQAMQQFEQAIEDPLYPQPARSLE 139 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--ccHHHHHHHHHHHHhccccccchHHHH
Confidence 555566666666666666666666666666665555544333333333333 45666666666655432 23344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
.+|.++..+|++++|...+.++++. +++.+.+++.++...|+..++
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 5666666666666666666666655 344555666666666655443
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.07 E-value=1.5e-08 Score=103.45 Aligned_cols=197 Identities=18% Similarity=0.032 Sum_probs=139.7
Q ss_pred hhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHH
Q psy3174 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLE 97 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE 97 (265)
.+-.|+|.+|+..++++....+...--...++..+|+.+|+++.++.. ++ ..+.... .......+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~--------l~---~~l~~~p----~~~~~~~~ 311 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSI--------LT---ELFYHPE----TIADLSDE 311 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHH--------HH---HHhhcCC----CCCCCChH
Confidence 466788889998887766543211111345557788888888866652 12 1121110 01122356
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDH---------------TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---------------~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
....++.+++..||+++|.+.+.++.+..|+. .-..+..+.+.. ..|++++|...++++....
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~--~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK--YSNDLPQAEMRARELAYNA 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhC
Confidence 67777778899999999999999998876521 112222333333 3378999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHHHH
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSDET 229 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~~ 229 (265)
|..+.++..+|.++..+|++++|+..++++++. ++++...++.++..+|+..++. |++|.+..+...
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999998 5557888899999999887644 999988887665
Q ss_pred HH
Q psy3174 230 TA 231 (265)
Q Consensus 230 ~~ 231 (265)
..
T Consensus 470 ~~ 471 (765)
T PRK10049 470 RD 471 (765)
T ss_pred HH
Confidence 54
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.04 E-value=1.5e-08 Score=105.66 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=132.1
Q ss_pred HhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH-HHHHHHHHHHhcCCCcCc-c
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCIKVLAEYLSIPSKNG-S 89 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~~~~A~~l~~~~~~e-~ 89 (265)
...-.|+|.+|+..++++....|... ..+....+++..|+++.++..+ ..|. ......++.-+...++.+ +
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~~~--a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMSNE--DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 33468999999999876654433321 2344467889999988655443 2222 222112222221222221 1
Q ss_pred --------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 90 --------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 90 --------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
...|+ .+....++.++.++|++++|++.|+++++.+|++.......+++-... |++++|..+|+++...
T Consensus 596 l~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~--G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS--GDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHh
Confidence 22365 899999999999999999999999999999999998777777765544 7899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+|+++.+++++|+++..+|++++|+..++++++.+|+
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999998543
No 24
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.02 E-value=1.2e-08 Score=88.03 Aligned_cols=105 Identities=14% Similarity=-0.020 Sum_probs=92.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH-HHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH-IANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~-l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
..|++.+....++.+|..+||++.|...|+++.+.+|++.-.....|-+- ...|+..+.+|..+++++....|.++..+
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 34889999999999999999999999999999999999886666555542 22333337999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..+|.+++.+|+|++|...++++++.
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999998
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=4.6e-08 Score=96.48 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=99.2
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPMLV 169 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~lL 169 (265)
..|++.+..+.++.++..+||+++|...++++++++|++.......+++.+.. |++++|...++++.... |+++..+
T Consensus 367 l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~--g~~eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 367 LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH--TGIDDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc--cCHHHHHHHHHHHHHhccccCHHHH
Confidence 35788999999999999999999999999999999999876555555554444 67999999999998775 6788889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGK 212 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk 212 (265)
..+|.++..+|+++||...+.+....+|+ ....++.++..+|+
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 99999999999999999999988776555 33455556666664
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.99 E-value=9.7e-09 Score=81.58 Aligned_cols=105 Identities=17% Similarity=-0.011 Sum_probs=89.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++.+.+..++.+++..|+++.|...++++.+.+|+++-.....++..+.. +++.+|..+|+++....|.++..+..
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML--KEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4677888999999999999999999999999999888876655555555445 67999999999998889988888889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+|.|++.+|++++|...++++++.+|+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999988555
No 27
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=1.3e-08 Score=102.62 Aligned_cols=125 Identities=9% Similarity=-0.021 Sum_probs=111.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.|+.+.+.+.+++.+....||+|+|+..+..+++.+||+.-.....+-+- ...+++++|...++++.+..|+++..++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L--~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGV--KRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHH--HHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 57888999999999999999999999999999999999995544444442 2348999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+|.++.++|+++||..++++++.. +|+++.+++.++..+|+.+++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999976 5779999999999999988754
No 28
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.96 E-value=5.8e-09 Score=85.30 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=91.6
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 115 ALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
-+..++++++++|++. .. .+++... .|++++|...|+.+....|+++..++.+|.++.++|++++|...+.++++
T Consensus 12 ~~~~~~~al~~~p~~~-~~--~g~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPETV-YA--SGYASWQ--EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHHHH-HH--HHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567899999999873 22 3455443 48899999999999999999999999999999999999999999999999
Q ss_pred C---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 195 D---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 195 ~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
. +|+++.|++.|+..+|+..++. |++|.....
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 8 7789999999999999998865 888765544
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=5.2e-08 Score=84.77 Aligned_cols=170 Identities=12% Similarity=0.138 Sum_probs=119.7
Q ss_pred chhHHH-HHhhhhccHHHHHHHHhhcccCChhhh--hhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCc
Q psy3174 10 DELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVL--LEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 10 delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~--~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~ 86 (265)
+.+|.. ...|-.|+|..++..++++....|+.. .+..+....+|..+|+++.++.. +-.++...
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~-----------~~~~l~~~-- 100 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAA-----------ADRFIRLH-- 100 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHH-----------HHHHHHHC--
Confidence 345655 566677999999999877666555432 23456667889999998876662 22222111
Q ss_pred CcccccCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHccCCCcHHHHHHH-----------------HHHHH
Q psy3174 87 NGSSNFGTHLEINALKIHTYLTM--------YRNDLALKELKVMQDKDEDHTLTQLCS-----------------AWVHI 141 (265)
Q Consensus 87 ~e~~~~~~~lE~~al~v~~~l~~--------~r~d~Aek~l~~~~~~~~d~~l~~la~-----------------a~v~l 141 (265)
.+.+...+.++.++.++... |+++.|.+.++++++..|++.....+. +.+.+
T Consensus 101 ---p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 177 (235)
T TIGR03302 101 ---PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYL 177 (235)
T ss_pred ---cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233345788888888876 789999999999999999986543222 22222
Q ss_pred HhccccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
..|++.+|...|+++...+|.+ +.++..+|.++..+|++++|.++++.....+|
T Consensus 178 --~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 178 --KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3378999999999999888754 46888999999999999999998776654444
No 30
>KOG1840|consensus
Probab=98.93 E-value=3.3e-08 Score=96.16 Aligned_cols=206 Identities=14% Similarity=0.030 Sum_probs=142.0
Q ss_pred hhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-------------CChHHHHHHH-HHHHhcCC
Q psy3174 19 YYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-------------LPEELSCIKV-LAEYLSIP 84 (265)
Q Consensus 19 fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-------------~~~~l~~~~~-~A~~l~~~ 84 (265)
.+.+.+..+.-..+.+...+|. ......++...|..+|+|+.++.-. .+|.+..+.. +|.++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~P~-~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~ 254 (508)
T KOG1840|consen 176 SIEGTLKGLDIQAKGLGDEDPE-RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL 254 (508)
T ss_pred cchhhHHHHHHHHHhcccCCch-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh
Confidence 3455554444444434444444 4556666888999999998544322 4777666444 78777665
Q ss_pred CcC-cc----------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-------CCCcHHHHHHHHHHH
Q psy3174 85 SKN-GS----------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK-------DEDHTLTQLCSAWVH 140 (265)
Q Consensus 85 ~~~-e~----------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~-------~~d~~l~~la~a~v~ 140 (265)
++. ++ .++|.....+..++..|...||+++|+..++++.++ .++.+-.++.+...
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~- 333 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA- 333 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH-
Confidence 543 22 235666666777788999999999999999999885 33444444444222
Q ss_pred HHhccccHHHHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHH---HHH
Q psy3174 141 IANNVDKLNEAFYTLQDLID--------KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SED---TLI 201 (265)
Q Consensus 141 l~~g~~~~~eA~~~~~el~~--------~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pd---tl~ 201 (265)
+....+++++|..+++.... .+|..+...+.+|+++..+|+|.||++++++|+.+ ++. .+.
T Consensus 334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 22445889999999998643 23346678999999999999999999999999986 444 567
Q ss_pred HHHHHHHHcCCCCccC--------------CCChhhhcH
Q psy3174 202 NNMVTAGRLGKGNEMS--------------VSPPFLFRS 226 (265)
Q Consensus 202 nl~~~~~~~Gk~~ea~--------------p~hp~~~~~ 226 (265)
|++..+..+++..++. |+||.+...
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 8888887777766543 999877654
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.92 E-value=4e-09 Score=94.59 Aligned_cols=207 Identities=15% Similarity=0.121 Sum_probs=95.4
Q ss_pred HHHhhhhccHHHHHHHH-hhcccC-ChhhhhhHHHHHHHHH--HcccChhHHhhhc-----CCh-HHHHHHHHHHHhcCC
Q psy3174 15 VRNSYYLGNYQQCIKEG-QRLKAT-DPKVLLEKDFYVCRSY--LAQKKYKVVLEEK-----LPE-ELSCIKVLAEYLSIP 84 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~-~~~~~~-~~~~~~e~~~~~~Ray--lalg~~~~~l~ei-----~~~-~l~~~~~~A~~l~~~ 84 (265)
.+-.|=.|+|++|++-+ +.+... +|++. .+|..++. ..+++++.++.-. .++ ....+..++.++...
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~---~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDP---EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45667789999999987 333333 23322 55554444 3455665443322 222 233444455553322
Q ss_pred CcCcc-----c--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHhccccHHHHHHHH
Q psy3174 85 SKNGS-----S--NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD--EDHTLTQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 85 ~~~e~-----~--~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~--~d~~l~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
...++ . +...++..+...++++...++++.+...+.++.+.. ++++......|.+.... |++++|...|
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~--G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL--GDPDKALRDY 169 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC--CHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence 22222 0 113456777778889999999999999999987654 56665555556665544 7899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 156 ~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
+++....|+++.+++.++++++.+|++++|..++...... +|.....++.++..+|++.+++ |++|.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9999999999999999999999999999988888777665 7889999999999999998876 87776
Q ss_pred hhcH
Q psy3174 223 LFRS 226 (265)
Q Consensus 223 ~~~~ 226 (265)
+...
T Consensus 250 ~~~~ 253 (280)
T PF13429_consen 250 WLLA 253 (280)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5544
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.91 E-value=6.1e-08 Score=99.10 Aligned_cols=171 Identities=12% Similarity=-0.055 Sum_probs=131.2
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhh---hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC-CCcCc--
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKV---LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI-PSKNG-- 88 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~---~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~-~~~~e-- 88 (265)
..-+++.|++.+|+..++++...+|.. ..+...-++.+++.+|+++.++..+ -..... +....
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l-----------~~~~~~~P~~~~~~ 347 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT-----------AHTINNSPPFLRLY 347 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH-----------HHHhhcCCceEeec
Confidence 446788999999999976654444332 2344445567789999998766632 111111 11100
Q ss_pred --ccccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC
Q psy3174 89 --SSNFGT--HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 89 --~~~~~~--~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~ 164 (265)
....|+ .++...+.++++...|++++|++.++++++..|+++-..+..+.+.... |++++|+..++++....|+
T Consensus 348 ~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~--g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 348 GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR--GWPRAAENELKKAEVLEPR 425 (765)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCC
Confidence 022343 3678889999999999999999999999999999987777777765555 7899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
++.++..+|.+++.+|+|++|+.+++++++.+|+
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998555
No 33
>KOG4626|consensus
Probab=98.89 E-value=4.4e-08 Score=95.51 Aligned_cols=118 Identities=18% Similarity=0.046 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
|.-+.+...++-+|-.++++|.|...|.+++...|.+. .++-|++ ..+|.++-|+..|++..+..|..+..+
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A-----~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay 323 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA-----VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY 323 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch-----hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH
Confidence 56666666666666666666666666666666555544 2222222 223344444444444444444444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
|++|.++-..|+..||+.++.+||.. |||.+.||++++..+|+.++
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence 44444444444444444444444444 44444444444444444433
No 34
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.88 E-value=2.2e-08 Score=82.99 Aligned_cols=101 Identities=13% Similarity=0.034 Sum_probs=92.8
Q ss_pred ccc-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCC
Q psy3174 90 SNF-GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 90 ~~~-~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t 165 (265)
+-. ++++|.++..+.-+...||++.|++.|+-....||.+. ..|.+|+ +..+++.+|+..|.......|++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~-----~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd 102 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF-----DYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA 102 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 344 78999999999999999999999999999999999999 6677766 44489999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 166 PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
|...-+.|+|++..|+.++|...++.|++.
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986
No 35
>KOG4626|consensus
Probab=98.87 E-value=2.2e-08 Score=97.56 Aligned_cols=167 Identities=11% Similarity=0.007 Sum_probs=121.2
Q ss_pred HHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCccc---------ccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy3174 53 YLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGSS---------NFGTHLEINALKIHTYLTMYRNDLALK 117 (265)
Q Consensus 53 ylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~~---------~~~~~lE~~al~v~~~l~~~r~d~Aek 117 (265)
|..+|..+.+|.-- +|--..+..-+|.-+...++..++ --|.....++.++-||..+|.++.|..
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 45555555554432 222244555566666665554221 127777888888889999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 118 ELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 118 ~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.|+++++..|+-. .+..||+ +.+|++++|..-|+|...-.|.....++++|+++-.+|+..+|...+.+|+.
T Consensus 376 ly~~al~v~p~~a-----aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 376 LYLKALEVFPEFA-----AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHhhChhhh-----hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 9999988877644 3333333 4568899999999999888888888899999999999999999999999988
Q ss_pred CCH---HHHHHHHHHHHHcCCCCccC----------CCChhhh
Q psy3174 195 DSE---DTLINNMVTAGRLGKGNEMS----------VSPPFLF 224 (265)
Q Consensus 195 ~~p---dtl~nl~~~~~~~Gk~~ea~----------p~hp~~~ 224 (265)
.+| |...||++++.-.|.-++++ |+-|.+-
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 855 47789999998888887765 7777543
No 36
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=3.9e-08 Score=78.10 Aligned_cols=99 Identities=17% Similarity=0.061 Sum_probs=88.3
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-
Q psy3174 117 KELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD- 195 (265)
Q Consensus 117 k~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~- 195 (265)
..|+++++.+|++.......++..+.. +++++|...|+++.+..|+++..+..+|.++..+|++++|..++.+++..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357889999999987777777776656 78999999999999999999999999999999999999999999999988
Q ss_pred --CHHHHHHHHHHHHHcCCCCccC
Q psy3174 196 --SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 --~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+|++..+++.++..+|+..++.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHH
Confidence 6778999999999999987653
No 37
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.82 E-value=8.7e-08 Score=67.84 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
+...++.++..+|+++.|.+.++++.+..|++.......+.+.... +++++|...|++.....|..+..+..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL--GKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4667888999999999999999999999988865555555554444 78999999999999999988889999999999
Q ss_pred HcCCHHHHHHHHHHHhcCCH
Q psy3174 178 AQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~~p 197 (265)
.+|++++|...+.+++..+|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999987654
No 38
>KOG2002|consensus
Probab=98.80 E-value=1.5e-07 Score=95.38 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=142.7
Q ss_pred ccCCcchhHHHHH-hhhhccHHHHHHHHhhcccCC--hhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH--HHHH
Q psy3174 5 ADNEVDELFDVRN-SYYLGNYQQCIKEGQRLKATD--PKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE--LSCI 74 (265)
Q Consensus 5 ~~~~~delf~vr~-~fy~G~Y~~~i~~~~~~~~~~--~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~--l~~~ 74 (265)
....|+-|-.+-| .|+-|+|+.|...+...-..+ ....-+--+++.|+|-++|+|+.+..-. ..+. +.+.
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 3456777777755 556899999999865443322 2223444677899999999998654322 1111 2222
Q ss_pred HHHHH-HhcCCCcCcc--------cccCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q psy3174 75 KVLAE-YLSIPSKNGS--------SNFGTHLEINALKIHTYLTMY----RNDLALKELKVMQDKDEDHTLTQLCSAWVHI 141 (265)
Q Consensus 75 ~~~A~-~l~~~~~~e~--------~~~~~~lE~~al~v~~~l~~~----r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l 141 (265)
-.+++ |+....-..+ ..+|++.|.+.+++.+|..-+ ..|.|...+.++++..|+++ .+|+.+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~-----~a~l~l 420 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS-----EAWLEL 420 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH-----HHHHHH
Confidence 22222 2222211111 345999999999999999875 67999999999999999988 777777
Q ss_pred H--hccccHHHHHHHHHHHHh---h--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHH--------HH
Q psy3174 142 A--NNVDKLNEAFYTLQDLID---K--YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDT--------LI 201 (265)
Q Consensus 142 ~--~g~~~~~eA~~~~~el~~---~--~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdt--------l~ 201 (265)
+ .-++++..++-.|..+.+ . .+--|..||++|+.|+..|.+++|...+.+|+.+ ++|- .+
T Consensus 421 aql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 421 AQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 6 122444444666655432 1 2235679999999999999999999999999986 4542 68
Q ss_pred HHHHHHHHcCCCCcc
Q psy3174 202 NNMVTAGRLGKGNEM 216 (265)
Q Consensus 202 nl~~~~~~~Gk~~ea 216 (265)
|++.|...+++...+
T Consensus 501 Nlarl~E~l~~~~~A 515 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVA 515 (1018)
T ss_pred HHHHHHHhhhhhhHH
Confidence 999999999987654
No 39
>KOG1840|consensus
Probab=98.79 E-value=3.5e-07 Score=89.03 Aligned_cols=201 Identities=15% Similarity=0.047 Sum_probs=140.7
Q ss_pred HHHhhhhccHHHHHHHHhh-cc---cCChhh--hhhH-HHHHHHHHHcccChhHHhhhc-------------CChHHHH-
Q psy3174 15 VRNSYYLGNYQQCIKEGQR-LK---ATDPKV--LLEK-DFYVCRSYLAQKKYKVVLEEK-------------LPEELSC- 73 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~-~~---~~~~~~--~~e~-~~~~~Raylalg~~~~~l~ei-------------~~~~l~~- 73 (265)
...++-.|.|.+|+.-++. +. ..++.. .+.. .-..+..|..++++..++.-. .||....
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4678889999998877422 11 122211 1111 223578899999997443222 6777554
Q ss_pred HHHHHHHhcCCCcC-cc----------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-----CCCcH-
Q psy3174 74 IKVLAEYLSIPSKN-GS----------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK-----DEDHT- 130 (265)
Q Consensus 74 ~~~~A~~l~~~~~~-e~----------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~-----~~d~~- 130 (265)
+--+|..+-..++. ++ ..++.-...+...+.++..+|++++|.+.+++.+++ +++++
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 44466555444432 22 123555566777888999999999999999999884 66773
Q ss_pred HH--HHHHHHHHHHhccccHHHHHHHHHHHHhhc--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----
Q psy3174 131 LT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKY--------GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----- 195 (265)
Q Consensus 131 l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~--------p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----- 195 (265)
+. .--++|+...+ |+++||+.+|+++.+.. +.+...+|.+|..+.+.+++.+|..++.++..+
T Consensus 366 ~a~~~~nl~~l~~~~--gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 366 LAKIYANLAELYLKM--GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred HHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 22 12224555555 78999999999987542 345668999999999999999999999999876
Q ss_pred --CHHH---HHHHHHHHHHcCCCCccC
Q psy3174 196 --SEDT---LINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 --~pdt---l~nl~~~~~~~Gk~~ea~ 217 (265)
+|++ +.||+.++..+|+.+++.
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 8884 469999999999987654
No 40
>KOG1126|consensus
Probab=98.77 E-value=4.6e-08 Score=95.66 Aligned_cols=209 Identities=13% Similarity=0.080 Sum_probs=113.1
Q ss_pred CcchhHHHHHhhhhcc-------HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHh---hhc---CChHHHHH
Q psy3174 8 EVDELFDVRNSYYLGN-------YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL---EEK---LPEELSCI 74 (265)
Q Consensus 8 ~~delf~vr~~fy~G~-------Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l---~ei---~~~~l~~~ 74 (265)
+.++|+++...|-.|- .++|+..++++..--++.. =...-+.|+|-.+++|+.+. +.+ ++-.+..+
T Consensus 312 ~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 312 DASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 3567888877776664 3455555555433111111 01233468888888887433 333 33334444
Q ss_pred HHHHHHhc-CCCcCcc--------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH-------------
Q psy3174 75 KVLAEYLS-IPSKNGS--------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT------------- 132 (265)
Q Consensus 75 ~~~A~~l~-~~~~~e~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~------------- 132 (265)
..+..-|= -++..+- +.-+.++|.+...+-||-.++++|.|.|.+++++++||...=+
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE 470 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH
Confidence 44443221 1111110 2347788888888888888888888888888888877743211
Q ss_pred ----------------HHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3174 133 ----------------QLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 133 ----------------~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al 193 (265)
.--.||.++. ..+++++.|.-.|+++.+..|.+..++-..+.++.+.|+.++|..++.+|+
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 1113444443 223555555555555555555555555555555555555555555555555
Q ss_pred cC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 194 GD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 194 ~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
-+ +|-..++.+.++.-+|+..+++
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 44 4445555555555555555443
No 41
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=6.9e-07 Score=77.69 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
.....+-..++++..|+++.++.. +..+.. .. ...+...+..+.++.++..+|+++.|...|++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~--------~~~~~~---~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKY--------FEALES---RY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHH---hC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 334455557788999998876662 221111 10 01122336778899999999999999999999
Q ss_pred HHccCCCcHH-----HHHHHHHHHHH----hccccHHHHHHHHHHHHhhcCCCHHH---H--------------HHHHHH
Q psy3174 122 MQDKDEDHTL-----TQLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGSTPML---V--------------NAQVAV 175 (265)
Q Consensus 122 ~~~~~~d~~l-----~~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~t~~l---L--------------n~~A~~ 175 (265)
+++..|++.. ..++.++.... ...+++++|...|+++...+|+++.. + ..+|.+
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887664 23333333220 01267999999999999999986543 1 256888
Q ss_pred HHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCcc
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++.+|++.+|...++++++. .++.+.+++.++..+|+..++
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999987 246889999999999987653
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.75 E-value=2.1e-07 Score=71.37 Aligned_cols=101 Identities=15% Similarity=0.017 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLV 169 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lL 169 (265)
++..+..+..+...|+++.|.+.+.++.+..|++.. ..+..+.+.. ..+++++|...|+++...+|.+ +.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY--AQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 466788999999999999999999999998887642 2222333333 3478999999999999988863 6688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
..+|.++.++|++++|...+.++++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999998665
No 43
>KOG1129|consensus
Probab=98.72 E-value=3.8e-08 Score=89.95 Aligned_cols=176 Identities=10% Similarity=0.010 Sum_probs=135.4
Q ss_pred HHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHH
Q psy3174 49 VCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDL 114 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~ 114 (265)
+.|||+++|.+..+-..+ ..|....+.+++..+..-+.-+. +.+|.+.-.+.-.+.|+..|+..+.
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 479999999886443333 33334455556655443222111 5678888889999999999999999
Q ss_pred HHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 115 ALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
|.+.|+.+++.++.++-.. ++..|. -+++++=|..+|+.+.+..-.+|.+.+++|.|.+.-+.++-+...+++|
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yf----Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYF----YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccc----cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 9999999999998876322 222222 2388999999999999998899999999999999999999999999999
Q ss_pred hcC------CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHHH
Q psy3174 193 AGD------SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSDE 228 (265)
Q Consensus 193 l~~------~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~ 228 (265)
+.. -.|++.|++.+...-|+..-+. |+|.-..+...
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa 436 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA 436 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence 987 4568889999988888865432 88877666544
No 44
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.71 E-value=1.3e-06 Score=89.76 Aligned_cols=190 Identities=16% Similarity=0.025 Sum_probs=127.8
Q ss_pred hccHHHHHHHHhhcccC---ChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHH
Q psy3174 21 LGNYQQCIKEGQRLKAT---DPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLE 97 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~---~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE 97 (265)
.|.|.++|++++.+... -|+.. ..+++=+|+++++++.++. ++.+.+...+. ....+.+++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~---~~a~adayl~~~~P~kA~~-----------l~~~~~~~~~~--~~~~~~~~~ 368 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYA---RRWAASAYIDRRLPEKAAP-----------ILSSLYYSDGK--TFRNSDDLL 368 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHH---HHHHHHHHHhcCCcHHHHH-----------HHHHHhhcccc--ccCCCcchH
Confidence 56778888877666632 24442 4555677788777765443 22222222211 012244555
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCC---------------CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDE---------------DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~---------------d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
...-+...|+..+|+++|...+.++.+..| |-.-.+...+-+.+.. |++.+|...++++....
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~--gdl~~Ae~~le~l~~~a 446 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL--NDLPTAQKKLEDLSSTA 446 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhC
Confidence 456667788889999999998888877322 2222222233332333 67889999999998888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC----------CCChhhhcHHH
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS----------VSPPFLFRSDE 228 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~ 228 (265)
|.++.+++.+|.+++.+|++.+|+..++.++..+|+ +.++++.++..+|++.++. |+|+-++++..
T Consensus 447 P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 447 PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 988888888999999999999999998877777444 6788888888888876542 99998887664
No 45
>KOG0547|consensus
Probab=98.71 E-value=7e-07 Score=85.18 Aligned_cols=159 Identities=12% Similarity=0.158 Sum_probs=122.3
Q ss_pred HHHHHHHHcccChhH--------------Hhhhc-CChHHHHHHHHHHHhcCCCcCcc--------cccCCCHHHHHHHH
Q psy3174 47 FYVCRSYLAQKKYKV--------------VLEEK-LPEELSCIKVLAEYLSIPSKNGS--------SNFGTHLEINALKI 103 (265)
Q Consensus 47 ~~~~Raylalg~~~~--------------~l~ei-~~~~l~~~~~~A~~l~~~~~~e~--------~~~~~~lE~~al~v 103 (265)
.+++++++-.|-+.. +|+-- ..+.+ .+++-+.|+....+.+. +-.|.++...+-++
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 666777776665532 22211 12222 45656666654433211 33589999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
|+++..+++++|.+.|.+++.++|.++..++=.++....+ ++++++...|+|...+||..+...|-.|-++.-|++|+
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~--~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ--HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence 9999999999999999999999999998766665554444 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC---------CHHHHHHHHHHHH
Q psy3174 184 EAWDLLQDTAGD---------SEDTLINNMVTAG 208 (265)
Q Consensus 184 EAe~~l~~al~~---------~pdtl~nl~~~~~ 208 (265)
.|.+.+..|.++ ++..++|.+.+..
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~ 513 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL 513 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence 999999999987 5557777755433
No 46
>KOG1126|consensus
Probab=98.70 E-value=1.2e-07 Score=92.72 Aligned_cols=199 Identities=15% Similarity=0.132 Sum_probs=147.0
Q ss_pred hHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHH----------HHHHHcccChhHHhhhcCChHHHHHHHHHHH
Q psy3174 12 LFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYV----------CRSYLAQKKYKVVLEEKLPEELSCIKVLAEY 80 (265)
Q Consensus 12 lf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~----------~Raylalg~~~~~l~ei~~~~l~~~~~~A~~ 80 (265)
|-++ |.+|=++.|.+|.+.++.+....|--.---++|. .-+||+++-.+ . ++.....|..++.+
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~----~-~~~sPesWca~GNc 430 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID----T-DPNSPESWCALGNC 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh----h-CCCCcHHHHHhcch
Confidence 3344 7889999999999998777665553211122221 13344432221 1 23334567777766
Q ss_pred hcCCCcCcc-------------------------------------------cccCCCHHHHHHHHHHHHHcCChHHHHH
Q psy3174 81 LSIPSKNGS-------------------------------------------SNFGTHLEINALKIHTYLTMYRNDLALK 117 (265)
Q Consensus 81 l~~~~~~e~-------------------------------------------~~~~~~lE~~al~v~~~l~~~r~d~Aek 117 (265)
++-+++-+. .-.|.+.-+++=+++||+++++++.|+-
T Consensus 431 fSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHH
Confidence 654433211 1128899999999999999999999999
Q ss_pred HHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 118 ELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 118 ~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.|+++++++|-+.+..-..+-+.-.. ++.++|+.+|+++.-..|.++......|.++...++++||...|++.-+.-|
T Consensus 511 ~fqkA~~INP~nsvi~~~~g~~~~~~--k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 511 HFQKAVEINPSNSVILCHIGRIQHQL--KRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHhhhcCCccchhHHhhhhHHHHHh--hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 99999999999875544444443333 7899999999999999999999999999999999999999999999888733
Q ss_pred H---HHHHHHHHHHHcCCCCccC
Q psy3174 198 D---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 198 d---tl~nl~~~~~~~Gk~~ea~ 217 (265)
+ +++-++.++-.+|+...+.
T Consensus 589 ~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 589 QESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred chHHHHHHHHHHHHHHccchHHH
Confidence 3 7788899999999987765
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.70 E-value=2.4e-07 Score=84.38 Aligned_cols=118 Identities=10% Similarity=-0.073 Sum_probs=60.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++++....++.++..+|+++.|...|.++++++|++..+....+.+... .|++++|...|++..+..|+++....
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~--~g~~~eA~~~~~~al~~~P~~~~~~~- 170 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY--GGRYELAQDDLLAFYQDDPNDPYRAL- 170 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence 356666666666666666666666666666666666655333322222221 25566666666666666665543111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~ 213 (265)
...+....+++++|...+.++... +|+... .+.+...+|+.
T Consensus 171 ~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~ 212 (296)
T PRK11189 171 WLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKI 212 (296)
T ss_pred HHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCC
Confidence 111233455566666666555443 444332 23444445554
No 48
>KOG0624|consensus
Probab=98.69 E-value=1.1e-06 Score=81.02 Aligned_cols=180 Identities=13% Similarity=0.123 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHcccChhHHhhhc------CChH-HHHHHHHHHHhcCCCcCcc--------cccCCCHHHHHHHHHHHHH
Q psy3174 44 EKDFYVCRSYLAQKKYKVVLEEK------LPEE-LSCIKVLAEYLSIPSKNGS--------SNFGTHLEINALKIHTYLT 108 (265)
Q Consensus 44 e~~~~~~Raylalg~~~~~l~ei------~~~~-l~~~~~~A~~l~~~~~~e~--------~~~~~~lE~~al~v~~~l~ 108 (265)
++.+-.-...++.|++..++... .+.. ...++.-..||.....+.. +.-|+..-+..-++.++++
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 33444446667777776655544 2333 3346667777776655433 3348888889999999999
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHH--------HHHHHHHH-----HhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 109 MYRNDLALKELKVMQDKDEDHTLTQ--------LCSAWVHI-----ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~~l~~--------la~a~v~l-----~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
+|.++.|+..|+.+++-+|.+-+.+ .-+-|+-. +.|+|..+.|+.+...+.+..||+..+.-..|-|
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 9999999999999998777432222 12223211 1467899999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhh
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFL 223 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~ 223 (265)
++..|+...|...++.+-.+ +.++++-...++...|...+.+ |+|..+
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 99999999999999999776 8889999999999999877654 988643
No 49
>KOG1173|consensus
Probab=98.67 E-value=5.3e-07 Score=87.11 Aligned_cols=210 Identities=16% Similarity=0.030 Sum_probs=153.9
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhh---hc--CChH-HHHHHHHHHHhcCCCcC-c
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLE---EK--LPEE-LSCIKVLAEYLSIPSKN-G 88 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~---ei--~~~~-l~~~~~~A~~l~~~~~~-e 88 (265)
-..||-+.|++|......+-..+|-. .+...+..-++..+|+...... .+ ..|. ...+-.++.|+-+-++. +
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh-~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFH-LPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCC-cchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHH
Confidence 45789999999999865555555432 2333333447888888653221 11 2222 33455566665433322 1
Q ss_pred c----------------------------c--------------ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 89 S----------------------------S--------------NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 89 ~----------------------------~--------------~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
+ + ..+++-.-...+++=|.++|.+.+|++-|.++..+.
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 1 0 127777777788889999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C
Q psy3174 127 EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-------GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---S 196 (265)
Q Consensus 127 ~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-------p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~ 196 (265)
|.+++..-=++-|.... +.|.+|..+|+...+.- +-...++|++|-++.++++++||...++++|.+ +
T Consensus 411 P~Dplv~~Elgvvay~~--~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 411 PSDPLVLHELGVVAYTY--EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred CCcchhhhhhhheeehH--hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 99998776666665545 67999999999986322 113347899999999999999999999999988 9
Q ss_pred HHHHHHHHHHHHHcCCCCccC----------CCChhhhcHHH
Q psy3174 197 EDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSDE 228 (265)
Q Consensus 197 pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~ 228 (265)
+++....+.++.++|+.+.|+ |++.++..++.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999999998765 99888777754
No 50
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.65 E-value=8.1e-07 Score=83.17 Aligned_cols=110 Identities=14% Similarity=-0.020 Sum_probs=94.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+...+..++..|+++.|...|+++++.+|++.......+.+.+.. |++++|+..++++.+..|..+..+..+|.+++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~--g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL--GNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 345577889999999999999999999999876555555554444 789999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 179 QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
+|+|++|...++++++. ++++...+..|...+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998 677777777776555
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=9.1e-07 Score=89.45 Aligned_cols=123 Identities=12% Similarity=-0.021 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Q psy3174 71 LSCIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHI 141 (265)
Q Consensus 71 l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l 141 (265)
..+..++|+.....+..+. .-.|++..+....+.++.+.+|+|+|...+++++..+||+...+...|-.-.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 4567777777766665543 2359999999999999999999999999999999999999766544433322
Q ss_pred HhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.. |++++|+.+|+++...+|+++..+.++|.+++..|+.++|...+++|++.
T Consensus 166 ~~--g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 166 EI--GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred Hh--cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 78999999999999999999999999999999999999999999999987
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=8.9e-07 Score=76.28 Aligned_cols=104 Identities=11% Similarity=0.114 Sum_probs=88.1
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHcCC--H
Q psy3174 109 MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL-IAQDK--Y 182 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~-~~~g~--~ 182 (265)
.++.+.+...+++.++.+|++. .+|..++ ...+++++|...|+++....|+++.++.++|.++ ...|+ +
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~-----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS-----EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 5667888888889999999998 5555553 2348899999999999999999999999999985 67788 5
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 183 EEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 183 eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
++|..+++++++. +++++++++.++..+|+..++.
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998 7779999999999999987654
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.60 E-value=5.3e-06 Score=75.53 Aligned_cols=164 Identities=15% Similarity=0.050 Sum_probs=114.1
Q ss_pred HHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCC
Q psy3174 47 FYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYR 111 (265)
Q Consensus 47 ~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r 111 (265)
+.....|..+|+++.++..+ .+....+...++.++...++.+. ...|++......++.++..+||
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33345577777776555433 23334555556665555444332 2348889999999999999999
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 112 NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
+++|.+.++++++.+|++.. ...|..+....+++++|...|++.....+.... +.+.+++.+|++.++. .+..
T Consensus 148 ~~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~---~~~~~~~~lg~~~~~~-~~~~ 220 (296)
T PRK11189 148 YELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYEKLDKEQW---GWNIVEFYLGKISEET-LMER 220 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHhhCCcccc---HHHHHHHHccCCCHHH-HHHH
Confidence 99999999999999999873 235666665667899999999887655432221 2456777888887653 4444
Q ss_pred Hh---cC-------CHHHHHHHHHHHHHcCCCCccC
Q psy3174 192 TA---GD-------SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 192 al---~~-------~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+. +. ++++.++++.++..+|+..++.
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 43 22 4467899999999999988765
No 54
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.6e-06 Score=76.98 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=110.5
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
..++...++..-.+......|++.+|...++++...+|++.-+...++....-. |+..+|-.-|.+..+..|..|..+
T Consensus 94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~--Gr~~~Ar~ay~qAl~L~~~~p~~~ 171 (257)
T COG5010 94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL--GRFDEARRAYRQALELAPNEPSIA 171 (257)
T ss_pred ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc--cChhHHHHHHHHHHHhccCCchhh
Confidence 346888899988999999999999999999999999999986555555553333 889999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|++|..++..|+++.|+.++..+... ++-+..|++.+.-.+|+..++.
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999999999999876 6668889999999999987654
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.59 E-value=7e-07 Score=78.11 Aligned_cols=121 Identities=13% Similarity=0.160 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHhccccHHHHHHHHHHHHhh--cCCCHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT-LTQLCSAWVHIANNVDKLNEAFYTLQDLIDK--YGSTPMLV 169 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~-l~~la~a~v~l~~g~~~~~eA~~~~~el~~~--~p~t~~lL 169 (265)
|++.-....++.+|-+.|..|.|.+.|++++.++|++- +.+.-.+|+ ..+ |++++|...|++.... +|.-+..+
T Consensus 66 Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL-C~q--g~~~eA~q~F~~Al~~P~Y~~~s~t~ 142 (250)
T COG3063 66 PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL-CAQ--GRPEEAMQQFERALADPAYGEPSDTL 142 (250)
T ss_pred cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH-HhC--CChHHHHHHHHHHHhCCCCCCcchhh
Confidence 67788899999999999999999999999999999874 334444444 555 6999999999999865 56666688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcc
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDS---EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~---pdtl~nl~~~~~~~Gk~~ea 216 (265)
-++++|.+++|+++.|+.+++++++.+ |-++.-++.....-|+...+
T Consensus 143 eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 143 ENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 899999999999999999999999994 44666666666666665443
No 56
>KOG0547|consensus
Probab=98.55 E-value=4.4e-06 Score=79.88 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=89.7
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC------cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED------HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d------~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
.++|..+|+..+.++|+..++++|.|.+.|..++++.|+ ++...+.-+.+ +.+=.+++..|..+.++..+..|
T Consensus 456 kkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 456 KKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDP 534 (606)
T ss_pred HhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCc
Confidence 468999999999999999999999999999999999998 33333333322 11222889999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..-...-++|...+|+|+.+||.++++++...
