Query psy3174
Match_columns 265
No_of_seqs 142 out of 309
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:15:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mv2_B Coatomer subunit epsilo 100.0 5.4E-47 1.9E-51 345.3 19.6 229 6-243 11-309 (310)
2 3mkr_A Coatomer subunit epsilo 100.0 2.7E-41 9.2E-46 302.9 26.2 234 10-243 1-291 (291)
3 3hym_B Cell division cycle pro 99.6 4.8E-14 1.6E-18 122.9 18.7 232 9-243 22-296 (330)
4 1w3b_A UDP-N-acetylglucosamine 99.6 1.3E-13 4.3E-18 124.8 21.1 122 93-216 234-358 (388)
5 2pl2_A Hypothetical conserved 99.6 9E-14 3.1E-18 117.8 18.8 184 11-217 7-205 (217)
6 3hym_B Cell division cycle pro 99.6 7.7E-14 2.6E-18 121.6 17.4 211 14-227 62-310 (330)
7 1w3b_A UDP-N-acetylglucosamine 99.6 7.4E-14 2.5E-18 126.3 17.5 199 15-216 6-222 (388)
8 3vtx_A MAMA; tetratricopeptide 99.6 7.9E-13 2.7E-17 107.4 20.3 171 6-198 1-173 (184)
9 2q7f_A YRRB protein; TPR, prot 99.5 4.2E-13 1.4E-17 112.3 18.5 190 16-227 31-233 (243)
10 3ieg_A DNAJ homolog subfamily 99.5 1.1E-12 3.8E-17 115.0 21.4 133 92-226 184-345 (359)
11 3ieg_A DNAJ homolog subfamily 99.5 2.1E-12 7.3E-17 113.2 22.4 194 9-224 3-225 (359)
12 4eqf_A PEX5-related protein; a 99.5 9.3E-14 3.2E-18 124.4 13.7 204 11-217 67-301 (365)
13 1fch_A Peroxisomal targeting s 99.5 2E-13 6.7E-18 121.5 13.9 206 17-225 34-289 (368)
14 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-12 5.5E-17 109.9 18.8 134 92-227 101-249 (252)
15 2y4t_A DNAJ homolog subfamily 99.5 2.2E-12 7.6E-17 118.0 20.9 135 92-228 207-370 (450)
16 1fch_A Peroxisomal targeting s 99.5 3.2E-12 1.1E-16 113.6 21.1 203 11-216 66-349 (368)
17 2pl2_A Hypothetical conserved 99.5 4.2E-13 1.5E-17 113.6 14.6 162 46-226 8-190 (217)
18 3uq3_A Heat shock protein STI1 99.5 1.2E-12 4.1E-17 110.0 16.4 190 11-216 7-226 (258)
19 3u4t_A TPR repeat-containing p 99.5 7.7E-13 2.6E-17 113.0 15.4 214 10-226 4-260 (272)
20 2xpi_A Anaphase-promoting comp 99.5 9.7E-13 3.3E-17 124.9 17.4 207 16-225 313-554 (597)
21 3vtx_A MAMA; tetratricopeptide 99.5 2.2E-12 7.5E-17 104.7 16.3 148 49-217 11-161 (184)
22 3cv0_A Peroxisome targeting si 99.5 6.3E-13 2.2E-17 115.6 13.7 204 9-215 21-258 (327)
23 4i17_A Hypothetical protein; T 99.5 3E-12 1E-16 107.6 16.6 183 5-206 3-223 (228)
24 2xpi_A Anaphase-promoting comp 99.4 3E-12 1E-16 121.5 18.2 208 16-226 347-589 (597)
25 2vq2_A PILW, putative fimbrial 99.4 2.1E-11 7.2E-16 100.2 21.0 190 15-226 15-221 (225)
26 2y4t_A DNAJ homolog subfamily 99.4 9E-12 3.1E-16 113.9 20.4 188 16-225 34-249 (450)
27 2gw1_A Mitochondrial precursor 99.4 1E-12 3.6E-17 121.6 14.2 208 16-227 245-489 (514)
28 3cv0_A Peroxisome targeting si 99.4 2.2E-12 7.5E-17 112.1 15.0 198 16-216 63-305 (327)
29 4eqf_A PEX5-related protein; a 99.4 2.6E-12 8.8E-17 115.0 15.6 196 16-214 107-344 (365)
30 3as5_A MAMA; tetratricopeptide 99.4 1.8E-11 6E-16 97.2 17.5 150 46-216 11-163 (186)
31 2gw1_A Mitochondrial precursor 99.4 1E-11 3.5E-16 114.9 18.0 203 21-225 202-453 (514)
32 4abn_A Tetratricopeptide repea 99.4 2.4E-12 8.1E-17 122.0 13.8 208 9-239 54-314 (474)
33 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.3E-12 2.1E-16 107.0 15.1 193 21-217 18-235 (275)
34 4ga2_A E3 SUMO-protein ligase 99.4 7.5E-13 2.6E-17 106.1 8.5 109 105-215 6-117 (150)
35 3qky_A Outer membrane assembly 99.4 1.2E-11 4.1E-16 106.4 16.2 178 45-241 17-249 (261)
36 4gyw_A UDP-N-acetylglucosamine 99.4 2.6E-11 8.8E-16 121.6 20.2 154 43-217 9-165 (723)
37 3as5_A MAMA; tetratricopeptide 99.4 9.3E-11 3.2E-15 93.0 19.6 162 15-198 15-176 (186)
38 4gyw_A UDP-N-acetylglucosamine 99.4 4.4E-12 1.5E-16 127.1 14.3 134 91-226 4-150 (723)
39 3fp2_A TPR repeat-containing p 99.4 1.4E-11 4.8E-16 115.0 16.5 172 22-195 216-407 (537)
40 4gco_A Protein STI-1; structur 99.4 1.5E-11 5E-16 96.1 13.9 112 93-206 10-124 (126)
41 4i17_A Hypothetical protein; T 99.4 4.4E-11 1.5E-15 100.4 17.7 148 46-213 10-169 (228)
42 3qky_A Outer membrane assembly 99.4 1.6E-11 5.3E-16 105.6 15.1 188 8-213 14-248 (261)
43 2q7f_A YRRB protein; TPR, prot 99.3 7.5E-11 2.6E-15 98.4 18.1 174 16-211 65-241 (243)
44 3gyz_A Chaperone protein IPGC; 99.3 5.5E-12 1.9E-16 102.4 10.6 107 90-198 30-136 (151)
45 3fp2_A TPR repeat-containing p 99.3 2E-11 6.9E-16 113.9 15.8 207 16-226 251-501 (537)
46 3uq3_A Heat shock protein STI1 99.3 2.4E-11 8.2E-16 101.9 14.0 179 16-196 46-237 (258)
47 2vyi_A SGTA protein; chaperone 99.3 6.2E-11 2.1E-15 88.8 14.8 119 93-213 9-130 (131)
48 4ga2_A E3 SUMO-protein ligase 99.3 1.5E-11 5.3E-16 98.4 11.8 119 93-213 28-150 (150)
49 2ho1_A Type 4 fimbrial biogene 99.3 1.2E-10 4E-15 98.3 17.8 180 16-198 45-241 (252)
50 2lni_A Stress-induced-phosphop 99.3 6.2E-11 2.1E-15 89.7 14.3 119 92-212 12-133 (133)
51 3urz_A Uncharacterized protein 99.3 3E-11 1E-15 101.4 13.5 118 94-213 2-138 (208)
52 1na0_A Designed protein CTPR3; 99.3 1.5E-10 5.3E-15 85.9 16.0 115 95-211 8-125 (125)
53 2h6f_A Protein farnesyltransfe 99.3 5.4E-11 1.8E-15 110.5 15.4 184 21-226 110-314 (382)
54 2pzi_A Probable serine/threoni 99.3 6.4E-11 2.2E-15 117.3 16.1 172 19-213 402-584 (681)
55 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.7E-10 5.8E-15 97.7 16.4 171 10-198 5-216 (225)
56 3gyz_A Chaperone protein IPGC; 99.3 4.7E-12 1.6E-16 102.9 5.7 108 108-217 14-124 (151)
57 2h6f_A Protein farnesyltransfe 99.3 5.1E-11 1.8E-15 110.7 13.5 123 93-217 94-220 (382)
58 3mkr_A Coatomer subunit epsilo 99.3 1.1E-10 3.8E-15 103.6 15.0 105 92-198 160-267 (291)
59 3urz_A Uncharacterized protein 99.2 4.4E-10 1.5E-14 94.2 17.3 169 9-198 4-189 (208)
60 4abn_A Tetratricopeptide repea 99.2 1.6E-10 5.3E-15 109.5 16.1 124 91-217 97-241 (474)
61 2fo7_A Synthetic consensus TPR 99.2 1.9E-10 6.6E-15 86.0 13.4 117 97-215 2-121 (136)
62 2vgx_A Chaperone SYCD; alterna 99.2 1.3E-10 4.4E-15 93.0 13.0 102 92-195 17-118 (148)
63 2xcb_A PCRH, regulatory protei 99.2 1.4E-10 4.8E-15 91.2 13.0 104 92-197 14-117 (142)
64 2vq2_A PILW, putative fimbrial 99.2 2.4E-10 8.3E-15 93.7 14.6 132 92-225 38-186 (225)
65 3sz7_A HSC70 cochaperone (SGT) 99.2 1.7E-10 6E-15 92.4 13.5 112 93-206 8-122 (164)
66 3u4t_A TPR repeat-containing p 99.2 2.8E-10 9.4E-15 96.9 15.4 200 12-211 40-269 (272)
67 1elw_A TPR1-domain of HOP; HOP 99.2 7.4E-10 2.5E-14 81.5 15.9 111 95-207 3-116 (118)
68 3edt_B KLC 2, kinesin light ch 99.2 1.7E-10 5.8E-15 97.6 13.6 159 24-195 24-198 (283)
69 2r5s_A Uncharacterized protein 99.2 1.5E-10 5.2E-15 94.2 12.8 149 46-215 9-162 (176)
70 3upv_A Heat shock protein STI1 99.2 2.7E-10 9.3E-15 87.0 13.4 101 94-196 2-102 (126)
71 3nf1_A KLC 1, kinesin light ch 99.2 1.1E-10 3.6E-15 100.7 11.9 171 12-195 30-224 (311)