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 98889999999999999999999999999876
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.54 E-value=2.8e-06 Score=80.46 Aligned_cols=226 Identities=13% Similarity=0.061 Sum_probs=141.7
Q ss_pred HhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChHHH-HHH-HHHHHhcCCCcCcc
Q psy3174 17 NSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEELS-CIK-VLAEYLSIPSKNGS 89 (265)
Q Consensus 17 ~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~-~~~-~~A~~l~~~~~~e~ 89 (265)
-.+..|+|+++.+...+....++. ..-.....+++-..+|+++....-+ .+|... +.. ..+++....++.+.
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 345569999998776443322211 1122344467778888887554433 233322 222 22555444444332
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC--cHHHHHH-HHHHHHH---hccccHHHHHHH
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED--HTLTQLC-SAWVHIA---NNVDKLNEAFYT 154 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d--~~l~~la-~a~v~l~---~g~~~~~eA~~~ 154 (265)
...|++++...+.+.+|+..|+++.|.+.+.++.+.... .....+- .+|+.+. .+....+....+
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456999999999999999999999999999888875443 2222222 3454433 222344556666
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 155 LQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 155 ~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
.+++....|+++.+....|..+...|+.++|+..++++++. ||+...-.+.+ ..|++.++. |++|.
T Consensus 252 w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 252 WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHH
Confidence 66666777888999999999999999999999999999988 55433222222 235544433 88876
Q ss_pred hhcH----HHHHHHHHHHHhhccccCC
Q psy3174 223 LFRS----DETTATLDACGLQSNSEST 245 (265)
Q Consensus 223 ~~~~----~~~~~~FD~~~~~~~~~~~ 245 (265)
+.-. .-....|++..+.|...+.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5432 3355557777777765543
No 58
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=1.6e-06 Score=76.82 Aligned_cols=124 Identities=15% Similarity=-0.027 Sum_probs=107.2
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|+.++. +...-.+...|+-|.+-....+...-.+.+.-...+.+-..+.. |++.+|...|+++....|.+...+|
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~--g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--GNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHh--cchHHHHHHHHHHhccCCCChhhhh
Confidence 34667777 88888999999999999988888777777765444455555545 7899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+|+++++.|++++|...+.++++. +|..+.|++..+...|+..++.
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 9999999999999999999999998 8889999999999999987653
No 59
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.51 E-value=4.7e-06 Score=69.64 Aligned_cols=119 Identities=8% Similarity=0.026 Sum_probs=91.2
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
.+......+.++.++...|++++|...++++++..++.. ......+.+. ...|++++|...|++..+.+|..+..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIY--ASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 356778899999999999999999999999998766532 2222222222 23488999999999999999999999
Q ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q psy3174 169 VNAQVAVLIAQDK--------------YEEAWDLLQDTAGDSEDTLINNMVTAGRLGK 212 (265)
Q Consensus 169 Ln~~A~~~~~~g~--------------~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk 212 (265)
+..+|.++..+|+ +++|.+++++++..+|+.....+..+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 9999999999988 5777777777777777765445445555554
No 60
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.50 E-value=1.2e-05 Score=73.91 Aligned_cols=106 Identities=10% Similarity=0.050 Sum_probs=87.9
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH---
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP--- 166 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~--- 166 (265)
..++.........+.++..+|+++.|++.++++++.+|++.......+.+.... |++++|..++++.....|..+
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~--g~~~eA~~~l~~~l~~~~~~~~~~ 185 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ--GRFKEGIAFMESWRDTWDCSSMLR 185 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--CCHHHHHHHHHhhhhccCCCcchh
Confidence 345788888889999999999999999999999999999976666666665444 889999999999988776322
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 167 -MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 167 -~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
..+..+|.++..+|++++|..++.++...+|
T Consensus 186 ~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 186 GHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 2345799999999999999999999976633
No 61
>KOG1155|consensus
Probab=98.49 E-value=1.7e-06 Score=82.16 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=107.6
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV---DKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~---~~~~eA~~~~~el~~~~p~t~~l 168 (265)
.|+.+-+..+.++=|..|.+...|..-|+++++++|-+- -||.+|.+.= +-.-=|.++|++....-|+++-+
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy-----RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRl 434 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY-----RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRL 434 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-----HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHH
Confidence 489999999999999999999999999999999999888 7999885321 33445999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+..+|-||.+.++.+||...+.+|+.. +.+.+.-++-++..++...++.
T Consensus 435 w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 435 WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999987 5578889999999998877653
No 62
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.49 E-value=5e-06 Score=69.07 Aligned_cols=116 Identities=10% Similarity=-0.047 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
..++....+.++..+|+++.|...+++++.+.+++.. +....+.+.. ..|++++|...|++.....|.....++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~--~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT--SNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 4677888999999999999999999999988766431 2222233333 3388999999999999999988888999
Q ss_pred HHHHHH-------HcCCHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHcCC
Q psy3174 172 QVAVLI-------AQDKYEEAWDLLQDT-------AGDSEDTLINNMVTAGRLGK 212 (265)
Q Consensus 172 ~A~~~~-------~~g~~eEAe~~l~~a-------l~~~pdtl~nl~~~~~~~Gk 212 (265)
+|.++. .+|++++|...+.++ +..+|+..-.........|+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 999999 888888666666555 44466433333333334443
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.46 E-value=4.9e-06 Score=79.01 Aligned_cols=177 Identities=13% Similarity=0.004 Sum_probs=120.9
Q ss_pred HHhhhhccHHHHHHHHhhcc---cCChhhhhhHHHHHHHHHHcccChhH---Hhhhc--CCh-----HHHHHHHHHHHhc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLK---ATDPKVLLEKDFYVCRSYLAQKKYKV---VLEEK--LPE-----ELSCIKVLAEYLS 82 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~---~~~~~~~~e~~~~~~Raylalg~~~~---~l~ei--~~~-----~l~~~~~~A~~l~ 82 (265)
.-+.-.|+|+.++...+.+. ..+++.........+..++..+..+. .+... ..| .......++..+.
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 44566899998888765554 33444433333344444565544321 22222 233 3455555666665
Q ss_pred CCCcCcc---------cccCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHhccccHH
Q psy3174 83 IPSKNGS---------SNFGTHLEIN--ALKIHTYLTMYRNDLALKELKVMQDKDEDHT--LTQLCSAWVHIANNVDKLN 149 (265)
Q Consensus 83 ~~~~~e~---------~~~~~~lE~~--al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~--l~~la~a~v~l~~g~~~~~ 149 (265)
..+..+. .+.|++.... .+.....+.-++.+.+.+.+++.++..|+++ -..++.+|+.+.. ++++
T Consensus 275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~--~~~~ 352 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH--GEFI 352 (409)
T ss_pred HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc--ccHH
Confidence 5554432 3456665432 3333444556889999999999999999999 8888999998766 7899
Q ss_pred HHHHHHH--HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 150 EAFYTLQ--DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 150 eA~~~~~--el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+|...|+ ...+..|+... ...+|.++.++|+.++|..++++++..
T Consensus 353 ~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999 46677886655 448999999999999999999998764
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.45 E-value=2.7e-06 Score=78.12 Aligned_cols=119 Identities=10% Similarity=-0.090 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN--VDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g--~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
..|..++.+.++...|+++.|.+.++++++..|++...... ++.....| .++...+...++.....+|.....+..+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 34445555555555555555555555555555444422111 11111111 1233333333333223333444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
|.+++.+|++++|+..++++++. ++....+++.++...|+.+
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 44444444444444444444444 2223344444444444443
No 65
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=4.2e-06 Score=68.04 Aligned_cols=95 Identities=19% Similarity=0.141 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT---QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~---~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
.-..+.++.++...|+++.|...|+.+++..+|..+. .+.++++.+.. +++++|...++.+ ...++.+.....+
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~--~~~d~Al~~L~~~-~~~~~~~~~~~~~ 124 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ--GQYDEALATLQQI-PDEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHhc-cCcchHHHHHHHH
Confidence 4556677889999999999999999999987777544 44446665545 7899999999774 3445677788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHh
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al 193 (265)
|.+++++|++++|...+++|+
T Consensus 125 Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999999875
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.39 E-value=8.4e-07 Score=61.95 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=42.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.|++++|...|+++...+|.++..+..+|.|+.++|++++|...++++++.+|
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 36788888888888888888888888888888888888888888888877644
No 67
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.38 E-value=3.1e-06 Score=70.26 Aligned_cols=75 Identities=12% Similarity=-0.187 Sum_probs=69.7
Q ss_pred hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
...|++++|..+|+-+....|+...-+.++|.|+-++|+|++|...+..|+.+ ||....|+++|+..+|+...+.
T Consensus 46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 34589999999999999999999999999999999999999999999999988 8889999999999999987643
No 68
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.34 E-value=4.7e-05 Score=80.47 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPMLV 169 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~lL 169 (265)
+.+......++..|.+.|++++|.+.|..|.+. .||. .+..+. +......+++++|+.+|+++.... +.+...+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~TynsL--I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFFSAL--VDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH--HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 445666777777788888888888888888774 3442 222221 112223467888888888877653 3566677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCccC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD----SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|.+..++.+.|++++|..++.+..+. +..+...+|..+...|+.+++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77778888888888888888777554 3335667777777777776654
No 69
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.33 E-value=2.5e-06 Score=62.86 Aligned_cols=81 Identities=22% Similarity=0.176 Sum_probs=58.9
Q ss_pred cCChHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3174 109 MYRNDLALKELKVMQDKDEDH--TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~--~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe 186 (265)
+|+++.|...+.++++.+|.+ ....+..|++.+.. |++++|+.++++ ....|.++.....+|-|++++|+|+||.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~--~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ--GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT--THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC--CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 688999999999999988842 32333234444434 789999999988 5555555566667799999999999999
Q ss_pred HHHHHH
Q psy3174 187 DLLQDT 192 (265)
Q Consensus 187 ~~l~~a 192 (265)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 998875
No 70
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.33 E-value=1.5e-06 Score=61.28 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcCCH
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD-KYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g-~~eEAe~~l~~al~~~p 197 (265)
.+++++|+..|++..+..|+++.++.++|.|++.+| ++++|...++++++++|
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 377888888888888888888888899999999999 79999999999887655
No 71
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.32 E-value=4.1e-05 Score=71.51 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=137.2
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---------CChHHHHHHHHHHH--
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---------LPEELSCIKVLAEY-- 80 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---------~~~~l~~~~~~A~~-- 80 (265)
|-..|-..-.|.|..+..-+..+....|... +..-+..|+|+.+|.++.++.-+ +++...-+.-.|.-
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~-~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHP-EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 4455667777777777665433433333321 11233357777777776554433 34443333333321
Q ss_pred hcCCCcC-cc-----------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccH
Q psy3174 81 LSIPSKN-GS-----------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKL 148 (265)
Q Consensus 81 l~~~~~~-e~-----------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~ 148 (265)
+....+. .+ .....++++....+.=+...|+.|.|.+.+++.++-.-|..+..+.. .. ..+++
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~----~l-~~~d~ 310 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP----RL-RPGDP 310 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh----hc-CCCCc
Confidence 1111110 00 11256799999999999999999999999999999766666544433 22 22567
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcc
Q psy3174 149 NEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 149 ~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea 216 (265)
..=.+..++-...||++|.++.-+|-.+++.+.|.+|...++.|+.. ...+..-++.++..+|++.++
T Consensus 311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 77778888889999999999999999999999999999999999988 666888899999999998653
No 72
>KOG2376|consensus
Probab=98.31 E-value=3.7e-05 Score=74.96 Aligned_cols=196 Identities=17% Similarity=0.174 Sum_probs=123.2
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhh--hhhHHHHHHHHHHcccChhHHhhhc-CChHHH------HHHHHHHHhc
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKV--LLEKDFYVCRSYLAQKKYKVVLEEK-LPEELS------CIKVLAEYLS 82 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~--~~e~~~~~~Raylalg~~~~~l~ei-~~~~l~------~~~~~A~~l~ 82 (265)
|-+|..+--.|.|+++++-+.++....|+. .+.+- .=+.|.+++|+.++..| .++.+. .=+++-.|-.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cK---vValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCK---VVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhh---HhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 455677778899999999987777654442 21111 23588999999888666 333211 1233444433
Q ss_pred CCCcCcc-----cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 83 IPSKNGS-----SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 83 ~~~~~e~-----~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
..- +++ +..+.+.-++-+.+|++.+++|||+|-++|+...+-+.|+.-.++-...+..+. -..+- ..+
T Consensus 93 nk~-Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~--~~q 165 (652)
T KOG2376|consen 93 NKL-DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ--LLQ 165 (652)
T ss_pred ccH-HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH--HHH
Confidence 221 111 222445557777888999999999999999888776665543333322221111 11111 122
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----------C-HH-------HHHHHHHHHHHcCCCCccC
Q psy3174 158 LIDKYG-STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----------S-ED-------TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 158 l~~~~p-~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----------~-pd-------tl~nl~~~~~~~Gk~~ea~ 217 (265)
....-| +|..++.+.|++++-.|+|++|+++|+.|+.. + .+ +-..|+.|++.+|+..++.
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 222233 47789999999999999999999999999443 2 11 2357899999999998764
No 73
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.31 E-value=2.7e-05 Score=80.29 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=111.5
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhc-CCCcC------cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLS-IPSKN------GSSNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~-~~~~~------e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
++=+|+.+++|+.+..-+ ..... .+-.. ...-+++-++...++++++...|++++|++.+.+
T Consensus 373 L~yA~ld~e~~~~A~~~l-----------~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 373 LYYSLNESEQLDKAYQFA-----------VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred HHHHHHhcccHHHHHHHH-----------HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356889999998655422 11111 11000 0123578889999999999999999999999999
Q ss_pred HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 122 MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 122 ~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
++...|.+.-..++.|-+.... |++.+|..+++.+...+|++..+..++|.+.+.+|+|.+|+.+...+++..||
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~R--g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLAR--DLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 9999999998888877776655 88999999999998899999999999999999999999999999999998444
No 74
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.31 E-value=1.9e-05 Score=62.91 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCC---CHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGS---TPMLVN 170 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~---t~~lLn 170 (265)
++.+.++-++-.+||.++|...|+++++.+.+... ...++++++ ..-|++++|..++++....+|+ ...+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~--~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD--RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 56788889999999999999999999997766542 223344433 2238899999999999999997 666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-+|.++..+|+++||...+.+++..
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7889999999999999999888753
No 75
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1e-05 Score=73.27 Aligned_cols=104 Identities=15% Similarity=-0.020 Sum_probs=92.3
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
+.|++.|...+++++|+.+||++.|...|.++.++.+|++-.. ++++.+.- .|+.-..++..+|+++....|.++..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~-a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ-AGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3599999999999999999999999999999999999986554 44454432 35567789999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+..+|..++++|+|.+|....+..++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 999999999999999999999999988
No 76
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.30 E-value=7.5e-05 Score=78.96 Aligned_cols=118 Identities=12% Similarity=0.087 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPMLVNAQVA 174 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~lLn~~A~ 174 (265)
.....++..|.+.|+++.|.+.|+.|.+.+ ++++.+..+. +......|++++|..+|+++.... ..+...++.+..
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL--I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA--VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555666666666666666665543 1222111111 111112355666666666665541 123445666666
Q ss_pred HHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCcc
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD----SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++.+.|++++|..++.+..+. +..+...+|..+...|+.+++
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 666666666666666666654 333555666666666665544
No 77
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=1.7e-05 Score=75.82 Aligned_cols=122 Identities=17% Similarity=0.086 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+..+.+.+=.+..+..++.+|.|++.+...+..-||++-.+.+.+-+.+.. ++..+|...++.+....|..+.+..++
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~--nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA--NKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 678899999999999999999999999999999999998877777776655 789999999999999999989999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|.++++.|++.||..+|.+.+.. +|+..--|+..+..+|+..++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 99999999999999999998876 888888999999999987654
No 78
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.27 E-value=9.3e-06 Score=62.12 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHH
Q psy3174 130 TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTL 200 (265)
Q Consensus 130 ~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl 200 (265)
+...++.... ..+++++|...|+++.+.+|++ +..+..+|.+++..|++++|..++.+++.. .|+++
T Consensus 4 ~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVL----KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHH----HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3344444443 3488999999999999999865 457888999999999999999999999986 25578
Q ss_pred HHHHHHHHHcCCCCccC----------CCChhhhc
Q psy3174 201 INNMVTAGRLGKGNEMS----------VSPPFLFR 225 (265)
Q Consensus 201 ~nl~~~~~~~Gk~~ea~----------p~hp~~~~ 225 (265)
.+++.++..+|+..++. |+++.+..
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999987644 76665543
No 79
>KOG1129|consensus
Probab=98.27 E-value=5.9e-06 Score=75.83 Aligned_cols=191 Identities=14% Similarity=0.059 Sum_probs=129.4
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----C-ChHHHHHHHHHHHhcCCCcC--
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----L-PEELSCIKVLAEYLSIPSKN-- 87 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~-~~~l~~~~~~A~~l~~~~~~-- 87 (265)
|.++-+|-|+.|-.-.+.-..+.| ..+.-.++.|+|-...+...++..+ + |.++..+...|......++.
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 556678888888877643222222 2334566678899988887555444 2 22233333344332221111
Q ss_pred ----------------cc-----------cc--------------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 88 ----------------GS-----------SN--------------FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 88 ----------------e~-----------~~--------------~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
|+ ++ -..++|++..++.|.+.-+.+|.+..-+.+++...
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 11 11 15788888888888888888888888888887743
Q ss_pred C-CcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---H
Q psy3174 127 E-DHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---T 199 (265)
Q Consensus 127 ~-d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---t 199 (265)
. |. +-+..|.|+. .+.|.+.-|..-|+=.....|+....||++|+.-++.|+.++|..++.-|-++.|+ .
T Consensus 389 t~~~---~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 389 TQPG---QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred cCcc---hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 2 11 2346888886 45588999999999888888888889999999999999999999999888887776 3
Q ss_pred HHHHHHHHHHcC
Q psy3174 200 LINNMVTAGRLG 211 (265)
Q Consensus 200 l~nl~~~~~~~G 211 (265)
-.|+..++.+.|
T Consensus 466 ~~Nl~~~s~~~g 477 (478)
T KOG1129|consen 466 TTNLQFMSVHYG 477 (478)
T ss_pred ccceeEEeeecC
Confidence 457766665555
No 80
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=3e-05 Score=63.04 Aligned_cols=116 Identities=15% Similarity=0.024 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH---HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT---QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQ 172 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~---~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~ 172 (265)
.+..+......++.+.+.+.+..+.+-.|+++-. .|..+-+.+ ..|++++|...|+++....|+. +.....+
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~--~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY--EQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4455566667899999999999999988888433 343444433 3488999999999999988753 4467789
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|.+++.+|+|++|...|...-.. .|....-++-++..+|+.+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999774333 666777889999999987653
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.25 E-value=1.5e-05 Score=71.78 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=85.4
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcCC---CHHHHH
Q psy3174 96 LEINALKIHTY-LTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYGS---TPMLVN 170 (265)
Q Consensus 96 lE~~al~v~~~-l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p~---t~~lLn 170 (265)
-...+..+..+ +..|+++.|...|+.+++..|++..+-.+.-|++-. ...+++++|...|+.+...||+ .+..+.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45667777766 567999999999999999999987655555555443 2348899999999999999886 566888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHHH
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pdt 199 (265)
.+|.|+..+|++++|..+++++++.+|+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 89999999999999999999999987763
No 82
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.24 E-value=8.9e-06 Score=56.67 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=56.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~ 166 (265)
.++.+++..|+++.|++.|+++++.+|++.-.....+++.... |++++|...|+++.+..|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ--GRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCC
Confidence 5688999999999999999999999999998888888887755 889999999999999999875
No 83
>KOG2002|consensus
Probab=98.21 E-value=0.00013 Score=74.49 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH-TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
--.|..+.++.+|+.+|+++.|-+.|.++...++|+ ++.....+-+.+.. +.+++|...|+.+....|+.+..+.-+
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~--~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR--GDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh--chHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 345678999999999999999999999999999998 66666666666666 669999999999999999988888888
Q ss_pred HHHHHHcC----CHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 173 VAVLIAQD----KYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 173 A~~~~~~g----~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
|.+|...+ ..++|..++.++++. +.+...+++.++..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 88888887 667788888888776 44445555544443
No 84
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=2.7e-05 Score=73.88 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+-.+...+...+|++.|...++++.+.+|+ ....+|..++ +.++-.+|..+..+.....|.+..+|+.+|..++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-v~~~LA~v~l----~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE-VAVLLARVYL----LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc-HHHHHHHHHH----hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 333455666789999999999999988876 4445555554 33677899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC
Q psy3174 179 QDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
.++++.|..+.+++.+..|+ +...|+.|+..+|+.++|+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999555 8899999999999999876
No 85
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.20 E-value=5.3e-05 Score=76.62 Aligned_cols=31 Identities=16% Similarity=-0.045 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
.+......++..|.+.|++++|.+.|++|.+
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3445555566666666666666666666655
No 86
>KOG1125|consensus
Probab=98.17 E-value=7.6e-05 Score=72.58 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.+++.-.-++.+|...|.+|.|.+.|+.++...|.+-+ -|..|. .++++..||+..|+++.+..|.-.-+..
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-----lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-----LWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH-----HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 78899999999999999999999999999999998873 465554 4568999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC-----------CH--HHHHHHHHHHHHcCCCC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD-----------SE--DTLINNMVTAGRLGKGN 214 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~-----------~p--dtl~nl~~~~~~~Gk~~ 214 (265)
++|+++|.+|-|.||.+.|..||.+ ++ .++.+|=.+...+++++
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 9999999999999999999999987 11 35667777777788765
No 87
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=1.6e-05 Score=71.14 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcCC---CHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYGS---TPMLVNAQ 172 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p~---t~~lLn~~ 172 (265)
+-.|..+.-+++.|+|+.|+..|+..++-.|.++.+..|.=|++=. -++|++++|-++|..+...+|+ .|..|.-+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4488999999999999999999999999999999999999998654 4559999999999999999885 56689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~pdt 199 (265)
|.|...+|+.++|-..|+++.+..|++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999986664
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.16 E-value=9.3e-05 Score=67.55 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH-HHHHHHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY-EEAWDLL 189 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~-eEAe~~l 189 (265)
++..|-..|.++.+..+.++.+....++..+.. |+++||..++++..+..|..+..+.++++|...+|+. +++.+++
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~--~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL--GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC--T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 477777777777666556666666667776655 6677777777777777777777777777777777777 4455555
Q ss_pred HHHhcCCH
Q psy3174 190 QDTAGDSE 197 (265)
Q Consensus 190 ~~al~~~p 197 (265)
.+.-..+|
T Consensus 260 ~qL~~~~p 267 (290)
T PF04733_consen 260 SQLKQSNP 267 (290)
T ss_dssp HHCHHHTT
T ss_pred HHHHHhCC
Confidence 55443333
No 89
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.14 E-value=3.6e-06 Score=59.03 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.|++++|..+|+++.+.+|.++.++..+|.|++++|++++|..++.+++..+|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 378999999999999999999999999999999999999999999999888555
No 90
>KOG2076|consensus
Probab=98.14 E-value=5.2e-05 Score=76.83 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=91.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-CHHHHHHHHH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDK-----DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS-TPMLVNAQVA 174 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~-----~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~-t~~lLn~~A~ 174 (265)
.+.-++..++-..+.+-+.....+- +..+.+..++.++.+. |++.+|..+|-.+....++ +..++..+|.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~----~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI----GKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc----ccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 4445666666666666666665553 3345778888888854 8899999999999999885 6679999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|++.+|++++|...+..++.. |-|+.+.|+.++..+|+++++.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal 503 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Confidence 999999999999999999998 5568899999999999998765
No 91
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.13 E-value=0.00014 Score=73.67 Aligned_cols=143 Identities=10% Similarity=0.043 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TPMLVNA 171 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~~lLn~ 171 (265)
......++..|.+.|+.++|.+.|++|.+. .||.. |..+ .+......|..++|..+|+++.+.++- +...++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~--ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-TFLA--VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-HHHH--HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 334444555566666666666666666552 33332 1111 111112335666666666666655442 3345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccC----------CCCh----hhhcHHHHHHHHHHH
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKGNEMS----------VSPP----FLFRSDETTATLDAC 236 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~~ea~----------p~hp----~~~~~~~~~~~FD~~ 236 (265)
+..++.+.|+++||.+++++.--. +..+...++..+...|+.+.+. |+++ .+.+...+...+|++
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 666666666666666666543221 3334455555555666554322 4432 233334455566665
Q ss_pred Hhhcc
Q psy3174 237 GLQSN 241 (265)
Q Consensus 237 ~~~~~ 241 (265)
..-+.
T Consensus 548 ~~v~~ 552 (697)
T PLN03081 548 AKVVE 552 (697)
T ss_pred HHHHH
Confidence 55443
No 92
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.10 E-value=2.2e-05 Score=73.59 Aligned_cols=84 Identities=11% Similarity=-0.023 Sum_probs=76.0
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC---
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS--- 217 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~--- 217 (265)
..+++.+|...|+++....|.++..+..+|.|++.+|++++|...+.+++++ ++..+.+++.++..+|+..++.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~ 93 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAAL 93 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999999998 6668899999999999988765
Q ss_pred -------CCChhhhcHH
Q psy3174 218 -------VSPPFLFRSD 227 (265)
Q Consensus 218 -------p~hp~~~~~~ 227 (265)
|+++-+....
T Consensus 94 ~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 94 EKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHhCCCCHHHHHHH
Confidence 8888776554
No 93
>PLN03077 Protein ECB2; Provisional
Probab=98.09 E-value=0.00015 Score=74.95 Aligned_cols=67 Identities=18% Similarity=0.195 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHH--HHHHHHHHHHHcCCCCcc
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SED--TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pd--tl~nl~~~~~~~Gk~~ea 216 (265)
|++++|..+|+++ +.+...+|.+...+.+.|+.++|..++.+..+. .|| |...++..+.+.|..+++
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 4455555555544 334455666666677777777777777766554 344 555566666666665543
No 94
>KOG1174|consensus
Probab=98.04 E-value=0.0002 Score=67.60 Aligned_cols=197 Identities=12% Similarity=-0.022 Sum_probs=113.1
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhh---hc---C-ChH-HHHHHHHHHHhcCCCcC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLE---EK---L-PEE-LSCIKVLAEYLSIPSKN 87 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~---ei---~-~~~-l~~~~~~A~~l~~~~~~ 87 (265)
+-.||.|.|.+++..+++....+|.+..--|+|.+-..+ -|.++.+-+ .+ + +.. .-.|.+-..|....-++
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~-eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQ-EGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHh-ccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 678999999999999888888888876566666433222 233432111 11 0 000 00000000111110000
Q ss_pred -------cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 88 -------GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 88 -------e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...-.+.+.+.+.+.+..++.++|+.+|.=.|+.++.+.|-..-+.-.+.--+|+. +++.||.++-.+...
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~--~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ--KRFKEANALANWTIR 396 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh--chHHHHHHHHHHHHH
Confidence 00234788999999999999999999999999999998876654443333333334 678888888777665
Q ss_pred hcCCCHHH------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHH
Q psy3174 161 KYGSTPML------------------------------------VNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLIN 202 (265)
Q Consensus 161 ~~p~t~~l------------------------------------Ln~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~n 202 (265)
.+|.+... .+.+|-.+...|+++.+..+|++.|...|| ....
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~ 476 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNH 476 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHH
Confidence 55544433 344555555555555555555555555333 3334
Q ss_pred HHHHHHHcCCCCc
Q psy3174 203 NMVTAGRLGKGNE 215 (265)
Q Consensus 203 l~~~~~~~Gk~~e 215 (265)
|+-+....+.+.+
T Consensus 477 Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 477 LGDIMRAQNEPQK 489 (564)
T ss_pred HHHHHHHhhhHHH
Confidence 4555555554444
No 95
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=3.4e-05 Score=54.22 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
.+++++|...|+++....|.++.++..+|.++..+|++++|...+.+++.. +++++.+++.++...|+..
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 478999999999999999988889999999999999999999999999987 6668888888888888754
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=98.01 E-value=2.4e-05 Score=65.46 Aligned_cols=102 Identities=10% Similarity=-0.131 Sum_probs=66.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
..+.+|.++..+.-+...||+++|++.|+-..-.++-+.---+++|-+. +-.++|++|...|--..-..+++|.....
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~--Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC--QLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 3567777777777777777777777777776665555542222222221 23366777777777766666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.|.|++++|+.++|...+..+.+.
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 777777777777777777777765
No 97
>KOG0624|consensus
Probab=97.99 E-value=0.00041 Score=64.31 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=120.8
Q ss_pred HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccC
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFG 93 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~ 93 (265)
+++++|-.|+|+.+|..+..+....|...- ...+.+.||++-|+...+|.++ +..+. ...
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~~Wda~-l~~~Rakc~i~~~e~k~AI~Dl--------k~ask-----------Ls~ 220 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQPWDAS-LRQARAKCYIAEGEPKKAIHDL--------KQASK-----------LSQ 220 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcCcchhH-HHHHHHHHHHhcCcHHHHHHHH--------HHHHh-----------ccc
Confidence 568899999999999998777777776531 2233355699999998888743 21111 123
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH------------HHH--------HHHHHH-----------
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ------------LCS--------AWVHIA----------- 142 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~------------la~--------a~v~l~----------- 142 (265)
++.|.++-..+.+...|+...+.+.+++-++++|||-.+- |-. -|....
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 5778888888888888888888888888888888875441 100 121111
Q ss_pred -----------------hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 143 -----------------NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 143 -----------------~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+.+++.||+..-.|+.+..|++...|-..|-+|+.-..|++|...++.|++.+++
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 33466777888888888888888889999999999999999999999999988443
No 98
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.99 E-value=0.00077 Score=59.92 Aligned_cols=168 Identities=9% Similarity=0.093 Sum_probs=115.5
Q ss_pred CcchhHHH-HHhhhhccHHHHHHHHhhcccCChh--hhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCC
Q psy3174 8 EVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPK--VLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIP 84 (265)
Q Consensus 8 ~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~--~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~ 84 (265)
+++++|.. ...|-.|+|.+|++.++++....|. ......++++.+|..+++++.++.. ++ +|+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~--------~e---~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAA--------ID---RFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHH--------HH---HHHHhC
Confidence 45556665 5555559999999998777765543 3445567889999999999877662 22 222211
Q ss_pred CcCcccccCCCHHHHHHHHHHHHHcCC------------------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----
Q psy3174 85 SKNGSSNFGTHLEINALKIHTYLTMYR------------------NDLALKELKVMQDKDEDHTLTQLCSAWVHIA---- 142 (265)
Q Consensus 85 ~~~e~~~~~~~lE~~al~v~~~l~~~r------------------~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---- 142 (265)
.+++...+++++++.++..+++ ...|.+.++++++.-|++.-...|.-++...
T Consensus 100 -----P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 100 -----PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred -----cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 2445667788888877655441 2356677888888888876554443322211
Q ss_pred -----------hccccHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 143 -----------NNVDKLNEAFYTLQDLIDKYGSTP---MLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 143 -----------~g~~~~~eA~~~~~el~~~~p~t~---~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
...|+|.-|..-|+.+.+.+|.|+ ..|..+..++..+|..++|.....-
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 223788899999999999999754 4788888999999999999887643
No 99
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.98 E-value=1e-05 Score=58.36 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHHH-------hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 146 DKLNEAFYTLQDLI-------DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 146 ~~~~eA~~~~~el~-------~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
|++++|...|++.. +.+|.+...++++|.|+..+|++++|+.+++++++
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555543 22344566899999999999999999999999986
No 100
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.97 E-value=0.00026 Score=60.99 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=101.2
Q ss_pred CcchhHHH-HHhhhhccHHHHHHHHhhcccCCh--hhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCC
Q psy3174 8 EVDELFDV-RNSYYLGNYQQCIKEGQRLKATDP--KVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIP 84 (265)
Q Consensus 8 ~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~--~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~ 84 (265)
+++++|.. ...|-.|+|.+|++.++++....| ....+..++++.++...|++..++.. +-+|+..-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~-----------~~~fi~~y 72 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAA-----------YERFIKLY 72 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHH-----------HHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-----------HHHHHHHC
Confidence 34556666 889999999999999887775433 23566788889999999999876662 22222211
Q ss_pred CcCcccccCCCHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHccCCCcHHHHHHHH------------HHHH
Q psy3174 85 SKNGSSNFGTHLEINALKIHTYLTMYR-----------NDLALKELKVMQDKDEDHTLTQLCSA------------WVHI 141 (265)
Q Consensus 85 ~~~e~~~~~~~lE~~al~v~~~l~~~r-----------~d~Aek~l~~~~~~~~d~~l~~la~a------------~v~l 141 (265)
.+++...++++++++++..+.+ ...|...++.+++.-|++.-+..|.- -+.+
T Consensus 73 -----P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 73 -----PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp -----TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334556788888888766532 33677777777777776644322211 1111
Q ss_pred H---hccccHHHHHHHHHHHHhhcCCCHH---HHHHHHHHHHHcCCHHHHH
Q psy3174 142 A---NNVDKLNEAFYTLQDLIDKYGSTPM---LVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 142 ~---~g~~~~~eA~~~~~el~~~~p~t~~---lLn~~A~~~~~~g~~eEAe 186 (265)
+ ...+++..|..-|+.+.+.+|+|+. .|..++.++.++|....|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1 2336777888888888888887655 5667777777777777543
No 101
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=0.00015 Score=71.22 Aligned_cols=125 Identities=12% Similarity=0.064 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHhh
Q psy3174 93 GTHLEINALKIHTYLTMYR-----NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV------DKLNEAFYTLQDLIDK 161 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r-----~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~------~~~~eA~~~~~el~~~ 161 (265)
+.++++.-+..+....+++ +..|...|+++++.+|+.....-..+|....... ++...+....++....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 6777776554444444443 6799999999999999998766655565544221 2344555555554443
Q ss_pred --cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCccC
Q psy3174 162 --YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 162 --~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ea~ 217 (265)
.|.++.++..+|..+..+|++++|...+++|++++|. ....++.++...|++.++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5667788888999999999999999999999999554 5678899999999988764
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=7e-05 Score=52.55 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhcC
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD-KLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~-~~~eA~~~~~el~~~~p 163 (265)
++.+.....+.++..+|+++.|.+.|+++++.+|++.......+.+.... + ++.+|+..|++..+..|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~--~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL--GKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHcCc
Confidence 35788999999999999999999999999999999986655555554444 5 79999999999988776
No 103
>PLN03077 Protein ECB2; Provisional
Probab=97.95 E-value=0.00085 Score=69.47 Aligned_cols=188 Identities=14% Similarity=0.111 Sum_probs=110.6
Q ss_pred hhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-------CChHHHHHHHHHHHhcCCCcCcc---
Q psy3174 20 YLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-------LPEELSCIKVLAEYLSIPSKNGS--- 89 (265)
Q Consensus 20 y~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-------~~~~l~~~~~~A~~l~~~~~~e~--- 89 (265)
-.|.+..|...++++...+.. .-.-+..+|...|+++.++.-+ -.|....+..+...+...+..+.
T Consensus 335 k~g~~~~A~~vf~~m~~~d~~----s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 335 SLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred hcCCHHHHHHHHhhCCCCCee----eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 457777777766555432211 1122346677777776554332 12332222222222222222111
Q ss_pred -------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 90 -------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 90 -------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
.....+......++..|.+.|+++.|.+.|++|.+.+.. +-+.+..++. ..+++.+|+.+|+++....
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v-s~~~mi~~~~----~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI-SWTSIIAGLR----LNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee-eHHHHHHHHH----HCCCHHHHHHHHHHHHhCC
Confidence 112345566667788999999999999999998653221 1111222222 3478899999999987553
Q ss_pred CCCHH-----------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy3174 163 GSTPM-----------------------------------LVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTA 207 (265)
Q Consensus 163 p~t~~-----------------------------------lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~ 207 (265)
+.+.. +.|.+-..|.+.|++++|...+.+. ..+..+...+|..+
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 32222 2234446778889999999888877 44777888899999
Q ss_pred HHcCCCCccC
Q psy3174 208 GRLGKGNEMS 217 (265)
Q Consensus 208 ~~~Gk~~ea~ 217 (265)
...|+..++.
T Consensus 565 ~~~G~~~~A~ 574 (857)
T PLN03077 565 VAHGKGSMAV 574 (857)
T ss_pred HHcCCHHHHH
Confidence 9999987765
No 104
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=1.1e-05 Score=59.28 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGS--TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~--t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++++++|..+|+++.+..|. ....+..+|.|++++|+|++|..++++ .+. +++...-++.|+..+|+.+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 37899999999999999995 345666799999999999999999988 544 667788889999999997654
No 105
>PRK15331 chaperone protein SicA; Provisional
Probab=97.91 E-value=0.00026 Score=59.23 Aligned_cols=106 Identities=15% Similarity=0.009 Sum_probs=85.9
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---
Q psy3174 119 LKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--- 195 (265)
Q Consensus 119 l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--- 195 (265)
++.+..+.++..-..-+.|+--.-. |++++|..+|+=+.-..|+.+.-+.++|.|+..+|+|++|...+-.|...
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~--Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~ 103 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQ--GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN 103 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 4555555555443333345553334 89999999999999999999999999999999999999999999999876
Q ss_pred CHHHHHHHHHHHHHcCCCCccC---------CCChhhhcH
Q psy3174 196 SEDTLINNMVTAGRLGKGNEMS---------VSPPFLFRS 226 (265)
Q Consensus 196 ~pdtl~nl~~~~~~~Gk~~ea~---------p~hp~~~~~ 226 (265)
||-..++.+-|+..+|+...+. |.|+.++.-
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~ 143 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAK 143 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHH
Confidence 8889999999999999998765 777777664
No 106
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.90 E-value=0.00078 Score=58.00 Aligned_cols=154 Identities=13% Similarity=0.093 Sum_probs=106.3
Q ss_pred HHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 45 KDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 45 ~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
..+-.+...+..|++..++.. +..+..-. ...+-..++.+.++.++...|+++.|...+++.++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~--------f~~l~~~~--------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKL--------FEKLIDRY--------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHH--------HHHHHHH---------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHH--------HHHHHHHC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455567888899998877662 22222110 12234567889999999999999999999999999
Q ss_pred cCCCcHHH-----HHHHHHHHHHhc-------cccHHHHHHHHHHHHhhcCCCHHHH-----------------HHHHHH
Q psy3174 125 KDEDHTLT-----QLCSAWVHIANN-------VDKLNEAFYTLQDLIDKYGSTPMLV-----------------NAQVAV 175 (265)
Q Consensus 125 ~~~d~~l~-----~la~a~v~l~~g-------~~~~~eA~~~~~el~~~~p~t~~lL-----------------n~~A~~ 175 (265)
..|+|... .++.++.....+ ++...+|+..|+++..++|+|+..- ...|.-
T Consensus 71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877544 344444433322 2557799999999999999875431 346788
Q ss_pred HHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCC
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ 214 (265)
++..|+|..|..-++.+++. .++.+.-++..+..+|...