72 1ouv_A Conserved hypothetical 99.2 1.2E-09 4.1E-14 94.0 18.5 205 7-216 4-241 (273)
73 3q49_B STIP1 homology and U bo 99.2 5.1E-10 1.7E-14 85.9 13.5 104 93-198 6-109 (137)
74 1elr_A TPR2A-domain of HOP; HO 99.2 3.6E-10 1.2E-14 84.8 12.2 117 94-212 2-127 (131)
75 2dba_A Smooth muscle cell asso 99.2 1.1E-09 3.8E-14 84.3 15.0 115 91-207 23-143 (148)
76 1hxi_A PEX5, peroxisome target 99.2 4.2E-10 1.4E-14 86.9 12.3 100 97-198 18-117 (121)
77 3qou_A Protein YBBN; thioredox 99.2 8.2E-10 2.8E-14 97.5 15.7 123 91-215 146-273 (287)
78 2yhc_A BAMD, UPF0169 lipoprote 99.2 8.1E-10 2.8E-14 93.5 14.8 155 46-216 7-203 (225)
79 2vgx_A Chaperone SYCD; alterna 99.1 1.2E-10 4.1E-15 93.2 8.3 109 116-226 7-128 (148)
80 2xev_A YBGF; tetratricopeptide 99.1 1.4E-09 4.9E-14 82.5 13.9 113 97-211 3-124 (129)
81 1a17_A Serine/threonine protei 99.1 7.3E-10 2.5E-14 87.1 12.5 118 94-213 11-133 (166)
82 2pzi_A Probable serine/threoni 99.1 2.4E-10 8.3E-15 113.1 11.6 148 91-241 428-600 (681)
83 2kck_A TPR repeat; tetratricop 99.1 4.6E-10 1.6E-14 82.1 9.8 103 93-197 3-108 (112)
84 3sf4_A G-protein-signaling mod 99.1 4.8E-10 1.6E-14 100.2 11.9 122 94-217 185-327 (406)
85 2xcb_A PCRH, regulatory protei 99.1 3.4E-10 1.2E-14 89.0 9.4 108 117-226 5-125 (142)
86 1p5q_A FKBP52, FK506-binding p 99.1 4.9E-10 1.7E-14 101.5 11.2 121 93-215 144-282 (336)
87 2vsy_A XCC0866; transferase, g 99.1 1.3E-09 4.5E-14 104.5 14.8 124 91-216 18-147 (568)
88 3ro2_A PINS homolog, G-protein 99.1 3.7E-10 1.3E-14 97.3 9.7 199 16-216 13-282 (338)
89 4a1s_A PINS, partner of inscut 99.1 3.6E-10 1.2E-14 102.1 9.7 48 16-63 56-106 (411)
90 3ulq_A Response regulator aspa 99.1 4.9E-09 1.7E-13 94.9 17.2 184 15-212 110-318 (383)
91 2hr2_A Hypothetical protein; a 99.1 1E-09 3.5E-14 90.4 11.2 102 97-198 12-134 (159)
92 3sf4_A G-protein-signaling mod 99.1 9E-10 3.1E-14 98.4 11.8 202 14-217 15-287 (406)
93 3k9i_A BH0479 protein; putativ 99.1 6.8E-10 2.3E-14 84.4 9.1 105 108-214 2-112 (117)
94 1xnf_A Lipoprotein NLPI; TPR, 99.1 1.2E-09 4.3E-14 92.6 11.8 121 93-216 40-163 (275)
95 3ro2_A PINS homolog, G-protein 99.1 4.6E-10 1.6E-14 96.7 9.2 198 16-215 51-321 (338)
96 3qou_A Protein YBBN; thioredox 99.1 9.7E-10 3.3E-14 97.0 11.4 123 93-217 114-239 (287)
97 1qqe_A Vesicular transport pro 99.1 3E-09 1E-13 93.7 14.6 123 95-217 76-219 (292)
98 2fbn_A 70 kDa peptidylprolyl i 99.0 3.1E-09 1.1E-13 87.7 13.4 121 93-215 35-174 (198)
99 3edt_B KLC 2, kinesin light ch 99.0 3.5E-09 1.2E-13 89.4 14.0 167 16-195 51-281 (283)
100 4gco_A Protein STI-1; structur 99.0 1E-09 3.5E-14 85.4 9.8 103 123-227 6-121 (126)
101 4a1s_A PINS, partner of inscut 99.0 3.4E-10 1.2E-14 102.3 8.1 200 16-217 94-363 (411)
102 2c2l_A CHIP, carboxy terminus 99.0 9.9E-10 3.4E-14 96.8 10.8 104 93-198 1-104 (281)
103 2vsy_A XCC0866; transferase, g 99.0 4.5E-09 1.5E-13 100.8 16.1 155 21-197 2-159 (568)
104 2e2e_A Formate-dependent nitri 99.0 3.2E-09 1.1E-13 85.5 12.8 105 92-198 40-147 (177)
105 1qqe_A Vesicular transport pro 99.0 4.9E-09 1.7E-13 92.3 15.0 164 20-198 49-231 (292)
106 4gcn_A Protein STI-1; structur 99.0 2E-09 6.7E-14 83.7 11.1 106 97-204 9-123 (127)
107 2fo7_A Synthetic consensus TPR 99.0 5.1E-09 1.7E-13 78.1 12.4 103 93-197 32-134 (136)
108 4g1t_A Interferon-induced prot 99.0 2.4E-08 8.1E-13 91.9 18.6 155 49-213 57-225 (472)
109 1hh8_A P67PHOX, NCF-2, neutrop 99.0 7.2E-09 2.5E-13 85.3 12.8 115 98-217 8-141 (213)
110 3ulq_A Response regulator aspa 99.0 4.5E-09 1.5E-13 95.1 12.3 156 49-217 109-284 (383)
111 2e2e_A Formate-dependent nitri 99.0 1.7E-09 5.8E-14 87.2 8.5 119 106-226 20-154 (177)
112 2ond_A Cleavage stimulation fa 98.9 1.8E-08 6.3E-13 89.0 15.4 145 71-216 99-260 (308)
113 3rkv_A Putative peptidylprolyl 98.9 9.4E-09 3.2E-13 82.0 12.2 115 95-211 10-146 (162)
114 3gw4_A Uncharacterized protein 98.9 1.1E-08 3.9E-13 83.0 12.9 162 18-195 2-176 (203)
115 4g1t_A Interferon-induced prot 98.9 2.1E-08 7.3E-13 92.3 16.3 192 18-210 61-294 (472)
116 3nf1_A KLC 1, kinesin light ch 98.9 5.7E-09 1.9E-13 89.7 11.3 163 42-217 26-215 (311)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.7E-08 5.7E-13 83.1 13.2 128 47-198 10-153 (213)
118 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 8E-09 2.7E-13 97.4 12.5 120 93-214 265-402 (457)
119 3q15_A PSP28, response regulat 98.9 5.2E-08 1.8E-12 88.2 16.7 166 16-195 109-290 (378)
120 2r5s_A Uncharacterized protein 98.9 3.9E-09 1.3E-13 85.7 8.0 122 93-217 3-128 (176)
121 3q15_A PSP28, response regulat 98.9 1.2E-08 4.2E-13 92.3 11.8 157 48-217 106-281 (378)
122 4gcn_A Protein STI-1; structur 98.8 1.2E-08 4.1E-13 79.2 9.1 85 133-217 6-103 (127)
123 1ouv_A Conserved hypothetical 98.8 4.5E-08 1.5E-12 84.0 13.5 115 93-209 35-158 (273)
124 1ihg_A Cyclophilin 40; ppiase 98.8 2.7E-08 9.1E-13 91.6 12.3 116 96-213 223-357 (370)
125 3qww_A SET and MYND domain-con 98.8 2.4E-09 8.3E-14 101.2 5.4 86 145-230 311-430 (433)
126 3n71_A Histone lysine methyltr 98.8 1.4E-08 4.7E-13 97.5 10.6 106 105-212 318-450 (490)
127 1wao_1 Serine/threonine protei 98.8 7.3E-09 2.5E-13 98.5 8.6 114 100-215 10-128 (477)
128 2if4_A ATFKBP42; FKBP-like, al 98.8 1.3E-08 4.3E-13 92.3 9.6 117 93-211 176-312 (338)
129 3n71_A Histone lysine methyltr 98.8 1.2E-08 4.3E-13 97.8 9.9 86 143-228 320-439 (490)
130 3sz7_A HSC70 cochaperone (SGT) 98.8 6.5E-08 2.2E-12 77.2 12.5 95 145-239 24-134 (164)
131 3u3w_A Transcriptional activat 98.8 1.9E-07 6.3E-12 81.8 16.3 166 15-195 82-266 (293)
132 2ifu_A Gamma-SNAP; membrane fu 98.8 6.9E-08 2.3E-12 85.5 13.0 153 50-217 43-215 (307)
133 3ro3_A PINS homolog, G-protein 98.8 3E-08 1E-12 76.3 9.3 118 96-215 9-147 (164)
134 3gw4_A Uncharacterized protein 98.8 2.9E-08 9.8E-13 80.5 9.2 121 94-216 24-166 (203)
135 2qfc_A PLCR protein; TPR, HTH, 98.8 1.6E-07 5.6E-12 82.1 14.7 119 96-216 115-255 (293)
136 2qfc_A PLCR protein; TPR, HTH, 98.7 2.4E-07 8.1E-12 81.1 15.4 167 14-195 81-266 (293)
137 3upv_A Heat shock protein STI1 98.7 5.9E-08 2E-12 73.7 10.0 74 144-217 16-92 (126)
138 2xev_A YBGF; tetratricopeptide 98.7 6.5E-08 2.2E-12 73.1 9.9 85 145-229 15-118 (129)
139 2vyi_A SGTA protein; chaperone 98.7 9.3E-07 3.2E-11 65.5 16.0 120 43-183 12-131 (131)
140 2ond_A Cleavage stimulation fa 98.7 1.8E-07 6.2E-12 82.6 13.8 124 92-217 95-223 (308)
141 2kat_A Uncharacterized protein 98.7 1.9E-07 6.6E-12 70.0 11.8 97 114-212 3-104 (115)
142 1a17_A Serine/threonine protei 98.7 2.6E-07 9E-12 72.1 13.0 128 46-194 16-145 (166)
143 3qww_A SET and MYND domain-con 98.7 2.8E-08 9.5E-13 94.0 8.5 89 108-200 310-424 (433)