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 99999999999999999987 4457788899999998753
No 107
>KOG4162|consensus
Probab=97.90 E-value=0.00075 Score=67.70 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
++..+++-.+.+.+..|.|.-.+.++..+++-.+=..--.+.... ..|+..||+..|.......|+.+.++.++|-|+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~--~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE--VKGQLEEAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH--HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 445566777777777777777777777777655422211222222 336677888888887777787777777788888
Q ss_pred HHcCCHHHHHH--HHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 177 IAQDKYEEAWD--LLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 177 ~~~g~~eEAe~--~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++.|+-.-|+. ++.+++.. +|+.+.+++.+...+|....+
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 88777666666 77777777 777777888888888776543
No 108
>KOG0553|consensus
Probab=97.90 E-value=0.00018 Score=65.28 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=93.5
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY 182 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~ 182 (265)
-+.+.++|.+|...|.++++++|.+.+. +-|.||..| |.+..|..--+......|.....+--+|.++..+|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L----g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL----GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh----cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 4566789999999999999999988765 777788876 5599999999999999999889999999999999999
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCc
Q psy3174 183 EEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 183 eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~e 215 (265)
++|++.+++||+++|+ .-.||-++-..++.+.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~ 201 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKS 201 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999554 66799888888888763
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.89 E-value=0.00016 Score=74.67 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=98.0
Q ss_pred ccc-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-------
Q psy3174 90 SNF-GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK------- 161 (265)
Q Consensus 90 ~~~-~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~------- 161 (265)
+++ |.+.+.+-.++.+|...|++|.|.+.....++..|+++...+.++++.+.. ++++++-.+ .+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~--~~~~~~~lv--~~l~~~~~~~~~ 99 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR--RPLNDSNLL--NLIDSFSQNLKW 99 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh--cchhhhhhh--hhhhhcccccch
Confidence 454 789999999999999999999999999999999999998888888876654 334444443 33333
Q ss_pred ------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 162 ------------YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 162 ------------~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+|.+..+|.++|.||-++|++++|..+++++++. ||.+|-|++..+... +.+.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 4444478999999999999999999999999998 777999999988888 54443
No 110
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.00012 Score=60.81 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=59.1
Q ss_pred cccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
.+++++|...|+++....|+ .+.+++++|.++..+|++++|...+++++.. +++++.|++.++..+|+
T Consensus 48 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 48 EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 37899999999999877665 4458999999999999999999999999988 66688899999996664
No 111
>KOG0550|consensus
Probab=97.87 E-value=0.00018 Score=67.79 Aligned_cols=199 Identities=14% Similarity=0.076 Sum_probs=135.2
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhc-CChHHHHHHHHHHHhcCC-------CcCcc-------------------cccCC
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEK-LPEELSCIKVLAEYLSIP-------SKNGS-------------------SNFGT 94 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei-~~~~l~~~~~~A~~l~~~-------~~~e~-------------------~~~~~ 94 (265)
......+.+.|+.-+|.++.++++. ..-.+.+....|.|+... ..... -..++
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 3455666778888888888766654 222233344444443321 11100 01277
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
-+|..-..+--..+.|++..|...|..++.+||+++-++ +.-|.|.+ ..-||..||+.--.+.....|.-+..|.-
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n-aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN-AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh-HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence 788888888899999999999999999999999976442 22233333 12288999999999999998888888889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC--CHH---HHHHHHHHHHHcCCCC---------cc-------------CCCChhhh
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD--SED---TLINNMVTAGRLGKGN---------EM-------------SVSPPFLF 224 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~--~pd---tl~nl~~~~~~~Gk~~---------ea-------------~p~hp~~~ 224 (265)
.|.||+.+++|++|.+.+++|++. +++ +|.+...-+....+.+ .+ +-.||..-
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ 406 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC
Confidence 999999999999999999999987 433 5655554444332221 11 04555544
Q ss_pred cH--HHHHHHHHHHHhhcc
Q psy3174 225 RS--DETTATLDACGLQSN 241 (265)
Q Consensus 225 ~~--~~~~~~FD~~~~~~~ 241 (265)
.- .+-+..|-++.+-|.
T Consensus 407 agsq~eaE~kFkevgeAy~ 425 (486)
T KOG0550|consen 407 AGSQKEAEAKFKEVGEAYT 425 (486)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 33 456777888887775
No 112
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.87 E-value=0.00042 Score=57.80 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=62.6
Q ss_pred ccccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
..|++++|...|+++....|+ ....+..+|.++..+|++++|...+.++++. ++..+.+++.++..+|+...+
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhH
Confidence 338899999999999877664 3468999999999999999999999999998 566788999999999986543
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.80 E-value=8.7e-05 Score=51.83 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=55.6
Q ss_pred HHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 106 YLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 106 ~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
++..|+++.|.+.|+++++.+|++.-..+..+.+.+.. |++++|..+++++....|+++.....+|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ--GQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT--T-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 46789999999999999999999988777777776666 7899999999999999998776665544
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.00091 Score=64.15 Aligned_cols=107 Identities=16% Similarity=0.013 Sum_probs=94.6
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.+.|+|+=..-+++.+++..||..+|.+.+++++..+|+..+..+..+-..+.. |++++|..+.++..-..|++|..+
T Consensus 334 ~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~--g~~~eai~~L~~~~~~~p~dp~~w 411 (484)
T COG4783 334 AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG--GKPQEAIRILNRYLFNDPEDPNGW 411 (484)
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc--CChHHHHHHHHHHhhcCCCCchHH
Confidence 356999999999999999999999999999999999999987766655554434 789999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC--CHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD--SED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~--~pd 198 (265)
+.+|-++-.+|+-.+|....-+.+.. +.+
T Consensus 412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~ 442 (484)
T COG4783 412 DLLAQAYAELGNRAEALLARAEGYALAGRLE 442 (484)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999988888776 444
No 115
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.78 E-value=0.00014 Score=65.43 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=65.7
Q ss_pred cccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~e 215 (265)
.++|++|+..|+++...||++ +..+..+|.++..+|+|++|...++++++. .||.+..++.++..+|+..+
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 478999999999999999976 568999999999999999999999999976 57799999999999998776
Q ss_pred cC
Q psy3174 216 MS 217 (265)
Q Consensus 216 a~ 217 (265)
+.
T Consensus 236 A~ 237 (263)
T PRK10803 236 AK 237 (263)
T ss_pred HH
Confidence 43
No 116
>KOG3785|consensus
Probab=97.78 E-value=0.00032 Score=65.25 Aligned_cols=201 Identities=12% Similarity=0.062 Sum_probs=120.7
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---CChHH--HHHHHHHHHhcCCCc
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---LPEEL--SCIKVLAEYLSIPSK 86 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---~~~~l--~~~~~~A~~l~~~~~ 86 (265)
|.-...+|.+|+|++|++....+.. +++..-+..++.+=++-=+|+|..+-+-. +..+| +.+-.+|-=+...++
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~-~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMN-KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhc-cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 4455778999999999998644433 22223355677777777788886443322 22222 222223322222111
Q ss_pred Ccc--cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 87 NGS--SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 87 ~e~--~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
--. ....+++|-...++.+...--.+.+|...|++++.-+++-.-.+ +|+.|..+ +=|+=+..+..-..+.+
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl----DYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKL----DYYDVSQEVLKVYLRQF 215 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc----chhhhHHHHHHHHHHhC
Confidence 100 33467778777777776666678899999999888666654433 33333333 44666666777777889
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHH----------------HHHHH----------HhcC-------CHHHHHHHHHHH
Q psy3174 163 GSTPMLVNAQVAVLIAQ--DKYEEAW----------------DLLQD----------TAGD-------SEDTLINNMVTA 207 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~--g~~eEAe----------------~~l~~----------al~~-------~pdtl~nl~~~~ 207 (265)
|+++...|.+|+.+.+. ||..|++ .+.+- |++. =|+.-.||+..+
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 99888888888888775 4443333 22221 1111 466667888888
Q ss_pred HHcCCCCccC
Q psy3174 208 GRLGKGNEMS 217 (265)
Q Consensus 208 ~~~Gk~~ea~ 217 (265)
..+|.-.|+.
T Consensus 296 L~q~dVqeA~ 305 (557)
T KOG3785|consen 296 LNQNDVQEAI 305 (557)
T ss_pred cccccHHHHH
Confidence 7787776665
No 117
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.78 E-value=9.8e-06 Score=58.48 Aligned_cols=54 Identities=28% Similarity=0.185 Sum_probs=45.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-------CHH---HHHHHHHHHHHcCCCCc
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-------SED---TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-------~pd---tl~nl~~~~~~~Gk~~e 215 (265)
||++..+++++|.++..+|+|++|..+++++++. +|+ ++.|++.|+..+|+.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 64 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEE 64 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 5777889999999999999999999999999976 444 56799999999998654
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.77 E-value=0.0013 Score=68.25 Aligned_cols=131 Identities=11% Similarity=-0.006 Sum_probs=98.1
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH----------
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI---------- 159 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~---------- 159 (265)
+.++.+-.+++.++.||-+||+.++|...|.++++++|+++.+..-.||.. +.. ++++|..++.++.
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~-ae~--dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY-EEE--DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHh--hHHHHHHHHHHHHHHHHhhhcch
Confidence 345777789999999999999999999999999999999987766666663 332 6788887777753
Q ss_pred ----------hhcCC--CH------HHHHHHH------------HHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHH
Q psy3174 160 ----------DKYGS--TP------MLVNAQV------------AVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVT 206 (265)
Q Consensus 160 ----------~~~p~--t~------~lLn~~A------------~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~ 206 (265)
...|+ +. .++-..+ .+|-...+|+++..+|+.+|+.+|. .+..++.|
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~ 266 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF 266 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 33343 22 2233334 7888999999999999999999444 67788877
Q ss_pred HHHcCCCCccCCCChhhhcHHHH
Q psy3174 207 AGRLGKGNEMSVSPPFLFRSDET 229 (265)
Q Consensus 207 ~~~~Gk~~ea~p~hp~~~~~~~~ 229 (265)
+. |+. ++||...++..+
T Consensus 267 y~--~kY----~~~~~~ee~l~~ 283 (906)
T PRK14720 267 YK--EKY----KDHSLLEDYLKM 283 (906)
T ss_pred HH--HHc----cCcchHHHHHHH
Confidence 76 443 567777777663
No 119
>KOG3060|consensus
Probab=97.75 E-value=0.00092 Score=59.59 Aligned_cols=123 Identities=14% Similarity=0.079 Sum_probs=106.2
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
+++|+|.-..-+.++.+..+|+++.|.+.|...++-||-++.+.-- -+.+...+|+..+|+.-..+..+.|+.++.++
T Consensus 80 ~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR--KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW 157 (289)
T KOG3060|consen 80 DRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR--KLAILKAQGKNLEAIKELNEYLDKFMNDQEAW 157 (289)
T ss_pred HhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH--HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHH
Confidence 5679999999999999999999999999999999988888876542 33444555788899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
.-+|-+|+..|.|+.|.=++++.+=. +|-...-++-+...+|..+
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999876 6667778888888888743
No 120
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.75 E-value=0.0045 Score=60.94 Aligned_cols=51 Identities=10% Similarity=-0.009 Sum_probs=32.2
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHh
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVL 63 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l 63 (265)
||.+.=..=.|.|++|++..++....-.|. +......++.++.+|+++.+.
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk-~~~~E~rA~ll~kLg~~~eA~ 58 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDK-LAVLEKRAELLLKLGRKEEAE 58 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCH-HHHHHHHHHHHHHcCCHHHHH
Confidence 555555556799999999875444333332 223444578899999987543
No 121
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.74 E-value=0.00053 Score=56.11 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDED---HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PM 167 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d---~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~ 167 (265)
.+.+-++..++-.+..|+++.|.+.|+.+..--|- ..-++|.+++..... +++.+|...+++....||.+ +.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCCCccH
Confidence 46778899999999999999999999999886554 455567777776666 77999999999999988854 44
Q ss_pred HHHHHHHHHHHcCC---------------HHHHHHHHHHHhcCCH
Q psy3174 168 LVNAQVAVLIAQDK---------------YEEAWDLLQDTAGDSE 197 (265)
Q Consensus 168 lLn~~A~~~~~~g~---------------~eEAe~~l~~al~~~p 197 (265)
.+...|.+++.+.. ..+|...+++.+...|
T Consensus 86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 78888999998877 5556666555555433
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.74 E-value=0.00043 Score=65.84 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
...+|..++++++++.+|+-.+|.+.+.++++..|.+.......+-.-+.. ++++.|..+.+++....|+....+..+
T Consensus 197 ~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k--~~~~lAL~iAk~av~lsP~~f~~W~~L 274 (395)
T PF09295_consen 197 ERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK--KKYELALEIAKKAVELSPSEFETWYQL 274 (395)
T ss_pred hcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 456889999999999999999999999999998887765555555554444 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~ 190 (265)
|.||+++|+|++|.-.+.
T Consensus 275 a~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 275 AECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhcCCHHHHHHHHh
Confidence 999999999999987765
No 123
>KOG4162|consensus
Probab=97.72 E-value=0.0016 Score=65.34 Aligned_cols=205 Identities=18% Similarity=0.107 Sum_probs=141.1
Q ss_pred ccCChhhhhhHHHHHHHHHHcccChhHHhhhc-------CChHHHHHHHHHHHhcCCCcCcc---------cccCCCHHH
Q psy3174 35 KATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-------LPEELSCIKVLAEYLSIPSKNGS---------SNFGTHLEI 98 (265)
Q Consensus 35 ~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-------~~~~l~~~~~~A~~l~~~~~~e~---------~~~~~~lE~ 98 (265)
...+|+. .+|..-=|.-+++.+.++.-+ ....+.++.++|-.++..++-.. ..+++|.-+
T Consensus 474 d~~dp~~----if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 474 DPTDPLV----IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred CCCCchH----HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 4455543 444444455566655444333 22236678888888876655322 345777777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHc------------------------------------------------------
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQD------------------------------------------------------ 124 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~------------------------------------------------------ 124 (265)
+...+++-+..|+..+|......++.
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 77777777777777766665554443
Q ss_pred ----------cCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 125 ----------KDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 125 ----------~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
.++|++-..+-.-|+..+ .-.+..++|..-..|+...+|-.+..++..|.++..+|.++||...+..
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 134444444444455444 2336788899899999999999999999999999999999999999999
Q ss_pred HhcCCHH---HHHHHHHHHHHcCCCCccC------------CCCh----hhhcHHHHHHHHHHHHhhcccc
Q psy3174 192 TAGDSED---TLINNMVTAGRLGKGNEMS------------VSPP----FLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 192 al~~~pd---tl~nl~~~~~~~Gk~~ea~------------p~hp----~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
|+..||+ .+..++.++...|.+.-+. |.+| .+-....+...|++.++-|...
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999555 8889999999999764321 7776 3445577888899998888754
No 124
>KOG2796|consensus
Probab=97.71 E-value=0.0018 Score=58.33 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=92.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc----cCC--CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQD----KDE--DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~----~~~--d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~ 166 (265)
+..+-++.-++.+..+.|+...|++.+..+-+ ++. ...+.-.+.+.+.+ |+.++-+|+..|.++....|.++
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l--g~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL--GQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee--cccchHHHHHHHhhccccCCCch
Confidence 45677888888899999999999999985533 322 34444455555554 66899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGR 209 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~ 209 (265)
..-|+.|.|++-.|+.-.|.+.++.+.++ +..+++||-+.+..
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999998 44466777665543
No 125
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.70 E-value=0.00022 Score=50.44 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=44.0
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
..+++++|...++.+...+|.++..+...|.|+..+|+|.+|...+.++++.+|
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 347788888888888888888888888888888888888888888888887743
No 126
>KOG1173|consensus
Probab=97.70 E-value=0.00015 Score=70.43 Aligned_cols=149 Identities=15% Similarity=0.064 Sum_probs=118.7
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---------------------------
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA--------------------------- 142 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~--------------------------- 142 (265)
+.+|..+=.++..+.-|+.+|++++|++-+.++..+|+--- .||++++
T Consensus 306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-----paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h 380 (611)
T KOG1173|consen 306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-----PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH 380 (611)
T ss_pred HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc-----HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc
Confidence 45799888899989999999999999999999988766322 2333322
Q ss_pred ---------hc-cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CHH------HHHH
Q psy3174 143 ---------NN-VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----SED------TLIN 202 (265)
Q Consensus 143 ---------~g-~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----~pd------tl~n 202 (265)
-+ .++++-|..+|.++....|.+|.++|-+|++....+.|++|..+++.+++. .++ ++.|
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 11 266788999999999999999999999999999999999999999999965 444 4789
Q ss_pred HHHHHHHcCCCCccC----------CCChh----hhcHHHHHHHHHHHHhhcccc
Q psy3174 203 NMVTAGRLGKGNEMS----------VSPPF----LFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~----------p~hp~----~~~~~~~~~~FD~~~~~~~~~ 243 (265)
|+-++..+++..+++ |..+- +--.-.+...||.++.-|.-+
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 999999999998876 54443 333455778888888887744
No 127
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.66 E-value=0.0047 Score=58.02 Aligned_cols=230 Identities=15% Similarity=0.118 Sum_probs=139.6
Q ss_pred hhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChh---HHhhhc----CChHHHHHHHHHHHhcCCCcCcc-
Q psy3174 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK---VVLEEK----LPEELSCIKVLAEYLSIPSKNGS- 89 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~---~~l~ei----~~~~l~~~~~~A~~l~~~~~~e~- 89 (265)
.++-|+|++|...+.+-..-. +...-..+..+|+-=..|+++ .-+.++ .++.+...-.-++.+-..++...
T Consensus 94 ~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 94 KLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred HHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 356799999998864422222 222222333355555555554 233444 23334334445555555544332
Q ss_pred --------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHhccccHHHHHH---HH
Q psy3174 90 --------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK---DEDHTLTQLCSAWVHIANNVDKLNEAFY---TL 155 (265)
Q Consensus 90 --------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d~~l~~la~a~v~l~~g~~~~~eA~~---~~ 155 (265)
+..|.+++.+-+..++|...|++...-+++.++.+. .+.+..-.--.+|.++-.....-+.+.- ..
T Consensus 173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 456999999999999999999999999999999773 3334433444588877743322222332 33
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCccC----------CCChhh
Q psy3174 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEMS----------VSPPFL 223 (265)
Q Consensus 156 ~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~ 223 (265)
+++.++--.+|.+..+.|.=+++.|..++|.+++.+++.+ ||. |.-++-+... |++..-. |+.|.+
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l~~-~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRLRP-GDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhcCC-CCchHHHHHHHHHHHhCCCChhH
Confidence 3333333356888899999999999999999999999998 666 4333332221 1111100 777744
Q ss_pred hcH----HHHHHHHHHHHhhccccCCCCCcc
Q psy3174 224 FRS----DETTATLDACGLQSNSESTPRDSG 250 (265)
Q Consensus 224 ~~~----~~~~~~FD~~~~~~~~~~~~l~~~ 250 (265)
... .-+++.|-+...-|..++...+|+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 433 336777777766666655555554
No 128
>PRK11906 transcriptional regulator; Provisional
Probab=97.65 E-value=0.002 Score=61.81 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=119.7
Q ss_pred HHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHc---C------ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHh
Q psy3174 73 CIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTM---Y------RNDLALKELKVMQDKDEDHTLTQLCSAWVHIAN 143 (265)
Q Consensus 73 ~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~---~------r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~ 143 (265)
++.++-+.+++. ...|+..++++.++.|+... | ...+|...-+++.++|++++.+.-.++.+....
T Consensus 277 Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 277 AMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 455555544332 23467778888888888764 2 245677788889999999998888888876666
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH----HHHHHHH-HHHHcCCCCccC-
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED----TLINNMV-TAGRLGKGNEMS- 217 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd----tl~nl~~-~~~~~Gk~~ea~- 217 (265)
| +++.|...|++.....|+++..+...|+++..-|+.++|...+++++.++|- .+.-+.+ .+.+.+-+. ++
T Consensus 352 ~--~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~-~~~ 428 (458)
T PRK11906 352 G--QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKN-NIK 428 (458)
T ss_pred c--chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhh-hHH
Confidence 4 4999999999999999999999999999999999999999999999999777 2334444 444444332 22
Q ss_pred --------CCChhhhcHHHHHHHHHHHHh
Q psy3174 218 --------VSPPFLFRSDETTATLDACGL 238 (265)
Q Consensus 218 --------p~hp~~~~~~~~~~~FD~~~~ 238 (265)
..|..+.+..-|.+..-|++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (458)
T PRK11906 429 LYYKETESESHRVIIDNILKLKQLTRICM 457 (458)
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHhc
Confidence 778888888878777777764
No 129
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.65 E-value=0.00071 Score=60.15 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcCCC---HHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYGST---PMLV 169 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p~t---~~lL 169 (265)
.+.+-.+..+..+...|+++.|.+.|++++...|++..+..+.-|+..+ ...+++++|...|++....+|.+ +..+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 5788899999999999999999999999999999998887555444333 23488999999999999999954 4478
Q ss_pred HHHHHHHHHcCC------------------HHHHHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDK------------------YEEAWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~------------------~eEAe~~l~~al~~~pd 198 (265)
..+|.|++.+++ ..+|...+++.++..|+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence 889988877652 25677888888887555
No 130
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.0027 Score=58.50 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS-TPMLVNAQVAVLI 177 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~-t~~lLn~~A~~~~ 177 (265)
..-++|.++.-+++|.|...++++++.+|..+=+.+.++-|.+.. |+|+.|...++.+.+..|+ .+.++..+..||.
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~--g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK--GDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc--cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 456677777788888888888888888888887777788777766 6788888888888888886 6668888888888
Q ss_pred HcCCHHHHHHHHHHHhcC
Q psy3174 178 AQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~ 195 (265)
++|+.++.+..|.++.+.
T Consensus 261 ~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 261 QLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhCCHHHHHHHHHHHHHc
Confidence 888888888888888876
No 131
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.64 E-value=0.001 Score=57.06 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHc---cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQD---KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TPML 168 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~---~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~~l 168 (265)
.+....+.++-.+...||+.+|+..|.+++. .++...+.-+|.+-+.+ ++.-+|....+++.+.+|. +|..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~----~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI----QEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh----ccHHHHHHHHHHHhhcCCccCCCCc
Confidence 4556678888899999999999999999987 34455666666666533 7799999999999999884 6776
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ea 216 (265)
....|-++..+|+++.|+..++.+++- .|..-+-.++....+|+..++
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHH
Confidence 667788999999999999999999998 777778888999999987653
No 132
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.0057 Score=56.40 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
+++=-+..||-.......|...-.+...++++.--..+|.-|..++ ...++.+.|...+.+..+..|...-.-..+|
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 3444556678788888888888888888888888788888887777 3447888999999999999997666555788
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCHH----HHHHHHHHHHHcCCCCcc
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGDSED----TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~~pd----tl~nl~~~~~~~Gk~~ea 216 (265)
.+++++|+|+.|.+.++.+++.||+ ++--|..|+.++|++.+-
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999999999999888 456889999999999764
No 133
>PLN02789 farnesyltranstransferase
Probab=97.59 E-value=0.0019 Score=59.74 Aligned_cols=119 Identities=7% Similarity=0.013 Sum_probs=97.3
Q ss_pred cCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMY-RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~-r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.|++..+...+..++..+| ++++|...+.++++.+|++.-+-.--+|+--..|...++++..+++++.+..|.+..+++
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence 4667788888888999998 579999999999999999983322223332223322347889999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
..++++..+|+|++|.+...++++. |.....+.+.+..++
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999997 777888888888776
No 134
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.58 E-value=0.0029 Score=62.27 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 44 EKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 44 e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
|..+|....+...|+++.+++.+ ... .....+.+..+=.++.+|+++||.++|++.|+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L---------------~~~----~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHL---------------EKN----EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH---------------Hhh----hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777888999998877732 110 12345667777778889999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHH-HHh--ccccHHHHHHHHHHHHh----------------------------------------
Q psy3174 124 DKDEDHTLTQLCSAWVH-IAN--NVDKLNEAFYTLQDLID---------------------------------------- 160 (265)
Q Consensus 124 ~~~~d~~l~~la~a~v~-l~~--g~~~~~eA~~~~~el~~---------------------------------------- 160 (265)
+.+||+....-...-.. +.. ..+..+.-..+|+++..
T Consensus 66 ~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl 145 (517)
T PF12569_consen 66 DRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL 145 (517)
T ss_pred HHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH
Confidence 99998874432221110 000 11234444555555311
Q ss_pred -----------------------------------------hcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--
Q psy3174 161 -----------------------------------------KYGSTP--MLVNAQVAVLIAQDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 161 -----------------------------------------~~p~t~--~lLn~~A~~~~~~g~~eEAe~~l~~al~~-- 195 (265)
..|.+. .++.-+|-.|...|++++|..++.+|++.
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP 225 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP 225 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 012222 35678899999999999999999999998
Q ss_pred -CHHHHHHHHHHHHHcCCCCccC
Q psy3174 196 -SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 -~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
-||..+..+.++-|.|+..++.
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHH
Confidence 6778899999999999987654
No 135
>KOG0553|consensus
Probab=97.56 E-value=0.00033 Score=63.56 Aligned_cols=83 Identities=13% Similarity=0.013 Sum_probs=76.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC-----
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS----- 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~----- 217 (265)
++|++|+..|.++....|.++..+-+.|.+|+++|.|+.|....+.|+.+||. ++.-|+.++..+||..++.
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK 174 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK 174 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999887 7789999999999998754
Q ss_pred -----CCChhhhcHHH
Q psy3174 218 -----VSPPFLFRSDE 228 (265)
Q Consensus 218 -----p~hp~~~~~~~ 228 (265)
|+++..+..+.
T Consensus 175 aLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 175 ALELDPDNESYKSNLK 190 (304)
T ss_pred hhccCCCcHHHHHHHH
Confidence 99997776654
No 136
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.53 E-value=0.00079 Score=47.56 Aligned_cols=66 Identities=20% Similarity=0.140 Sum_probs=57.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.++|+..++++.|.+.+.++++++|+++......|.+.... |++++|...|+.+.+..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQL--GRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 46899999999999999999999999987776666666656 7899999999999999998776554
No 137
>KOG2003|consensus
Probab=97.50 E-value=0.005 Score=59.08 Aligned_cols=187 Identities=12% Similarity=0.048 Sum_probs=123.5
Q ss_pred HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CC--hHHHHHHHHH-HHhcCCCcC-cccc--
Q psy3174 24 YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LP--EELSCIKVLA-EYLSIPSKN-GSSN-- 91 (265)
Q Consensus 24 Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~--~~l~~~~~~A-~~l~~~~~~-e~~~-- 91 (265)
|.=|++..+ .+.--+...+.++-.+--|+.+|+++.+++-+ .+ ....+-.+-+ .|+....+- .+..
T Consensus 402 ~dwcle~lk--~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 402 CDWCLESLK--ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cHHHHHHHH--HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 445555431 11222334455566667799999988555433 11 1122222222 334332221 1111
Q ss_pred ------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhc
Q psy3174 92 ------FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 92 ------~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~ 162 (265)
-.-++-++...+-+....|++|.|..-|++++..|---+ ++..|+. ...+++++|+..|-++...-
T Consensus 480 d~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-----ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 480 DIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-----EALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-----HHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 134555566666788889999999999999966433222 3333333 33488999999999887766
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
-.+..+|..+|.+|-.+.+...|.+++.++-.. +|.+|.-|+-++..-|....++
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 677888889999999999999999999999887 9999999999999999887765
No 138
>KOG2076|consensus
Probab=97.50 E-value=0.0032 Score=64.22 Aligned_cols=115 Identities=6% Similarity=-0.082 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+.-.+-.+...||++.|++++.+++..+|-+...--.++-|. ...|+.+++.+..--+....|.+...+.-+|....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~Iy--EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIY--EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHH--HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 333344455567777777777777777776663321111111 123566666666666666666666666666666667
Q ss_pred cCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCc
Q psy3174 179 QDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~e 215 (265)
+|+|..|.-++.+|++.+|+ .+.+-+.++..+|+...
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~ 259 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR 259 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence 77777777777777666444 55566666666666544
No 139
>KOG1155|consensus
Probab=97.50 E-value=0.0055 Score=58.78 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-------cC
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED--HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK-------YG 163 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d--~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~-------~p 163 (265)
|.+.-++-.+++||.++||.++|+|.|+++...++- +.+..||..+=++ +.+++|.++|++..+. .|
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l----~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL----KDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHhhcccch
Confidence 778888889999999999999999999999998876 5555666655544 5688999999987653 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.|..+..-+|.=+.+.++|++|..+..+++.-++
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 4677777788889999999999998888877533
No 140
>KOG0550|consensus
Probab=97.49 E-value=0.00038 Score=65.67 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHH-------HHHHHHHH---hccccHHHHHHHHHHHHhhc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQL-------CSAWVHIA---NNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~l-------a~a~v~l~---~g~~~~~eA~~~~~el~~~~ 162 (265)
+.+.|.+++++.++...+..|.|...+.+.+.++||+.-.-. .+.|-.-. -..|+|.+|+..|-+.....
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 789999999999999999999999999999999999865422 22333211 23389999999999999999
Q ss_pred CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHH---HHHHHHHHHcCCCCccC
Q psy3174 163 GS----TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTL---INNMVTAGRLGKGNEMS 217 (265)
Q Consensus 163 p~----t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl---~nl~~~~~~~Gk~~ea~ 217 (265)
|+ ...++-+.|.+.+++||..||...-.+|+++||..+ .--+.|...++++.++.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 344788999999999999999999999999988854 34477888889887654
No 141
>PLN02789 farnesyltranstransferase
Probab=97.47 E-value=0.0022 Score=59.36 Aligned_cols=119 Identities=9% Similarity=-0.011 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----hccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
+-.+.+-..--++...++.+.|...+.++++++|++. .+|.+.. .-+..+++++..++++.+..|.+..++
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y-----taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW 109 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNY-----TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW 109 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH-----HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence 4445554555567788999999999999999999998 4554332 222368999999999999999999999
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 170 NAQVAVLIAQDKY--EEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 170 n~~A~~~~~~g~~--eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+..+++..++|+. +++.+++.++++. |-++..+.+.+...+|+..+++
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999984 7889999999998 5558899999999999877654
No 142
>KOG1174|consensus
Probab=97.46 E-value=0.0023 Score=60.64 Aligned_cols=197 Identities=12% Similarity=0.001 Sum_probs=139.1
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHH-HHhcCCCcCc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLA-EYLSIPSKNG 88 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A-~~l~~~~~~e 88 (265)
.-.||.-.|..|+..++|.-.. .+...+..+++.|.+++.|+.+.++=-+ .|-.|...+.+. .|+....-+|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~-~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS-EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc-CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 3578899999999997654333 3446788899999999999987433212 566677777654 5666665555
Q ss_pred c--------cccCCCHHHHHHHH-HHHHHc-CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 89 S--------SNFGTHLEINALKI-HTYLTM-YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 89 ~--------~~~~~~lE~~al~v-~~~l~~-~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
+ ..++.+.-.+-+.+ -+++-. .--+.|+|.+.+.+.+.|+-+-+-++.|-+-... |++++++.+.+..
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E--g~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE--GPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh--CccchHHHHHHHH
Confidence 4 12344444444432 222221 2257899999999999999987766666554444 8899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
.-.+|+.. +-+-+|.+..++..+.+|.+.+..||.+||. ++--|- .....-+++++.
T Consensus 465 L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~-~lEK~~~~~DAT 524 (564)
T KOG1174|consen 465 LIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR-LLEKSDDESDAT 524 (564)
T ss_pred HhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH-HHHhccCCCCcc
Confidence 99988765 6778999999999999999999999999776 444442 333344444444
No 143
>KOG1128|consensus
Probab=97.44 E-value=0.00047 Score=68.85 Aligned_cols=165 Identities=15% Similarity=0.017 Sum_probs=121.7
Q ss_pred HHHHHcccChhHH----hhhc-CChHHHHHHHHHHHhcCCCcCcc----cccCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy3174 50 CRSYLAQKKYKVV----LEEK-LPEELSCIKVLAEYLSIPSKNGS----SNFGTHLEINALKIHTYLTMYRNDLALKELK 120 (265)
Q Consensus 50 ~Raylalg~~~~~----l~ei-~~~~l~~~~~~A~~l~~~~~~e~----~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~ 120 (265)
.-||..+|+-.++ ..++ .+|.......+.+++..+.-++. .++. +.-+....+...+..+++..+-+.++
T Consensus 431 i~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~-sarA~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI-SARAQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh-hHHHHHhhccccccchhHHHHHHHHH
Confidence 4567777754322 2223 46777777778887776654432 1110 11122222223344688999999999
Q ss_pred HHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CH
Q psy3174 121 VMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SE 197 (265)
Q Consensus 121 ~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~p 197 (265)
..++++|=..-+-.+.++.++.- ++++.|...|.......|+....+|+++.+|+..|+-.+|-..+++|+.- |+
T Consensus 510 ~sl~~nplq~~~wf~~G~~ALql--ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 510 RSLEINPLQLGTWFGLGCAALQL--EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred HHhhcCccchhHHHhccHHHHHH--hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence 99999998886666666666655 78999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHHHHcCCCCccC
Q psy3174 198 DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 198 dtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+.-|...++...|.++++.
T Consensus 588 ~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 588 QIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred eeeechhhhhhhcccHHHHH
Confidence 78889999999999888765
No 144
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.42 E-value=0.00043 Score=44.83 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA 142 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~ 142 (265)
++....++.+|..+|++|.|++.|+++++.+||++ .+|..++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~-----~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP-----EAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH-----HHHHHhh
Confidence 46778889999999999999999999999999998 6676553
No 145
>KOG0548|consensus
Probab=97.34 E-value=0.0032 Score=61.07 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
|+--+-.-..+..+.+-|++..|.+.|.+++..+|++... +.|.+|+.| +.+.+|..--+...+.+|..+..+.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL----~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL----GEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH----hhHHHHHHHHHHHHhcCchHHHHHH
Confidence 3334444455889999999999999999999999988654 888899988 4589999998999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRL 210 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~ 210 (265)
-.|.|+..+.+|++|.+.++++++.||+ ++-....|...+
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999666 666777787764
No 146
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.33 E-value=0.0026 Score=62.57 Aligned_cols=104 Identities=13% Similarity=-0.110 Sum_probs=80.8
Q ss_pred cCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 92 FGTHLEINALKIHTYLTMYR--------NDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r--------~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
.|+...+++.++.++...+. ...|.+...++... ++.......+.+.+.+.. |++++|...|+++...
T Consensus 372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~--g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK--GKTDEAYQAINKAIDL 449 (517)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHc
Confidence 37777888877777766432 34555666665554 555666666666666655 8899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.| +...++.+|.++..+|++++|.+.+.+|+.++|.
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 98 5789999999999999999999999999999443
No 147
>KOG3785|consensus
Probab=97.32 E-value=0.0047 Score=57.70 Aligned_cols=168 Identities=15% Similarity=0.098 Sum_probs=81.8
Q ss_pred cHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHH-HHH------HHHHhcCCCcCcc
Q psy3174 23 NYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSC-IKV------LAEYLSIPSKNGS 89 (265)
Q Consensus 23 ~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~-~~~------~A~~l~~~~~~e~ 89 (265)
+|..||...+--.....+..-..+.|++-||..+|+|+.++++- +.++... +.+ +..|...+.. .
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~--~ 114 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI--A 114 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH--H
Confidence 56777776532222333333357899999999999999877643 1111111 110 1111110000 0
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.+-++++=+.-++-++.++.|+-..-...-... .|.+--||.+|-++... -.|+||+-+|..+.+..|.-..+=
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~L----qD~~EdqLSLAsvhYmR--~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSL----QDTLEDQLSLASVHYMR--MHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHH----hhhHHHHHhHHHHHHHH--HHHHHHHHHHHHHHhcChhhhhhH
Confidence 223455555555555555554432222211111 12233344444444433 346666666666665555544444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
..+|.|+.++.=|+=+.+.+.--+..+||
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 45566666666666665555555555444
No 148
>KOG3060|consensus
Probab=97.27 E-value=0.011 Score=52.77 Aligned_cols=125 Identities=14% Similarity=-0.082 Sum_probs=69.3
Q ss_pred HHHHHHHcccChhHHhhhc-----CChHHHH--HHHHHHHhcCCCcCcc--------cccCCCHHHHHHHHHHHHHcCCh
Q psy3174 48 YVCRSYLAQKKYKVVLEEK-----LPEELSC--IKVLAEYLSIPSKNGS--------SNFGTHLEINALKIHTYLTMYRN 112 (265)
Q Consensus 48 ~~~Raylalg~~~~~l~ei-----~~~~l~~--~~~~A~~l~~~~~~e~--------~~~~~~lE~~al~v~~~l~~~r~ 112 (265)
+.+.-+=+.|.++.+++-. +.|.-.+ .|.+|-......+.+. +.|+.+.|+..-++-+|+.+|.+
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 3455566777777555422 2222111 2334443333322222 34566677777777777777777
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 113 DLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 113 d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
..|-=.|.+++=+.|-+++.-...|=+....|| ++++-|..+|.......|.....|.|+
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 777777777766677666665444444444344 666667777777766666433344443
No 149
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.26 E-value=0.00038 Score=43.58 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
|...++++|.++..+|++++|+.+++++++.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3568999999999999999999999999874
No 150
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.24 E-value=0.0016 Score=62.40 Aligned_cols=40 Identities=10% Similarity=-0.087 Sum_probs=35.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT 130 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~ 130 (265)
..|++.+....++.+|..+||+++|...|+++++++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 3488999999999999999999999999999999998865
No 151
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.19 E-value=0.0064 Score=50.74 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
-.+...+.+-+..++.+.++..+..+.-+.|..+-..+..+|+.+.. +++.+|..+++++.+..|.++..--.+|+|+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r--~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR--GDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh--CCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34556677788888899999999988888998888888889998877 6799999999999888888888877888898
Q ss_pred HHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcC
Q psy3174 177 IAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLG 211 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~G 211 (265)
..+|+.+ =..+-.++++. +|++..-.-.+...-+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGADPDARALVRALLARAD 124 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 8888753 11222344555 7776655544444433
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.12 E-value=0.0056 Score=48.72 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=62.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH------HHHHHHHHH
Q psy3174 137 AWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED------TLINNMVTA 207 (265)
Q Consensus 137 a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd------tl~nl~~~~ 207 (265)
+|..=.. |+.++|..+|++....-.+. ...+.++|.++..+|++++|..++++++..+|+ +-..++.+.
T Consensus 8 A~a~d~~--G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSL--GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhc--CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 4443333 88999999999998864432 347889999999999999999999999987444 445677888
Q ss_pred HHcCCCCccC
Q psy3174 208 GRLGKGNEMS 217 (265)
Q Consensus 208 ~~~Gk~~ea~ 217 (265)
..+|++.|++
T Consensus 86 ~~~gr~~eAl 95 (120)
T PF12688_consen 86 YNLGRPKEAL 95 (120)
T ss_pred HHCCCHHHHH
Confidence 9999998865
No 153
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.08 E-value=0.017 Score=56.15 Aligned_cols=194 Identities=16% Similarity=0.207 Sum_probs=130.5
Q ss_pred hHHHHHhhhhccHHHHHHHHhhccc---C----------Ch---hhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHH
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKA---T----------DP---KVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIK 75 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~---~----------~~---~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~ 75 (265)
.+.+|..|- -|++|.+.+++... . +. ........+..-.++.-|-+..+++-+ ||.+ .
T Consensus 119 ~~~lRkay~--~y~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~sgv~~G~G~f~L~lSlL-Pp~~---~ 192 (468)
T PF10300_consen 119 GYKLRKAYK--IYKECMKIIEKLKKKAKSSSPGEPDSHDSWDDDSTKPIDEFFESGVYFGFGLFNLVLSLL-PPKV---L 192 (468)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhhhhccCCCCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhC-CHHH---H
Confidence 467787774 48888887654321 0 00 011223445567789999999999976 4433 3
Q ss_pred HHHHHhcCCCcCcc-----------cccCCCHHHHHHHHH-----HHH----HcCChHHHHHHHHHHHccCCCcHHHHHH
Q psy3174 76 VLAEYLSIPSKNGS-----------SNFGTHLEINALKIH-----TYL----TMYRNDLALKELKVMQDKDEDHTLTQLC 135 (265)
Q Consensus 76 ~~A~~l~~~~~~e~-----------~~~~~~lE~~al~v~-----~~l----~~~r~d~Aek~l~~~~~~~~d~~l~~la 135 (265)
.+.+++--.++++. ++....+-.+.+++. -.+ .-...+.|++++..+++.-|++.+-.+-
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34444444445443 112223333333211 111 2446788999999999999999999999
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHh---hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHH-HHHHHHH
Q psy3174 136 SAWVHIANNVDKLNEAFYTLQDLID---KYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTL-INNMVTA 207 (265)
Q Consensus 136 ~a~v~l~~g~~~~~eA~~~~~el~~---~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl-~nl~~~~ 207 (265)
.|.+.... |+.++|...|++... ..|. ....+--+|||++-+++|++|...+.+..+. .+-+. .-.++|+
T Consensus 273 ~gR~~~~~--g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 273 EGRLERLK--GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHh--cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 99998877 779999999998653 2232 3446788999999999999999999999876 33333 4668888
Q ss_pred HHcCCC
Q psy3174 208 GRLGKG 213 (265)
Q Consensus 208 ~~~Gk~ 213 (265)
..+|+.
T Consensus 351 ~~l~~~ 356 (468)
T PF10300_consen 351 LMLGRE 356 (468)
T ss_pred Hhhccc
Confidence 899987
No 154
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.01 E-value=0.00081 Score=40.63 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++..+|.+++.+|++++|...++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999988764
No 155
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.00 E-value=0.00085 Score=41.26 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3174 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 154 ~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe 186 (265)
.|++..+..|+++..++++|+++..+|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999996
No 156
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.0037 Score=56.08 Aligned_cols=72 Identities=32% Similarity=0.380 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCcc
Q psy3174 146 DKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++|.+|..-|++..+.||. ++.....+|-++..||+|++|..++..+... -||.|.-+++|...+|+.+++
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 5699999999999999995 6778999999999999999999999999876 789999999999999998765
Q ss_pred C
Q psy3174 217 S 217 (265)
Q Consensus 217 ~ 217 (265)
.
T Consensus 235 ~ 235 (262)
T COG1729 235 C 235 (262)
T ss_pred H
Confidence 3
No 157
>KOG0495|consensus
Probab=96.95 E-value=0.071 Score=53.43 Aligned_cols=120 Identities=13% Similarity=0.010 Sum_probs=95.8
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.||+..-+..+++||+..|++.+.|+..|..=...-|..+..=+.++-+.=.. +.+-.|..+++...-+.|....++.
T Consensus 680 ~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~--~~~~rAR~ildrarlkNPk~~~lwl 757 (913)
T KOG0495|consen 680 SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD--GQLVRARSILDRARLKNPKNALLWL 757 (913)
T ss_pred hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh--cchhhHHHHHHHHHhcCCCcchhHH
Confidence 47999999999999999999999999999999999999985433333332223 5789999999999999999998887
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHH--HH-HHHHHHHHHcCC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSED--TL-INNMVTAGRLGK 212 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl-~nl~~~~~~~Gk 212 (265)
..--.-++.|+.+.|+.+..+||+..|. .| +--|.+.-+-++
T Consensus 758 e~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 758 ESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 7777788999999999999999998444 33 344444444444
No 158
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.95 E-value=0.011 Score=49.30 Aligned_cols=86 Identities=16% Similarity=0.048 Sum_probs=72.3
Q ss_pred CCcHHHHHHH-HHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 127 EDHTLTQLCS-AWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 127 ~d~~l~~la~-a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
++.++.-|.+ .|+.+.. +...++..+++-+--..|..+.+-..-||+|+..|+|.+|..+|+++.+. .|-.-+-
T Consensus 6 ~~~iv~gLie~~~~al~~--~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRL--GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred cHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 4455555554 5665544 68999999999999999999999999999999999999999999998887 6667788
Q ss_pred HHHHHHHcCCCC
Q psy3174 203 NMVTAGRLGKGN 214 (265)
Q Consensus 203 l~~~~~~~Gk~~ 214 (265)
++.|+..+|.+.
T Consensus 84 lA~CL~~~~D~~ 95 (160)
T PF09613_consen 84 LALCLYALGDPS 95 (160)
T ss_pred HHHHHHHcCChH
Confidence 899999999874
No 159
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.95 E-value=0.0013 Score=63.15 Aligned_cols=69 Identities=9% Similarity=0.052 Sum_probs=55.5
Q ss_pred cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 125 KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM---LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 125 ~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~---lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+|++....+..+... ...|+|++|...|++.....|++.. .++++|+||.++|+++||...+++|++.
T Consensus 70 ~dP~~a~a~~NLG~AL--~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSL--FSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677774333333322 2348999999999999999998774 5999999999999999999999999997
No 160
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.90 E-value=0.0019 Score=41.66 Aligned_cols=38 Identities=13% Similarity=-0.066 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNM 204 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~ 204 (265)
.++..+|.++..+|++++|+.+++++++. ||+....++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 45667788888888888888888888887 555555554
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.84 E-value=0.072 Score=48.09 Aligned_cols=102 Identities=11% Similarity=0.075 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCC--
Q psy3174 93 GTHLEINALKIHTYLTM-YRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGS-- 164 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~-~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~-- 164 (265)
..-..+...++.+|... |+++.|.+.|+++.++ .++.+ ......+.+++ ...++|++|..+|+++...+-.
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~-~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP-HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 33445566666667666 6777777777777664 12211 11111111111 2235677777777776654321
Q ss_pred -C---H-HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 165 -T---P-MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 165 -t---~-~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+ . ..+....+|++.+|++..|...+.+..+.
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1 1 13344566777777777777777776655
No 162
>KOG0548|consensus
Probab=96.83 E-value=0.012 Score=57.24 Aligned_cols=101 Identities=9% Similarity=-0.029 Sum_probs=83.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHH-H-HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLT-Q-LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~-~-la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g 180 (265)
+-..+.-|+++.|...|.+++.++|.+.+. . -..++..+ ++|++|+.--.+..+..|+=+..++-+|+++..+|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~----~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL----GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH----hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 446778899999999999999999876543 2 22244432 67999999999999999988999999999999999
Q ss_pred CHHHHHHHHHHHhcCCH---HHHHHHHHHH
Q psy3174 181 KYEEAWDLLQDTAGDSE---DTLINNMVTA 207 (265)
Q Consensus 181 ~~eEAe~~l~~al~~~p---dtl~nl~~~~ 207 (265)
+|+||...+.+.|+.+| -...++.-++
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999944 4667777666
No 163
>KOG0495|consensus
Probab=96.79 E-value=0.034 Score=55.60 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=88.3
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
++|++..+..-.+++-++.|..+.|+..+.++++--|.+-+.=-...|+. ..+ +| ...+.++..++-.+|.+|.
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le-~~~-~r----kTks~DALkkce~dphVll 821 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLE-PRP-QR----KTKSIDALKKCEHDPHVLL 821 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhc-cCc-cc----chHHHHHHHhccCCchhHH
Confidence 35778888888888888888888888888888887777764333333331 111 12 3345556666677788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
..|..+-...+++.|.+.+.+|+.+ +.|+.+++-......|...
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 9999999999999999999999998 5559999999999999654
No 164
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.77 E-value=0.037 Score=45.35 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=65.2
Q ss_pred ccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHcCC--CC
Q psy3174 146 DKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE---D---TLINNMVTAGRLGK--GN 214 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p---d---tl~nl~~~~~~~Gk--~~ 214 (265)
|+|++|...|+++-.++|- +......++.++...|+|++|...+++-+.+|| + ++.-.+.+...+.. ..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~ 103 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQ 103 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHh
Confidence 8899999999999999993 566778899999999999999999999999944 4 44444544444433 00
Q ss_pred ccCCCChhhhcHHHHHHHHHHHHhhc
Q psy3174 215 EMSVSPPFLFRSDETTATLDACGLQS 240 (265)
Q Consensus 215 ea~p~hp~~~~~~~~~~~FD~~~~~~ 240 (265)
..+...-........-..|.+++.+|
T Consensus 104 ~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 104 SFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred hhcccccCcHHHHHHHHHHHHHHHHC
Confidence 00001112222344556666666666
No 165
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.75 E-value=0.042 Score=49.11 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH-----HHHHHHHHHH----hccccHHHHHHHHHHHHhhcC
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT-----QLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~-----~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p 163 (265)
|-+...+..+++++.+.+++++|.....+.+..-|.|.-. ..+++++--. .-+....+|+.-|+++.+++|
T Consensus 68 ~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 68 PYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 3456889999999999999999999999999987766533 2222222111 222556789999999999999
Q ss_pred CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCccC---
Q psy3174 164 STPMLV-----------------NAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNEMS--- 217 (265)
Q Consensus 164 ~t~~lL-----------------n~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ea~--- 217 (265)
+|.-.- -..|--|++.|.|.-|..-+++.++. -.+.|.-+...+..+|-.+++-
T Consensus 148 nS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 148 NSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 763321 23566788999999999999999987 3347889999999999987653
Q ss_pred -------CCChhhhcH
Q psy3174 218 -------VSPPFLFRS 226 (265)
Q Consensus 218 -------p~hp~~~~~ 226 (265)
|++||.++-
T Consensus 228 ~vl~~N~p~s~~~~~~ 243 (254)
T COG4105 228 KVLGANYPDSQWYKDA 243 (254)
T ss_pred HHHHhcCCCCcchhhh
Confidence 999988764
No 166
>KOG1125|consensus
Probab=96.73 E-value=0.027 Score=55.26 Aligned_cols=144 Identities=9% Similarity=0.009 Sum_probs=106.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIAN---NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~---g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
+.-+..+++.|.+.+|.=.|..+...+|+|. +||..|.. ..++=+.|+.-+++..+..|....+|-.+|++|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha-----eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA-----EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH-----HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4457789999999999999999999999999 89988873 236777899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhcC-----------------------CHHHHHHHHHHHHHcCCCCccCCCChhhhcH----HHH
Q psy3174 177 IAQDKYEEAWDLLQDTAGD-----------------------SEDTLINNMVTAGRLGKGNEMSVSPPFLFRS----DET 229 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~-----------------------~pdtl~nl~~~~~~~Gk~~ea~p~hp~~~~~----~~~ 229 (265)
.-+|.=.+|..+|...+.. +++.+.++-..+...++.... ...|.+..- --.
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhc
Confidence 9999999999999998764 222333333322222221100 022333332 347
Q ss_pred HHHHHHHHhhccccCCCCCc
Q psy3174 230 TATLDACGLQSNSESTPRDS 249 (265)
Q Consensus 230 ~~~FD~~~~~~~~~~~~l~~ 249 (265)
..+|||.+.-|...+..-..
T Consensus 443 s~efdraiDcf~~AL~v~Pn 462 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPN 462 (579)
T ss_pred chHHHHHHHHHHHHHhcCCc
Confidence 88999999999877544433
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.71 E-value=0.029 Score=50.64 Aligned_cols=115 Identities=14% Similarity=0.150 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHH---hcc-ccHHHHHHHHHHHHhhcC---C---CHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIA---NNV-DKLNEAFYTLQDLIDKYG---S---TPML 168 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~---~g~-~~~~eA~~~~~el~~~~p---~---t~~l 168 (265)
...+.+|... +++.|...|+++.++- ...-..+.|..+.+++ ... +++++|...|+++.+.+. . ....
T Consensus 79 ~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 79 EEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 3344454444 6666666666665531 0011112222223222 233 689999999999876543 1 1236
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC-------CH---HHHHHHHHHHHHcCCCCc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD-------SE---DTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~-------~p---dtl~nl~~~~~~~Gk~~e 215 (265)
+..+|.++..+|+|++|..++++.... .. +.+.+.+.|....|+...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~ 214 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVA 214 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHH
Confidence 788999999999999999999998764 11 355677888888887643
No 168
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.65 E-value=0.024 Score=46.82 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
.+...+.+.+..++++.++..+..+.-+-|...-..+..+|+.+.. |++.||..+|+++.+..+.+|..--.+|+|+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r--g~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR--GNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHc--CCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 3445566677788999999999888888888888888889998877 67999999999999888888888888889999
Q ss_pred HcCCHH
Q psy3174 178 AQDKYE 183 (265)
Q Consensus 178 ~~g~~e 183 (265)
.+|+..
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888753
No 169
>KOG3081|consensus
Probab=96.62 E-value=0.098 Score=47.19 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~ 190 (265)
.+..|-=+|..+.+.-+.-+++++.++-+.+.. +||+||..+.+++.++.+..|..|.++-+|-..+|+-+|+.+-+.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~--~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL--GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHh--cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 345555567777777778888888888888866 789999999999999999889988888888888998888776555
Q ss_pred HHhcC-CHH
Q psy3174 191 DTAGD-SED 198 (265)
Q Consensus 191 ~al~~-~pd 198 (265)
.-+.. ||+
T Consensus 266 ~QLk~~~p~ 274 (299)
T KOG3081|consen 266 SQLKLSHPE 274 (299)
T ss_pred HHHHhcCCc
Confidence 44444 665
No 170
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.60 E-value=0.089 Score=54.53 Aligned_cols=121 Identities=14% Similarity=-0.007 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC---cHH--HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH----
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDED---HTL--TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP---- 166 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d---~~l--~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~---- 166 (265)
..++..++.++...|+++.|...+.++..+... ... ..............|..+.|.....+.....+...
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 344555666777777777777777776553211 110 00000000111123556666666555443221111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CH---HHHHHHHHHHHHcCCCCcc
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SE---DTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~p---dtl~nl~~~~~~~Gk~~ea 216 (265)
..+..+|.++..+|++++|...+.+++.. .. .++..++.++..+|+..++
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 12457888999999999999999999875 22 2667889999999998654
No 171
>KOG0543|consensus
Probab=96.60 E-value=0.026 Score=53.25 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
+-|...++.||+++++++.|.+.-.++++.+++++-..---+-..+.. +.|+.|...|+++.+..|++-.+-+-+..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~--~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL--GEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345667788999999999999999999999999976655444444444 669999999999999999998899999989
Q ss_pred HHHcCCHHHH-HHHHHHHhcC
Q psy3174 176 LIAQDKYEEA-WDLLQDTAGD 195 (265)
Q Consensus 176 ~~~~g~~eEA-e~~l~~al~~ 195 (265)
.-+..++.+. .+++...+..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 8888888877 4566666654
No 172
>KOG4340|consensus
Probab=96.59 E-value=0.03 Score=51.44 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
++-+.+-|...-+++..++..+.+.- ++...-+++-++.+.... |++++|..-|++..+-.+-.|.+-.++|.||.
T Consensus 114 ~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllyke--gqyEaAvqkFqaAlqvsGyqpllAYniALaHy 189 (459)
T KOG4340|consen 114 VLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKE--GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY 189 (459)
T ss_pred HHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecc--ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 34444556666777888888777763 233333344444553333 78999999999999998988888889999999
Q ss_pred HcCCHHHHHHHHHHHhcC
Q psy3174 178 AQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~ 195 (265)
+.|.+..|.++..+..++
T Consensus 190 ~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIER 207 (459)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 999999999999998886
No 173
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.57 E-value=0.0028 Score=37.88 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
..+..+|.+++.+|+|++|...++++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46788999999999999999999999987653
No 174
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.086 Score=48.10 Aligned_cols=129 Identities=13% Similarity=0.040 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+++.+....++.+|+.+|+.+.|+.++..+-.-..+.-... ..+|+.+...-....+.-. ++.-....|++.....-+
T Consensus 165 ~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~~~-l~~~~aadPdd~~aa~~l 242 (304)
T COG3118 165 PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEIQD-LQRRLAADPDDVEAALAL 242 (304)
T ss_pred cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCHHH-HHHHHHhCCCCHHHHHHH
Confidence 77889999999999999999999999988744333332212 3456655532222222222 233345679999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCccCCCChhhhcHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKGNEMSVSPPFLFRSDET 229 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~~ea~p~hp~~~~~~~~ 229 (265)
|..+...|+.++|.+.|-..+.+ ++..---++.+....| |.||.+..+-.+
T Consensus 243 A~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g------~~Dp~~~~~RRk 298 (304)
T COG3118 243 ADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG------PADPLVLAYRRK 298 (304)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC------CCCHHHHHHHHH
Confidence 99999999999999999888876 5555556666666666 566766665443
No 175
>KOG0543|consensus
Probab=96.52 E-value=0.036 Score=52.35 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=78.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHcc-------CCCc--H-HHHHHHHHHHHHh---ccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDK-------DEDH--T-LTQLCSAWVHIAN---NVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~-------~~d~--~-l~~la~a~v~l~~---g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
+-.|.+.|++.+|.+.|+++..+ +++. . ....-.+++|++. -.++|.+|...-.+.....|.+...|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 44789999999999999998774 1111 1 1111113333331 11679999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAG 208 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~ 208 (265)
.-.|-+++.+|+|+.|...++++++..|+ +-.-++.|-.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999444 4444454443
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.51 E-value=0.023 Score=48.90 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=64.2
Q ss_pred ccccHHHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCcc
Q psy3174 144 NVDKLNEAFYTLQDLI-DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 144 g~~~~~eA~~~~~el~-~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~~ea 216 (265)
.-|++.||...|++.. ..+..++.+|.|+|.+.+..+++.+|...|+...+- .||+.--++.++..+|++.++
T Consensus 101 elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 101 ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 3388999999999975 457789999999999999999999999999999987 677777889999999998754
No 177
>KOG1156|consensus
Probab=96.47 E-value=0.13 Score=51.27 Aligned_cols=100 Identities=11% Similarity=-0.048 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.=|.-..+.++-...+|++|.|.|++++.|++|+.-..--.+++.+-. +.++-..+.-.++.+..|.-...+.+.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm--Rd~~~~~~tr~~LLql~~~~ra~w~~~ 149 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM--RDYEGYLETRNQLLQLRPSQRASWIGF 149 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHhhhhhHHHHHHH
Confidence 566778888888999999999999999999999999974333333443333 568888888888899999888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~ 194 (265)
|+++...|++..|.+++.+-.+
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876544
No 178
>KOG2053|consensus
Probab=96.44 E-value=0.066 Score=55.01 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=87.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
+||+.+-..++.+.++.++||.|+|-+.+...-....++.+|.-+. .+.....+++++|+.+|+.+.+++|. -.++.
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l--~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~ 114 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL--QNVYRDLGKLDEAVHLYERANQKYPS-EELLY 114 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH--HHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHH
Confidence 5789999999999999999999999988877766555554443332 22333448899999999999999999 77899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTA 207 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~ 207 (265)
++.-||.+-+.|.+=...-.+.... +|-.+++-+.+.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 9999999999998866655555444 666666654433
No 179
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.39 E-value=0.007 Score=36.39 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDH 129 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~ 129 (265)
++.+.++.+|..+|++++|.+.|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 678889999999999999999999999999874
No 180
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.37 E-value=0.056 Score=56.01 Aligned_cols=121 Identities=14% Similarity=0.008 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-cH----HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC---C--
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDED-HT----LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG---S-- 164 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~~----l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p---~-- 164 (265)
..++.+..+.++...|+++.|...++++++..+. .. .+....+.+.. ..|++.+|...+++...... +
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~--~~G~~~~A~~~~~~al~~~~~~g~~~ 528 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH--CKGELARALAMMQQTEQMARQHDVYH 528 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHhhhcchH
Confidence 3466677888999999999999999999874332 22 11122223322 34889999999999865422 1
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C---H-H--HHHHHHHHHHHcCCCCccC
Q psy3174 165 -TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----S---E-D--TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 165 -t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~---p-d--tl~nl~~~~~~~Gk~~ea~ 217 (265)
....++.+|.++..+|++++|+..+.++++. . + . +..+++.+....|+.+++.
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1336788999999999999999999999886 1 1 1 3346778888889987653
No 181
>KOG4555|consensus
Probab=96.35 E-value=0.026 Score=46.02 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=59.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHH------HHHHHHHHHHHcCCCCcc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-SED------TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pd------tl~nl~~~~~~~Gk~~ea 216 (265)
+|+++.|+..|.+.....|..+..+|+.|-++..||+.++|.+.+.+|+++ .|- ....-+.++..+|+.+.+
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 378999999999999999988889999999999999999999999999988 332 345667788888887654
No 182
>KOG1128|consensus
Probab=96.35 E-value=0.024 Score=57.04 Aligned_cols=125 Identities=18% Similarity=0.061 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHH----------HH-HH--------------HHHHhcccc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQL----------CS-AW--------------VHIANNVDK 147 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~l----------a~-a~--------------v~l~~g~~~ 147 (265)
...+|...-.+.||+..|..+.|+.+.++-++-+||+.+--+ -+ || -.+...+++
T Consensus 421 ~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 421 FERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKD 500 (777)
T ss_pred HHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchh
Confidence 678888999999999999999999999999996666553310 00 11 111233467
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 148 LNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
++++...++.-....|-.+..+.+.|.|.++.+++..|...+..+... |.+...|+.+.+..+|+..+++
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 888888888888888988889999999999999999999999999998 4457889999999999987654
No 183
>PRK11906 transcriptional regulator; Provisional
Probab=96.30 E-value=0.12 Score=49.93 Aligned_cols=120 Identities=13% Similarity=-0.052 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHH---ccCCCcHHHHHHHHHHHHHh---c----cccHHHHHHHHHHHHhhcCC
Q psy3174 98 INALKIHTYLTMYR---NDLALKELKVMQ---DKDEDHTLTQLCSAWVHIAN---N----VDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 98 ~~al~v~~~l~~~r---~d~Aek~l~~~~---~~~~d~~l~~la~a~v~l~~---g----~~~~~eA~~~~~el~~~~p~ 164 (265)
..++++.-.+..+- .+.|..++.+++ +++|+.+...-..||..+.. | .....+|...-+...+..|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44677766655443 456777899999 99999998887777777662 2 24466788888999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
++..+-.+|.+....|+++.|...+++|+..+|+ ++.-.+.+..+.|+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999554 7778888999999987654
No 184
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.28 E-value=0.0099 Score=35.40 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDH 129 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~ 129 (265)
++..+.++.++..+|+++.|.+.++++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3678889999999999999999999999998875
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.11 Score=47.24 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=72.2
Q ss_pred HHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcC
Q psy3174 119 LKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD---KYEEAWDLLQDTAGD 195 (265)
Q Consensus 119 l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g---~~eEAe~~l~~al~~ 195 (265)
++..+..+|.+.-.=.-++-+++.. +++.+|..-|++..+..|+++..+-+.|.+++.+. .-.+|..++.+++..
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 4444456788773222222233323 78999999999999999999999889998888765 467899999999988
Q ss_pred ---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 196 ---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 ---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|+..++-|+.-+-..|+..++.
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~ 247 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAA 247 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHH
Confidence 5558888888888899887654
No 186
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.19 E-value=0.051 Score=44.88 Aligned_cols=83 Identities=17% Similarity=0.057 Sum_probs=69.7
Q ss_pred HHHHHHH-HHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHH
Q psy3174 130 TLTQLCS-AWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMV 205 (265)
Q Consensus 130 ~l~~la~-a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~ 205 (265)
++.-|.+ .|+.+.. +.+.++..+.+-+--..|.++.+----+|+|+..|+|.||..++++..+. -|-.-+-+++
T Consensus 9 iv~gLi~~~~~aL~~--~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 9 LLGGLIEVLMYALRS--ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 3443333 5666654 88999999999999999999998888899999999999999999999887 3666788899
Q ss_pred HHHHcCCCC
Q psy3174 206 TAGRLGKGN 214 (265)
Q Consensus 206 ~~~~~Gk~~ 214 (265)
|...+|.+.
T Consensus 87 CL~al~Dp~ 95 (153)
T TIGR02561 87 CLNAKGDAE 95 (153)
T ss_pred HHHhcCChH
Confidence 999999875
No 187
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.17 E-value=0.0091 Score=36.87 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.++++|.++.++|+|++|.++++++|..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999998764
No 188
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.06 Score=46.40 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHH---HHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLC---SAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la---~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
..++..+...|++|.|+..++.++...-|+.+..++ .+.|-+.+ +++++|....+-..+. ++.+......|.++
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~--~k~D~AL~~L~t~~~~-~w~~~~~elrGDil 169 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ--KKADAALKTLDTIKEE-SWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhccccc-cHHHHHHHHhhhHH
Confidence 345778888999999999999999877777665444 45565555 7799999988766544 56777788899999
Q ss_pred HHcCCHHHHHHHHHHHhcC
Q psy3174 177 IAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~ 195 (265)
+.+|+-.+|...+.++++.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 170 LAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHcCchHHHHHHHHHHHHc
Confidence 9999999999999999998
No 189
>KOG2471|consensus
Probab=96.13 E-value=0.0071 Score=58.47 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH-hhcCC---CH----
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI-DKYGS---TP---- 166 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~-~~~p~---t~---- 166 (265)
-.|+.-..|..|+.+..+..+..+.+.+..+..|+....+--+-...+. |++..|.+..--.. .++|. ||
T Consensus 205 k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~--gn~~kA~KlL~~sni~~~~g~~~T~q~~~ 282 (696)
T KOG2471|consen 205 KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAH--GNHPKAMKLLLVSNIHKEAGGTITPQLSS 282 (696)
T ss_pred chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHh--cchHHHHHHHHhcccccccCccccchhhh
Confidence 4567777889999999999999999999998888876655555555555 67888888776542 33332 43
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhc-C--------------------CHHHHHHHHHHHHHcCCCCccC
Q psy3174 167 -MLVNAQVAVLIAQDKYEEAWDLLQDTAG-D--------------------SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 167 -~lLn~~A~~~~~~g~~eEAe~~l~~al~-~--------------------~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
...|++|++|.++|+|.-+.-++.+|+. . .-+++.|.++.+.|.|||-.++
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Af 355 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAF 355 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHH
Confidence 3459999999999999999999999995 1 3457899999999999998766
No 190
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.12 E-value=0.061 Score=52.34 Aligned_cols=121 Identities=13% Similarity=0.086 Sum_probs=93.8
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD----KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~----~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t 165 (265)
..||++.=-++..++++...|+++.|.+.|.++.+ |.+=+.+..-=.+|..+.. .+|++|...|.++.+...|+
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~--~~w~~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ--HDWEEAAEYFLRLLKESKWS 338 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH--chHHHHHHHHHHHHhccccH
Confidence 45899999999999999999999999999998764 2333444444458888888 67999999999999999997
Q ss_pred HH-HHHHHHHHHHHcCCH-------HHHHHHHHHHhcC--------CH-H-HHHHHHHHHHHcCC
Q psy3174 166 PM-LVNAQVAVLIAQDKY-------EEAWDLLQDTAGD--------SE-D-TLINNMVTAGRLGK 212 (265)
Q Consensus 166 ~~-lLn~~A~~~~~~g~~-------eEAe~~l~~al~~--------~p-d-tl~nl~~~~~~~Gk 212 (265)
.. -....|+|+...|+. ++|..++.++-.. -| | ...-.+.-+...++
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~~ 403 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQAK 403 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcCC
Confidence 77 457889999999999 8888888777543 22 3 34455555555543
No 191
>KOG1156|consensus
Probab=96.07 E-value=0.069 Score=53.20 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=102.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.+|+..|.+++.+..+..+||.++|-..++..+..|..+.++==..+.+.-.+ .+|.+|..-|+.+....|++..+|-
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilr 113 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILR 113 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788899999999999999999999999999999999987755555554333 8899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSEDT---LINNMVTAGRLGKGNE 215 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pdt---l~nl~~~~~~~Gk~~e 215 (265)
.++....|+|+|+-....=.+.++..|.- .+-.++.....|....
T Consensus 114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888886653 3445555555665543
No 192
>KOG2376|consensus
Probab=96.04 E-value=0.032 Score=55.01 Aligned_cols=119 Identities=15% Similarity=0.046 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH-HHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV-NAQ 172 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL-n~~ 172 (265)
++++.++.-+..+...+.+++|.+...+++...||++-..-.- .|++.+ .++|++|+++.+.-.-. .+.... .-.
T Consensus 10 ~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cK-vValIq-~~ky~~ALk~ikk~~~~--~~~~~~~fEK 85 (652)
T KOG2376|consen 10 DNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCK-VVALIQ-LDKYEDALKLIKKNGAL--LVINSFFFEK 85 (652)
T ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhh-Hhhhhh-hhHHHHHHHHHHhcchh--hhcchhhHHH
Confidence 4668888999999999999999999999999987776443332 233332 37899999666543211 111111 578
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|.|+.++++.+||...+. .++. ++-++.--+-++..+|+.++++
T Consensus 86 AYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydeal 130 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEAL 130 (652)
T ss_pred HHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHH
Confidence 899999999999999998 6666 4447777788999999988765
No 193
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.99 E-value=0.051 Score=46.28 Aligned_cols=85 Identities=11% Similarity=0.025 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHhcC-------CH---HHHHHHHHHHHHcCCCC
Q psy3174 148 LNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY---EEAWDLLQDTAGD-------SE---DTLINNMVTAGRLGKGN 214 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~---eEAe~~l~~al~~-------~p---dtl~nl~~~~~~~Gk~~ 214 (265)
++.|...++....+.|.++..|+..|.+++.+.++ +|+..++++|.++ +| +++.|++.++..+|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~-- 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF-- 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--
Confidence 56788888888889999999999999988888666 5677777777664 44 589999999999985
Q ss_pred ccCCCChhhhcHHHHHHHHHHHHhhcc
Q psy3174 215 EMSVSPPFLFRSDETTATLDACGLQSN 241 (265)
Q Consensus 215 ea~p~hp~~~~~~~~~~~FD~~~~~~~ 241 (265)
++-+..+.+..|++....|.
T Consensus 85 -------l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 85 -------LTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp -------H---HHHHHHHHHHHHHHHH
T ss_pred -------hcCChHHHHHHHHHHHHHHH
Confidence 33334555666666666665
No 194
>KOG2003|consensus
Probab=95.90 E-value=1.7 Score=42.29 Aligned_cols=173 Identities=15% Similarity=0.083 Sum_probs=87.0
Q ss_pred hhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHH
Q psy3174 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLE 97 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE 97 (265)
.|--|.|.++.+...... .++....++.+-+-..+-++|..+.+++-+ +++-+-. ..+.|
T Consensus 500 ~f~ngd~dka~~~ykeal-~ndasc~ealfniglt~e~~~~ldeald~f-------~klh~il------------~nn~e 559 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEAL-NNDASCTEALFNIGLTAEALGNLDEALDCF-------LKLHAIL------------LNNAE 559 (840)
T ss_pred eeecCcHHHHHHHHHHHH-cCchHHHHHHHHhcccHHHhcCHHHHHHHH-------HHHHHHH------------HhhHH
Confidence 366788888887753222 222234455555555566777776655521 1111111 12334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCC--CcHHHHHHHHHH--------------------------------HHHh
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDE--DHTLTQLCSAWV--------------------------------HIAN 143 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~~l~~la~a~v--------------------------------~l~~ 143 (265)
.++.++-||..+.++..|...|-++..+=| +.++..|+.-|- ++-+
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 444445555555555555555544444322 223333332221 1212
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
.=+++|+.+|++..-..|.-..--...|.|+.+-|+|..|.+++++.-.+ +-|.|--|..++.-+|-
T Consensus 640 --qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 640 --QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 22455666666665555543333334666777777777777777766665 44455555555555554
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.69 E-value=0.018 Score=34.41 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDH 129 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~ 129 (265)
+..+.++++|..+|++++|.+.|+++++++||+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 567889999999999999999999999988863
No 196
>KOG1127|consensus
Probab=95.65 E-value=0.064 Score=55.83 Aligned_cols=100 Identities=16% Similarity=0.051 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|.+.++..-++++|...||+.-|.|.+.++..++|+++-.+--.|-+.... |+|.+|...++++...+..-....+++
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~--GkYkeald~l~~ii~~~s~e~~~q~gL 670 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN--GKYKEALDALGLIIYAFSLERTGQNGL 670 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 888899999999999999999999999999999999987776666665555 779999999999888776555577777
Q ss_pred HHHHHHc-------CCHHHHHHHHHHHhc
Q psy3174 173 VAVLIAQ-------DKYEEAWDLLQDTAG 194 (265)
Q Consensus 173 A~~~~~~-------g~~eEAe~~l~~al~ 194 (265)
|-|+++. |-+-.|.++++++++
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777764 334444445554444
No 197
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.62 E-value=0.16 Score=38.27 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCccCCCChhhhcHH
Q psy3174 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED-----TLINNMVTAGRLGKGNEMSVSPPFLFRSD 227 (265)
Q Consensus 153 ~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd-----tl~nl~~~~~~~Gk~~ea~p~hp~~~~~~ 227 (265)
.-+++.....|+++.....+|.+++..|++++|.+.+.+++..+++ .---++.+...+| |.||.+..+-
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg------~~~plv~~~R 82 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG------PGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-------TT-HHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC------CCChHHHHHH
Confidence 3456667788999999999999999999999999999999998433 4456677777777 5689888876
Q ss_pred HHH
Q psy3174 228 ETT 230 (265)
Q Consensus 228 ~~~ 230 (265)
.+-
T Consensus 83 RkL 85 (90)
T PF14561_consen 83 RKL 85 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 198
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.53 E-value=0.01 Score=35.01 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+..+|+|+..+|++++|...+++.++.+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3556788888888888888888887776654
No 199
>KOG4340|consensus
Probab=95.50 E-value=0.078 Score=48.78 Aligned_cols=59 Identities=10% Similarity=-0.055 Sum_probs=49.5
Q ss_pred HhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 159 IDKYG--STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 159 ~~~~p--~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+.-| .+...+++.|++..+.|.|++|..-++.|++. +|-+..|++.+....|....++
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL 198 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH
Confidence 34445 47778999999999999999999999999998 9999999988888888765543
No 200
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.32 E-value=0.027 Score=33.13 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
+++.++.++..+|+++.|.+.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444445555555555555555555444443
No 201
>KOG2300|consensus
Probab=95.04 E-value=1.7 Score=42.55 Aligned_cols=192 Identities=15% Similarity=0.049 Sum_probs=104.5
Q ss_pred hHHHHHhhhhccHHHHHHHHhhccc-------CChhh------hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHH
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKA-------TDPKV------LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLA 78 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~-------~~~~~------~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A 78 (265)
|.+|+...-.|-|.+|+++..++-. .+... +......+..|.+-.|.+..++.+| .-.-
T Consensus 279 l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i--------~dm~ 350 (629)
T KOG2300|consen 279 LVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEI--------VDMK 350 (629)
T ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH--------HHHH
Confidence 5678888889999999987432211 11000 2223333445566666776666654 1111
Q ss_pred HHhc-CCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-c--HHHHHHHHHHHHHhccccHHHHHHH
Q psy3174 79 EYLS-IPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED-H--TLTQLCSAWVHIANNVDKLNEAFYT 154 (265)
Q Consensus 79 ~~l~-~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~--~l~~la~a~v~l~~g~~~~~eA~~~ 154 (265)
++.. .++.- -.-.-+.-+..++++--+.-|-++.|+..+..+.+.-+. + ..+++-.|-+++.. ++-++-+.+
T Consensus 351 ~w~~r~p~~~--Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~--~~~ed~y~~ 426 (629)
T KOG2300|consen 351 NWCTRFPTPL--LLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRI--GDAEDLYKA 426 (629)
T ss_pred HHHHhCCchH--HHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHh--ccHHHHHHH
Confidence 1111 11000 000113344556666666778889999888888764332 2 22333333343433 556666666
Q ss_pred HHHHHhh--cCC-CHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHH--------HHHHHHHHHHHcCCCCc
Q psy3174 155 LQDLIDK--YGS-TPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD-SED--------TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 155 ~~el~~~--~p~-t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pd--------tl~nl~~~~~~~Gk~~e 215 (265)
.+-+... ++. +.. ++...|.-.+.++++.||...+.+.++. +.+ .|.-|+-+..-.|+..+
T Consensus 427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~e 503 (629)
T KOG2300|consen 427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVE 503 (629)
T ss_pred HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 6666543 231 222 3445566778899999999999999887 433 23344555555666544
No 202
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.96 E-value=0.061 Score=47.63 Aligned_cols=97 Identities=6% Similarity=-0.028 Sum_probs=77.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccC-CCChhhh
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGKGNEMS-VSPPFLF 224 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk~~ea~-p~hp~~~ 224 (265)
+....|-..|.++....|.-...+.-++..+-+-|+++.|...+.+.++++|+-..--++=...+|+.+... |-..|
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~~e~p~~pP~aY-- 86 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGRGETPEKPPSAY-- 86 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcCCCCCCCCchHH--
Confidence 456777788888888888777788888888999999999999999999999997776667777889876544 44345
Q ss_pred cHHHHHHHHHHHHhhcccc-CCCCC
Q psy3174 225 RSDETTATLDACGLQSNSE-STPRD 248 (265)
Q Consensus 225 ~~~~~~~~FD~~~~~~~~~-~~~l~ 248 (265)
++..||.++++|+-. |.+|+
T Consensus 87 ----Ve~LFD~~Ae~Fd~~LVdkL~ 107 (287)
T COG4976 87 ----VETLFDQYAERFDHILVDKLG 107 (287)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999866 66665
No 203
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.91 E-value=0.14 Score=43.71 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHhc---c---ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC--
Q psy3174 112 NDLALKELKVMQDKDEDH--TLTQLCSAWVHIANN---V---DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK-- 181 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~--~l~~la~a~v~l~~g---~---~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~-- 181 (265)
++.|.+.+......+|.+ .|+.=+.+.+.+++- . .-+++|..=|+++....|+....+.++|.+++.+++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 677888888877777774 566777777777632 1 347788888888889999999999999999999887
Q ss_pred ---------HHHHHHHHHHHhcCCHH
Q psy3174 182 ---------YEEAWDLLQDTAGDSED 198 (265)
Q Consensus 182 ---------~eEAe~~l~~al~~~pd 198 (265)
|++|...+++|.+.+|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 66666677776666665
No 204
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.84 E-value=0.024 Score=33.82 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.++..+|.++..+|++++|...++++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3677899999999999999999999987644
No 205
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.69 E-value=0.04 Score=30.59 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
..++.+|.+++.+|++++|...++++++.+|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567899999999999999999999987644
No 206
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.61 E-value=0.5 Score=40.81 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=73.1
Q ss_pred hhHHHHHhhhhccHHHHHHHHhh-cccCCh-hhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCc
Q psy3174 11 ELFDVRNSYYLGNYQQCIKEGQR-LKATDP-KVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 11 elf~vr~~fy~G~Y~~~i~~~~~-~~~~~~-~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e 88 (265)
-|.-.|..+-.|+|.+|+...+. +....+ ..+.-....++|.++.+|+++..+..++.+.-..+...