144 2xm6_A Protein corresponding t 98.7 1.9E-06 6.3E-11 80.8 20.2 199 6-209 36-267 (490)
145 3k9i_A BH0479 protein; putativ 98.7 1E-08 3.4E-13 77.8 3.5 84 145-228 3-102 (117)
146 1elw_A TPR1-domain of HOP; HOP 98.7 2E-07 7E-12 68.1 10.5 82 145-226 17-111 (118)
147 2xm6_A Protein corresponding t 98.6 1.4E-06 4.7E-11 81.7 18.3 120 93-216 288-422 (490)
148 3q49_B STIP1 homology and U bo 98.6 2.3E-07 7.7E-12 70.8 10.5 90 126-217 5-97 (137)
149 2ifu_A Gamma-SNAP; membrane fu 98.6 2.6E-07 8.8E-12 81.8 12.3 162 19-197 47-225 (307)
150 2l6j_A TPR repeat-containing p 98.6 3.9E-07 1.3E-11 66.7 11.4 74 144-217 16-98 (111)
151 3qwp_A SET and MYND domain-con 98.6 4E-08 1.4E-12 92.6 7.2 85 145-229 300-418 (429)
152 1hxi_A PEX5, peroxisome target 98.6 7.2E-08 2.5E-12 74.1 7.3 72 145-216 30-104 (121)
153 3u3w_A Transcriptional activat 98.6 8.7E-07 3E-11 77.4 15.2 151 67-217 42-216 (293)
154 1na0_A Designed protein CTPR3; 98.6 2.8E-06 9.6E-11 62.3 15.8 116 44-180 10-125 (125)
155 2fbn_A 70 kDa peptidylprolyl i 98.6 2.7E-07 9.3E-12 75.8 11.2 96 96-193 88-184 (198)
156 2dba_A Smooth muscle cell asso 98.6 2.2E-07 7.5E-12 71.2 9.9 99 126-226 24-138 (148)
157 1na3_A Designed protein CTPR2; 98.6 5.1E-07 1.7E-11 63.8 11.0 66 146-211 23-91 (91)
158 2kck_A TPR repeat; tetratricop 98.6 1.4E-07 4.7E-12 68.5 8.1 90 126-217 2-97 (112)
159 3qwp_A SET and MYND domain-con 98.6 4.5E-07 1.5E-11 85.4 13.3 105 101-209 292-425 (429)
160 2l6j_A TPR repeat-containing p 98.6 2.2E-07 7.4E-12 68.1 8.6 93 95-189 3-101 (111)
161 1na3_A Designed protein CTPR2; 98.6 7.6E-07 2.6E-11 62.9 10.7 86 93-180 6-91 (91)
162 2lni_A Stress-induced-phosphop 98.6 9.6E-07 3.3E-11 66.1 11.8 119 42-181 15-133 (133)
163 1hz4_A MALT regulatory protein 98.5 3E-06 1E-10 75.7 16.8 200 16-217 22-273 (373)
164 1elr_A TPR2A-domain of HOP; HO 98.5 8.5E-07 2.9E-11 65.9 10.5 73 145-217 17-99 (131)
165 3rjv_A Putative SEL1 repeat pr 98.5 1.1E-05 3.6E-10 67.6 18.3 112 93-205 82-208 (212)
166 1hz4_A MALT regulatory protein 98.5 3E-06 1E-10 75.7 15.7 200 16-217 61-313 (373)
167 2ooe_A Cleavage stimulation fa 98.5 5E-06 1.7E-10 78.7 17.8 96 98-194 358-453 (530)
168 3rkv_A Putative peptidylprolyl 98.5 3.6E-07 1.2E-11 72.6 8.4 81 145-225 24-136 (162)
169 3rjv_A Putative SEL1 repeat pr 98.5 1E-06 3.5E-11 73.9 11.6 115 94-209 48-174 (212)
170 1p5q_A FKBP52, FK506-binding p 98.5 1.5E-06 5.1E-11 78.4 12.9 98 96-195 196-294 (336)
171 2ooe_A Cleavage stimulation fa 98.5 1.4E-06 4.9E-11 82.4 13.1 122 92-217 317-445 (530)
172 1zu2_A Mitochondrial import re 98.5 3.3E-07 1.1E-11 75.2 7.5 92 107-198 13-123 (158)
173 3ro3_A PINS homolog, G-protein 98.5 2.2E-06 7.6E-11 65.5 11.8 137 44-195 10-158 (164)
174 3mv2_B Coatomer subunit epsilo 98.5 1.7E-06 5.8E-11 78.4 12.7 118 94-216 98-230 (310)
175 3ma5_A Tetratricopeptide repea 98.5 1.8E-06 6.1E-11 63.7 10.7 86 126-213 3-93 (100)
176 1wao_1 Serine/threonine protei 98.5 2.8E-07 9.6E-12 87.5 7.8 97 92-190 36-134 (477)
177 4f3v_A ESX-1 secretion system 98.5 4.5E-07 1.5E-11 81.1 8.6 194 12-217 10-228 (282)
178 2c2l_A CHIP, carboxy terminus 98.4 1.1E-06 3.6E-11 77.2 9.5 73 145-217 17-92 (281)
179 3e4b_A ALGK; tetratricopeptide 98.4 2.5E-06 8.6E-11 80.0 12.6 115 93-211 173-296 (452)
180 2hr2_A Hypothetical protein; a 98.4 8.2E-07 2.8E-11 73.0 8.0 73 145-217 24-122 (159)
181 2kat_A Uncharacterized protein 98.4 4.9E-07 1.7E-11 67.7 5.9 90 149-238 2-104 (115)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 9E-08 3.1E-12 90.2 2.0 116 109-226 247-390 (457)
183 4f3v_A ESX-1 secretion system 98.3 7.1E-07 2.4E-11 79.8 5.8 102 92-198 132-240 (282)
184 2kc7_A BFR218_protein; tetratr 98.2 6.5E-06 2.2E-10 59.5 8.9 50 146-195 14-64 (99)
185 3e4b_A ALGK; tetratricopeptide 98.2 6.9E-05 2.4E-09 70.1 18.2 158 45-209 178-366 (452)
186 4b4t_Q 26S proteasome regulato 98.2 3.7E-05 1.3E-09 69.6 15.6 188 6-195 1-245 (434)
187 3dra_A Protein farnesyltransfe 98.2 0.00023 7.8E-09 64.0 20.4 150 92-243 99-291 (306)
188 2kc7_A BFR218_protein; tetratr 98.2 3.6E-06 1.2E-10 60.9 6.7 87 100-196 4-91 (99)
189 1ihg_A Cyclophilin 40; ppiase 98.1 1.4E-05 4.8E-10 73.3 10.8 135 48-188 228-363 (370)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 5E-06 1.7E-10 75.0 6.8 100 97-198 231-331 (338)
191 3ma5_A Tetratricopeptide repea 98.0 4E-05 1.4E-09 56.3 10.2 70 92-163 3-72 (100)
192 1klx_A Cysteine rich protein B 98.0 5.5E-05 1.9E-09 59.3 10.5 101 102-204 31-136 (138)
193 1zu2_A Mitochondrial import re 97.9 1E-05 3.4E-10 66.4 5.1 67 146-212 16-95 (158)
194 1klx_A Cysteine rich protein B 97.9 8.7E-05 3E-09 58.1 9.8 91 111-209 10-105 (138)
195 3q7a_A Farnesyltransferase alp 97.8 0.0029 9.8E-08 58.0 20.5 118 91-213 118-258 (349)
196 4b4t_Q 26S proteasome regulato 97.8 0.00015 5.1E-09 65.6 11.3 157 49-216 10-194 (434)
197 1pc2_A Mitochondria fission pr 97.8 8E-05 2.7E-09 60.5 8.0 87 112-198 14-103 (152)
198 1dce_A Protein (RAB geranylger 97.7 0.00054 1.8E-08 66.5 14.8 124 91-215 102-244 (567)
199 1xi4_A Clathrin heavy chain; a 97.7 0.001 3.4E-08 70.8 16.8 45 165-209 1279-1326(1630)
200 3bee_A Putative YFRE protein; 97.7 0.00028 9.7E-09 52.0 9.0 48 148-195 25-72 (93)
201 1b89_A Protein (clathrin heavy 97.6 7.5E-05 2.6E-09 70.7 6.7 178 19-209 72-253 (449)
202 3bee_A Putative YFRE protein; 97.6 0.00043 1.5E-08 51.0 9.3 72 92-165 2-76 (93)
203 1dce_A Protein (RAB geranylger 97.5 0.0037 1.3E-07 60.5 17.6 122 92-213 59-194 (567)
204 1xi4_A Clathrin heavy chain; a 97.5 0.0015 5.1E-08 69.5 15.4 24 12-35 989-1012(1630)
205 3dra_A Protein farnesyltransfe 97.5 0.0019 6.5E-08 57.9 13.8 121 92-212 63-195 (306)
206 1b89_A Protein (clathrin heavy 97.4 0.00024 8.4E-09 67.2 6.7 167 20-213 15-193 (449)
207 4g26_A Pentatricopeptide repea 97.3 0.023 7.9E-07 54.1 20.1 107 94-203 103-216 (501)
208 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0017 5.8E-08 48.2 9.4 63 146-208 19-91 (104)
209 3q7a_A Farnesyltransferase alp 97.3 0.0049 1.7E-07 56.5 14.2 117 93-214 51-176 (349)
210 4g26_A Pentatricopeptide repea 97.2 0.01 3.5E-07 56.6 16.2 104 110-217 84-195 (501)
211 3ly7_A Transcriptional activat 97.1 0.0063 2.2E-07 56.2 12.6 125 93-217 191-330 (372)
212 1nzn_A CGI-135 protein, fissio 97.1 0.0012 4.3E-08 51.8 6.8 91 108-198 13-106 (126)
213 3u64_A Protein TP_0956; tetrat 97.0 0.0045 1.5E-07 55.4 10.4 113 92-204 148-283 (301)
214 3dss_A Geranylgeranyl transfer 96.9 0.012 4E-07 53.5 13.1 123 91-213 59-195 (331)
215 3dss_A Geranylgeranyl transfer 96.9 0.025 8.7E-07 51.2 14.5 88 91-183 103-196 (331)
216 3ly7_A Transcriptional activat 96.7 0.0084 2.9E-07 55.3 10.0 103 93-198 230-342 (372)