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~----------- 160 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAI----------- 160 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHH-----------
Confidence 46677889999999999998643 333333 34666777889999999999987775411111111110
Q ss_pred ccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHH
Q psy3174 89 SSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCS 136 (265)
Q Consensus 89 ~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~ 136 (265)
..-+++-+++..|+-++|++.|.++++.+++....++..
T Consensus 161 ---------~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lq 199 (207)
T COG2976 161 ---------VAELRGDILLAKGDKQEARAAYEKALESDASPAAREILQ 199 (207)
T ss_pred ---------HHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHHHH
Confidence 012344599999999999999999999987766555544
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.57 E-value=1.6 Score=34.30 Aligned_cols=113 Identities=16% Similarity=0.116 Sum_probs=83.1
Q ss_pred HHHHHHHH-HHHHcCChHHHHHHHHHHHccCCC---cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-CHHHHHH
Q psy3174 97 EINALKIH-TYLTMYRNDLALKELKVMQDKDED---HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS-TPMLVNA 171 (265)
Q Consensus 97 E~~al~v~-~~l~~~r~d~Aek~l~~~~~~~~d---~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~-t~~lLn~ 171 (265)
........ ++..+++++.|...+.+++..++. ........... ....+++++|...+.+.....+. ....+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (291)
T COG0457 130 LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL--LEALGRYEEALELLEKALKLNPDDDAEALLN 207 (291)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH--HHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence 33444444 899999999999999999776652 22111221111 22347899999999999999888 6888899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGDSE---DTLINNMVTAGRLG 211 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~~p---dtl~nl~~~~~~~G 211 (265)
++.++...+++++|...+..++...| ..+..++......|
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 99999999999999999999999854 45666666666444
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.56 E-value=0.56 Score=42.38 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=67.9
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
....+.+..+.|++.|+++.+-..-..-..++.|.+.... +++.+-|..+|+.....+|.++..+..-..-++..|+.+
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~ 87 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDIN 87 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHH
Confidence 4445566699999999999865444443344445554433 356667999999999999999988888888889999999
Q ss_pred HHHHHHHHHhcC
Q psy3174 184 EAWDLLQDTAGD 195 (265)
Q Consensus 184 EAe~~l~~al~~ 195 (265)
.|..++++++..
T Consensus 88 ~aR~lfer~i~~ 99 (280)
T PF05843_consen 88 NARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 209
>KOG4234|consensus
Probab=94.54 E-value=0.086 Score=45.96 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=54.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTP-----MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~-----~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
|.|.+|..-|.++.+.+|.++ .++.+.|+|.+++++|+.|...-.+|++++|. .|.--+.++..+.|+++++
T Consensus 109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeal 188 (271)
T KOG4234|consen 109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEAL 188 (271)
T ss_pred ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHH
Confidence 678888888888888888542 25667888888888888888888888888664 4555566777776666654
No 210
>KOG4234|consensus
Probab=94.54 E-value=0.33 Score=42.43 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=74.3
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCc------HHH-HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDEDH------TLT-QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~d~------~l~-~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
-+...|.+.+|.+-|..++++-|.- ++. +-|-+.+.+ ++++.|+.---+..+..|.....|-..|-+|-
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl----~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL----RKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh----hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 5677899999999999999987653 222 333444433 67999999888899999988888888999999
Q ss_pred HcCCHHHHHHHHHHHhcCCHHH
Q psy3174 178 AQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~~pdt 199 (265)
++.+|++|...|.+.++.+|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 9999999999999999986653
No 211
>KOG2796|consensus
Probab=94.41 E-value=0.26 Score=44.70 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH----hhcC--CCHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI----DKYG--STPMLVNA 171 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~----~~~p--~t~~lLn~ 171 (265)
++..+-+++.++.+-.-...++++.+-+ |..+...-+++.+.+-- |..+-|...|++.- .... ......-+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~--GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQI--GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 6778889999999999999999999977 55676666666666655 66888888888543 2222 23445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.|.+|+-+.+|.+|...+.+.+.. +|-..-|.+-|...+|+..+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 889999999999999999999988 4445669999999999988765
No 212
>KOG1070|consensus
Probab=94.34 E-value=1.1 Score=48.56 Aligned_cols=147 Identities=14% Similarity=0.061 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHH---------------------------
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK---DEDHTLTQLCSAWVHIA--------------------------- 142 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d~~l~~la~a~v~l~--------------------------- 142 (265)
|++-=.+.....-.+..+..+.|+++..+++.. -+.+-..++..||+|+-
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 554445555556667788899999999888772 23444445555555543
Q ss_pred ------hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcC
Q psy3174 143 ------NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLG 211 (265)
Q Consensus 143 ------~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~G 211 (265)
.-.+++++|-.+++.+..++..+..++...|..++.+.+-++|..+|.+||+- |-+++.-.+.+--..|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 22356778888888888999999999999999999999999999999999985 7788888888888888
Q ss_pred CCCcc---C----CCChhhhcH--------------HHHHHHHHHHHhh
Q psy3174 212 KGNEM---S----VSPPFLFRS--------------DETTATLDACGLQ 239 (265)
Q Consensus 212 k~~ea---~----p~hp~~~~~--------------~~~~~~FD~~~~~ 239 (265)
.++-. + ..||-=.++ ...+..|.|+++.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 87641 1 455432222 2367889998874
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.29 E-value=0.9 Score=44.41 Aligned_cols=145 Identities=13% Similarity=0.063 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHh-----------
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLID----------- 160 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~----------- 160 (265)
.+.+..-....+-.-+...+..-.+.=+++++++||-. .|||-|+... ....||..+|++..+
T Consensus 165 ~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCA-----dAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~ 239 (539)
T PF04184_consen 165 TDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCA-----DAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQF 239 (539)
T ss_pred CCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhh-----HHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhh
Confidence 34444444555666667777777788888888898877 6888777532 457888888888531
Q ss_pred --hcC---------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCccC----
Q psy3174 161 --KYG---------ST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE-----DTLINNMVTAGRLGKGNEMS---- 217 (265)
Q Consensus 161 --~~p---------~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p-----dtl~nl~~~~~~~Gk~~ea~---- 217 (265)
.++ ++ +.+--.+|.|.-++|+.+||.+++++.+..+| .+..||+.++..++...++-
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 111 11 22456789999999999999999999986532 26679999999999876532
Q ss_pred -------CCChhhhcHHHHHHHHHHHHhhcccc
Q psy3174 218 -------VSPPFLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 218 -------p~hp~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
|.... ..|-...-.|-+.+++|++.
T Consensus 320 kYdDi~lpkSAt-i~YTaALLkaRav~d~fs~e 351 (539)
T PF04184_consen 320 KYDDISLPKSAT-ICYTAALLKARAVGDKFSPE 351 (539)
T ss_pred HhccccCCchHH-HHHHHHHHHHHhhccccCch
Confidence 44332 23333333666677777654
No 214
>KOG1127|consensus
Probab=94.27 E-value=0.14 Score=53.49 Aligned_cols=89 Identities=15% Similarity=0.083 Sum_probs=76.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
++-.|+.-+++..|.-.++.++..+|.++ .+|+++. ...|+|.-|.+.|.++....|.+.....-.|+....
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~-----n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDY-----NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhH-----HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 55667778888888999999999999999 6676665 334889999999999999999998899999999999
Q ss_pred cCCHHHHHHHHHHHhcC
Q psy3174 179 QDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~ 195 (265)
.|+|.||.+.+...+..
T Consensus 643 ~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYA 659 (1238)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999998877654
No 215
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.11 E-value=1.3 Score=39.69 Aligned_cols=83 Identities=14% Similarity=0.055 Sum_probs=53.9
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
......+-++..++..+.-|+++.|.+.|+.+...-|-+.. +++.+++.+... +.+.+|...+++....||.++.
T Consensus 29 ~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~--~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 29 VYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN--GEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred ccCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCCCCC
Confidence 34567777777788888888888888888877765444433 345555555544 5678888888887777774432
Q ss_pred ---HHHHHHHH
Q psy3174 168 ---LVNAQVAV 175 (265)
Q Consensus 168 ---lLn~~A~~ 175 (265)
++...|.+
T Consensus 107 ~dY~~YlkgLs 117 (254)
T COG4105 107 ADYAYYLKGLS 117 (254)
T ss_pred hhHHHHHHHHH
Confidence 44444444
No 216
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=93.86 E-value=0.68 Score=36.24 Aligned_cols=77 Identities=18% Similarity=0.079 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q psy3174 133 QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLG 211 (265)
Q Consensus 133 ~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~G 211 (265)
+||+.-+ +++|.-..+||-.|.+-+.+.....-.+.--....+|.+|+|++| +...... .||+.--++-|.+++|
T Consensus 8 lLAElAL-~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a~klG 83 (116)
T PF09477_consen 8 LLAELAL-MATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCAWKLG 83 (116)
T ss_dssp HHHHHHH-HHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHHHHCT
T ss_pred HHHHHHH-HHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHHHhhc
Confidence 4444333 457778899999999888877542222333345578999999999 5566655 8888888888888888
Q ss_pred CC
Q psy3174 212 KG 213 (265)
Q Consensus 212 k~ 213 (265)
-.
T Consensus 84 L~ 85 (116)
T PF09477_consen 84 LA 85 (116)
T ss_dssp -H
T ss_pred cH
Confidence 64
No 217
>KOG1308|consensus
Probab=93.86 E-value=0.047 Score=50.76 Aligned_cols=109 Identities=15% Similarity=-0.015 Sum_probs=88.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g 180 (265)
+.-.+..|.++.|...+..+++++|++.+.. -+.+++.| .+...|+.-+.-.....|++...+-..+.++..+|
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl----~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL----KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeec----cCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 3445567889999999999999999987553 34444433 67999999999999999999888888899999999
Q ss_pred CHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCc
Q psy3174 181 KYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 181 ~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~e 215 (265)
+|++|...|..+.++ ++++=..+=.|--+.++-.+
T Consensus 197 ~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e 233 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEE 233 (377)
T ss_pred chHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhh
Confidence 999999999999998 77777777667666666543
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.74 E-value=2.6 Score=33.55 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH-------------HHHHHHHHHHH-------hccccHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL-------------TQLCSAWVHIA-------NNVDKLNEAFYTLQ 156 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l-------------~~la~a~v~l~-------~g~~~~~eA~~~~~ 156 (265)
|.....+......++...+...+.+++.+.....+ ..+...|+.+. ...|++++|....+
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 33444455566778899999999999885221111 11122222221 23467778888888
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 157 DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 157 el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.+...+|.+-.+.-.+-.++..+|+..+|...+.+.-.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888887766766777778888888888777776644
No 219
>KOG0545|consensus
Probab=93.26 E-value=0.59 Score=41.99 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHc-----------cCC-----CcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQD-----------KDE-----DHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~-----------~~~-----d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
..+.+--.+-=+.+.||+.+|..-|+.++- ++| |..++.|-.-|.......|.|-+++..-.++
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 344444455567788999999999998865 111 2233333222222222336788888888899
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHH
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdt 199 (265)
...+|.+...+.-.|-+|..-=+..||+..+..+|+.||..
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 99999999999999999999999999999999999998874
No 220
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.85 E-value=0.24 Score=30.39 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
..++..++.+|..+|++++|++.++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34566778888888888888888888876
No 221
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.66 E-value=0.16 Score=28.94 Aligned_cols=25 Identities=32% Similarity=0.205 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
.....+|.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3567889999999999999988763
No 222
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.54 E-value=0.97 Score=33.88 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINN 203 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl 203 (265)
.+-++|.++...|++++|...+++|+.. |...+...
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~a 83 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYA 83 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 4566899999999999999999999987 55555433
No 223
>KOG2053|consensus
Probab=92.52 E-value=2.3 Score=44.14 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=80.0
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE 184 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eE 184 (265)
=.+..+++..|-+...+.+.--|...-+..-.|++.+.. |++.||..+.+.+....|.+-..|--+-.||..+|++++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~--gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRL--GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHh--cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 345556778888888888887777666655567776655 778899988888888877777778788889999999999
Q ss_pred HHHHHHHHhcCCHH--HHHHHHHHHHHcCC
Q psy3174 185 AWDLLQDTAGDSED--TLINNMVTAGRLGK 212 (265)
Q Consensus 185 Ae~~l~~al~~~pd--tl~nl~~~~~~~Gk 212 (265)
|..+++++...+|. .+.++..++..-+.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHH
Confidence 99999999888444 66666666665553
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.20 E-value=4.6 Score=31.55 Aligned_cols=123 Identities=21% Similarity=0.116 Sum_probs=89.6
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC---CCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG---STPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p---~t~~l 168 (265)
.+.........+.++..++++..|.+.+......+++.........+. +....+++++|...|++.....| .....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG-ALYELGDYEEALELYEKALELDPELNELAEA 169 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCccchHHH
Confidence 345667777788889999999999999999999777663222222220 12234889999999999876555 23345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGDS----EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~~----pdtl~nl~~~~~~~Gk~~e 215 (265)
+...+..+...+++++|...+.+++... +....++..++...|+...
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence 5556666888999999999999999983 3457788888888885543
No 225
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.16 E-value=0.31 Score=26.68 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
.....++.++..+++++.|...++++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35667788999999999999999998887664
No 226
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.10 E-value=0.75 Score=31.18 Aligned_cols=36 Identities=6% Similarity=-0.048 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT 132 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~ 132 (265)
|+++.++..+.++|+++.|.+....+++++|++.-.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 788999999999999999999999999999998733
No 227
>KOG3364|consensus
Probab=92.02 E-value=0.96 Score=36.94 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=57.0
Q ss_pred CCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHh-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 126 DEDHTLTQLCSAWVHIANN-VDKLNEAFYTLQDLID-KYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g-~~~~~eA~~~~~el~~-~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+.-+.-++...||.-..+. ....++-..+++++.. .+|. .-.-+.-+|+.|.+.|+|++|..++.-.++.
T Consensus 28 ~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 28 SDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred ccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4556667888899855532 2678899999999996 6774 5557888999999999999999999999987
No 228
>KOG4648|consensus
Probab=91.98 E-value=0.54 Score=44.13 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=72.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g 180 (265)
+-.|.++|+|++|...|.+....+|-++++ +-|+||+.+ .++--|+.--.++....-.-...+...+.+...+|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~----K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ----KSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH----HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 448999999999999999999999976554 778888855 44666665555555444334567778888999999
Q ss_pred CHHHHHHHHHHHhcCCHHH
Q psy3174 181 KYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 181 ~~eEAe~~l~~al~~~pdt 199 (265)
+.+||....+.+|++.|.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 9999999999999996653
No 229
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.79 E-value=4.7 Score=35.01 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy3174 147 KLNEAFYTLQDLIDKYGS----TPMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 147 ~~~eA~~~~~el~~~~p~----t~~lLn~~A~~~~~~g~~eEAe 186 (265)
+.++|..++-...+..+. +|.++.++|.+++++|++++|.
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555444331 4666667777777777777664
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.48 E-value=3 Score=39.86 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
.+=...+-+|..+.-|+++.|++-|..|+. +|+--+.-|---|+ -++..|..+-|..+-++...+.|.-+...-..--
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyl-eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYL-EAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHH-HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 445667889999999999999999999965 22222222222233 3366688999999999999988854444434444
Q ss_pred HHHHcCCHHHHHHHHHHHhcC
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~ 195 (265)
..++.|+|+.|..++....+.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHH
Confidence 588999999999999876653
No 231
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.96 E-value=7.5 Score=33.76 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC-CCHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG-STPMLVNAQ 172 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p-~t~~lLn~~ 172 (265)
+..|.-..++..++.. .+.-+++......-.++++ .|..... -.-++|...|-++-...- .|+.+...+
T Consensus 78 ~~~e~k~~R~~a~~~s--~~~l~~L~~~tk~S~dP~l------lYy~Wsr--~~d~~A~~~fL~~E~~~~l~t~elq~aL 147 (203)
T PF11207_consen 78 KQKERKTDRFRALLHS--YQELERLQEETKNSQDPYL------LYYHWSR--FGDQEALRRFLQLEGTPELETAELQYAL 147 (203)
T ss_pred chHhHHHHHHHHHHHH--HHHHHHHHHHHccCCCccH------HHHHhhc--cCcHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3445555555555543 3444445555544555555 2333333 235789888888866533 789999988
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD-------SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~-------~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|.-|. ..+-++|..+|.++|+. ||+++..|+.++..+|+...+
T Consensus 148 AtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 148 ATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 87776 78899999999999987 899999999999999987654
No 232
>KOG1130|consensus
Probab=90.94 E-value=1.7 Score=41.83 Aligned_cols=138 Identities=16% Similarity=0.042 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH------HHHHHHHHHHHhccccHHHHHHHHHH-------HHhhcCCC
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTL------TQLCSAWVHIANNVDKLNEAFYTLQD-------LIDKYGST 165 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l------~~la~a~v~l~~g~~~~~eA~~~~~e-------l~~~~p~t 165 (265)
+++-+.-++++|+.......|+.+++.+-++.- .||..||..| +.|++|..+..- ++++-+.
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL----~DY~kAl~yH~hDltlar~lgdklGE- 94 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYL----KDYEKALKYHTHDLTLARLLGDKLGE- 94 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhH----hhHHHHHhhhhhhHHHHHHhcchhcc-
Confidence 345567789999999999999999998876533 3677777766 458888776543 2223221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCccC-CCChhhhcHHHHHHHHHH
Q psy3174 166 PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---------SEDTLINNMVTAGRLGKGNEMS-VSPPFLFRSDETTATLDA 235 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---------~pdtl~nl~~~~~~~Gk~~ea~-p~hp~~~~~~~~~~~FD~ 235 (265)
..+--+++.++--+|+|+||.-.-.+-|.. ..-.+.|++.|+...||-..-. |..- -+--.++...|.+
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~-g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK-GAFNAEVTSALEN 173 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc-ccccHHHHHHHHH
Confidence 223345778899999999999887776664 3447899999999999965322 3221 2223455566666
Q ss_pred HHhhccc
Q psy3174 236 CGLQSNS 242 (265)
Q Consensus 236 ~~~~~~~ 242 (265)
.+.=|.-
T Consensus 174 Av~fy~e 180 (639)
T KOG1130|consen 174 AVKFYME 180 (639)
T ss_pred HHHHHHH
Confidence 6665553
No 233
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.74 E-value=0.65 Score=37.23 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHh---hcCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 130 TLTQLCSAWVHIANNV-----DKLNEAFYTLQDLID---KYGS---------TPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 130 ~l~~la~a~v~l~~g~-----~~~~eA~~~~~el~~---~~p~---------t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
+|.+.+.+|..|..++ +-|.+|...++...+ +-|. +.....+++-++..+|+|+|+...-.++
T Consensus 2 PLkeVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 2 PLKEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5678889999888665 556777777777643 3332 3445778889999999999999988888
Q ss_pred hcC-------CHH-------HHHHHHHHHHHcCCCCccC
Q psy3174 193 AGD-------SED-------TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 193 l~~-------~pd-------tl~nl~~~~~~~Gk~~ea~ 217 (265)
|-- |.| +.++-++...-+|+++|++
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~ 120 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEAL 120 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHH
Confidence 753 444 3457788888899987765
No 234
>KOG1915|consensus
Probab=90.68 E-value=4.7 Score=39.54 Aligned_cols=131 Identities=13% Similarity=0.095 Sum_probs=81.6
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcC-CCHHHHHHHHHH--HH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYG-STPMLVNAQVAV--LI 177 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p-~t~~lLn~~A~~--~~ 177 (265)
-+-++++.+|--+++|.+.++++|.+. .+|...+ +.-|..+.|-.+|+=+.+... ++|.+| ..+.+ -+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c-----~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell-wkaYIdFEi 518 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENC-----YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL-WKAYIDFEI 518 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhh-----HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH-HHHhhhhhh
Confidence 345667788888899999999998887 6777766 333678888888887777644 566544 33333 45
Q ss_pred HcCCHHHHHHHHHHHhcC--CHHHHHHHHHH--HHHcCCCCccCCCChh--hhcHHHHHHHHHHHHhhcc
Q psy3174 178 AQDKYEEAWDLLQDTAGD--SEDTLINNMVT--AGRLGKGNEMSVSPPF--LFRSDETTATLDACGLQSN 241 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~--~pdtl~nl~~~--~~~~Gk~~ea~p~hp~--~~~~~~~~~~FD~~~~~~~ 241 (265)
..|.++.|..++++.|++ |--+.+..+.. +...|+..+.. +..- -.+.......||++-..|.
T Consensus 519 ~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~-~~~e~~~~~~~~AR~iferAn~~~k 587 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDL-AELEITDENIKRARKIFERANTYLK 587 (677)
T ss_pred hcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccch-hhhhcchhHHHHHHHHHHHHHHHHH
Confidence 788999999999999888 44455444333 22333322111 0000 1123445667777666554
No 235
>KOG4555|consensus
Probab=90.67 E-value=5.9 Score=32.51 Aligned_cols=87 Identities=15% Similarity=-0.007 Sum_probs=69.5
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHhhcCC-CH---HHHHHHHHHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIAN---NVDKLNEAFYTLQDLIDKYGS-TP---MLVNAQVAVL 176 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~---g~~~~~eA~~~~~el~~~~p~-t~---~lLn~~A~~~ 176 (265)
.++-.-|++|.|...|.+++.+.|... .+|.|-++ -+++.++|.--..+..+..++ |- ......|+++
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~ra-----SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERA-----SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccch-----HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 366678999999999999999888766 45555441 347899999999999888663 32 2677889999
Q ss_pred HHcCCHHHHHHHHHHHhcC
Q psy3174 177 IAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~ 195 (265)
..+|+-+.|...+..|.++
T Consensus 126 Rl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHhCchHHHHHhHHHHHHh
Confidence 9999999999999988775
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.65 E-value=2.3 Score=33.82 Aligned_cols=63 Identities=13% Similarity=-0.051 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
-+.++-.++..+...|+++.|.+.+++++..+|-+--.......... ..|+..+|...|+++.
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~--~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA--AQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH--HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HCcCHHHHHHHHHHHH
Confidence 44566677778999999999999999999999977643333323322 4488999999999975
No 237
>KOG2471|consensus
Probab=90.24 E-value=1.6 Score=42.77 Aligned_cols=120 Identities=9% Similarity=-0.054 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHH---HHHHHHHHHH---hccccHHHHHHHHHHHHh-----
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLT---QLCSAWVHIA---NNVDKLNEAFYTLQDLID----- 160 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~---~la~a~v~l~---~g~~~~~eA~~~~~el~~----- 160 (265)
.++.+.+++..|.+..+|++..|-|.+...--.. +.-++| .-...|.|+. ..-+.|+-+..+|.++.+
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999987763322 233344 2334566665 222779988888888764
Q ss_pred ----hcC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 161 ----KYG---------STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 161 ----~~p---------~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
.-| .+-.++.+.|+.+++.||.-+|-..+.++... +|-++--|+.|+.+-.+
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 011 23457888999999999999999999999876 99999999988877443
No 238
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.65 E-value=0.33 Score=32.91 Aligned_cols=31 Identities=13% Similarity=-0.026 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+..+|+.+.++|+|++|......+|+.+|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4667999999999999999999999998665
No 239
>KOG2610|consensus
Probab=89.55 E-value=17 Score=34.28 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=11.0
Q ss_pred hccHHHHHHHHhhcccCChhh
Q psy3174 21 LGNYQQCIKEGQRLKATDPKV 41 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~~~~~ 41 (265)
+|++..|+. ++.+++|+.
T Consensus 47 Lggi~a~a~---kL~ssDP~~ 64 (491)
T KOG2610|consen 47 LGGILASAE---KLSSSDPEA 64 (491)
T ss_pred hhhHHHHHH---HHhcCChHH
Confidence 566655555 466677753
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.54 E-value=0.57 Score=28.59 Aligned_cols=27 Identities=7% Similarity=-0.178 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
+..++.+|..+|+++.|...|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999996543
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.41 E-value=0.29 Score=29.79 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=24.1
Q ss_pred HHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 189 LQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 189 l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+++|++. |++.+.|++.++...|+..++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 6788888 777999999999999998765
No 242
>KOG3617|consensus
Probab=89.32 E-value=14 Score=38.82 Aligned_cols=95 Identities=20% Similarity=0.101 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc----------CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH---
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK----------DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI--- 159 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~----------~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~--- 159 (265)
.++.-+-+.++..|...|++-+|.+-|.+++.. |=++-|.++| +..|+...-+|-.+|+|.+
T Consensus 964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla-----l~s~~~d~v~aArYyEe~g~~~ 1038 (1416)
T KOG3617|consen 964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA-----LMSGGSDLVSAARYYEELGGYA 1038 (1416)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-----hhcCchhHHHHHHHHHHcchhh
Confidence 678888899999999999999999999888763 2233333333 2334444444444555421
Q ss_pred ----------------------------------hhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 160 ----------------------------------DKYG-STPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 160 ----------------------------------~~~p-~t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
+..| ++|.+++--|.-+..-..|++|..+|..+
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444 57888888888888888899988877644
No 243
>KOG1586|consensus
Probab=89.02 E-value=1.8 Score=38.69 Aligned_cols=100 Identities=9% Similarity=0.018 Sum_probs=72.4
Q ss_pred HHhccccHHHHHHHHHHHHhhcC----CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHhcC----CHH----HHHHHHHH
Q psy3174 141 IANNVDKLNEAFYTLQDLIDKYG----STPM--LVNAQVAVLIAQDKYEEAWDLLQDTAGD----SED----TLINNMVT 206 (265)
Q Consensus 141 l~~g~~~~~eA~~~~~el~~~~p----~t~~--lLn~~A~~~~~~g~~eEAe~~l~~al~~----~pd----tl~nl~~~ 206 (265)
+..|+++++||-.+|.+....+- |+.. ..--.|.+|++.|.-.+|-..+.+|..- +|. .|.+-|.+
T Consensus 23 lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI 102 (288)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 55677899999999999876543 4433 4556788999999988888888888753 776 67788899
Q ss_pred HHHcCCCCccCCCChhhhcHHHHH-HHHHHHHhhc
Q psy3174 207 AGRLGKGNEMSVSPPFLFRSDETT-ATLDACGLQS 240 (265)
Q Consensus 207 ~~~~Gk~~ea~p~hp~~~~~~~~~-~~FD~~~~~~ 240 (265)
+..+|+..-+...|--+.++-+.+ ..|......|
T Consensus 103 yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~Y 137 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHY 137 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHH
Confidence 999999876666666666665544 4444444444
No 244
>KOG1915|consensus
Probab=88.50 E-value=6.8 Score=38.49 Aligned_cols=117 Identities=9% Similarity=-0.006 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
...-+..+.++-.+++.+++.|++++-.++-..|.+-+ --+|+.+-..-+.++.--.+|++..+-.|.+...+..-|
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl---Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL---FKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH---HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 44456778888999999999999999999998887753 357777765557799999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC----CHHHHH-HHHHHHHHcCCC
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD----SEDTLI-NNMVTAGRLGKG 213 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~----~pdtl~-nl~~~~~~~Gk~ 213 (265)
-.-..+|+++.|..++.-|++. -|++|. ..|..-...|..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 9999999999999999999987 788765 334444444443
No 245
>KOG1586|consensus
Probab=88.45 E-value=7.4 Score=34.89 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
..-..|+-..+.||-.|||+--|-+....+-+
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaE 121 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAE 121 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHH
Confidence 45567888889999999998887775555433
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.27 E-value=0.52 Score=41.70 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
-+++-++-.|-..|-.++|+-.+.+++.+.|+-+-.-.-++...+ -.|+++-|+..|+-+.+..|..-...-+.|..+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~--~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT--QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH--hcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 456667778888888999999999999999998744333332222 337899999999999999997555555678888
Q ss_pred HHcCCHHHHHHHHHHHhcCCHH
Q psy3174 177 IAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~~pd 198 (265)
.--|||+-|.+.+.+-.+.||.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCC
Confidence 8999999999999888877443
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.18 E-value=11 Score=35.68 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC----C--cHHHHHHHHHHHHHhccccHHHHHHHHHH-HHhhcCCCHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDE----D--HTLTQLCSAWVHIANNVDKLNEAFYTLQD-LIDKYGSTPM 167 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~----d--~~l~~la~a~v~l~~g~~~~~eA~~~~~e-l~~~~p~t~~ 167 (265)
+.+.+..+-..|....++|...+.+..+..+.. + ++-.+.|.|.. -....|+.++|..++.+ +....+.++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 444455555678888888888888888877621 1 22224444433 12224788888888888 4444555555
Q ss_pred HHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCC
Q psy3174 168 LVNAQVAVLIA---------QDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGN 214 (265)
Q Consensus 168 lLn~~A~~~~~---------~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ 214 (265)
.+-..|-+|-. ...+++|...+.++++.+|+ .-+|++++....|...
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcc
Confidence 54444444321 23477888888888888777 4578888888888754
No 248
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.90 E-value=0.77 Score=26.01 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELK 120 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~ 120 (265)
...+.++.++...||+++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788899999999999998875
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.61 E-value=5.6 Score=39.09 Aligned_cols=100 Identities=8% Similarity=-0.007 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-cH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhh-cCCCHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDED-HT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDK-YGSTPMLVN 170 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~-~p~t~~lLn 170 (265)
+-+...+++|+-++||.++|.|.++.+++..|. +. --+|.++++ ..++|.++-.+..+.-+. -|.+..+-.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL----elq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL----ELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH----hcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 455677899999999999999999999875543 22 224444444 336788888888776443 344443333
Q ss_pred HHHHHHH-------------HcCC---HHHHHHHHHHHhcCCHHH
Q psy3174 171 AQVAVLI-------------AQDK---YEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 171 ~~A~~~~-------------~~g~---~eEAe~~l~~al~~~pdt 199 (265)
..|..-. +.|- -..|.+.+.+|.+.||++
T Consensus 335 TaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 335 TAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 3332221 1221 123567888888876653
No 250
>KOG2610|consensus
Probab=87.41 E-value=4.1 Score=38.34 Aligned_cols=94 Identities=13% Similarity=0.005 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC--CCHHH--HHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG--STPML--VNAQV 173 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~l--Ln~~A 173 (265)
..-+.+..+...|-++.||+.-++++++++-+.=+.=|.+-|-=.. +|.+|+..+.++-.+.-- +.... +=..|
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~--~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMN--GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhc--chhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 3445677888899999999999999999998876666666663323 789999999888765432 32222 34678
Q ss_pred HHHHHcCCHHHHHHHHHHHh
Q psy3174 174 AVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al 193 (265)
++|+.-++|+.|++++..-+
T Consensus 255 l~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HhhhcccchhHHHHHHHHHH
Confidence 99999999999999997543
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.16 E-value=17 Score=30.59 Aligned_cols=99 Identities=16% Similarity=0.076 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh---hcC-CC--HHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID---KYG-ST--PMLV 169 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~---~~p-~t--~~lL 169 (265)
.++-.++.-|+++|+++.|.+.|.++.+-. .......+...++.++--.+++..+.....++.. ..+ |+ ..+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566779999999999999999997742 2223334444444444333667777777766543 222 22 2255
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
...|..++.+|+|.+|-..+.++..-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 67788899999999999999888654
No 252
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.72 E-value=15 Score=32.06 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcc-----ccHHHHHHHHHHHHhh--cCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CH
Q psy3174 133 QLCSAWVHIANNV-----DKLNEAFYTLQDLIDK--YGS----TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----SE 197 (265)
Q Consensus 133 ~la~a~v~l~~g~-----~~~~eA~~~~~el~~~--~p~----t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----~p 197 (265)
-|-.||+.--.|. .=++.|...|++..+. +|. ...++..+|.++.+.|+++||...+.+++.. .|
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~ 200 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKE 200 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCc
Confidence 3445888554433 1245688888887654 432 3458889999999999999999999999986 33
Q ss_pred HHHHHHHHH
Q psy3174 198 DTLINNMVT 206 (265)
Q Consensus 198 dtl~nl~~~ 206 (265)
-.+.+++.=
T Consensus 201 ~~l~~~AR~ 209 (214)
T PF09986_consen 201 PKLKDMARD 209 (214)
T ss_pred HHHHHHHHH
Confidence 356666543
No 253
>KOG4642|consensus
Probab=86.12 E-value=3.6 Score=36.91 Aligned_cols=80 Identities=13% Similarity=-0.001 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3174 110 YRNDLALKELKVMQDKDEDHT--LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWD 187 (265)
Q Consensus 110 ~r~d~Aek~l~~~~~~~~d~~--l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~ 187 (265)
.|++.|...|.+++.++|--+ -++-|+-++.+ .+++-+..-=+...+..|........++.+.++...|++|..
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~----~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKL----KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh----hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 345555555555555444322 12233323221 334444444444444445445555555555555555555555
Q ss_pred HHHHHh
Q psy3174 188 LLQDTA 193 (265)
Q Consensus 188 ~l~~al 193 (265)
.|++|+
T Consensus 100 ~Lqra~ 105 (284)
T KOG4642|consen 100 VLQRAY 105 (284)
T ss_pred HHHHHH
Confidence 555553
No 254
>PF12854 PPR_1: PPR repeat
Probab=85.89 E-value=1.6 Score=26.43 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVM 122 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~ 122 (265)
.-....++..|++.||+|+|.+.+.+|
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 345567788999999999999999887
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.79 E-value=19 Score=35.17 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHH-HHHHHH---HhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLC-SAWVHI---ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la-~a~v~l---~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
-++.-.+.++-+++++++|++++.++-+-..+++.. +- +.+-+. +--.++++.=....-++-+..|.++.+.-=.
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~-lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFL-LKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHH-HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 455667889999999999999999997755555321 11 111111 1111556666666777788899888877789
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC----------------CHH-HHH-HHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD----------------SED-TLI-NNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~----------------~pd-tl~-nl~~~~~~~Gk~~ea~ 217 (265)
|+...++|+|.+|...+.-..+. -+| .+. ..+-|...+|+..|..
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999988755543 233 233 4578899999987743
No 256
>KOG0376|consensus
Probab=85.75 E-value=2.4 Score=41.13 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
.....+--.+.-+.+|.|...|.++++++|...+. .-|.+++. .+.+..|..-..++.+..|.-...+.-.|.+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGALHDALKAIELDPTYIKAYVRRGTA 81 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHHHHHHhhhhcCchhhheeeeccHH
Confidence 34444556777889999999999999999965433 33445553 2678888888888888888877777788889
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
.|..+++-+|...|+..... +|++..-
T Consensus 82 ~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHhHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 99999999999999988877 6665543
No 257
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.66 E-value=3.2 Score=36.81 Aligned_cols=119 Identities=13% Similarity=-0.005 Sum_probs=82.3
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH-HHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM-LVN 170 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~-lLn 170 (265)
.|+-++....++.-+..-|++|.|-..+..++++||..--+-+--+ +++. -+||++-|-.-|.+..+..|.+|. .|
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~L- 171 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALY-YGGRYKLAQDDLLAFYQDDPNDPFRSL- 171 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeee-ecCchHhhHHHHHHHHhcCCCChHHHH-
Confidence 5999999999999999999999999999999999997643322221 1122 248999999999999999998876 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~~e 215 (265)
.+ .+.-+.-+..+|..-+.+=.+. +.+-.-.- .|-..+||-.+
T Consensus 172 WL-Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~-iV~~yLgkiS~ 215 (297)
T COG4785 172 WL-YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWN-IVEFYLGKISE 215 (297)
T ss_pred HH-HHHHhhCCHHHHHHHHHHHHHhccHhhhhHH-HHHHHHhhccH
Confidence 11 1233445666777666555444 55544332 35566777654
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.60 E-value=12 Score=36.22 Aligned_cols=85 Identities=15% Similarity=0.017 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
.++.+..-.++...+.+|+++.|++.|++..++ +- +.+++...|. .+.=.++- ++....++ .|..