217 2v5f_A Prolyl 4-hydroxylase su 96.7 0.031 1.1E-06 41.1 11.4 78 95-176 4-90 (104)
218 1pc2_A Mitochondria fission pr 96.6 0.0049 1.7E-07 49.9 7.1 83 146-228 12-112 (152)
219 3spa_A Mtrpol, DNA-directed RN 96.2 0.049 1.7E-06 56.4 13.3 99 99-201 130-238 (1134)
220 4e6h_A MRNA 3'-END-processing 96.2 0.079 2.7E-06 52.5 14.2 33 93-125 375-407 (679)
221 3o48_A Mitochondria fission 1 96.2 0.027 9.4E-07 44.5 8.7 83 115-198 26-110 (134)
222 4e6h_A MRNA 3'-END-processing 96.0 0.072 2.5E-06 52.8 13.0 129 97-226 435-580 (679)
223 1y8m_A FIS1; mitochondria, unk 96.0 0.056 1.9E-06 43.2 9.8 83 115-198 25-109 (144)
224 4h7y_A Dual specificity protei 95.7 0.3 1E-05 39.5 12.9 121 93-213 10-143 (161)
225 3ffl_A Anaphase-promoting comp 94.7 0.41 1.4E-05 39.1 11.3 113 94-206 18-164 (167)
226 3txn_A 26S proteasome regulato 94.5 1.8 6.2E-05 39.9 16.6 168 46-215 22-238 (394)
227 2uy1_A Cleavage stimulation fa 93.4 1.4 4.7E-05 41.5 13.9 121 92-214 209-371 (493)
228 1nzn_A CGI-135 protein, fissio 92.9 0.76 2.6E-05 35.7 9.3 83 146-228 15-115 (126)
229 3ffl_A Anaphase-promoting comp 92.6 0.16 5.4E-06 41.6 5.2 76 142-217 30-142 (167)
230 4b4t_P 26S proteasome regulato 91.9 7.8 0.00027 35.9 18.3 236 9-246 17-324 (445)
231 3u64_A Protein TP_0956; tetrat 91.1 0.4 1.4E-05 42.8 6.5 91 125-215 147-258 (301)
232 2uy1_A Cleavage stimulation fa 91.1 1.9 6.6E-05 40.5 11.7 92 100-193 290-381 (493)
233 3mkq_A Coatomer beta'-subunit; 90.6 3.5 0.00012 39.8 13.3 105 13-124 604-709 (814)
234 4gns_B Protein CSD3, chitin bi 89.5 1.1 3.8E-05 44.9 8.8 123 21-157 261-396 (754)
235 3spa_A Mtrpol, DNA-directed RN 88.6 2.3 8E-05 44.2 10.5 71 144-214 139-217 (1134)
236 4gns_B Protein CSD3, chitin bi 88.5 2.1 7.1E-05 42.9 9.9 108 109-217 261-391 (754)
237 3mkq_A Coatomer beta'-subunit; 87.9 6.9 0.00024 37.7 13.2 137 43-189 599-746 (814)
238 2p58_C Putative type III secre 85.1 5.3 0.00018 30.0 8.1 35 176-212 50-84 (116)
239 4b4t_R RPN7, 26S proteasome re 84.2 6.1 0.00021 36.4 10.2 100 95-195 130-237 (429)
240 2ff4_A Probable regulatory pro 83.4 20 0.00068 32.3 13.2 98 97-194 116-233 (388)
241 4fhn_B Nucleoporin NUP120; pro 81.7 10 0.00035 39.3 11.7 121 93-213 839-987 (1139)
242 2uwj_G Type III export protein 81.5 5.1 0.00018 30.1 6.8 17 196-212 67-83 (115)
243 1y8m_A FIS1; mitochondria, unk 81.5 1.8 6.2E-05 34.4 4.6 37 94-130 75-111 (144)
244 3o48_A Mitochondria fission 1 81.0 2 6.8E-05 33.7 4.6 37 95-131 77-113 (134)
245 1zbp_A Hypothetical protein VP 80.2 4.3 0.00015 35.6 7.0 96 91-195 26-129 (273)
246 2p58_C Putative type III secre 79.6 17 0.00058 27.3 9.0 93 99-199 10-103 (116)
247 3bu8_A Telomeric repeat-bindin 78.2 30 0.001 29.3 11.9 89 148-241 88-188 (235)
248 3mkq_B Coatomer subunit alpha; 77.7 18 0.00061 29.5 9.7 83 95-192 33-115 (177)
249 4b4t_S RPN3, 26S proteasome re 76.5 6.3 0.00021 37.7 7.5 26 98-123 233-258 (523)
250 2uwj_G Type III export protein 75.8 16 0.00056 27.3 8.0 92 100-199 10-102 (115)
251 1ya0_A SMG-7 transcript varian 75.3 14 0.00047 35.0 9.6 65 146-210 166-233 (497)
252 3txn_A 26S proteasome regulato 75.1 50 0.0017 30.2 13.5 127 49-189 105-243 (394)
253 1zbp_A Hypothetical protein VP 74.0 10 0.00035 33.1 7.7 88 144-231 9-109 (273)
254 1wy6_A Hypothetical protein ST 73.2 12 0.0004 30.0 7.0 57 144-200 103-160 (172)
255 3esl_A Checkpoint serine/threo 72.9 14 0.00048 30.8 7.9 60 136-195 81-144 (202)
256 3ph0_C ASCG; type III secretio 69.7 14 0.00048 24.5 5.7 53 133-186 8-60 (61)
257 3mkq_B Coatomer subunit alpha; 69.2 26 0.0009 28.5 8.7 17 105-121 14-30 (177)
258 4h7y_A Dual specificity protei 65.5 18 0.00063 29.0 6.8 69 108-182 72-143 (161)
259 3t5x_A PCI domain-containing p 64.5 10 0.00034 31.4 5.4 47 168-214 16-70 (203)
260 4b4t_S RPN3, 26S proteasome re 64.4 51 0.0018 31.4 10.8 68 146-215 245-329 (523)
261 3t5v_B Nuclear mRNA export pro 63.8 18 0.00061 33.9 7.5 90 95-186 175-285 (455)
262 2ff4_A Probable regulatory pro 57.0 44 0.0015 30.0 8.8 60 97-160 172-233 (388)
263 4a1g_A Mitotic checkpoint seri 56.2 44 0.0015 26.5 7.5 57 136-195 72-130 (152)
264 1ya0_A SMG-7 transcript varian 56.2 13 0.00046 35.1 5.2 73 168-240 154-237 (497)
265 4fhn_B Nucleoporin NUP120; pro 54.9 1.1E+02 0.0036 31.7 12.2 113 99-217 815-958 (1139)
266 3lpz_A GET4 (YOR164C homolog); 51.2 1.3E+02 0.0046 26.8 11.9 50 164-215 134-185 (336)
267 2wvi_A Mitotic checkpoint seri 46.5 73 0.0025 25.5 7.5 57 136-195 67-125 (164)
268 1qsa_A Protein (soluble lytic 44.9 2.2E+02 0.0075 27.4 15.6 65 146-213 299-363 (618)
269 4b4t_P 26S proteasome regulato 44.6 67 0.0023 29.5 8.0 96 94-191 175-283 (445)
270 2w2u_A Hypothetical P60 katani 44.4 24 0.00082 24.9 3.8 28 168-195 21-48 (83)
271 4b4t_R RPN7, 26S proteasome re 44.0 1.7E+02 0.0058 26.4 10.6 69 93-163 165-239 (429)
272 2ynq_A ESSB; membrane protein, 43.8 1.2E+02 0.0042 24.2 9.1 92 3-122 3-99 (161)
273 2v6y_A AAA family ATPase, P60 41.7 28 0.00096 24.5 3.8 27 168-194 13-39 (83)
274 3bqo_A Telomeric repeat-bindin 37.3 67 0.0023 26.8 5.9 61 174-243 125-197 (211)
275 4a5x_A MITD1, MIT domain-conta 37.2 36 0.0012 24.1 3.8 28 168-195 18-45 (86)
276 1qsa_A Protein (soluble lytic 36.6 1.1E+02 0.0038 29.5 8.4 117 99-216 217-338 (618)
277 4aez_C MAD3, mitotic spindle c 34.9 1.1E+02 0.0037 25.7 7.0 57 136-195 121-179 (223)
278 3hkz_Y DNA-directed RNA polyme 33.4 53 0.0018 23.7 4.1 39 125-163 38-76 (104)
279 2crb_A Nuclear receptor bindin 32.6 42 0.0014 24.5 3.5 26 169-194 18-43 (97)
280 1wy6_A Hypothetical protein ST 32.5 1.8E+02 0.006 23.2 7.4 63 95-161 90-154 (172)
281 3t5v_B Nuclear mRNA export pro 31.4 1.1E+02 0.0037 28.5 7.1 97 146-242 190-323 (455)
282 2ijq_A Hypothetical protein; s 28.7 2.2E+02 0.0075 22.6 9.0 24 171-194 80-103 (161)
283 1wfd_A Hypothetical protein 15 28.5 60 0.002 23.2 3.8 28 168-195 17-44 (93)
284 2v6x_A Vacuolar protein sortin 27.2 67 0.0023 22.3 3.8 28 168-195 15-42 (85)
285 2ijq_A Hypothetical protein; s 27.0 2.3E+02 0.008 22.4 8.5 31 96-126 32-62 (161)
286 4gq2_M Nucleoporin NUP120; bet 26.4 60 0.002 33.0 4.7 41 154-194 828-868 (950)
287 2cpt_A SKD1 protein, vacuolar 24.0 71 0.0024 24.0 3.6 26 169-194 21-46 (117)
288 1wcr_A PTS system, N, N'-diace 23.9 79 0.0027 23.3 3.8 29 167-195 19-47 (103)
289 2e2a_A Protein (enzyme IIA); h 23.6 80 0.0027 23.3 3.8 29 167-195 21-49 (105)
290 4ayb_Q DNA-directed RNA polyme 22.5 1.3E+02 0.0044 21.7 4.5 34 129-162 42-75 (104)
291 2d2s_A Exocyst complex compone 22.3 3.4E+02 0.012 22.6 9.4 95 95-194 17-119 (235)
292 3k1s_A PTS system, cellobiose- 20.4 1E+02 0.0035 22.9 3.8 28 168-195 24-51 (109)
No 1
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=100.00 E-value=5.4e-47 Score=345.27 Aligned_cols=229 Identities=17% Similarity=0.250 Sum_probs=195.1
Q ss_pred cCCcchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCC
Q psy3174 6 DNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPS 85 (265)
Q Consensus 6 ~~~~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~ 85 (265)
..|+|+||+|||+||+|+|++||++++++++.++ .++++|+||||||+|++..+.+ ++|.+++|+++|+|+..+.
T Consensus 11 ~~~~~~lf~ikn~fy~G~yq~~i~e~~~~~~~~~---~~~~~~~~Rs~iAlg~~~~~~~--~~~~~~a~~~la~~~~~~a 85 (310)
T 3mv2_B 11 SQDPMDYFNIKQNYYTGNFVQCLQEIEKFSKVTD---NTLLFYKAKTLLALGQYQSQDP--TSKLGKVLDLYVQFLDTKN 85 (310)
T ss_dssp ----CCTHHHHHHHTTTCHHHHTHHHHTSSCCCC---HHHHHHHHHHHHHTTCCCCCCS--SSTTHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHHhhHHHHHHHHHHhcCccch---HHHHHHHHHHHHHcCCCccCCC--CCHHHHHHHHHHHHhcccH
Confidence 4689999999999999999999999877665444 4689999999999999986554 6777889999999997542
Q ss_pred cCc---------c---------------cc--------------c--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 86 KNG---------S---------------SN--------------F--GTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 86 ~~e---------~---------------~~--------------~--~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
... . ++ . ++++|++++.|++++++||+|+|++++++|+++
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 110 0 11 1 289999999999999999999999999999999
Q ss_pred CC------CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--
Q psy3174 126 DE------DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-- 194 (265)
Q Consensus 126 ~~------d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~-- 194 (265)
+| |+++++|+++|+++.+|++++++|+++|+|+.+++|+ +..++| |++++|+|+||+..++.+++
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhc
Confidence 98 7999999999999999999999999999999999996 445666 89999999999999987665
Q ss_pred ----------C-CHHHHHHHHHHHHHcCCCCccC--------CCChhhhcHHHHHHHHHHHHhhcccc
Q psy3174 195 ----------D-SEDTLINNMVTAGRLGKGNEMS--------VSPPFLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 195 ----------~-~pdtl~nl~~~~~~~Gk~~ea~--------p~hp~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
. ||++++|+|+++.++|+..+.+ |+||+++++.++++.||+++.+|+++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~~~ky~~~ 309 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKYDTS 309 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTCC--
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 8999999999999999955443 99999999999999999999999865
No 2
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=100.00 E-value=2.7e-41 Score=302.87 Aligned_cols=234 Identities=43% Similarity=0.673 Sum_probs=217.4
Q ss_pred chhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc---CChHHHHHHHHHHHhcCCCc
Q psy3174 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK---LPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 10 delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei---~~~~l~~~~~~A~~l~~~~~ 86 (265)
||||+|||+||+|+|++||++++++...+|++..+++++++|+|+++|+++.++.++ ++|.+.++..++.++...++
T Consensus 1 d~l~~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 1 DELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence 799999999999999999999988888999999999999999999999999999988 67789999999999887664
Q ss_pred Ccc-------------------------------cc---------cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 87 NGS-------------------------------SN---------FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 87 ~e~-------------------------------~~---------~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
.+. ++ .|+++++...++++|+.+||+++|.+.|+++++++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 321 11 17899999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHH
Q psy3174 127 EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINN 203 (265)
Q Consensus 127 ~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl 203 (265)
||++..+++.+|+++..+.|++++|+.+|+++.+.+|+++.+++++|.+++++|+|++|+..++++++. +|+++.|+
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999998899999999999999999999999999999999999999999999999998 88899999
Q ss_pred HHHHHHcCCCCccC-----------CCChhhhcHHHHHHHHHHHHhhcccc
Q psy3174 204 MVTAGRLGKGNEMS-----------VSPPFLFRSDETTATLDACGLQSNSE 243 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~-----------p~hp~~~~~~~~~~~FD~~~~~~~~~ 243 (265)
++++..+|+..++. |+||++.++.+++..||+++.+|+|+
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~~~~~~~ 291 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYAPS 291 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999986532 99999999999999999999999875
No 3
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.60 E-value=4.8e-14 Score=122.88 Aligned_cols=232 Identities=13% Similarity=0.031 Sum_probs=164.0
Q ss_pred cchhH-HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHh
Q psy3174 9 VDELF-DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYL 81 (265)
Q Consensus 9 ~delf-~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l 81 (265)
++-++ ..+..|..|+|.+|+..++++...+|.. ........+++..+|+++.++..+ .+....++..++.++
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH-ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 44444 4478889999999999876665544443 223444578889999998666544 232344455555555
Q ss_pred cCCC-cCc-c--------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHH
Q psy3174 82 SIPS-KNG-S--------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEA 151 (265)
Q Consensus 82 ~~~~-~~e-~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA 151 (265)
...+ ..+ + ...|.+.+....++.++..+|+++.|.+.++++++..|++.......+.+.... |++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT--NNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT--TCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--hhHHHH
Confidence 4444 322 1 334778888888888899999999999999988888887765555555554444 678889
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHcCCCCccC--
Q psy3174 152 FYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------------SEDTLINNMVTAGRLGKGNEMS-- 217 (265)
Q Consensus 152 ~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------------~pdtl~nl~~~~~~~Gk~~ea~-- 217 (265)
...|+++....|.++.+++.+|.++..+|++++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999888888888888888888899999999998888888864 3457888888888888877654
Q ss_pred --------CCChhhhcHH----HHHHHHHHHHhhcccc
Q psy3174 218 --------VSPPFLFRSD----ETTATLDACGLQSNSE 243 (265)
Q Consensus 218 --------p~hp~~~~~~----~~~~~FD~~~~~~~~~ 243 (265)
|+++.+.... .....|++...-|...