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~---~~-----L~lLy~~~g~--~~~L~kl~-~~a~~~~~----~n~a 408 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF---SG-----LLLLYSSTGD--REKLSKLA-KIAEERGD----INIA 408 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H---HH-----HHHHHHHCT---HHHHHHHH-HHHHHTT-----HHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc---cc-----cHHHHHHhCC--HHHHHHHH-HHHHHccC----HHHH
Confidence 456777778888888888888888888886431 11 2345555532 22222222 23333332 3444
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~a 192 (265)
..|++..|++++-.++|.++
T Consensus 409 f~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHc
Confidence 45677788888887777655
No 259
>PF12854 PPR_1: PPR repeat
Probab=85.41 E-value=2.2 Score=25.73 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
.+...+|.+-..+.+.|++++|.+++.+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4566788888899999999999998865
No 260
>KOG2047|consensus
Probab=85.23 E-value=26 Score=35.70 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-----HHHHHHHHHHHHH-hccccH--HHHHHHHHHHHhhcCCCH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH-----TLTQLCSAWVHIA-NNVDKL--NEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-----~l~~la~a~v~l~-~g~~~~--~eA~~~~~el~~~~p~t~ 166 (265)
+|+..--.+-.+...+|.|+|.+.|..++..+.-. +--|+-+-..++. +...+. -.--.+++....++++-.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~ 247 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQL 247 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHH
Confidence 44555555668888999999999999886532211 1112322222222 222222 234557777778888744
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 -MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 -~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.++.++|.-|++-|+++.|.+++.+++..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 48999999999999999999999999986
No 261
>PF13041 PPR_2: PPR repeat family
Probab=84.93 E-value=4 Score=26.38 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..+|.+-..+.+.|++++|.+++++-.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 35555556667777777777777666655
No 262
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.71 E-value=3.8 Score=26.61 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
+-++.+|..||+.+.|++++.++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4578899999999999999999985
No 263
>KOG4648|consensus
Probab=84.13 E-value=1.5 Score=41.25 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCccC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE---DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p---dtl~nl~~~~~~~Gk~~ea~ 217 (265)
+|+|+||+--|-.....+|.++....+.|.+|+++.+|.-|+..-..|+.+|- -...--+.....+|+..|+-
T Consensus 110 QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 48999999999999999999999999999999999999999999999888732 23445556666677766654
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=17 Score=33.47 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
|++.+|...|..+.+..|.+..+..++|.|++..|+.++|+.+|..
T Consensus 148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 4555555556555555555555555555566666666665555543
No 265
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.53 E-value=2.3 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+|.+|+.+|+.+.|.++|++++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 5899999999999999999999965
No 266
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=82.42 E-value=9.9 Score=34.24 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=56.2
Q ss_pred HHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 140 HIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA-QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 140 ~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~-~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
++....+..+.|-.+|.++....+.+..++...|..-.+ .++.+-|..+++.++.. +++.+...+......|+...
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~ 88 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHH
Confidence 334444669999999999985545577788888888777 45555599999999987 88888888888888887654
No 267
>KOG1550|consensus
Probab=82.18 E-value=8.6 Score=38.26 Aligned_cols=95 Identities=18% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHh--c-cccHHHHHHHHHHHHhh------cCCCHHHHHHHHHHHHHcC----
Q psy3174 114 LALKELKVMQDKDEDHTLTQLCSAWVHIAN--N-VDKLNEAFYTLQDLIDK------YGSTPMLVNAQVAVLIAQD---- 180 (265)
Q Consensus 114 ~Aek~l~~~~~~~~d~~l~~la~a~v~l~~--g-~~~~~eA~~~~~el~~~------~p~t~~lLn~~A~~~~~~g---- 180 (265)
.|.+.++.+ .+..++..+...+++.+.. | ..+.+.|+.+|+.+... .+ .+...+++|.|+++..
T Consensus 230 ~a~~~~~~~--a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 230 EAFKYYREA--AKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred HHHHHHHHH--HhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCcc
Confidence 344444444 2333444444444443332 0 14455555555555431 11 2224445555555532
Q ss_pred -CHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q psy3174 181 -KYEEAWDLLQDTAGD-SEDTLINNMVTAGRLG 211 (265)
Q Consensus 181 -~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~G 211 (265)
+++.|..++.++.+. +|+..++++++...-.
T Consensus 307 ~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNPDAQYLLGVLYETGT 339 (552)
T ss_pred ccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC
Confidence 344455555555555 5555555555444433
No 268
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.01 E-value=72 Score=33.60 Aligned_cols=118 Identities=9% Similarity=-0.060 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-CC-C-cHHH-HHHHHHHHHH----hccccHHHHHHHHHHHHhhcCC
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK-DE-D-HTLT-QLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~-~~-d-~~l~-~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~ 164 (265)
..+++++.+.+-......|+++|+.++.++-.. .+ + .... .+| .|..+. -+.+++++|..+-++..+.-|.
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a-e~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA-EFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 678899999999999999999999999888652 22 1 1111 122 122222 4558899999999998766552
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-------CHHHHHHH--HHHHHHcC
Q psy3174 165 -----TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-------SEDTLINN--MVTAGRLG 211 (265)
Q Consensus 165 -----t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-------~pdtl~nl--~~~~~~~G 211 (265)
-...+..++.+++-+|++++|..+.+++.+. +-+.++.+ ..++..+|
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 3446778899999999999999999999886 22333333 44556677
No 269
>KOG1585|consensus
Probab=81.85 E-value=25 Score=31.83 Aligned_cols=122 Identities=20% Similarity=0.167 Sum_probs=74.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccC----CCcHHH----HHHHHHHHHHhccccHHHHHHHHHHHH------hhcCCCHH
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQDKD----EDHTLT----QLCSAWVHIANNVDKLNEAFYTLQDLI------DKYGSTPM 167 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~~~----~d~~l~----~la~a~v~l~~g~~~~~eA~~~~~el~------~~~p~t~~ 167 (265)
.+--.+...++|+|.++|++.+++= .++.-. +.+..+| ..+++.||-..|.+.+ ..+|+-..
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV----rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV----RLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh----hhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 3344556678899999998887741 122211 2222222 3367888777777643 33444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC----CHH---HHHHHHHHHHHcCCCCccC--CCChhhhcHHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD----SED---TLINNMVTAGRLGKGNEMS--VSPPFLFRSDE 228 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~----~pd---tl~nl~~~~~~~Gk~~ea~--p~hp~~~~~~~ 228 (265)
...++-.+|+...+|-.|+.+++..-+. .|+ ++.||+..+. .|.+++.. -+.|.+.++..
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~sp~~r~MDn 260 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLSSPTVRNMDN 260 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHcChHhhhhhH
Confidence 5666667788888999999999997766 333 7788876543 34433322 55666666543
No 270
>PRK10941 hypothetical protein; Provisional
Probab=81.19 E-value=19 Score=32.57 Aligned_cols=58 Identities=10% Similarity=-0.010 Sum_probs=49.5
Q ss_pred hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHH
Q psy3174 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTL 200 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl 200 (265)
...++++.|....+-+....|++|.-.--.|.++.++|.+..|...|+.-++. +|++.
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 35588999999999999999999987778899999999999999999988887 55543
No 271
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.15 E-value=8 Score=28.91 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=26.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
..|++++..+.++..+...|+++.|...+-.++..+++
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34677788888888888888888888888877776543
No 272
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.78 E-value=28 Score=34.93 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=76.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc----C------CCc----------------HHHHHHHHHHHHHhccccHHHHHHH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDK----D------EDH----------------TLTQLCSAWVHIANNVDKLNEAFYT 154 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~----~------~d~----------------~l~~la~a~v~l~~g~~~~~eA~~~ 154 (265)
+.+.+.+.-++.+.|+|.+.++++. . +.. ..+....+|.++.. +++..|...
T Consensus 306 lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~--~~~~~a~~~ 383 (608)
T PF10345_consen 306 LSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR--GDWSKATQE 383 (608)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC--cCHHHHHHH
Confidence 3455667777787888777777652 1 111 11234557777767 568888888
Q ss_pred HHHHHhh---cCC------CHHHHHHHHHHHHHcCCHHHHHHHHH-------HHhc-C--CHH--HH--HHHHHHHHHcC
Q psy3174 155 LQDLIDK---YGS------TPMLVNAQVAVLIAQDKYEEAWDLLQ-------DTAG-D--SED--TL--INNMVTAGRLG 211 (265)
Q Consensus 155 ~~el~~~---~p~------t~~lLn~~A~~~~~~g~~eEAe~~l~-------~al~-~--~pd--tl--~nl~~~~~~~G 211 (265)
.+++.+. .|. .+.+....|+.+...|+.+.|+..+. +... . +.| ++ .|++.+....+
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence 8887654 232 47788899999999999999999998 3333 3 556 23 47788887777
Q ss_pred CCC
Q psy3174 212 KGN 214 (265)
Q Consensus 212 k~~ 214 (265)
...
T Consensus 464 ~~~ 466 (608)
T PF10345_consen 464 SRD 466 (608)
T ss_pred ccc
Confidence 643
No 273
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.07 E-value=9.2 Score=29.76 Aligned_cols=71 Identities=20% Similarity=0.054 Sum_probs=41.5
Q ss_pred HhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk~~ 214 (265)
.+|.-..+||..|-+-+.......-.+---....+|-+|+|++|..+.+.. -.||+.-.++-|.|++|-..
T Consensus 15 gTG~HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~--~~pdlepw~ALce~rlGl~s 85 (115)
T TIGR02508 15 GTGHHCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL--CYPDLEPWLALCEWRLGLGS 85 (115)
T ss_pred HccchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC--CCchHHHHHHHHHHhhccHH
Confidence 356667777777776665543221111112233577778887776554332 17777777777777777543
No 274
>KOG2396|consensus
Probab=79.97 E-value=9.1 Score=37.67 Aligned_cols=72 Identities=13% Similarity=0.031 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----hccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
++++-+.+..+.-.-+.+-+-.-.++|.+|+..-|+++ ..||..+ .-+.+.+.|..+|..-.+.+|++|.+
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~-----dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP-----DLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc-----hhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 44444444444333333335555555555555555544 3444443 11122445555555555555555544
Q ss_pred H
Q psy3174 169 V 169 (265)
Q Consensus 169 L 169 (265)
+
T Consensus 177 w 177 (568)
T KOG2396|consen 177 W 177 (568)
T ss_pred H
Confidence 4
No 275
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=79.93 E-value=32 Score=32.70 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=61.9
Q ss_pred CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh----cCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcC----C
Q psy3174 128 DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK----YGSTPMLVNAQVAVLIA---QDKYEEAWDLLQDTAGD----S 196 (265)
Q Consensus 128 d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~----~p~t~~lLn~~A~~~~~---~g~~eEAe~~l~~al~~----~ 196 (265)
.+++.++-.+|-.+ ..|+.=..+++.+... .+.++.+--..|.++-+ .|+.++|..++..++.. +
T Consensus 141 ~div~~lllSyRdi----qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 141 PDIVINLLLSYRDI----QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD 216 (374)
T ss_pred hhHHHHHHHHhhhh----hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC
Confidence 35666777777755 4588888888888765 45688888888999999 99999999999997765 9
Q ss_pred HHHHHHHHHHHHH
Q psy3174 197 EDTLINNMVTAGR 209 (265)
Q Consensus 197 pdtl~nl~~~~~~ 209 (265)
||++.-++.++-.
T Consensus 217 ~d~~gL~GRIyKD 229 (374)
T PF13281_consen 217 PDTLGLLGRIYKD 229 (374)
T ss_pred hHHHHHHHHHHHH
Confidence 9999877776644
No 276
>KOG1070|consensus
Probab=78.96 E-value=80 Score=35.15 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=89.6
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHH--HHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCS--AWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~--a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
++....+.+.+.+..++..|.-..|+..++++++.-|.+--..+-. |-+-+.. |..+.+..+|+.+...||.-..+
T Consensus 1559 KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~--GDaeRGRtlfEgll~ayPKRtDl 1636 (1710)
T KOG1070|consen 1559 KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY--GDAERGRTLFEGLLSAYPKRTDL 1636 (1710)
T ss_pred HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc--CCchhhHHHHHHHHhhCccchhH
Confidence 4578999999999999999999999999999999766521112222 2333334 66888888999999999988888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC--CHH---HHHHHHHHHH
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD--SED---TLINNMVTAG 208 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~--~pd---tl~nl~~~~~ 208 (265)
++-....-+.+|..+-+..++++++++ .|. .++++---+.
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 988888899999999999999999987 332 5555533333
No 277
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=78.86 E-value=26 Score=27.85 Aligned_cols=96 Identities=14% Similarity=-0.075 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC--CCHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG--STPMLVNAQV 173 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~lLn~~A 173 (265)
-|.....++++-..|+.+..++.++++..++.+.... + +. .....| .|..+|...+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~-~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------E-GD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------c-Cc----------cCCCCCCCCCHHHHHHHH
Confidence 3666777888999999999999999986666554311 0 00 222233 4677999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCC
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~ 213 (265)
.++...|++..|..++....+. ..++..+|..-+..+-++
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999888776 656666776655555543
No 278
>KOG1464|consensus
Probab=78.08 E-value=57 Score=30.09 Aligned_cols=183 Identities=14% Similarity=0.172 Sum_probs=91.7
Q ss_pred HHHHHhhhhc------cHHHHHHHHhhcccCChh---hhhhHHHHHHHHHHcccChhHHhhhc------------CChHH
Q psy3174 13 FDVRNSYYLG------NYQQCIKEGQRLKATDPK---VLLEKDFYVCRSYLAQKKYKVVLEEK------------LPEEL 71 (265)
Q Consensus 13 f~vr~~fy~G------~Y~~~i~~~~~~~~~~~~---~~~e~~~~~~Raylalg~~~~~l~ei------------~~~~l 71 (265)
.++.|+||.. .-..|+..++++....|+ -...+.--+...+..+|+|...+... .+-.-
T Consensus 26 VDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE 105 (440)
T KOG1464|consen 26 VDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE 105 (440)
T ss_pred cchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence 5788999864 234455555544433333 23444444567788888887544321 12223
Q ss_pred HHHHHHHHHhcCCCcCcc--cccCCCHH-------------HHHHHHHHHHHcCChHHHHHHHHHHHcc-----CCCc--
Q psy3174 72 SCIKVLAEYLSIPSKNGS--SNFGTHLE-------------INALKIHTYLTMYRNDLALKELKVMQDK-----DEDH-- 129 (265)
Q Consensus 72 ~~~~~~A~~l~~~~~~e~--~~~~~~lE-------------~~al~v~~~l~~~r~d~Aek~l~~~~~~-----~~d~-- 129 (265)
+.+..+-+|.+...+-.- .-+..+++ --.-++.+|+..+.+..-+|++++.-.- ++|+
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k 185 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK 185 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh
Confidence 344445555543221100 00001111 1122355666677777777777776441 2232
Q ss_pred HHHHHHHHH---HHHHhccccHHHHHHHHHHHHhhcC--CCHHHH----HHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 130 TLTQLCSAW---VHIANNVDKLNEAFYTLQDLIDKYG--STPMLV----NAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 130 ~l~~la~a~---v~l~~g~~~~~eA~~~~~el~~~~p--~t~~lL----n~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
--+||-+.| +.+.+.+.+...-..+|++....-+ ..|.++ -+-|-.|++.|+|++|-..+-+|+.-
T Consensus 186 KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 186 KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 223444433 3333455555555566666543322 233333 33345578888888888777777753
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.76 E-value=41 Score=31.69 Aligned_cols=113 Identities=14% Similarity=-0.028 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-cHHHHHHH-HHHHHHhccccHHHHHHHHHHHHhhcC-----CC
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED-HTLTQLCS-AWVHIANNVDKLNEAFYTLQDLIDKYG-----ST 165 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~~l~~la~-a~v~l~~g~~~~~eA~~~~~el~~~~p-----~t 165 (265)
..-.-+++..++.+.+-|=+--|-..-|-.+.+||+ +++.-+.. =+..+.. +.|+--+.++++...... ..
T Consensus 100 R~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs--~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 100 RQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS--RQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc--CCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 344556778889999999999999999999999998 77664443 3444444 668777888887655311 24
Q ss_pred HHHHHHHHHHHHHcCCH---------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy3174 166 PMLVNAQVAVLIAQDKY---------------EEAWDLLQDTAGDSEDTLINNMVTA 207 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g~~---------------eEAe~~l~~al~~~pdtl~nl~~~~ 207 (265)
|-...+.|.++...++- ++|...|++|+..+|.++..|..-.
T Consensus 178 Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 178 PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 56778999999999999 9999999999999999887665543
No 280
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=76.82 E-value=4.1 Score=22.93 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
...+..|.+.|++++|.+.+++|.+.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhHC
Confidence 34567788888888888888887653
No 281
>KOG4507|consensus
Probab=76.33 E-value=25 Score=35.58 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=71.0
Q ss_pred cCChHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Q psy3174 109 MYRNDLALKELKVMQDKDE---DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEA 185 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~---d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEA 185 (265)
.|+.-.|.+.+..++...| +-.+.|||...+.. +-..+|-.+..+......+-|+....+|..++.+.+...|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~----~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHY----GLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHh----hhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 5788899999999987655 45777888766643 3577888888887777667778778899999999999999
Q ss_pred HHHHHHHhcC---CHHHH
Q psy3174 186 WDLLQDTAGD---SEDTL 200 (265)
Q Consensus 186 e~~l~~al~~---~pdtl 200 (265)
.+.+++|+.+ +|++-
T Consensus 696 ~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECE 713 (886)
T ss_pred HHHHHHHHhcCCCChhhH
Confidence 9999999998 55543
No 282
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.32 E-value=7.1 Score=28.82 Aligned_cols=51 Identities=10% Similarity=0.155 Sum_probs=39.4
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPM---LVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~---lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.+.+.++|+...+.+.++.++.+. +|-.++-+|+-.|+|+++...-.+-++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999998888765433 677788889999999999887665554
No 283
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.02 E-value=51 Score=28.43 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhcCCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCccC
Q psy3174 148 LNEAFYTLQDLIDKYGSTP--------MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~--------~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ea~ 217 (265)
++.|.-+++-+...+|.+. .+--....+.|..|+|++|+++|++..+ +|+ .+-..-....... -
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K-----d 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK-----D 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc-----c
Confidence 4567777777777666431 1223334568999999999999999998 444 2211111111111 1
Q ss_pred CCChhhhcH--HHHHHHHHHHHhhc
Q psy3174 218 VSPPFLFRS--DETTATLDACGLQS 240 (265)
Q Consensus 218 p~hp~~~~~--~~~~~~FD~~~~~~ 240 (265)
|.||++.+. ...-+.-+.+++.+
T Consensus 159 ~~h~~lqnFSy~~~~~ki~~~ve~~ 183 (200)
T cd00280 159 PAHPVLQNFSYSHFMQKMKSYVELV 183 (200)
T ss_pred cccHHHHhccHHHHHHHHHHHHHHH
Confidence 889998874 44444445555443
No 284
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.65 E-value=19 Score=28.54 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=42.7
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHhhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3174 136 SAWVHIANNVDKLNEAFYTLQDLIDKY-G-STPMLVNAQVAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 136 ~a~v~l~~g~~~~~eA~~~~~el~~~~-p-~t~~lLn~~A~~~~~~g~~eEAe~~l~~al 193 (265)
..|+..+.- ..++..+|..+..+. + ..+..+...|..+...|++++|.++++.++
T Consensus 70 kiWi~ya~~---~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 70 KIWIKYADL---SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHTT---BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH---ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 456666543 338999999998764 3 567789999999999999999999998874
No 285
>KOG1550|consensus
Probab=75.26 E-value=48 Score=32.99 Aligned_cols=113 Identities=12% Similarity=0.003 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHc-------cCCCcHHHHHHHHHHHHHhc--cc-cHHHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTM-----YRNDLALKELKVMQD-------KDEDHTLTQLCSAWVHIANN--VD-KLNEAFYTLQD 157 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~-----~r~d~Aek~l~~~~~-------~~~d~~l~~la~a~v~l~~g--~~-~~~eA~~~~~e 157 (265)
-+++.....+++||+.- .+++.|...|+.+.+ .. .+..+...+++..... .. +++.|+.+|.+
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~ 318 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTK 318 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 56677777777777764 457777777777755 33 2223334455544321 13 56778888888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQD---KYEEAWDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g---~~eEAe~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
..+... +.....+|+|++... ++..|-.++..|... |++...+++.|+..
T Consensus 319 aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 319 AAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYEL 372 (552)
T ss_pred HHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 776632 234445677777766 467888888888877 88888888766554
No 286
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=75.25 E-value=29 Score=33.96 Aligned_cols=81 Identities=16% Similarity=0.182 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHH
Q psy3174 130 TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----SEDTLINNMV 205 (265)
Q Consensus 130 ~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~ 205 (265)
+--.||.|-.-..+ |.|.+++-.=..+..-.| ++..+-.+|.|.+.+.+|+||.+++...=-- +..+--.++.
T Consensus 462 ian~LaDAEyLysq--gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~l 538 (549)
T PF07079_consen 462 IANFLADAEYLYSQ--GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALAL 538 (549)
T ss_pred HHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 33356666554545 669999888888888888 8888999999999999999999999754221 3334445555
Q ss_pred HHHHcCCC
Q psy3174 206 TAGRLGKG 213 (265)
Q Consensus 206 ~~~~~Gk~ 213 (265)
|.-|+-|+
T Consensus 539 CqKh~~kd 546 (549)
T PF07079_consen 539 CQKHLPKD 546 (549)
T ss_pred HHHhhhhh
Confidence 66665553
No 287
>KOG0551|consensus
Probab=75.23 E-value=19 Score=33.88 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHH-HhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCC
Q psy3174 146 DKLNEAFYTLQDL-IDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGK 212 (265)
Q Consensus 146 ~~~~eA~~~~~el-~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk 212 (265)
.+|..|.+.|-+- ..+.++ ...++++.|.|+...|+|.-|...-..|+..+|+ ..+--+-|...+.+
T Consensus 95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 5677777777764 344443 3446777777777777777777777777776554 22333344444444
No 288
>PF13041 PPR_2: PPR repeat family
Probab=74.45 E-value=7.4 Score=25.07 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.-.++..+.+.|++++|.+.|++|.+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 344556666666666666666666663
No 289
>KOG1585|consensus
Probab=74.43 E-value=52 Score=29.83 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-HHHHHHHHH---HHHHhccccHHHHHHHHHHHHhh---c--CCCHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDH-TLTQLCSAW---VHIANNVDKLNEAFYTLQDLIDK---Y--GSTPM 167 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-~l~~la~a~---v~l~~g~~~~~eA~~~~~el~~~---~--p~t~~ 167 (265)
+.+.-.+-+|..-+.++.|...+.++.+-.+.+ .+..-|-++ .-+++.-.++.|+.-+|++.+.. + |+|..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 344444445555566666666666665422211 111111111 11223335566666666665432 2 24444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-----HHHHHHHHHHHHHcCCCCc
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD----S-----EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~----~-----pdtl~nl~~~~~~~Gk~~e 215 (265)
.-...|.=.+.--+.++|..+++++++. + -+.+.-...++..+.+..|
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 4445555566666667777777766664 1 1133344455555555544
No 290
>KOG1941|consensus
Probab=74.42 E-value=33 Score=32.80 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc--CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC--------
Q psy3174 130 TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY--GSTPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD-------- 195 (265)
Q Consensus 130 ~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~--p~t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~-------- 195 (265)
....++.|..++ +.++.+...|+.+..-. .+++. +..+++..+-+..++++|.-+..+|+++
T Consensus 124 ~~l~~~~Ahlgl----s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d 199 (518)
T KOG1941|consen 124 VSLSMGNAHLGL----SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD 199 (518)
T ss_pred hhhhHHHHhhhH----HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence 344466666654 44899999999876432 23333 5688899999999999999999999886
Q ss_pred -----CHHHHHHHHHHHHHcCCCCcc
Q psy3174 196 -----SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 196 -----~pdtl~nl~~~~~~~Gk~~ea 216 (265)
+.-.+.+|+|.+..+|+..++
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA 225 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDA 225 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccH
Confidence 444788999999999997654
No 291
>KOG1920|consensus
Probab=74.32 E-value=64 Score=35.10 Aligned_cols=146 Identities=18% Similarity=0.135 Sum_probs=84.2
Q ss_pred hhccHHHHHHHHhhccc-CChhhhhhHHHHHHHHHHcccChhHHhhhc-CChH--HHHHHHHHHHhcCCCcCcccccCCC
Q psy3174 20 YLGNYQQCIKEGQRLKA-TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-LPEE--LSCIKVLAEYLSIPSKNGSSNFGTH 95 (265)
Q Consensus 20 y~G~Y~~~i~~~~~~~~-~~~~~~~e~~~~~~Raylalg~~~~~l~ei-~~~~--l~~~~~~A~~l~~~~~~e~~~~~~~ 95 (265)
|+|+|..|+.-+..+.. -.|+- .-| -..+|.|..++.-. .++. ....-++|+++......+
T Consensus 892 ~L~ry~~AL~hLs~~~~~~~~e~----~n~----I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~------- 956 (1265)
T KOG1920|consen 892 YLKRYEDALSHLSECGETYFPEC----KNY----IKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSD------- 956 (1265)
T ss_pred HHHHHHHHHHHHHHcCccccHHH----HHH----HHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhcccc-------
Confidence 78888888876543332 22221 111 12344555544433 2233 334556888877544321
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccC-----------CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKD-----------EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-----------~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~ 164 (265)
-++..|...|+.++|.+.|+....|. +.+-+..+|+-.+.....++++-||..+..|.++....
T Consensus 957 -----~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~ 1031 (1265)
T KOG1920|consen 957 -----EAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE 1031 (1265)
T ss_pred -----HHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH
Confidence 12347778888888888887776652 33445556666666666778899999998887765321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
... .++.-..|++|...-..+
T Consensus 1032 -av~------ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1032 -AVA------LLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -HHH------HHhhHhHHHHHHHHHHhc
Confidence 111 245566788886654433
No 292
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=74.01 E-value=7.3 Score=24.07 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~ 190 (265)
-+.++|..+.++|++++|+.+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46688999999999999999944
No 293
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.70 E-value=28 Score=25.81 Aligned_cols=70 Identities=21% Similarity=0.099 Sum_probs=42.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCC----c-----HHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---cCCCHHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDED----H-----TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK---YGSTPMLVN 170 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d----~-----~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~---~p~t~~lLn 170 (265)
-.-.+..+++..|.+.+.+..+.... . ....+..+.+.... |.+++|...++|.... ..|...+..
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~--G~~~~A~~~l~eAi~~Are~~D~~~l~~ 82 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF--GHYEEALQALEEAIRLARENGDRRCLAY 82 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 34567889999999998888774211 1 12223333333334 7899999999997643 444443433
Q ss_pred HHHH
Q psy3174 171 AQVA 174 (265)
Q Consensus 171 ~~A~ 174 (265)
.+.|
T Consensus 83 al~~ 86 (94)
T PF12862_consen 83 ALSW 86 (94)
T ss_pred HHHH
Confidence 3333
No 294
>KOG4642|consensus
Probab=73.50 E-value=10 Score=34.08 Aligned_cols=72 Identities=6% Similarity=-0.105 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHH---HHHHHHHHHcCCCCccC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTL---INNMVTAGRLGKGNEMS 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl---~nl~~~~~~~Gk~~ea~ 217 (265)
.+|.+|..-|-+..-..|.-+.-.-+-|.||++..+|+-++..=++|++.+|... +-++.+.....+.++++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 6788999999998888887777888899999999999999999999999977743 45555555555555543
No 295
>KOG0376|consensus
Probab=73.21 E-value=1.8 Score=42.04 Aligned_cols=93 Identities=9% Similarity=0.037 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHH---HHHHHHHHHcCCCCccC-----
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTL---INNMVTAGRLGKGNEMS----- 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl---~nl~~~~~~~Gk~~ea~----- 217 (265)
+.+..|.-+|-++.+.+|.........|.++++.+.|-+|.....+|++.+|.-. .--+.+...+|+..+++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 6799999999999999998888888888999999999999999999999988732 12233444444444433
Q ss_pred -----CCChhhhcHHH------HHHHHHHHHh
Q psy3174 218 -----VSPPFLFRSDE------TTATLDACGL 238 (265)
Q Consensus 218 -----p~hp~~~~~~~------~~~~FD~~~~ 238 (265)
|+-|.++.... ++..|++...
T Consensus 98 ~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred hhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 99998887654 4456666554
No 296
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=72.78 E-value=7.8 Score=22.30 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.-..+.++.+.|+++.|.+.+..|.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345566788888888888888888663
No 297
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=72.69 E-value=37 Score=33.01 Aligned_cols=105 Identities=21% Similarity=0.147 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc--cccCCCHHHHH-----HHHHHHHHcCChHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS--SNFGTHLEINA-----LKIHTYLTMYRNDL 114 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~--~~~~~~lE~~a-----l~v~~~l~~~r~d~ 114 (265)
.++...--+.+...+++|..++.. ++...++.+...--.. .-..++.-.++ -+|-||+.++++|+
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~r--------F~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdl 246 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGR--------FRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDL 246 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH--------HHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 333344446778888888876652 3444444443221111 11123333333 24679999999999
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHH
Q psy3174 115 ALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQ 156 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~ 156 (265)
|...-.+.+-.+|-...-.|..|-+.-.. +||.+|-..+-
T Consensus 247 ALnh~hrsI~lnP~~frnHLrqAavfR~L--eRy~eAarSam 286 (569)
T PF15015_consen 247 ALNHSHRSINLNPSYFRNHLRQAAVFRRL--ERYSEAARSAM 286 (569)
T ss_pred HHHHHhhhhhcCcchhhHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 99999999999998888888887776555 88998865443
No 298
>KOG2041|consensus
Probab=72.30 E-value=45 Score=34.51 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=53.8
Q ss_pred HHHHHcCChHHHHHHHHHHHcc------------CCCcHHHHHHHHHHHHH-------------------hccccHHHHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDK------------DEDHTLTQLCSAWVHIA-------------------NNVDKLNEAF 152 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~------------~~d~~l~~la~a~v~l~-------------------~g~~~~~eA~ 152 (265)
..|+.++|-|+|..+++++-+| |.|+. ++-.||.++. ...+++-|++
T Consensus 755 k~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~--~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 755 KLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDE--GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred hhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHH
Confidence 4788889999998888776553 33332 2333444443 1114444555
Q ss_pred HHHHHH------HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3174 153 YTLQDL------IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 153 ~~~~el------~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~ 190 (265)
|..+.. ...-|.+..+|--+|..+..-|..++|...+.
T Consensus 833 y~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 554432 35667777788888888888888888877654
No 299
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.04 E-value=71 Score=28.26 Aligned_cols=118 Identities=12% Similarity=-0.042 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCcH-HHHHHHHHHHHHh---ccc--cHHHHHHHHHHHHhhc
Q psy3174 93 GTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDEDHT-LTQLCSAWVHIAN---NVD--KLNEAFYTLQDLIDKY 162 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d~~-l~~la~a~v~l~~---g~~--~~~eA~~~~~el~~~~ 162 (265)
.+.++..+.++.+|.. -.++..|.+.|.++-+.+.... ++++..++..... .+- ....|++.|.+.....
T Consensus 106 ~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 106 DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence 4567778888888877 3478999999999988877763 4455555554332 112 2337999999988775
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC
Q psy3174 163 GSTPMLVNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~Gk~ 213 (265)
.+.....+|.+|.. -.++++|...+.+|.+. +++...++. +....|..
T Consensus 186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g 238 (292)
T COG0790 186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEG 238 (292)
T ss_pred --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCC
Confidence 45566667777755 34889999999999998 878888888 77766644
No 300
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=71.97 E-value=15 Score=39.00 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=64.0
Q ss_pred HHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-------hcc-ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 107 LTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA-------NNV-DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 107 l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-------~g~-~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+.-..||.|...|+++-+-=|+-.--.-|+=..++. .|+ ..+.+|..-|+.+... |.-|+=+-|.|.+|-+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 564 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAPLEYLGKALVYQR 564 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCchHHHhHHHHHHH
Confidence 334457888888888776545443333333222222 222 4678888888887665 4567778899999999
Q ss_pred cCCHHHHHHHHHHHhcC---CHH
Q psy3174 179 QDKYEEAWDLLQDTAGD---SED 198 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~---~pd 198 (265)
+|+|+|=...+.-|+.+ ||+
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 565 LGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999998 776
No 301
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=70.46 E-value=5.5 Score=22.76 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
|.+-.++.+.|++++|..++.+..+
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444456666666666666655443
No 302
>PRK10941 hypothetical protein; Provisional
Probab=70.06 E-value=37 Score=30.74 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=55.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.+-.+|...++++.|.+....++.++||++--..--+.+..-. |.++.|..-++-..+.+|+.|...
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL--~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL--DCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHhCCCchhHH
Confidence 3456788999999999999999999999997666666665444 789999999999999999877643
No 303
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.95 E-value=10 Score=21.57 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=17.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
..+..|.+.|++++|.+.|.+|.+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4556777777888888888777653
No 304
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=68.97 E-value=86 Score=28.02 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHHHHcC-ChHHHHHHHHHHHcc----C------CC------cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 101 LKIHTYLTMY-RNDLALKELKVMQDK----D------ED------HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 101 l~v~~~l~~~-r~d~Aek~l~~~~~~----~------~d------~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
..+--.+..+ +++.|.+-++++.++ . ++ .++..++.+++..- ..+..++|..+.+.+...+|
T Consensus 40 n~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~-~~~~~~ka~~~l~~l~~e~~ 118 (278)
T PF08631_consen 40 NIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWD-TYESVEKALNALRLLESEYG 118 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhCC
Confidence 3344444555 666666666666554 1 11 13334444444221 11556667777777777777
Q ss_pred CCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 164 STPMLV-NAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 164 ~t~~lL-n~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+.+.+. -.+-++.- .++.+++++.+.+.+..
T Consensus 119 ~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 119 NKPEVFLLKLEILLK-SFDEEEYEEILMRMIRS 150 (278)
T ss_pred CCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHh
Confidence 655543 22322222 67788888888777754
No 305
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=68.56 E-value=28 Score=28.64 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+++-+.-..++.++......+|..|.-+|.+|-+.|...+|.+++.+|-+.
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 366777777888887544457888889999999999999999999999776
No 306
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.92 E-value=16 Score=22.58 Aligned_cols=32 Identities=13% Similarity=-0.052 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHH--HHHHHccCC
Q psy3174 96 LEINALKIHTYLTMYRNDLALKE--LKVMQDKDE 127 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~--l~~~~~~~~ 127 (265)
+|.+.-.+-.+..+|+++.|++. |+-+..+++
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 35556666777777888888887 435444443
No 307
>KOG0551|consensus
Probab=67.41 E-value=30 Score=32.56 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=65.5
Q ss_pred HHHHcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc
Q psy3174 105 TYLTMYRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIANN---VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ 179 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g---~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~ 179 (265)
-|.+-.||--|...|.+-+.. ++.++.+- -|.|-+.. -|+|..|+.--.......|.......--|-|++.+
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnav---LY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAV---LYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 556667788888888887764 33333221 12222211 17799999888888888998888888999999999
Q ss_pred CCHHHHHHHHHHHhcC
Q psy3174 180 DKYEEAWDLLQDTAGD 195 (265)
Q Consensus 180 g~~eEAe~~l~~al~~ 195 (265)
.++.+|.....+.++.
T Consensus 167 e~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999999999998887
No 308
>KOG2422|consensus
Probab=67.26 E-value=1.1e+02 Score=30.91 Aligned_cols=175 Identities=11% Similarity=0.056 Sum_probs=91.9
Q ss_pred HHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChH-HHHHHHHHHHhcCCCcCcc--------------
Q psy3174 25 QQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEE-LSCIKVLAEYLSIPSKNGS-------------- 89 (265)
Q Consensus 25 ~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~-l~~~~~~A~~l~~~~~~e~-------------- 89 (265)
|+++..+ ++..++.-...++.+|++-.-...|....++. ++|- +-.+..+|.+....++.+.
T Consensus 240 q~~isfF-~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~--ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~ 316 (665)
T KOG2422|consen 240 QKGISFF-KFEHSNSYEQAQRDFYLAVIVHDPNNVLILLI--SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDR 316 (665)
T ss_pred cCceeEE-EeecchHHHHHHHHHHHHHhhcCCcceeeeec--cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Confidence 4444443 34444444456666665544444333332222 4554 5566677777766665432
Q ss_pred ----------cc------cCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHhccccHH
Q psy3174 90 ----------SN------FGT---HLEINALKIHTYLTMYRNDLALKELKVMQDKDED-HTLTQLCSAWVHIANNVDKLN 149 (265)
Q Consensus 90 ----------~~------~~~---~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~~l~~la~a~v~l~~g~~~~~ 149 (265)
++ ++. -.=+++...+-+-+-|=+--|-.--+-++.++|+ +++..+...=+ ++.....|+
T Consensus 317 a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALrareYq 395 (665)
T KOG2422|consen 317 ALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRAREYQ 395 (665)
T ss_pred HhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHHHhHH
Confidence 11 111 1222333344444456677777777777888988 88776655333 222224455
Q ss_pred HHHHHHHHHHh--hcCCCHHHHHHHHH--HHHHcCC---HHHHHHHHHHHhcCCHHHHHHH
Q psy3174 150 EAFYTLQDLID--KYGSTPMLVNAQVA--VLIAQDK---YEEAWDLLQDTAGDSEDTLINN 203 (265)
Q Consensus 150 eA~~~~~el~~--~~p~t~~lLn~~A~--~~~~~g~---~eEAe~~l~~al~~~pdtl~nl 203 (265)
==+.++++.-. +....|-...++|+ .++.+.. -.-|...+++|+..+|-+|.-|
T Consensus 396 wiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~eL 456 (665)
T KOG2422|consen 396 WIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSEL 456 (665)
T ss_pred HHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHHH
Confidence 55555555411 11122233334444 4444444 4568999999999888666544
No 309
>KOG0985|consensus
Probab=67.06 E-value=75 Score=34.41 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC---CCcHHHHH-------------HHHHHH------------HHhc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKD---EDHTLTQL-------------CSAWVH------------IANN 144 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~---~d~~l~~l-------------a~a~v~------------l~~g 144 (265)
..++|-+...|.+....+-+.+-...+.++.=-. .++...|. -+.|++ ++-.