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7776554432 2455566666666544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.59 E-value=1.3e-13 Score=124.76 Aligned_cols=122 Identities=15% Similarity=0.013 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++......++.++..+|++++|.+.|+++++.+|+++.+....+.+.... |++++|...|+++....|.++..++.+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK--GSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 556666666666666666666666666666666666554433333333323 556666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|.++..+|++++|...++++++. ++.+..+++.++..+|+..++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666666665 344556666666666666554
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=9e-14 Score=117.80 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=144.0
Q ss_pred hhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc
Q psy3174 11 ELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 11 elf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
-++.. ...+-.|+|++|+..+++....+|+. .+......+++..+|+++.++.. ++....
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~--------~~~al~---------- 67 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQD-PEALYWLARTQLKLGLVNPALEN--------GKTLVA---------- 67 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHH----------
Confidence 34444 45667899999999987666666654 23455667889999999876662 221111
Q ss_pred cccCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTM-----------YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~-----------~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
..|++.+....++.++..+ |++++|.+.|+++++.+|+++.+....+++.... |++++|...|+++
T Consensus 68 -~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~--g~~~~A~~~~~~a 144 (217)
T 2pl2_A 68 -RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL--GERDKAEASLKQA 144 (217)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 2367889999999999999 9999999999999999999987766666665545 7899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.... +++.+++.+|.++..+|++++|...++++++. +++++.+++.++..+|+.+++.
T Consensus 145 l~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 145 LALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred Hhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 9998 89999999999999999999999999999998 6778999999999999988765
No 6
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.58 E-value=7.7e-14 Score=121.57 Aligned_cols=211 Identities=13% Similarity=-0.021 Sum_probs=163.9
Q ss_pred HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHccc-ChhHHhhhc------CChHHHHHHHHHHHhcCCCc
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQK-KYKVVLEEK------LPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg-~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~ 86 (265)
-....+..|+|++++..++++....|+. ......+.+++..+| +++.++.-+ .+....++..++..+...++
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSN-PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTS-THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 4577788999999999876655444433 233455678899999 887655444 22224445556655544433
Q ss_pred Ccc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 87 NGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 87 ~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
.+. ...|++.+....++.+|..+|+++.|.+.++++++.+|++..+....+++.... |++++|...|++
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~ 218 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN--GEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--ccHHHHHHHHHH
Confidence 322 234788899999999999999999999999999999999987777777776655 789999999999
Q ss_pred HHhhc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC--------
Q psy3174 158 LIDKY---------GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS-------- 217 (265)
Q Consensus 158 l~~~~---------p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~-------- 217 (265)
+.... |..+.++..+|.++..+|++++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 98876 556678999999999999999999999999987 6679999999999999987654
Q ss_pred --CCChhhhcHH
Q psy3174 218 --VSPPFLFRSD 227 (265)
Q Consensus 218 --p~hp~~~~~~ 227 (265)
|+++.+....
T Consensus 299 ~~p~~~~~~~~l 310 (330)
T 3hym_B 299 LRRDDTFSVTML 310 (330)
T ss_dssp TCSCCHHHHHHH
T ss_pred cCCCchHHHHHH
Confidence 8888665543
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.57 E-value=7.4e-14 Score=126.29 Aligned_cols=199 Identities=10% Similarity=-0.045 Sum_probs=115.0
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCc
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e 88 (265)
.+..|-.|+|.+|+..+.++...+|+.. .....+.+.+...|+++.++... .+....++..++..+...++.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNT-GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4566778888888887655544444432 22344456677777776544322 3333444444444433333221
Q ss_pred c---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 89 S---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 89 ~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
. ...|++.+....++.++..+|+++.|.+.|+++++.+|+........+.+.... |++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL--GRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHH
Confidence 1 123666666666666666666666666666666666666654443333333222 55666666666666
Q ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 160 DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 160 ~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
...|..+..++.+|.++..+|++++|...++++++. +++.+.+++.++...|+..++
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666666666666666666655 444556666666666665554
No 8
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=7.9e-13 Score=107.39 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=135.6
Q ss_pred cCCcch-hHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC
Q psy3174 6 DNEVDE-LFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI 83 (265)
Q Consensus 6 ~~~~de-lf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~ 83 (265)
|+|... ++.+ ...+-.|+|++|+..+++.-..+|+. .+....+.++|..+|+++.++.. +....
T Consensus 1 ~ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~a~~~--------~~~~~----- 66 (184)
T 3vtx_A 1 MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-VETLLKLGKTYMDIGLPNDAIES--------LKKFV----- 66 (184)
T ss_dssp ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHH-----
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHH--------HHHHH-----
Confidence 344333 4555 44556799999999987665555554 23455667889999999876662 11111
Q ss_pred CCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 84 PSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 84 ~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
...++..+.....+.++...++++.|.+.+.++.+.+|++.-.....+.+.... |++++|...|+++.+..|
T Consensus 67 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 67 ------VLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM--GEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp ------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCT
T ss_pred ------hcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh--CCchhHHHHHHHHHHhcc
Confidence 233567788899999999999999999999999999999987777777776655 789999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++.++..+|.++..+|++++|...+++|++.+|+
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999887
No 9
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=4.2e-13 Score=112.28 Aligned_cols=190 Identities=9% Similarity=-0.039 Sum_probs=141.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTH 95 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~ 95 (265)
...+..|+|.+|+..+++....+|+. ......+.++|..+|+++.++.. +..... ..+.+
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~~ 90 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAF--------YDKALE-----------LDSSA 90 (243)
T ss_dssp -----------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTTC
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHH-----------cCCcc
Confidence 55677899999988876655555543 23445557888888888876662 121111 13456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
.+....++.++..+|+++.|.+.++++++.+|++.......+.+.+.. |++++|...|+++....|.++..+..+|.+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL--EQPKLALPYLQRAVELNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 788899999999999999999999999999988876666666665545 789999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSD 227 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~ 227 (265)
++.+|++++|...+.++++. +++++.+++.++..+|+..++. |+++.+....
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 99999999999999999887 6778999999999999988764 7777665543
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.54 E-value=1.1e-12 Score=115.03 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=83.8
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHH------------HHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQL------------CSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~l------------a~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
.|.+.+....++.++..+|+++.|.+.++++++.+|++..... ..+.+.+ ..|++++|...|+++.
T Consensus 184 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~ 261 (359)
T 3ieg_A 184 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI--RDGRYTDATSKYESVM 261 (359)
T ss_dssp CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 3666667777777777777777777777777766666654211 1122222 2356777777777777
Q ss_pred hhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 160 DKYGSTPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 160 ~~~p~t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
...|.++. ++..+|.++..+|++++|...++++++. +|+++.+++.++..+|+..++. |+++.