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 5789999999999999888877777776653200 01110000 011221 2223
Q ss_pred cccHHHHHHHHHHHH----------------h---hcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHH
Q psy3174 145 VDKLNEAFYTLQDLI----------------D---KYG---STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLIN 202 (265)
Q Consensus 145 ~~~~~eA~~~~~el~----------------~---~~p---~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~n 202 (265)
.+-|+|||.+|++.- + .+. ..|.++..+|-+.+++|+.++|.+.+-+|- ||....+
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~e 1138 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLE 1138 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHH
Confidence 366999999999841 1 111 578899999999999999999998776552 3433333
Q ss_pred HHHHHHHcCC
Q psy3174 203 NMVTAGRLGK 212 (265)
Q Consensus 203 l~~~~~~~Gk 212 (265)
.+.++...|+
T Consensus 1139 Vi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1139 VIDVASRTGK 1148 (1666)
T ss_pred HHHHHHhcCc
Confidence 3333333333
No 310
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=65.48 E-value=37 Score=29.64 Aligned_cols=59 Identities=12% Similarity=-0.153 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 151 AFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 151 A~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
|..+|..+....|......|.+|+++...|+.=+|.=.+.+++-. .|....|+..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999866 66677898888887
No 311
>KOG2300|consensus
Probab=65.30 E-value=66 Score=31.89 Aligned_cols=116 Identities=13% Similarity=-0.018 Sum_probs=73.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccC---CCcHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhhcC-CCHH--HHH
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQDKD---EDHTLTQLCSAWVHIANNV-----DKLNEAFYTLQDLIDKYG-STPM--LVN 170 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~~~---~d~~l~~la~a~v~l~~g~-----~~~~eA~~~~~el~~~~p-~t~~--lLn 170 (265)
.|.|-+-+||+.+|..++..|.+|- |.-.+++-.++-+....|. +-+++|..-|.+....-. .+.. +-.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3557888999999999999999973 4434555555555444332 678999999998765532 2322 334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCCCccC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD----------SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~----------~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
++|++|+.+|+-+.-.+++...=-. ...++.-.+..+.++|+..|+.
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK 465 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAK 465 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 6899999998876655544332111 1123344455667777776643
No 312
>KOG1258|consensus
Probab=63.93 E-value=1.7e+02 Score=29.52 Aligned_cols=119 Identities=12% Similarity=-0.009 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--C----H
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--T----P 166 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t----~ 166 (265)
++++....+-+.+-..+|+++.|..+|+++.+--| .. ..+-..|+++-...++.+.+.+..+-.....+. + .
T Consensus 363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p-g~-v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~ 440 (577)
T KOG1258|consen 363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP-GL-VEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILE 440 (577)
T ss_pred CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC-ch-hhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhH
Confidence 78889999999999999999999999999977663 32 344456788777778899988844433333331 2 2
Q ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCC
Q psy3174 167 MLVNAQVAV-LIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKG 213 (265)
Q Consensus 167 ~lLn~~A~~-~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~ 213 (265)
.++...+.. +.-.++-++|..++.++.+..|+ ...-++......+..
T Consensus 441 ~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 441 KLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 233333322 34467889999999999999555 334455555555543
No 313
>KOG2047|consensus
Probab=63.86 E-value=1.8e+02 Score=30.04 Aligned_cols=118 Identities=10% Similarity=0.010 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHh------------h
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLID------------K 161 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~------------~ 161 (265)
-+....+..|...|.+|.|+.++.++.+..=. ++--||+.|.+.+ ....+++.|+.+.+.+.- .
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 45666788999999999999999999775332 3445677777776 445788899998888631 1
Q ss_pred cC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 162 YG------STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 162 ~p------~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
+| .++.++...+...-..|-++.-...+.+.+++ -|-+.+|.+..+....-..+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 12 13344444555555666666667777777776 88888888776655443333
No 314
>KOG3824|consensus
Probab=62.80 E-value=38 Score=31.73 Aligned_cols=50 Identities=12% Similarity=0.041 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
|+.++|-.+|+-+....|..|.+|.-+|...-.-.+.-+|..++.+||..
T Consensus 130 Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 44555555555555555555554444444444444555555555555544
No 315
>KOG1941|consensus
Probab=62.69 E-value=1.2e+02 Score=29.24 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHcc----CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh---hcC---CC--
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDK----DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID---KYG---ST-- 165 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~----~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~---~~p---~t-- 165 (265)
.....+.+++.++-+..+..-|+.+..+ ++...-.|+.-+.-.+...-..+++|.-+-.++.+ .++ |+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3344566777788888887777776653 44444344443333333333567777777766543 333 22
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHH------HHHHHHHHHHHcCCCCc
Q psy3174 166 --PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SED------TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 166 --~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pd------tl~nl~~~~~~~Gk~~e 215 (265)
.+++..+||++..+|+.-.|.+.-+++.++ +.| .+--++-++...|..+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 457889999999999999999999998776 222 34455556666665543
No 316
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.49 E-value=22 Score=31.41 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCc
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD---------SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~---------~pdtl~nl~~~~~~~Gk~~e 215 (265)
+.-.+|.-|+..|+|++|..+++.+... -.+++..+..|+..+|+..+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~ 236 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVED 236 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 5567889999999999999999988643 45577889999999988653
No 317
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=61.93 E-value=84 Score=25.39 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=57.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHcc----CC----Cc-HHHHHHHHHHHHHhc-cccHHH-------HHHHHHHHHhhcCCC
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDK----DE----DH-TLTQLCSAWVHIANN-VDKLNE-------AFYTLQDLIDKYGST 165 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~----~~----d~-~l~~la~a~v~l~~g-~~~~~e-------A~~~~~el~~~~p~t 165 (265)
++-.+.-|-+++|...++++.++ .+ || -.--++-+|+.-+.+ -|+|++ |+++|..=++.+.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 44556678899999999998874 22 21 111233344433322 267765 566777777887765
Q ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 166 PM----LVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 166 ~~----lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
-. ...+.|+++-..|+.+||...++.+-+
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 44 346789999999999999999998866
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=61.39 E-value=73 Score=26.69 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 146 DKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
|.+++|+..|.++.+....+ ..+.-.+--+.+..|+|......+.++-..
T Consensus 50 Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 50 GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55666666666665554321 123334444555566666666666666543
No 319
>KOG3807|consensus
Probab=60.36 E-value=62 Score=30.70 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=14.6
Q ss_pred ccccHHHHHHHHHHHHhhcC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p 163 (265)
..||..||.++|+++...+|
T Consensus 287 klGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HhhhHHHHHHHHHHHhhhcc
Confidence 34777777777777777776
No 320
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.18 E-value=18 Score=31.51 Aligned_cols=53 Identities=17% Similarity=0.001 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---------------CHH-HHHHHHHHHHHcCCCCccC
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---------------SED-TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---------------~pd-tl~nl~~~~~~~Gk~~ea~ 217 (265)
-..+...+||++..+|+-+.....+++|++. +.. ++.-++.+...+|+.++|.
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~ 185 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAK 185 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 3457788999999999977777777776653 222 4456788899999987765
No 321
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.96 E-value=1.3e+02 Score=26.56 Aligned_cols=15 Identities=13% Similarity=0.049 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHhcC
Q psy3174 181 KYEEAWDLLQDTAGD 195 (265)
Q Consensus 181 ~~eEAe~~l~~al~~ 195 (265)
++.+|...+.+|.+.
T Consensus 128 d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 128 DLVKALKYYEKAAKL 142 (292)
T ss_pred CHHHHHHHHHHHHHc
Confidence 445555555555444
No 322
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.05 E-value=36 Score=32.00 Aligned_cols=37 Identities=22% Similarity=0.052 Sum_probs=33.5
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
+.+.+|.....|..++.++.++|+.+.|.+++++|+=
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999964
No 323
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=55.74 E-value=47 Score=31.79 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHh---c-----cccHHHHHHHHHHHHh-hcCCCHHHHH
Q psy3174 112 NDLALKELKVMQDKDEDHTLTQLCSAWVHIAN---N-----VDKLNEAFYTLQDLID-KYGSTPMLVN 170 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~---g-----~~~~~eA~~~~~el~~-~~p~t~~lLn 170 (265)
+..|.+.+++++.-+++.+..++|++++.++. + .+-|++|..+..++-. .++....+|.
T Consensus 334 ~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLd 401 (404)
T PF12753_consen 334 IKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDILD 401 (404)
T ss_dssp HHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHHh
Confidence 44566677777777888888899999888862 1 1335556666555532 2444444443
No 324
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=54.88 E-value=23 Score=22.22 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
++...++-+-+..++++.|...|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667788888888999999988888764
No 325
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=54.83 E-value=1e+02 Score=24.23 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHc
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTP---MLVNAQVAVLIAQ 179 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~---~lLn~~A~~~~~~ 179 (265)
|++-+|..+.+++...|+.+. .+...+|.+++.+
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l 46 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL 46 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH
Confidence 678888888888888888533 3444455555443
No 326
>KOG1130|consensus
Probab=54.53 E-value=1.1e+02 Score=30.02 Aligned_cols=114 Identities=12% Similarity=0.009 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHc----cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH-------HhhcCCCHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQD----KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL-------IDKYGSTPM 167 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~----~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el-------~~~~p~t~~ 167 (265)
...++-++.-.|.++.|...|+..+. +++..+-+|.+-+.-|..+=...++.|+.+++.- .+.-+. .-
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe-~R 316 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE-LR 316 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HH
Confidence 34456688888999999999998755 5666666655443333333335688888877763 233322 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHH----HHHHHHHHHHHcCCC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SED----TLINNMVTAGRLGKG 213 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pd----tl~nl~~~~~~~Gk~ 213 (265)
..-++|.++-..|..+.|....++.++. +|. ...|+.-.-..+|.+
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 4567889999999999999998888765 333 223555555556654
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=53.96 E-value=77 Score=28.92 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 129 HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 129 ~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+++++++++. ..++++.+...++++...+|-.-.++-.+=-.+++.|+...|...+.+.-..
T Consensus 154 ~~l~~lae~~~----~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALI----ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHH----hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 46667777666 3478999999999999999965555555666799999999999998887663
No 328
>KOG1914|consensus
Probab=53.81 E-value=1.4e+02 Score=30.01 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=69.8
Q ss_pred HHHHccCCCcHHHHHHHHHHHHH--hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--
Q psy3174 120 KVMQDKDEDHTLTQLCSAWVHIA--NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 120 ~~~~~~~~d~~l~~la~a~v~l~--~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-- 195 (265)
++-++.+|-++ .+|..|. .+...+.+....|+++...+|.++..+-...--.++-.+|+.-|.++.++|.+
T Consensus 10 ~~rie~nP~di-----~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL 84 (656)
T KOG1914|consen 10 RERIEENPYDI-----DSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL 84 (656)
T ss_pred HHHHhcCCccH-----HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 45556788888 7888777 23358999999999999999999988888888899999999999999999987
Q ss_pred CHHHHH-HHHHHHHHcCCC
Q psy3174 196 SEDTLI-NNMVTAGRLGKG 213 (265)
Q Consensus 196 ~pdtl~-nl~~~~~~~Gk~ 213 (265)
+-|... -+-.+-...|+.
T Consensus 85 nlDLW~lYl~YVR~~~~~~ 103 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKL 103 (656)
T ss_pred hHhHHHHHHHHHHHHccCc
Confidence 777553 334445555554
No 329
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=53.18 E-value=1.9e+02 Score=28.09 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=83.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHH
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQD-KD-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM-LVNAQVAVLIA 178 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~-~~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~-lLn~~A~~~~~ 178 (265)
.++|.-.-|+-++|+|.-++... +. +-.+|..|-++-..+.. |++++|..-|+-+.+. |.|-. .|-++=.---+
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~e--G~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr 166 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLE--GDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQR 166 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhc--CchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHh
Confidence 46677888999999999999874 44 44577777788887777 7799999999988765 65544 67777777788
Q ss_pred cCCHHHHHHHHHHHhcCCHHH-HH--HHHHHHHHcCCCCccC
Q psy3174 179 QDKYEEAWDLLQDTAGDSEDT-LI--NNMVTAGRLGKGNEMS 217 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~~pdt-l~--nl~~~~~~~Gk~~ea~ 217 (265)
+|..+-|..+-.++.++-|.. .+ ....-.+..|.++.++
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 999999999999999884441 12 2222334566666554
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=51.16 E-value=1.2e+02 Score=31.93 Aligned_cols=111 Identities=19% Similarity=0.099 Sum_probs=72.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHcc-----------------CCC-----cHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDK-----------------DED-----HTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~-----------------~~d-----~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
|.=.++.|+++.|..++.+- +| =|+ ++..++..+|..... .++.||..+..++..
T Consensus 367 I~hAlaA~d~~~aa~lle~~-~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~--~r~~ea~~li~~l~~ 443 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQL-EWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQ--HRLAEAETLIARLEH 443 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhh-hhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHc--cChHHHHHHHHHHHH
Confidence 34455566666666666655 11 122 344467789997766 679999999999875
Q ss_pred hcCC-------CH--HHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHH-------HHHHHHHHHHHcCCCCcc
Q psy3174 161 KYGS-------TP--MLVNAQVAVLIAQDKYEEAWDLLQDTAGD-SED-------TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 161 ~~p~-------t~--~lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pd-------tl~nl~~~~~~~Gk~~ea 216 (265)
.-|. +. ......|++.+.+|+.++|+++.+.+++. .++ .+.+++.+....|..+.+
T Consensus 444 ~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~A 516 (894)
T COG2909 444 FLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQA 516 (894)
T ss_pred HhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHH
Confidence 5442 11 12345678889999999999999999987 222 345666666666765443
No 331
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=50.51 E-value=27 Score=21.87 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+..+|-+.+..++|++|...+++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4567888999999999999999999875
No 332
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=50.19 E-value=62 Score=24.73 Aligned_cols=40 Identities=18% Similarity=-0.053 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWV 139 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v 139 (265)
...+.+.+..||+..|+|...++.+..+...++.|..|.-
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~A 102 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARA 102 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3445566666777777777777766666666655554443
No 333
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=50.12 E-value=82 Score=23.17 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=46.8
Q ss_pred HHHHHHH-hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 136 SAWVHIA-NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 136 ~a~v~l~-~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
++|..++ .+.+-+.+|..|..-+-+.-|+...-+...|.+++.+|+-..|...+..
T Consensus 9 ~VEaalAavNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~ 65 (79)
T TIGR02498 9 VVEAALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLEN 65 (79)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 3566665 3457899999999999888898888899999999999999999988864
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=49.62 E-value=1.9e+02 Score=25.82 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=27.6
Q ss_pred HHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhh
Q psy3174 13 FDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEE 65 (265)
Q Consensus 13 f~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~e 65 (265)
+.+...+-+|+|...-+........++ +..++.+-..+..|+++.+...
T Consensus 3 ~~~eaaWrl~~Wd~l~~~~~~~~~~~~----~~~~~~al~~l~~~~~~~~~~~ 51 (352)
T PF02259_consen 3 LAAEAAWRLGDWDLLEEYLSQSNEDSP----EYSFYRALLALRQGDYDEAKKY 51 (352)
T ss_pred HHHHHHHhcCChhhHHHHHhhccCCCh----hHHHHHHHHHHhCccHHHHHHH
Confidence 345677889999885555443333333 2344444445556777754443
No 335
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.11 E-value=27 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.-+...|+-....|+|+||..++.++++
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456788899999999999999999988
No 336
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=48.79 E-value=2e+02 Score=25.68 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=70.7
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH-hhcCCCH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK-D-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI-DKYGSTP 166 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~-~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~-~~~p~t~ 166 (265)
..+|+.++...+...++.+.++.+.+++++.+|..- + .+..+.......-.+.. .....|...+.++. .+.-.+.
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~--~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE--KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh--hCcHHHHHHHHHHHHHHhCCCh
Confidence 457889999999999999999999999999999773 3 44444444444433433 33455666666654 3322222
Q ss_pred HHHHHHHH---HHHHcC--C------HHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCC
Q psy3174 167 MLVNAQVA---VLIAQD--K------YEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 167 ~lLn~~A~---~~~~~g--~------~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~ 213 (265)
..+-..++ ..+..+ . .+....++...-.. .+++...+.++.|..|+.
T Consensus 193 ~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~ 255 (278)
T PF08631_consen 193 DQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKK 255 (278)
T ss_pred hHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 10111111 122222 1 33343444422221 777887888888887753
No 337
>KOG1308|consensus
Probab=48.28 E-value=4 Score=38.26 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=61.0
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCcc
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLI---NNMVTAGRLGKGNEM 216 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~---nl~~~~~~~Gk~~ea 216 (265)
+.|.+++|+..|-......|....+....|.+++.++++..|+..+..|+++|||+-. --++.-..+|++.++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 4477999999999999999999999999999999999999999999999999999652 234455566776654
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.32 E-value=68 Score=31.90 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+|+.+|+..-+-+....-.|+.++---|+.-.++|-++||.-..++.+-+
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 44555555544444443444444444444455555555555555555544
No 339
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=47.07 E-value=1.3e+02 Score=24.69 Aligned_cols=91 Identities=25% Similarity=0.104 Sum_probs=57.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc----------------------------------CCC-----cHHHHHHHHHHHH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDK----------------------------------DED-----HTLTQLCSAWVHI 141 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~----------------------------------~~d-----~~l~~la~a~v~l 141 (265)
..++..+..|+.+.|.+.+.++... .++ ..-..+..+--.
T Consensus 7 ~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~- 85 (155)
T PF10938_consen 7 QKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANEL- 85 (155)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHH-
Confidence 3466788899999999999988761 011 111122222222
Q ss_pred HhccccHHHHHHHHHHHHh-------hcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 142 ANNVDKLNEAFYTLQDLID-------KYG--STPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~-------~~p--~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
...|+.+.|....+.+.. .-| .++..+ ..|..++..|++.||-..|..+++
T Consensus 86 -l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av-~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 86 -LKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAV-KQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp -HHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHH-HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHH-HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 234789999998888753 123 234444 578899999999999999999875
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=47.07 E-value=70 Score=31.06 Aligned_cols=136 Identities=15% Similarity=0.025 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCccc-ccCCCHHHHHHHHHHHHHcCChHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGSS-NFGTHLEINALKIHTYLTMYRNDL 114 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~~-~~~~~lE~~al~v~~~l~~~r~d~ 114 (265)
.+...++.++..+-.|+++.++.-+ ...+-.--..++.||..++-.+.. +...+++..+- +.+..|+++.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFe---LAl~lg~L~~ 336 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFE---LALQLGNLDI 336 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHH---HHHHCT-HHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhH---HHHhcCCHHH
Confidence 4455678888889999988754433 111122245578888877765442 34677787777 7888899998
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 115 ALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
|.++.++ .+..+.=.+|+..- ..+|+++-|..-|++..+-. ++..++...|+-+.=..+...|..
T Consensus 337 A~~~a~~---~~~~~~W~~Lg~~A----L~~g~~~lAe~c~~k~~d~~--------~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE---LDDPEKWKQLGDEA----LRQGNIELAEECYQKAKDFS--------GLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC---CSTHHHHHHHHHHH----HHTTBHHHHHHHHHHCT-HH--------HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh---cCcHHHHHHHHHHH----HHcCCHHHHHHHHHhhcCcc--------ccHHHHHHhCCHHHHHHHHHHHHH
Confidence 8766544 34334433444322 24477888888877765432 333457788887776677666665
Q ss_pred C
Q psy3174 195 D 195 (265)
Q Consensus 195 ~ 195 (265)
.
T Consensus 402 ~ 402 (443)
T PF04053_consen 402 R 402 (443)
T ss_dssp T
T ss_pred c
Confidence 5
No 341
>KOG1538|consensus
Probab=47.06 E-value=3.5e+02 Score=28.11 Aligned_cols=140 Identities=13% Similarity=0.026 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH-
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA- 171 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~- 171 (265)
....|.+-..++-+.+.+.+.+|..+|+++ ++.. ..|.+....+++.|||.+-+..-+.-|+ ...-.+
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~---gD~k-------siVqlHve~~~W~eAFalAe~hPe~~~d-Vy~pyaq 812 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKM---GDLK-------SLVQLHVETQRWDEAFALAEKHPEFKDD-VYMPYAQ 812 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHh---ccHH-------HHhhheeecccchHhHhhhhhCcccccc-ccchHHH
Confidence 345566666666777888899999999887 2222 2344555668899999876554332222 111100
Q ss_pred ----------HHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCC--------ccC----CCChhhhcHH
Q psy3174 172 ----------QVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGN--------EMS----VSPPFLFRSD 227 (265)
Q Consensus 172 ----------~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~--------ea~----p~hp~~~~~~ 227 (265)
---++.+.||-.||-..|++.-+. ..+-..--+..+|.+.++- ..+ ...||+..+.
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~y~yw~L~~q~Ld~~~~k~~~lftlakq~kFl~a~~ 892 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYYWMLSMQCLDIAQSKVKILFTLAKQSKFLGAYR 892 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccchhHHHHhhhhhhhhhhhhhhheeehhhccchhhhhh
Confidence 112345555555555555554332 2222222233445444431 111 6667777776
Q ss_pred HHHHHHHHHHhhcccc
Q psy3174 228 ETTATLDACGLQSNSE 243 (265)
Q Consensus 228 ~~~~~FD~~~~~~~~~ 243 (265)
--.-.||++-.-|-|.
T Consensus 893 l~~~~~d~l~~l~~pa 908 (1081)
T KOG1538|consen 893 LARHAYDKLRGLYIPA 908 (1081)
T ss_pred HHHHHhhhhhccCCcc
Confidence 6667788776655544
No 342
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=46.83 E-value=29 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-+...|+-.-..|+|+||..++.++++.
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566788899999999999999999984
No 343
>KOG2396|consensus
Probab=46.78 E-value=1.1e+02 Score=30.41 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcCCHH
Q psy3174 133 QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK-YEEAWDLLQDTAGDSED 198 (265)
Q Consensus 133 ~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~-~eEAe~~l~~al~~~pd 198 (265)
+|-..|++...-.+.+.+--.+|.++...||.+|.++..-|.=.+.-+. .+-|..++.++|..|||
T Consensus 106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 4556677777655668888888888888888888887766655555555 88888888888888555
No 344
>KOG3617|consensus
Probab=46.60 E-value=1.1e+02 Score=32.62 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWD 187 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~ 187 (265)
|-++||.-+|++-..- .+||- .|..+|+|.||.+
T Consensus 814 gMlEeA~~lYr~ckR~-----DLlNK---lyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY-----DLLNK---LYQSQGMWSEAFE 847 (1416)
T ss_pred hhHHHHHHHHHHHHHH-----HHHHH---HHHhcccHHHHHH
Confidence 3355555555553322 24443 2444555555544
No 345
>KOG3616|consensus
Probab=44.44 E-value=36 Score=35.47 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHH---------HhccccHHHHHHHHHH------
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHI---------ANNVDKLNEAFYTLQD------ 157 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l---------~~g~~~~~eA~~~~~e------ 157 (265)
....|....+++-+..-||++.|.|.|..+++++-=++ .|... ...+.++++|..+|-.
T Consensus 992 ~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni------twcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~ 1065 (1636)
T KOG3616|consen 992 DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI------TWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAA 1065 (1636)
T ss_pred ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc------hhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHH
Confidence 44566677778888899999999999999998765443 23221 1344689999999854
Q ss_pred ---HHh-hcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHH
Q psy3174 158 ---LID-KYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTL 200 (265)
Q Consensus 158 ---l~~-~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl 200 (265)
..+ .+|+ -+..+.++|.--+..|++-.|+..|.+|- .|++.
T Consensus 1066 aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran--kp~i~ 1111 (1636)
T KOG3616|consen 1066 AERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN--KPDIA 1111 (1636)
T ss_pred HHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC--CCchH
Confidence 233 3444 34588999998999999999998886653 44443
No 346
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.33 E-value=84 Score=26.26 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 148 LNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
.+......++....+| ++..+..++.++..+|+.+||.....++....|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444455556666666 556777789999999999999999999988766
No 347
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.06 E-value=45 Score=24.61 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=36.6
Q ss_pred hhhhccHHHHHHHHhhccc--CChhhhhhHHHHHHHHHHcccChhHHhh
Q psy3174 18 SYYLGNYQQCIKEGQRLKA--TDPKVLLEKDFYVCRSYLAQKKYKVVLE 64 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~--~~~~~~~e~~~~~~Raylalg~~~~~l~ 64 (265)
.|-.-..++||..+.+..+ .+++......-|++++|..-|+|...+.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788999999755443 3445578888999999999999987665
No 348
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.71 E-value=42 Score=32.24 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ 179 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~ 179 (265)
.-+..+++.+|++..|.|.+..+ +++.....+.... -...++...|.|||-+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~---------------------------~~is~~YyvGFaylMl 177 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPA---------------------------CHISTYYYVGFAYLML 177 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcc---------------------------hheehHHHHHHHHHHH
Confidence 33456777788888888877765 1122111111111 1233555667777777
Q ss_pred CCHHHHHHHHHHHhc
Q psy3174 180 DKYEEAWDLLQDTAG 194 (265)
Q Consensus 180 g~~eEAe~~l~~al~ 194 (265)
+||.+|...+...+-
T Consensus 178 rRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 178 RRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776665543
No 349
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=43.57 E-value=39 Score=24.54 Aligned_cols=29 Identities=7% Similarity=-0.097 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..+...|+-+-+.|+++||..+++++.+.
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999873
No 350
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.18 E-value=42 Score=23.29 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+...|+-.-..|++++|..++.++++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556788889999999999999999874
No 351
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=42.93 E-value=3.8e+02 Score=27.24 Aligned_cols=119 Identities=11% Similarity=-0.033 Sum_probs=81.3
Q ss_pred CCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhh-cCCCHH
Q psy3174 93 GTHLEINALK--IHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDK-YGSTPM 167 (265)
Q Consensus 93 ~~~lE~~al~--v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~-~p~t~~ 167 (265)
+.++++.... ...+-..++.++|--.....+..+++.... +|+.+... .+..-.+...+.++... .|+...
T Consensus 62 ~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~----~~~~~~~~~~~~~~a~~~~~~~~~ 137 (620)
T COG3914 62 DVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL----DGLQFLALADISEIAEWLSPDNAE 137 (620)
T ss_pred CCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH----hhhHHHHHHHHHHHHHhcCcchHH
Confidence 4455553333 444555777878888888888889887644 33333332 24566677777775544 455555
Q ss_pred HHHHH------HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 168 LVNAQ------VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 168 lLn~~------A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
.++.+ +.....+|+.+||+..+.++.+. +|+++..+++....+-++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~ 194 (620)
T COG3914 138 FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPE 194 (620)
T ss_pred HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchh
Confidence 55555 88888999999999999999988 78888888777666666543
No 352
>KOG4507|consensus
Probab=42.27 E-value=1.2e+02 Score=30.85 Aligned_cols=78 Identities=13% Similarity=-0.035 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
.+..++++.+.-+-.--|.+.+.+.+.+.--.+++-+.++...++. .+...|+..|+++.++.|..+..-|.+-.+.+
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l--~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL--KNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH--hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 3556677788877788899999999888877788887777666665 56888999999999998888887776655544
No 353
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=42.03 E-value=2.8e+02 Score=25.43 Aligned_cols=103 Identities=8% Similarity=-0.021 Sum_probs=77.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHhhcC----
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV---DKLNEAFYTLQDLIDKYG---- 163 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~---~~~~eA~~~~~el~~~~p---- 163 (265)
.+|++.+++.....+..++...+...+.+++++...|.+. .|-..|+...++. -.+.+...+|.+..+...
T Consensus 60 ~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~--~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~ 137 (321)
T PF08424_consen 60 HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP--ELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS 137 (321)
T ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence 3688999999999999999999999999999999888877 4445566655542 357777778877543211
Q ss_pred -------C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 164 -------S-------TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 164 -------~-------t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+ -..++..+..-..+.|..|.|..+++-.++.
T Consensus 138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 1 1224556666778899999999999999987
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.93 E-value=60 Score=17.78 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 147 KLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 147 ~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
..+.|..+|+.+...+|.++.+...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHH
Confidence 4566677777777777766655543
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=41.53 E-value=1.1e+02 Score=27.37 Aligned_cols=83 Identities=14% Similarity=0.028 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH------HHHHHHHHHH-----HcCCCC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED------TLINNMVTAG-----RLGKGN 214 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd------tl~nl~~~~~-----~~Gk~~ 214 (265)
+++++|+.+-++-....|.+......+--.++-.|.|++|..-++-+-...|. +..|++.|-. ..|+..
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~evfag~~~ 94 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEVFAGGAV 94 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHhccCCC
Confidence 67899999999988888876666666667788999999999988888777443 4457766644 344433
Q ss_pred ccC---CCChhhhcHHH
Q psy3174 215 EMS---VSPPFLFRSDE 228 (265)
Q Consensus 215 ea~---p~hp~~~~~~~ 228 (265)
-.+ |.-.|+.-+.+
T Consensus 95 Pgflg~p~p~wva~L~a 111 (273)
T COG4455 95 PGFLGGPSPEWVAALLA 111 (273)
T ss_pred CCCcCCCCHHHHHHHHH
Confidence 222 44446555544
No 356
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.01 E-value=34 Score=24.84 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-|...|+-.-..|+|+||..++.+|++.
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3456677788899999999999999985
No 357
>KOG1538|consensus
Probab=40.94 E-value=1.8e+02 Score=30.16 Aligned_cols=122 Identities=13% Similarity=0.028 Sum_probs=70.8
Q ss_pred HHHHcCChHHHHHHHHHHHc---------------c--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC---
Q psy3174 105 TYLTMYRNDLALKELKVMQD---------------K--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--- 164 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~---------------~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--- 164 (265)
-.+..=.++-|+|.|.++.. . -|++++..--.||. |++.||-.+|.+-+...-.
T Consensus 594 ~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~------gKF~EAAklFk~~G~enRAlEm 667 (1081)
T KOG1538|consen 594 EALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQ------GKFHEAAKLFKRSGHENRALEM 667 (1081)
T ss_pred HHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhh------hhHHHHHHHHHHcCchhhHHHH
Confidence 33333457888888877755 1 25666433222333 7899999999886544321
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCccC---CCChhhhcHHHHHHHHHH
Q psy3174 165 -TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTLINNMVTAGRLGKGNEMS---VSPPFLFRSDETTATLDA 235 (265)
Q Consensus 165 -t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl~nl~~~~~~~Gk~~ea~---p~hp~~~~~~~~~~~FD~ 235 (265)
|-+=+...|-=+|.-|.-+|-..+.++-.+- .|-+.+-| ....|....++ .+|-|+.-+.++....|+
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEm---LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEM---LISAGEHVKAIEICGDHGWVDMLIDIARKLDK 744 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHH---hhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence 3333445555666667666666666543321 55554433 33455555444 788888777766655554
No 358
>KOG1839|consensus
Probab=40.54 E-value=59 Score=35.55 Aligned_cols=82 Identities=13% Similarity=-0.096 Sum_probs=59.7
Q ss_pred cccHHHHHH------HHH-HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHHH---HHHHHH
Q psy3174 145 VDKLNEAFY------TLQ-DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDTL---INNMVT 206 (265)
Q Consensus 145 ~~~~~eA~~------~~~-el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdtl---~nl~~~ 206 (265)
+|.+++|+. ++. .+...||+...-+-.+|-++-+.|++++|...-.+|.-. +|++. .|+...
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~ 1024 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY 1024 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH
Confidence 477777777 666 457889999999999999999999999999987776543 88865 455544
Q ss_pred HHHcCCCCccC---------------CCChhhhcH
Q psy3174 207 AGRLGKGNEMS---------------VSPPFLFRS 226 (265)
Q Consensus 207 ~~~~Gk~~ea~---------------p~hp~~~~~ 226 (265)
.-..++...+. |+||-+.-.
T Consensus 1025 ~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~ 1059 (1236)
T KOG1839|consen 1025 EFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALS 1059 (1236)
T ss_pred HHhccCccchhhhHHHHHHhhccccCCCCCchhhh
Confidence 44444443332 889966554
No 359
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.37 E-value=1.4e+02 Score=29.89 Aligned_cols=101 Identities=17% Similarity=0.024 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHH--------HHHccCCCc---HHHHHHHHHHHHHhccccHHH--HHHHHHHHHhh
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELK--------VMQDKDEDH---TLTQLCSAWVHIANNVDKLNE--AFYTLQDLIDK 161 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~--------~~~~~~~d~---~l~~la~a~v~l~~g~~~~~e--A~~~~~el~~~ 161 (265)
.+-..++.+..+..+|+++.|+..|. .+...++.. +++.|-.+|+....+.....+ ...+++.+...
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 46778999999999999999999998 444445554 444555577766665544444 77777776554
Q ss_pred cCCCHHHHHHHHHHH-------HHcCCHHHHHHHHHHHhcC
Q psy3174 162 YGSTPMLVNAQVAVL-------IAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~-------~~~g~~eEAe~~l~~al~~ 195 (265)
...++...+..+.+. .-.-.+.++...+.++++.
T Consensus 483 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~ 523 (608)
T PF10345_consen 483 CSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKM 523 (608)
T ss_pred ccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHH
Confidence 333333333333332 2334455888888888764
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.07 E-value=2.1e+02 Score=28.55 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
...-.++.+--.+.-|++-.|.+.+..++...+..+...+--+.+--.. |.|+.++...-..-..-+.+...+-.+--
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~l--g~ye~~~~~~s~~~~~~~s~~~~~~~~~r 365 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHL--GYYEQAYQDISDVEKIIGTTDSTLRCRLR 365 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHh--hhHHHHHHHhhchhhhhcCCchHHHHHHH
Confidence 4455666677778889999999988888775443322211122222222 56777777666554444444444444444
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHH
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTL 200 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl 200 (265)
....+|||++|...-.-.+.. +|+++
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 578899999998877666644 66654
No 361
>PRK12798 chemotaxis protein; Reviewed
Probab=39.63 E-value=3.6e+02 Score=26.12 Aligned_cols=102 Identities=9% Similarity=-0.123 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH---H
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED-HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM---L 168 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~---l 168 (265)
.++.+.-...+-.....||..+|++.+..+.-..-+ ..-.+++++--++.. ......|..+|++.-=..|-|.. .
T Consensus 109 ~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~-~~dP~~Al~~lD~aRLlaPGTLvEEAA 187 (421)
T PRK12798 109 LGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMV-ATDPATALKLLDQARLLAPGTLVEEAA 187 (421)
T ss_pred CChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhc-ccCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 456676666677777779999999999887554433 333355554443333 26899999999999888887754 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
|-..-.+..+.|+.++++.+-.+=+.+
T Consensus 188 LRRsi~la~~~g~~~rf~~la~~Y~rR 214 (421)
T PRK12798 188 LRRSLFIAAQLGDADKFEALARNYLRR 214 (421)
T ss_pred HHHhhHHHHhcCcHHHHHHHHHHHHHH
Confidence 333344557888888888776655544
No 362
>KOG3616|consensus
Probab=39.46 E-value=68 Score=33.59 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~ 190 (265)
|++.+|+.+-++.... ..|..++...|--.-.+|+|.||+.++.
T Consensus 805 ~kw~da~kla~e~~~~-e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGP-EATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred ccHHHHHHHHHHhcCc-hhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 4455555444433211 1477788889999999999999998764
No 363
>KOG3364|consensus
Probab=38.99 E-value=36 Score=27.95 Aligned_cols=37 Identities=5% Similarity=0.021 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT 130 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~ 130 (265)
...||++.++.-+.+++.|+.+.+.+...++.+|++.
T Consensus 69 ~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 69 RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 4679999999999999999999999999999999886
No 364
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=38.87 E-value=46 Score=23.95 Aligned_cols=28 Identities=11% Similarity=-0.076 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-|...|+-....|+|++|..++.++++.
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556778889999999999999999984
No 365
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.64 E-value=43 Score=35.67 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCC
Q psy3174 146 DKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---------SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---------~pdtl~nl~~~~~~~Gk~ 213 (265)
..|+.|...|+.+...+|. .-..+...|++.+.+-+-.+-.+.+.+|+.. -|=-.--.+-|++.+|..
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhH
Confidence 5699999999999999994 4456677777777654433333455555543 333334667789999987
Q ss_pred CccC----------CCChhhhcHHH
Q psy3174 214 NEMS----------VSPPFLFRSDE 228 (265)
Q Consensus 214 ~ea~----------p~hp~~~~~~~ 228 (265)
.|.. |+||.+-.+.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 569 NEEIKSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHH
Confidence 7643 99997766543
No 366
>KOG2041|consensus
Probab=38.09 E-value=1.1e+02 Score=31.76 Aligned_cols=140 Identities=9% Similarity=-0.018 Sum_probs=73.8
Q ss_pred hHHhhhc-CChHHHHHHHHHHHhcCCCcCcc--------cccCCC--------HHH-HHHHHHHHHHcCChHHHHHHHHH
Q psy3174 60 KVVLEEK-LPEELSCIKVLAEYLSIPSKNGS--------SNFGTH--------LEI-NALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 60 ~~~l~ei-~~~~l~~~~~~A~~l~~~~~~e~--------~~~~~~--------lE~-~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
+.+++=| .+|-.+.++++|+|...+-.-+. +.|++- +-. -.-++.+----|++++|+|.|..
T Consensus 680 edA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 680 EDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 3344444 66777888888887543221110 222110 000 01233344456899999999987
Q ss_pred HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHH
Q psy3174 122 MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST--PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDT 199 (265)
Q Consensus 122 ~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t--~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdt 199 (265)
| |.-+.. +.+..--|.+-..+.+++--+....+. -...+.+|..+..+.+|++|.+++...-.
T Consensus 760 ~---drrDLA-------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----- 824 (1189)
T KOG2041|consen 760 A---DRRDLA-------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----- 824 (1189)
T ss_pred c---chhhhh-------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 6 333331 111111133444444433222222222 23678889999999999999998876543
Q ss_pred HHHHHHHHHHcCCCC
Q psy3174 200 LINNMVTAGRLGKGN 214 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ 214 (265)
..|++.|+.++....
T Consensus 825 ~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 825 TENQIECLYRLELFG 839 (1189)
T ss_pred hHhHHHHHHHHHhhh
Confidence 345555655555543
No 367
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.94 E-value=2.6e+02 Score=24.52 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHccCCCc----HHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---cCCCH---HHHHHHHHHHHHcCC
Q psy3174 112 NDLALKELKVMQDKDEDH----TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK---YGSTP---MLVNAQVAVLIAQDK 181 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~----~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~---~p~t~---~lLn~~A~~~~~~g~ 181 (265)
+..|...|++... .- +..++|.-+. ..|++++|..+|+.+... .+|.. .++-.+..|..+.|+
T Consensus 161 L~~A~~~f~~~~~---~R~~~~l~~~~A~ey~----~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ---NRMASYLSLEMAEEYF----RLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHhcc---chHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4455555555433 22 2234555444 237899999999999754 44532 367788899999999
Q ss_pred HHHHHHHHHHHhc
Q psy3174 182 YEEAWDLLQDTAG 194 (265)
Q Consensus 182 ~eEAe~~l~~al~ 194 (265)
.++...+--+.+.