T Consensus 262 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 262 KTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 77676543 3445677777777777777777777765 5566777777777777765543 66665
Q ss_pred hhcH
Q psy3174 223 LFRS 226 (265)
Q Consensus 223 ~~~~ 226 (265)
+...
T Consensus 342 ~~~~ 345 (359)
T 3ieg_A 342 IREG 345 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.53 E-value=2.1e-12 Score=113.20 Aligned_cols=194 Identities=12% Similarity=0.074 Sum_probs=154.1
Q ss_pred cchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcC
Q psy3174 9 VDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKN 87 (265)
Q Consensus 9 ~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~ 87 (265)
++.++.. +..+..|+|.+|+..++++...+|+. .........++..+|+++.++.. +.....
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~-------- 65 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPD--------LTKVIA-------- 65 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHH--------HHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHccCHHHHHHH--------HHHHHH--------
Confidence 3445555 66788999999999986655545443 23456667889999999877662 221111
Q ss_pred cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC---CcHHHHHHH------------HHHHHHhccccHHHHH
Q psy3174 88 GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE---DHTLTQLCS------------AWVHIANNVDKLNEAF 152 (265)
Q Consensus 88 e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~---d~~l~~la~------------a~v~l~~g~~~~~eA~ 152 (265)
..|++.+....++.++..+|+++.|.+.++++++.+| ++....... +.+. ...|++++|.
T Consensus 66 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--~~~~~~~~A~ 140 (359)
T 3ieg_A 66 ---LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA--FDGADYTAAI 140 (359)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCHHHHH
T ss_pred ---hCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHH--HHccCHHHHH
Confidence 1356779999999999999999999999999999999 766544333 2222 3348899999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CC
Q psy3174 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VS 219 (265)
Q Consensus 153 ~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~ 219 (265)
..|+++.+..|.++..+..+|.++..+|++++|...+.++++. +++++.+++.++..+|+..++. |+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 141 TFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 9999999999999999999999999999999999999999998 7889999999999999987754 88
Q ss_pred Chhhh
Q psy3174 220 PPFLF 224 (265)
Q Consensus 220 hp~~~ 224 (265)
++.+.
T Consensus 221 ~~~~~ 225 (359)
T 3ieg_A 221 HKRCF 225 (359)
T ss_dssp CHHHH
T ss_pred chHHH
Confidence 88754
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.53 E-value=9.3e-14 Score=124.40 Aligned_cols=204 Identities=13% Similarity=0.008 Sum_probs=146.4
Q ss_pred hhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcC
Q psy3174 11 ELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSI 83 (265)
Q Consensus 11 elf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~ 83 (265)
.+|.. ...+-.|+|.+|+..+++.....|+. ......+.++|..+|+++.++..+ .+....++..++..+..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 34544 77788999999999986665545543 234556678899999998766555 33335556666665554
Q ss_pred CCcCcc---------cccC----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHH
Q psy3174 84 PSKNGS---------SNFG----------THLEINALKIHTYLTMYRNDLALKELKVMQDKDED--HTLTQLCSAWVHIA 142 (265)
Q Consensus 84 ~~~~e~---------~~~~----------~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d--~~l~~la~a~v~l~ 142 (265)
.++.+. ...| ........++.++..+|+++.|.+.++++++.+|+ ++.+....+.+...
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 444322 1112 22334445588999999999999999999999988 66555555555544
Q ss_pred hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
. |++++|...|+++....|.++.+++.+|.++..+|++++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 226 ~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 226 S--GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp H--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred C--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 4 78999999999999999999999999999999999999999999999987 6678999999999999998765
No 13
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.50 E-value=2e-13 Score=121.50 Aligned_cols=206 Identities=8% Similarity=-0.104 Sum_probs=142.4
Q ss_pred HhhhhccHHHHHH-HHhhcc---cCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCc
Q psy3174 17 NSYYLGNYQQCIK-EGQRLK---ATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 17 ~~fy~G~Y~~~i~-~~~~~~---~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~ 86 (265)
...++|+|.+++. .+++.- +.+|.......+...++++..|+++.++..+ .+....++..++..+...++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5678999999998 654332 2333223445566788999999998766554 23334555556655544443
Q ss_pred Ccc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHH----------------HHHHHHH
Q psy3174 87 NGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQL----------------CSAWVHI 141 (265)
Q Consensus 87 ~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~l----------------a~a~v~l 141 (265)
.+. ...|++.+....++.+|..+|+++.|.+.++++++.+|++..... ..+.+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-- 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH--
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH--
Confidence 322 234889999999999999999999999999999998887653321 11111
Q ss_pred HhccccHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 142 ANNVDKLNEAFYTLQDLIDKYGS--TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~~p~--t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
...|++++|..+|+++....|. .+..++.+|.++..+|++++|...++++++. ++.++.+++.++..+|+..++
T Consensus 192 -~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 -LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred -hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 1347899999999999999998 7889999999999999999999999999887 667889999999999998776
Q ss_pred C----------CCChhhhc
Q psy3174 217 S----------VSPPFLFR 225 (265)
Q Consensus 217 ~----------p~hp~~~~ 225 (265)
. |+++.+..
T Consensus 271 ~~~~~~al~~~~~~~~~~~ 289 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRY 289 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 4 77775543
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=1.6e-12 Score=109.92 Aligned_cols=134 Identities=10% Similarity=-0.027 Sum_probs=113.5
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQD--KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~--~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.|.+.+....++.+|..+|++++|.+.++++++ ..+++.......+++.+.. |++++|...|+++....|..+..+
T Consensus 101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~ 178 (252)
T 2ho1_A 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM--KKPAQAKEYFEKSLRLNRNQPSVA 178 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCcccHHHH
Confidence 356788899999999999999999999999998 7777776666666665545 789999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSD 227 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~ 227 (265)
..+|.++..+|++++|...++++++. +++.+..++.++..+|+..++. |++|.+..+.
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999987 7778889999999999877653 7777766543
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.50 E-value=2.2e-12 Score=117.98 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=113.7
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHH------------HHHHHHhccccHHHHHHHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCS------------AWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~------------a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
.|++++....++.+|..+|+++.|.+.++++++.+|++....... +.... ..|++++|...|+++.
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI--RDGRYTDATSKYESVM 284 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999887654332 33333 3378999999999999
Q ss_pred hhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChh
Q psy3174 160 DKYGSTPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPF 222 (265)
Q Consensus 160 ~~~p~t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~ 222 (265)
...|.++. ++..+|.++.++|++++|...++++++. +++++.+++.++..+|+..++. |+++.
T Consensus 285 ~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 285 KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence 99998643 7889999999999999999999999976 6779999999999999987754 99887
Q ss_pred hhcHHH
Q psy3174 223 LFRSDE 228 (265)
Q Consensus 223 ~~~~~~ 228 (265)
+.....
T Consensus 365 ~~~~l~ 370 (450)
T 2y4t_A 365 IREGLE 370 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 755443
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.49 E-value=3.2e-12 Score=113.58 Aligned_cols=203 Identities=12% Similarity=0.016 Sum_probs=131.2
Q ss_pred hhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcC
Q psy3174 11 ELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSI 83 (265)
Q Consensus 11 elf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~ 83 (265)
.++.. +..+-.|+|.+|+..+++.....|+. ......+.++|..+|+++.++..+ .+....++..++..+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444 67778899999999886665555543 234455678899999988665544 23334444444444332
Q ss_pred CCcCcc----------------------------------------------------------cccCC--CHHHHHHHH
Q psy3174 84 PSKNGS----------------------------------------------------------SNFGT--HLEINALKI 103 (265)
Q Consensus 84 ~~~~e~----------------------------------------------------------~~~~~--~lE~~al~v 103 (265)
.++.+. ...|+ .......++
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 222111 01144 566777777
Q ss_pred HHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
.+|..+|+++.|.+.++++++.+|++..+....+.+.... |++++|...|+++....|..+..+..+|.++..+|+++
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG--NQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 7777777777777777777777777665544444444433 56777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcC---C-----------HHHHHHHHHHHHHcCCCCcc
Q psy3174 184 EAWDLLQDTAGD---S-----------EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 184 EAe~~l~~al~~---~-----------pdtl~nl~~~~~~~Gk~~ea 216 (265)
+|...++++++. + ++++.+++.++..+|+.+++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 777777777765 3 45667777777777776543
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=4.2e-13 Score=113.60 Aligned_cols=162 Identities=14% Similarity=-0.029 Sum_probs=133.9
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.....++++.+|+++.++.. ++ ..+ ...|++++....++.++..+|++++|.+.|+++++.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~--------~~---~al--------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTL--------FE---RAL--------KENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHH--------HH---HHH--------TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH--------HH---HHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556778888888866652 11 111 245788999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHh---------ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-
Q psy3174 126 DEDHTLTQLCSAWVHIAN---------NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD- 195 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~---------g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~- 195 (265)
+|+++.+....+.+.... ..|++++|...|+++.+..|+.+..+..+|.++..+|++++|...++++++.