T Consensus 234 ~~~~l~~~leLls 246 (247)
T PF11817_consen 234 VEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHHHhc
Confidence 9998887766654
No 368
>KOG0292|consensus
Probab=37.57 E-value=1.5e+02 Score=31.62 Aligned_cols=78 Identities=15% Similarity=0.006 Sum_probs=54.0
Q ss_pred HHHHHHHHHcccChhHHhhhc--CChHHHHHHHHHHHhcCCCcCcc------------------cc---------cCCCH
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEK--LPEELSCIKVLAEYLSIPSKNGS------------------SN---------FGTHL 96 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei--~~~~l~~~~~~A~~l~~~~~~e~------------------~~---------~~~~l 96 (265)
-.|.+.--+-.++|+.|+.-| +.-.-|+ ...||..++.-|. ++ ..+..
T Consensus 596 tEy~FKlALi~k~ydeVl~lI~ns~LvGqa---iIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~ 672 (1202)
T KOG0292|consen 596 TEYRFKLALLNKKYDEVLHLIKNSNLVGQA---IIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDK 672 (1202)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCcccHH---HHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcH
Confidence 345555556667888888877 2222223 3445655544222 11 26788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
++...+++..+.+|+.+.||..|++...++
T Consensus 673 d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 673 DVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 899999999999999999999999998864
No 369
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.37 E-value=1.9e+02 Score=22.97 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=36.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 137 AWVHIANNVDKLNEAFYTLQDLIDKYG--STPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 137 a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
.|+..+.. ..++..+|+.+..+.- .....+...|..+-.+|+|.+|.++++.
T Consensus 71 iWi~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 71 IWLKYADN---CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHh---cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 46655543 3446667888776644 3445677888889999999999999864
No 370
>KOG4521|consensus
Probab=36.92 E-value=2.3e+02 Score=31.19 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHc-cCCCcHHHHHHH-----------------HHHHHHhccccHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQD-KDEDHTLTQLCS-----------------AWVHIANNVDKLNEAFYTLQ 156 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~-~~~d~~l~~la~-----------------a~v~l~~g~~~~~eA~~~~~ 156 (265)
..-+.++++.+|+..|..-.|...|.++.. .++++.|-.+.- .|..+.. |..+..+|+
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhY----Ylkv~rlle 994 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHY----YLKVVRLLE 994 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHH----HHHHHHHHH
Confidence 344567778889999999999998888865 344443322211 1211110 233333333
Q ss_pred H-----------------HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCC
Q psy3174 157 D-----------------LIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 157 e-----------------l~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~~ 214 (265)
+ +.+.+|.-+.+.+.+-.=|..+|+|-+|...+.+.-.. .-+.|.-++++....|+.+
T Consensus 995 ~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 995 EHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchH
Confidence 3 33445555667777778899999999998876543222 4457888999998888864
No 371
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=36.89 E-value=82 Score=30.20 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhcC----CHHHHHHH
Q psy3174 182 YEEAWDLLQDTAGD----SEDTLINN 203 (265)
Q Consensus 182 ~eEAe~~l~~al~~----~pdtl~nl 203 (265)
|.+|+.++.+|=.. .+|+|-||
T Consensus 378 Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 378 YKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHHHhhccccchHHHHhhc
Confidence 44555555555443 44455443
No 372
>KOG1464|consensus
Probab=35.71 E-value=1e+02 Score=28.53 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=35.5
Q ss_pred ccHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 146 DKLNEAFYTLQDLIDKYG----STPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p----~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
+.+++|...|+++.+.-| |-...|-.+--+..++|+|+|-.+.+.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 567788888888776555 5566777777778888888887777776654
No 373
>KOG1839|consensus
Probab=35.35 E-value=1.3e+02 Score=32.96 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=70.8
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHH-------
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDK-----DEDHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDL------- 158 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~-----~~d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el------- 158 (265)
+++..++.-.++.++..+++.++|...=.++.-+ +-|+.-+.++.+-+.+. .+.++..-|...+..+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 5888888999999999999999988755544332 22443333332222222 1223444455444443
Q ss_pred -HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 159 -IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 159 -~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
++.||.+..+-+++..++.-.++++-|..+++.|+..
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2468888888888888888899999999999999886
No 374
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=34.76 E-value=62 Score=23.01 Aligned_cols=28 Identities=21% Similarity=0.102 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-+...|+-.-..|+|++|..++.++++.
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778889999999999999999884
No 375
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=34.32 E-value=64 Score=22.74 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+...|+..-..|++++|..++.++++.
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445678888899999999999999874
No 376
>KOG1914|consensus
Probab=33.94 E-value=4.3e+02 Score=26.76 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=60.5
Q ss_pred CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3174 110 YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLL 189 (265)
Q Consensus 110 ~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l 189 (265)
.=+..|+++|+++.+..--..-.-++.|++... ..+...-|+.+|+==..+||++|..-+.-..-+...++=..|..++
T Consensus 380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LF 458 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALF 458 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHH
Confidence 337788888888877433322223344444322 2356778888888777888888887767777778888888888888
Q ss_pred HHHhcC--CHH
Q psy3174 190 QDTAGD--SED 198 (265)
Q Consensus 190 ~~al~~--~pd 198 (265)
++++.. .||
T Consensus 459 Er~l~s~l~~~ 469 (656)
T KOG1914|consen 459 ERVLTSVLSAD 469 (656)
T ss_pred HHHHhccCChh
Confidence 888876 554
No 377
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=33.78 E-value=3.5e+02 Score=24.15 Aligned_cols=66 Identities=18% Similarity=0.028 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC----cHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED----HTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d----~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
.....+....+.+..+.|+++.|...+.++...++. .+-..+..+-+...+ |+..+|+...+++..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~--g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ--GEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 366778888999999999999999999999886521 233334444444444 678999999988876
No 378
>KOG1061|consensus
Probab=33.35 E-value=1.9e+02 Score=30.07 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-CHHH--HHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHH
Q psy3174 129 HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS-TPML--VNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDT 199 (265)
Q Consensus 129 ~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~-t~~l--Ln~~A~~~~~~g~~eEAe~~l~~al~~------~pdt 199 (265)
++-+.-|+.|+ +..+.+++.+|.++++.+.+.+.+ +... --..|++-+-..+..+.+++++.++.. +||.
T Consensus 437 epeak~amiWi-lg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dl 515 (734)
T KOG1061|consen 437 EPEAKAALIWI-LGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDL 515 (734)
T ss_pred ChHHHHHHHHH-HhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhh
Confidence 34467788999 888889999999999999988775 4332 122344555577777999999999876 7774
Q ss_pred H
Q psy3174 200 L 200 (265)
Q Consensus 200 l 200 (265)
-
T Consensus 516 r 516 (734)
T KOG1061|consen 516 R 516 (734)
T ss_pred h
Confidence 4
No 379
>KOG0276|consensus
Probab=33.33 E-value=5.6e+02 Score=26.41 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc-cccCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS-SNFGTHLEINALKIHTYLTMYRNDLALKELK 120 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~-~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~ 120 (265)
.+...++-|+..+-.|+++.+...+...+...-..+|.|+...+-++. =+...+++-.+. +.++.||++.|.++..
T Consensus 585 ~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFe---lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 585 KILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFE---LALKLGRLDIAFDLAV 661 (794)
T ss_pred eeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhh---hhhhcCcHHHHHHHHH
Q ss_pred HHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHH--------HHhhcCCCHHHH-------------HHHHHHHHHc
Q psy3174 121 VMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQD--------LIDKYGSTPMLV-------------NAQVAVLIAQ 179 (265)
Q Consensus 121 ~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~e--------l~~~~p~t~~lL-------------n~~A~~~~~~ 179 (265)
++ ++..---.++-..+.. +++.-|..-|.. +......+...| |.--.|+...
T Consensus 662 e~-----~s~~Kw~~Lg~~al~~--~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~ 734 (794)
T KOG0276|consen 662 EA-----NSEVKWRQLGDAALSA--GELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLS 734 (794)
T ss_pred hh-----cchHHHHHHHHHHhhc--ccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHc
Q ss_pred CCHHHHHHHHHH
Q psy3174 180 DKYEEAWDLLQD 191 (265)
Q Consensus 180 g~~eEAe~~l~~ 191 (265)
|++++..++|.+
T Consensus 735 g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 735 GDYEECLELLIS 746 (794)
T ss_pred CCHHHHHHHHHh
No 380
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.21 E-value=3.2e+02 Score=23.64 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCc--HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH----HHHHHHHH
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDKDEDH--TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP----MLVNAQVA 174 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~~~d~--~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~----~lLn~~A~ 174 (265)
+.+.-+-..|+.|.|.+.|..+-+-+..+ .|.++-.+-+..-. |+..+|...|.|+....|... ....--|+
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k--gdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK--GDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc--ccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 33444455566777777766665543332 44455555553333 556777777777654433111 12233455
Q ss_pred HHHHcCCHHHHHHHHHHHhcC-CHHH---HHHHHHHHHHcCCCCc
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD-SEDT---LINNMVTAGRLGKGNE 215 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~-~pdt---l~nl~~~~~~~Gk~~e 215 (265)
+++--|-|+.-..-++..-.- +|-- ---|+...+.-|+...
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~ 185 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAK 185 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHH
Confidence 555555555544443322111 3331 1244455555555443
No 381
>KOG4814|consensus
Probab=32.90 E-value=5.8e+02 Score=26.49 Aligned_cols=135 Identities=15% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHcc-C-----CCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDK-D-----EDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~-~-----~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+--+.++.+|.-+.+.|...+.. . .+-+-.| ++..|+++ ..++.|...++|+-.-.|.++.----+..
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L----~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL----EQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33445566677777776666552 1 1222233 44455555 44888999999988888877776555666
Q ss_pred HHHHcCCHHHHHHHHHHHhcC----------------CHHHHHHH-HHHHHHcCCCC--cc-------------------
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD----------------SEDTLINN-MVTAGRLGKGN--EM------------------- 216 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~----------------~pdtl~nl-~~~~~~~Gk~~--ea------------------- 216 (265)
+....|+=++|...+...... .|.|...+ +.+....|..- |.
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~~~~~~~~~~~l~~~~~~PTt~lsv~~~l~~~n~Q~I~sE~~~~~l~~~~~~q~~v~~~~ 516 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSSEDEKSTDALILAVAECKPTTDLSVQGLLMIFNSQTISSESSSQTLSILYTLQMIVKVSE 516 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhhhcccccchhHHHHhcCCCchHHHHHHHHHHHhcchhhhcchHHHHHHHhHHHHHHHHHH
Confidence 777888889998888776654 34433222 23333344331 11
Q ss_pred ---C----CCChhhhcHHHHHHHHHHHHhhcc
Q psy3174 217 ---S----VSPPFLFRSDETTATLDACGLQSN 241 (265)
Q Consensus 217 ---~----p~hp~~~~~~~~~~~FD~~~~~~~ 241 (265)
+ |.-|-+.....+..+|||..+=|.
T Consensus 517 ~e~L~F~L~~~~~~~~~~~ka~e~~~~~~Cln 548 (872)
T KOG4814|consen 517 EEPLEFFLNYLPTVQKLLQKAVEFLKTVKCLN 548 (872)
T ss_pred HhHHHHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence 0 666666677788899998877663
No 382
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=32.67 E-value=2.5e+02 Score=22.15 Aligned_cols=93 Identities=13% Similarity=-0.063 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDE-DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~-d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
++-.+.+--.+.+.++|..+..=.-..+. +..++. ..+-...++|+|++|+ ... .+..+|.+.-..|.|--
T Consensus 9 LAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~l---Ir~~sLmNrG~Yq~AL----l~~-~~~~~pdL~p~~AL~a~ 80 (116)
T PF09477_consen 9 LAELALMATGHHCHQEANTIADWLEQEGEMEEVVAL---IRLSSLMNRGDYQEAL----LLP-QCHCYPDLEPWAALCAW 80 (116)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHH---HHHHHHHHTT-HHHHH----HHH-TTS--GGGHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHH---HHHHHHHhhHHHHHHH----Hhc-ccCCCccHHHHHHHHHH
Confidence 34445555668999999998887766555 233322 2222234668999992 122 22334555556778999
Q ss_pred HcCCHHHHHHHHHHHhcC-CHHH
Q psy3174 178 AQDKYEEAWDLLQDTAGD-SEDT 199 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~-~pdt 199 (265)
+.|--.+++.-+.+.-.. +|..
T Consensus 81 klGL~~~~e~~l~rla~~g~~~~ 103 (116)
T PF09477_consen 81 KLGLASALESRLTRLASSGSPEL 103 (116)
T ss_dssp HCT-HHHHHHHHHHHCT-SSHHH
T ss_pred hhccHHHHHHHHHHHHhCCCHHH
Confidence 999999999998855444 7764
No 383
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.68 E-value=4.1e+02 Score=24.32 Aligned_cols=131 Identities=10% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC-----CHHHHHH
Q psy3174 113 DLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD-----KYEEAWD 187 (265)
Q Consensus 113 d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g-----~~eEAe~ 187 (265)
+.-..+|.++++.+|++....+. ++.++..-...++....++++...+|.++.++- +.+...|+ .+++-..
T Consensus 48 E~klsilerAL~~np~~~~L~l~--~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~--~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLG--YLEEGEKVWDSEKLAKKWEELLFKNPGSPELWR--EYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHH--HHHHHHHHHhccCcHHHHHH
Confidence 33445788888889988754443 555554445667778889999999998887653 33444444 5788888
Q ss_pred HHHHHhcC------CH--------H-------HHHHHHHHHHHcCCCCccC-------------CCChhhhcHHHHHHHH
Q psy3174 188 LLQDTAGD------SE--------D-------TLINNMVTAGRLGKGNEMS-------------VSPPFLFRSDETTATL 233 (265)
Q Consensus 188 ~l~~al~~------~p--------d-------tl~nl~~~~~~~Gk~~ea~-------------p~hp~~~~~~~~~~~F 233 (265)
.+.+++.. .. + ++.++.......|-.+-+. |.+-......++...|
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~f 203 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESF 203 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHH
Confidence 88888775 11 1 3345555666666654433 6654444444667777
Q ss_pred HHHHhhccccCCCC
Q psy3174 234 DACGLQSNSESTPR 247 (265)
Q Consensus 234 D~~~~~~~~~~~~l 247 (265)
..+=+.=.|-++..
T Consensus 204 e~FWeS~vpRiGE~ 217 (321)
T PF08424_consen 204 EEFWESEVPRIGEP 217 (321)
T ss_pred HHHhCcCCCCCCCC
Confidence 76655433334444
No 384
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=31.43 E-value=71 Score=21.62 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
++++-....+..|+.++|+..+.++|+
T Consensus 34 ~~~g~~~~~~~~g~~~~A~~~l~~~L~ 60 (60)
T PF10414_consen 34 FFDGPFAELVLAGDEEEAEALLEQALD 60 (60)
T ss_dssp HT-HHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHcCHHHHHHHCCCHHHHHHHHHHhhC
Confidence 346777788999999999999999874
No 385
>KOG1811|consensus
Probab=30.93 E-value=4.9e+02 Score=26.88 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=64.6
Q ss_pred HHHHHcCChHHHHHHHHHHHc--cCCCcHHHHHHHHHHH-HHhccccHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHc
Q psy3174 104 HTYLTMYRNDLALKELKVMQD--KDEDHTLTQLCSAWVH-IANNVDKLNEAFYTLQDLIDKYG-STPMLVNAQVAVLIAQ 179 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~--~~~d~~l~~la~a~v~-l~~g~~~~~eA~~~~~el~~~~p-~t~~lLn~~A~~~~~~ 179 (265)
.+-..+||.|+-.-.+-.... -.-|++.-+++.-.+- -.-..++|+-|. ++..+.+ ++...+...|.+.++.
T Consensus 525 L~diwigkadlLn~Ll~a~i~hv~SLDdIad~~asecLRdqLie~ErYqlaV----~mckKc~iD~f~aW~AWGlA~Lk~ 600 (1141)
T KOG1811|consen 525 LCDIWIGKADLLNILLAAAIRHVPSLDDIADPAASECLRDQLIEAERYQLAV----EMCKKCGIDTFGAWHAWGLACLKA 600 (1141)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCCHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCcccHHHHHHHHHHHh
Confidence 356667888887777777655 2335555555543321 001113444443 4555656 6667888889999999
Q ss_pred CCHHHHHHHHHHHhcC----CHHHHHHHH
Q psy3174 180 DKYEEAWDLLQDTAGD----SEDTLINNM 204 (265)
Q Consensus 180 g~~eEAe~~l~~al~~----~pdtl~nl~ 204 (265)
+++..|..-+.++++. -||++.-++
T Consensus 601 e~~aaAR~KFkqafklkgedipdvi~dii 629 (1141)
T KOG1811|consen 601 ENLAAAREKFKQAFKLKGEDIPDVIFDII 629 (1141)
T ss_pred hhHHHHHHHHHHHhCCCCCccchHHHHHH
Confidence 9999999999999998 688775443
No 386
>KOG4814|consensus
Probab=30.91 E-value=2.4e+02 Score=29.14 Aligned_cols=55 Identities=27% Similarity=0.289 Sum_probs=46.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 103 IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 103 v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
.-||+...++|.|...+.++-+.+|.++++|+-..-.-++. ++-.+|......+.
T Consensus 401 ~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E--~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 401 QVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAE--DKSEEALTCLQKIK 455 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 45899999999999999999999999999998886665555 67888888777653
No 387
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=30.54 E-value=3.9e+02 Score=24.28 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
++.+..--+.+.+.-.++-.+++... -+...+.-.++..+....-+.....++++.|+..-+.+....|.+|.-.---
T Consensus 144 g~~l~~~~l~~~l~~~~~~~ael~~~--~L~~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDr 221 (269)
T COG2912 144 GGTLSQHELQEWLKGTIGPSAELLPE--DLKQASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDR 221 (269)
T ss_pred CCcccHHHHHHHHHhccCcHhhhhhh--hhhhccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCc
Confidence 33444444444444445533332222 2222333334443333222233344789999999999999999888766678
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
|.+|.++|.+.-|...+.-..+.
T Consensus 222 GliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 222 GLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHhcCCchhhHHHHHHHHHh
Confidence 88999999999999999887776
No 388
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=30.10 E-value=2e+02 Score=21.79 Aligned_cols=25 Identities=20% Similarity=0.249 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..|.+.+..|+|+.|+..+.++.+.
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455566677777777777776554
No 389
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=30.09 E-value=1.4e+02 Score=30.22 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLI 201 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~ 201 (265)
..+|.|.++.|.+.||..+|.+.... ..+.|+
T Consensus 504 vQLGLcAFR~G~I~eah~~L~el~~s~r~kELLa 537 (595)
T PF05470_consen 504 VQLGLCAFRAGLIKEAHQCLSELCSSGRVKELLA 537 (595)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcccchhhhhc
Confidence 46889999999999999999999875 666664
No 390
>KOG0687|consensus
Probab=29.75 E-value=4.7e+02 Score=24.78 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc----C--CCcHHHHHHHHHHH--HHhccccHHHHHHHHHHHHhhcCCC
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDK----D--EDHTLTQLCSAWVH--IANNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~----~--~d~~l~~la~a~v~--l~~g~~~~~eA~~~~~el~~~~p~t 165 (265)
.-.|++...+.-|+++|+.+.|.+.+++..+- + =|=.++.+-++++. -..-++.++.|-.++++=++=.-.+
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 34678888899999999999999999887662 2 23344444444332 2222366777877777754321111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 166 PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
- +-.-.|.-.|.-.+|.+|..++.+++..
T Consensus 182 R-lKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 182 R-LKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred h-HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 1 2223445577888999999999999876
No 391
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=28.80 E-value=4.2e+02 Score=23.56 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCc
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLIN--NMVTAGRLGKGNE 215 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~n--l~~~~~~~Gk~~e 215 (265)
+|.+-..+|..+...|++.+|+..+... .+|+..+. ++..+...|.+.|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~--~~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG--TDPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHTSS--
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc--CChhHHHHHHHHHHHHHhcCCcc
Confidence 6778888899999999999998876422 25554433 5555666666554
No 392
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=27.93 E-value=96 Score=21.79 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+...|+-.-..|++++|..++.++++.
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677788889999999999999884
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.86 E-value=86 Score=21.55 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
.-.+.-|+.+|++|.|.+.++.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456678889999999988887744
No 394
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.24 E-value=4.1e+02 Score=23.00 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHHHHhh-cCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy3174 146 DKLNEAFYTLQDLIDK-YGSTPM-LVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMV 205 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~-~p~t~~-lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~ 205 (265)
++..+|+.-|.++... |+.-|. .+.-.|.+..+.|+..+|...+.++-.. -|....+++.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 6799999999999766 555444 5677889999999999999999998776 6766655443
No 395
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=26.53 E-value=3.9e+02 Score=24.39 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
+.-.+..+...+|+|.+...+++..+.+|=+.-. ++..++. -.|+...|...|+.+...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~----~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL----VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH----HcCCchHHHHHHHHHHHH
Confidence 3345568888999999999999999998855433 3333333 347899999999998764
No 396
>KOG0985|consensus
Probab=26.49 E-value=4.2e+02 Score=29.15 Aligned_cols=92 Identities=13% Similarity=0.075 Sum_probs=67.0
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINN 203 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl 203 (265)
+++.+-.|+|.|-+ .+++..+|...|-+. ++|..+-..-.+.-+-|+|++-..+|.-|-.+ .|.+=.-|
T Consensus 1102 n~p~vWsqlakAQL----~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQL----QGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSEL 1172 (1666)
T ss_pred CChHHHHHHHHHHH----hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHH
Confidence 55666556655554 457888888877543 44444444555677899999999999988776 77788888
Q ss_pred HHHHHHcCCCCccC-----CCChhhhcH
Q psy3174 204 MVTAGRLGKGNEMS-----VSPPFLFRS 226 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~-----p~hp~~~~~ 226 (265)
|..+...|+..|-. |+|.-+...
T Consensus 1173 i~AyAkt~rl~elE~fi~gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIAGPNVANIQQV 1200 (1666)
T ss_pred HHHHHHhchHHHHHHHhcCCCchhHHHH
Confidence 99999999987632 888777665
No 397
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=26.48 E-value=3.2e+02 Score=21.41 Aligned_cols=87 Identities=11% Similarity=-0.112 Sum_probs=56.8
Q ss_pred HHHHcCChHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDE-DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~-d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
+--.+++.++|..+-.=.-..++ +..++.+-.+- ..++|+|++|..+-+.+ + +|.+--.+|.|--+.|--.
T Consensus 14 ~gTG~HcHqEA~tIAdwL~~~~~~~E~v~lIRlsS---LmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl~s 85 (115)
T TIGR02508 14 IGTGHHCHQEANTIADWLHLKGESEEAVQLIRLSS---LMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGLGS 85 (115)
T ss_pred HHccchHHHHHHHHHHHHhcCCchHHHHHHHHHHH---HHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhccHH
Confidence 33347788888876655444443 34443333322 24668999999877666 2 5556666788999999999
Q ss_pred HHHHHHHHHhcC-CHHH
Q psy3174 184 EAWDLLQDTAGD-SEDT 199 (265)
Q Consensus 184 EAe~~l~~al~~-~pdt 199 (265)
+++.-+.+.-.. +|..
T Consensus 86 ~l~~rl~rla~sg~p~l 102 (115)
T TIGR02508 86 ALESRLNRLAASGDPRL 102 (115)
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 888887666655 7763
No 398
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.95 E-value=69 Score=28.80 Aligned_cols=38 Identities=8% Similarity=-0.218 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT 130 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~ 130 (265)
|++...++..+....+.|++|.|.+.|.+.++++|++.
T Consensus 26 p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 26 PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 56667778888888999999999999999999998764
No 399
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=25.20 E-value=1.4e+02 Score=23.25 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 166 PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..+..-.|.-+.+.|+|++|+..+++|-+.
T Consensus 19 ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~~ 48 (105)
T COG1447 19 ARSKAYEALKAAKEGDFEEAEELIQEANDA 48 (105)
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455677789999999999999988654
No 400
>KOG4422|consensus
Probab=24.90 E-value=6.9e+02 Score=24.77 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=30.3
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 161 KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 161 ~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.-.+++..+|..|..+.+-|++++|.+++.-.+..
T Consensus 517 ~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 517 AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 34578889999999999999999999999877654
No 401
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=24.78 E-value=6.8e+02 Score=24.67 Aligned_cols=112 Identities=14% Similarity=0.053 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-------------CCc-------HHHHHHHHHHHHHhccccHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKD-------------EDH-------TLTQLCSAWVHIANNVDKLNEAFY 153 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-------------~d~-------~l~~la~a~v~l~~g~~~~~eA~~ 153 (265)
..+..-.-=+....+++.|..|.--|+.++++- .++ +-++|...|+-+ ++..-|+.
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~----rkpdlALn 249 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRM----RKPDLALN 249 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhc----CCCchHHH
Confidence 345555555677778899999999999998841 122 223444444432 66788888
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHH
Q psy3174 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGR 209 (265)
Q Consensus 154 ~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~ 209 (265)
.-.+-.-..|.++.--..+|.|+..+.||.||..-..-|.=+ +..-+..+|-++|.
T Consensus 250 h~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 250 HSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred HHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 777777788988887778999999999999998866554322 33345556666654
No 402
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=24.55 E-value=7.1e+02 Score=24.82 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=73.7
Q ss_pred cccCCCHHHHHHHHH-----------HHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 90 SNFGTHLEINALKIH-----------TYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 90 ~~~~~~lE~~al~v~-----------~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
+++....|+++.+.- .-++..-+..|++++-+..+..=-.+-..++.|++.. ..++.+.-|+.+|+--
T Consensus 380 ~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~-~~~~d~~ta~~ifelG 458 (660)
T COG5107 380 NNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEY-YATGDRATAYNIFELG 458 (660)
T ss_pred CCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHH-HhcCCcchHHHHHHHH
Confidence 344557777666544 1233445889999999997765222222344555543 3347789999999988
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
...||+++..-+---.-++..++-+.|..+++.+.++
T Consensus 459 l~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 459 LLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 8899998887776666788999999999999877665
No 403
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=24.50 E-value=1.3e+02 Score=22.77 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+..-.|.-..+.|+|++|...+.+|-+.
T Consensus 16 rs~~~eAl~~a~~g~fe~A~~~l~ea~~~ 44 (97)
T cd00215 16 RSKALEALKAAKEGDFAEAEELLEEANDS 44 (97)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666789999999999999998764
No 404
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=24.30 E-value=1.3e+02 Score=22.86 Aligned_cols=29 Identities=7% Similarity=-0.003 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+....|.-..+.|+|++|.+.+.+|-+.
T Consensus 18 rs~~~eAl~~a~~gdfe~A~~~l~eA~~~ 46 (99)
T TIGR00823 18 RSKALEALKAAKAGDFAKARALVEQAGMC 46 (99)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666789999999999999998764
No 405
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=23.14 E-value=8.1e+02 Score=24.96 Aligned_cols=96 Identities=13% Similarity=-0.045 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3174 112 NDLALKELKVMQDKDEDHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~ 190 (265)
...|.-.+..-..+++.+.-..++.- ..+. ..-+.-..++-.++......|......+++|.+.+.-|....|...+.
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33344444444456777764444432 2222 222556678888888888888888888899999999999988888777
Q ss_pred H-HhcC---CHHHHHHHHHHHH
Q psy3174 191 D-TAGD---SEDTLINNMVTAG 208 (265)
Q Consensus 191 ~-al~~---~pdtl~nl~~~~~ 208 (265)
+ +... +..++.+++.++.
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHH
Confidence 7 4443 6668888855555
No 406
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.99 E-value=4.3e+02 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
+.++..+++|++++|+.-+.+|-+
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 445556666777777766666544
No 407
>KOG3824|consensus
Probab=22.95 E-value=3.7e+02 Score=25.40 Aligned_cols=75 Identities=5% Similarity=-0.152 Sum_probs=47.8
Q ss_pred CCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 93 GTHLEINALK--IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 93 ~~~lE~~al~--v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.+-.|++..+ ++=..+.|+.+.|.+++..++.++|+++-..+-.+-. ..-...+=+|-+.|-++..-.|.....|
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f--~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQF--REMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHH--HHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 3455665443 4445568999999999999999999998443333222 1122456677777777766666544443
No 408
>KOG2581|consensus
Probab=22.71 E-value=3.9e+02 Score=26.07 Aligned_cols=84 Identities=14% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHhhcCCCHHH----
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-----DKLNEAFYTLQDLIDKYGSTPML---- 168 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-----~~~~eA~~~~~el~~~~p~t~~l---- 168 (265)
++.++...|+..+-+|.|.+...+. .-|+....+ -.|......|. ..|.+|...|-....+.|....+
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~--~~pe~~snn-e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q 287 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKS--VYPEAASNN-EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQ 287 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcc--cCccccccH-HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHH
Q ss_pred --HHHHHHHHHHcCCHHH
Q psy3174 169 --VNAQVAVLIAQDKYEE 184 (265)
Q Consensus 169 --Ln~~A~~~~~~g~~eE 184 (265)
--.+-++-+.+|.+||
T Consensus 288 ~v~k~~ivv~ll~geiPe 305 (493)
T KOG2581|consen 288 QVNKLMIVVELLLGEIPE 305 (493)
T ss_pred HHHHHHHHHHHHcCCCcc
No 409
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=22.53 E-value=1.5e+02 Score=22.88 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
......|.-..+.|+|++|+..+.+|-+.
T Consensus 21 rs~~~eAl~~ak~gdf~~A~~~l~eA~~~ 49 (104)
T PRK09591 21 RTEVHEAFAAMREGNFDLAEQKLNQSNEE 49 (104)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666788999999999999999765
No 410
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=22.33 E-value=2.9e+02 Score=29.64 Aligned_cols=77 Identities=17% Similarity=0.076 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH-------hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQLCSAWVHIA-------NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~-------~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
+...|++.++.+.=+-+-+.|...|++..++- +.+..++|=..+.+++....| . ...-.+.+++|||+
T Consensus 844 ~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~----~-~rry~ID~hLkRy~ 918 (928)
T PF04762_consen 844 DPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPP----L-YRRYKIDDHLKRYE 918 (928)
T ss_pred ChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCCh----h-heeeeHhhhhCCHH
Confidence 34444444444433444444444444433332 333555555555555554422 1 13455788899999
Q ss_pred HHHHHHHHH
Q psy3174 184 EAWDLLQDT 192 (265)
Q Consensus 184 EAe~~l~~a 192 (265)
.|...|.++
T Consensus 919 kAL~~L~~~ 927 (928)
T PF04762_consen 919 KALRHLSAC 927 (928)
T ss_pred HHHHHHHhh
Confidence 998877653
No 411
>PRK12798 chemotaxis protein; Reviewed
Probab=22.06 E-value=6.5e+02 Score=24.42 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=79.2
Q ss_pred HHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHH-HHHHHHHHHHHcCCHH
Q psy3174 106 YLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPM-LVNAQVAVLIAQDKYE 183 (265)
Q Consensus 106 ~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~-lLn~~A~~~~~~g~~e 183 (265)
.+.-|.+.--++++..-..-..|..+..-+.+|+. |+..+|...+-.+...+ |.... -+.......+...+..
T Consensus 91 ~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~~-----Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~ 165 (421)
T PRK12798 91 LLSGGNPATLRKLLARDKLGNFDQRLADGALAYLS-----GRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPA 165 (421)
T ss_pred HhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHHc-----CCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHH
Confidence 34456777666666665444556676666666663 78999999998886553 33333 3444555678888999
Q ss_pred HHHHHHHHHhcCCHHHHH------HHHHHHHHcCCCCccC----------CCChhhhcHH
Q psy3174 184 EAWDLLQDTAGDSEDTLI------NNMVTAGRLGKGNEMS----------VSPPFLFRSD 227 (265)
Q Consensus 184 EAe~~l~~al~~~pdtl~------nl~~~~~~~Gk~~ea~----------p~hp~~~~~~ 227 (265)
+|...|.++-=.-|-||+ ..+.+....|+.+... ...||.-++.
T Consensus 166 ~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~ 225 (421)
T PRK12798 166 TALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFA 225 (421)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHH
Confidence 999999988555777664 6677888888876422 6667766553
No 412
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=21.93 E-value=1.5e+02 Score=21.30 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+...|+-.-..|+|++|..++.++++.
T Consensus 8 ~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 8 ELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555667777789999999999999884
No 413
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=21.90 E-value=1.3e+02 Score=30.10 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---------------CHHHH-------HHHHH------HHHHcCCCC
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---------------SEDTL-------INNMV------TAGRLGKGN 214 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---------------~pdtl-------~nl~~------~~~~~Gk~~ 214 (265)
||-..++...-.||...|.+.+|+...++++.+ .+++- +.|++ |..--.|+.
T Consensus 194 ~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~eL~qLE~ms~s~~s~es~~~f~eA~ikm~~mifkr~vfesRRk~K 273 (542)
T PF14858_consen 194 PWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDELRQLENMSSSPPSEESQRIFREATIKMAVMIFKRAVFESRRKPK 273 (542)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHhhHhhhhcccCCc
Confidence 566667888889999999999999999988874 23322 23322 222222333
Q ss_pred ccC-----------CCChhhhcHHH--HHHHHHHHHhhccccCCCCCcccchh
Q psy3174 215 EMS-----------VSPPFLFRSDE--TTATLDACGLQSNSESTPRDSGERKI 254 (265)
Q Consensus 215 ea~-----------p~hp~~~~~~~--~~~~FD~~~~~~~~~~~~l~~~~~~~ 254 (265)
..+ .++||-...-+ ...-||--+++|-+.++.|.+-.|.+
T Consensus 274 ~~~RpK~r~nlk~~~~~~WPRT~TErLL~emFd~taaqFLAILEALsds~RR~ 326 (542)
T PF14858_consen 274 GYFRPKLRVNLKEAQNLPWPRTPTERLLMEMFDGTAAQFLAILEALSDSNRRT 326 (542)
T ss_pred cccCccccCCHHHhcCCCCCCchHHHHHHHHccccHHHHHHHHHHhcccccCc
Confidence 222 77788777655 67889999999998877776555544
No 414
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=21.88 E-value=59 Score=26.38 Aligned_cols=43 Identities=19% Similarity=0.426 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcccChhH---HhhhcCChHHHHHHHHHHHhcCCCcC
Q psy3174 45 KDFYVCRSYLAQKKYKV---VLEEKLPEELSCIKVLAEYLSIPSKN 87 (265)
Q Consensus 45 ~~~~~~Raylalg~~~~---~l~ei~~~~l~~~~~~A~~l~~~~~~ 87 (265)
-.++.+|+|...++|+- ++....+|....+++++.||+..+++
T Consensus 76 d~yllAksyFD~kEy~RaA~~L~~~~s~~~~FL~lYs~YLa~EKr~ 121 (142)
T PF04049_consen 76 DKYLLAKSYFDCKEYDRAAHVLKDCKSPKALFLRLYSRYLAGEKRK 121 (142)
T ss_pred HHHHHHHHHhchhHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHH
Confidence 34556899999999984 44444677788899999999876554
No 415
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=21.88 E-value=4.6e+02 Score=21.67 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
.-|-+-+..-++...||-|.-.++++....- .++..+..+|.||-.+ |...+|-.+..++.++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~kl----g~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKL----GNTREANELLKEACEK 149 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHT----T-HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh----cchhhHHHHHHHHHHh
Confidence 3356666667888999999999999998742 3456777888887755 5577888888887765
No 416
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=21.65 E-value=6.5e+02 Score=23.27 Aligned_cols=66 Identities=15% Similarity=-0.036 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
+.+-+|..+.+....+.|..+.+.-.+..+|..+|-.+.|...+. .|+. --|||.+++.-....+.
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~-~L~iK~IQ~DTL~h~~~~r~~~~~ 265 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE-SLDIKNIQLDTLGHLILDRLSTLG 265 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH-hcChHHHHHHHhHHHHHHHHhccC
Confidence 556788999999999999888888888889999999999999884 4444 67788777665554443
No 417
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=21.14 E-value=1.6e+02 Score=23.13 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 166 PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..++.-.|.-..+.|+|++|+..+.+|-+.
T Consensus 31 ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~ 60 (115)
T PRK10454 31 ARSLAYAALKQAKQGDFAAAKAMMDQSRMA 60 (115)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345556677789999999999999999765
No 418
>KOG3807|consensus
Probab=20.58 E-value=7.6e+02 Score=23.65 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH-------------hhcC-
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLI-------------DKYG- 163 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~-------------~~~p- 163 (265)
-+...|..-+-.++..-.+.-..+++++++-. .+||-++... ...-+|+.+|++.. +.++
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA-----~AyvLLAEEEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~ 261 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECA-----TAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSP 261 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhh-----hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc
Confidence 34444555665566666666667777776644 4666555221 44667777776642 1111
Q ss_pred --------CC-HH--HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 164 --------ST-PM--LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 164 --------~t-~~--lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+| .. +--.+|-|-.++||..||.++++....-
T Consensus 262 ~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 262 QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 22 22 3356899999999999999999887664
No 419
>KOG4422|consensus
Probab=20.57 E-value=8.4e+02 Score=24.19 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=66.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh-hcCCCHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD-EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID-KYGSTPMLV 169 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~-~~p~t~~lL 169 (265)
.|++.|.++..+.=+++--..+-|...|++.-+.. .-.+ .--.+.+++ ..|..-..+..|+.+ +-..+...+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~--~aFN~lI~~----~S~~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYR--EAFNGLIGA----SSYSVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeH--HhhhhhhhH----HHhhccHHHHHHHHHhhcCCchHhH
Confidence 38899988887777777677888999998876531 1122 111222322 224444667777754 445677789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
|.+-.|.-.-|+|+.|.....+++-
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~ 301 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILG 301 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999999999998888774
No 420
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=20.23 E-value=3.8e+02 Score=25.77 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHcc-CCCcHHHHHH--------HHHHHHHhccccHHHHHHHHHHHHhhcCC
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDK-DEDHTLTQLC--------SAWVHIANNVDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~-~~d~~l~~la--------~a~v~l~~g~~~~~eA~~~~~el~~~~p~ 164 (265)
.+-++-++|++++++++++..++.+... .+|....+.+ .+.+.+.. +++.+|+--+.+.-...|+
T Consensus 179 iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~--en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 179 IANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLN--ENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHH--HhHHHHHHHHHHHHHhChh
Confidence 3456778999999999999999998773 3454433332 33344444 6788888888887655554
Done!