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 999986655555554433 0167999999999999999999999999999999999999999999999987
Q ss_pred -CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 196 -SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 196 -~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+|+++.+++.++..+|+.+++. |+++.+...
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 190 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 8889999999999999998765 888866543
No 18
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-12 Score=109.99 Aligned_cols=190 Identities=7% Similarity=-0.042 Sum_probs=131.3
Q ss_pred hhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc
Q psy3174 11 ELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 11 elf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
.++.. ...+..|+|.+|+..+++..... ........+.++|..+|+++.++..+ ...........
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~--------~~a~~~~~~~~---- 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTL--------NDAVEQGREMR---- 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHH--------HHHHHHHHHTT----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHH--------HHHHHhCcccc----
Confidence 34544 55667899999999875543322 22334566678899999998777632 11111100000
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--------------------------cCCCcHHHHHHHHHHHHHh
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD--------------------------KDEDHTLTQLCSAWVHIAN 143 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~--------------------------~~~d~~l~~la~a~v~l~~ 143 (265)
..++........++.++..+|+++.|.+.++++++ .+|+........+++.+..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 01112256666666777777777777777777666 5555555555555554444
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
|++++|...|+++....|.++..+..+|.++..+|++++|...+.++++. +++++.+++.++..+|+..++
T Consensus 153 --~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 153 --SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp --TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77999999999999999988889999999999999999999999999887 677888999999999987654
No 19
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=7.7e-13 Score=112.95 Aligned_cols=214 Identities=10% Similarity=-0.054 Sum_probs=142.7
Q ss_pred chhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-------CChH--HHHHHHHHH
Q psy3174 10 DELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-------LPEE--LSCIKVLAE 79 (265)
Q Consensus 10 delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-------~~~~--l~~~~~~A~ 79 (265)
+.++.. ...|-.|+|++|+..+++....+|+. ......+.++|..+|+++.++..+ .++. ..++..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS-PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC-STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344444 67778899999999986665555543 234556678999999998766543 1112 223444554
Q ss_pred HhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHH
Q psy3174 80 YLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNE 150 (265)
Q Consensus 80 ~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~e 150 (265)
.+...++.+. ...|++.+....++.+|..+|+++.|.+.++++++.+|++.......++..... +++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN--KEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH--HHHHH
Confidence 4443333221 224677778888888888888888888888888887777765554444222223 37888
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhcC---CH--------HHHHHHHHHHHHcCCCCcc
Q psy3174 151 AFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK---YEEAWDLLQDTAGD---SE--------DTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 151 A~~~~~el~~~~p~t~~lLn~~A~~~~~~g~---~eEAe~~l~~al~~---~p--------dtl~nl~~~~~~~Gk~~ea 216 (265)
|...|+++.+..|.++..+..+|.++..+|+ +++|...++++++. .| +++.+++.++..+|+..++
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888777777778888888887 77788888887765 22 3556777788778777655
Q ss_pred C----------CCChhhhcH
Q psy3174 217 S----------VSPPFLFRS 226 (265)
Q Consensus 217 ~----------p~hp~~~~~ 226 (265)
. |++|.++..
T Consensus 241 ~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHH
Confidence 4 777766554
No 20
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.48 E-value=9.7e-13 Score=124.93 Aligned_cols=207 Identities=13% Similarity=0.020 Sum_probs=141.1
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
.-.+-.|+|.+|+..++++....|+. ......+..++..+|+++.++..+ .+.....+..++..+...++.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYN-LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCccc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence 34455667777766654443333321 222334456666666665444332 22233444444444433333221
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|.+.+....++.+|...|++++|.+.|+++++.+|++..+....+.+.... |++++|..+|+++.+
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--GNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 224778888888899999999999999999999888888776665555554444 679999999999988
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------C----HHHHHHHHHHHHHcCCCCccC----------CCC
Q psy3174 161 KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------S----EDTLINNMVTAGRLGKGNEMS----------VSP 220 (265)
Q Consensus 161 ~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~----pdtl~nl~~~~~~~Gk~~ea~----------p~h 220 (265)
..|.++..++.++.++.++|++++|..+++++++. + +.++.+++.++...|+.+++. |++
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 88888888999999999999999999999988875 3 447788899999999887654 777
Q ss_pred hhhhc
Q psy3174 221 PFLFR 225 (265)
Q Consensus 221 p~~~~ 225 (265)
+.+..
T Consensus 550 ~~~~~ 554 (597)
T 2xpi_A 550 ANVHT 554 (597)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 75544
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=2.2e-12 Score=104.71 Aligned_cols=148 Identities=12% Similarity=-0.016 Sum_probs=126.6
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
+..+|..+|+++.++.. ++... ...|++++++..++.+|..+|+++.|.+.+.++....++
T Consensus 11 lG~~~~~~g~~~~A~~~--------~~~al-----------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 71 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRA--------YKKVL-----------KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71 (184)
T ss_dssp HHHHHHHHTCHHHHHHH--------HHHHH-----------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCHHHHHHH--------HHHHH-----------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch
Confidence 46778899999877762 22111 124678999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHH
Q psy3174 129 HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMV 205 (265)
Q Consensus 129 ~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~ 205 (265)
+.......+++.... +++++|...++++....|.++..+..+|.++..+|++++|...++++++. +++++.+++.
T Consensus 72 ~~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 149 (184)
T 3vtx_A 72 SAEAYYILGSANFMI--DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL 149 (184)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH
Confidence 987776666665555 78999999999999999999999999999999999999999999999987 7778999999
Q ss_pred HHHHcCCCCccC
Q psy3174 206 TAGRLGKGNEMS 217 (265)
Q Consensus 206 ~~~~~Gk~~ea~ 217 (265)
++..+|+.+++.
T Consensus 150 ~~~~~g~~~~A~ 161 (184)
T 3vtx_A 150 AYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHCCCHHHHH
Confidence 999999987654
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.46 E-value=6.3e-13 Score=115.58 Aligned_cols=204 Identities=10% Similarity=0.019 Sum_probs=100.7
Q ss_pred cchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHh
Q psy3174 9 VDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYL 81 (265)
Q Consensus 9 ~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l 81 (265)
.+.+|.. +..+..|+|.+|+..++++....|+. ......+..++..+|+++.++..+ .+....++..++..+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3344544 66777899999998876655444432 233445577888899887665544 232334444444443
Q ss_pred cCCCcCcc---------cccCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHccCCCcHHHHHHHH
Q psy3174 82 SIPSKNGS---------SNFGTHLEINALK--------------IH-TYLTMYRNDLALKELKVMQDKDEDHTLTQLCSA 137 (265)
Q Consensus 82 ~~~~~~e~---------~~~~~~lE~~al~--------------v~-~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a 137 (265)
...++.+. ...|.+.+..... +. ++...|+++.|.+.++++++.+|++..+....+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 32222111 1112222222221 22 344445555555555555555554443333333
Q ss_pred HHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 138 WVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 138 ~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
++.... |++++|...|+++.+..|.++..+..+|.++..+|++++|...++++++. +++++.+++.++..+|+..
T Consensus 180 ~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLS--NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHh--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 333323 44555555555555555555555555555555555555555555555544 3444555555555555544
Q ss_pred c
Q psy3174 215 E 215 (265)
Q Consensus 215 e 215 (265)
+
T Consensus 258 ~ 258 (327)
T 3cv0_A 258 L 258 (327)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=3e-12 Score=107.62 Aligned_cols=183 Identities=9% Similarity=0.001 Sum_probs=122.6
Q ss_pred ccCCcchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC
Q psy3174 5 ADNEVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI 83 (265)
Q Consensus 5 ~~~~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~ 83 (265)
+..+++.++.. ...|..|+|++|+..+++....+|........+...++..+|+++.++.. +....
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------~~~al----- 69 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADY--------FDIAI----- 69 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHH--------HHHHH-----
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHH--------HHHHH-----
Confidence 44456666666 55666788888888875544433311113345567778888888766652 11111
Q ss_pred CCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH--HHHHHHHHHHH---hccccHHHHHHHHHHH
Q psy3174 84 PSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL--TQLCSAWVHIA---NNVDKLNEAFYTLQDL 158 (265)
Q Consensus 84 ~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l--~~la~a~v~l~---~g~~~~~eA~~~~~el 158 (265)
...|++.+....++.+|..+|+++.|.+.++++++.+|++.. ..++.+|.+++ ...|++++|...|+++
T Consensus 70 ------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 70 ------KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp ------HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 123556778888888888888888888888888888887762 23333344333 2337788888888888
Q ss_pred HhhcCC--CHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHhcC---CHHHHHHHHHH
Q psy3174 159 IDKYGS--TPMLVNAQVAVLIAQDKY---------------------------EEAWDLLQDTAGD---SEDTLINNMVT 206 (265)
Q Consensus 159 ~~~~p~--t~~lLn~~A~~~~~~g~~---------------------------eEAe~~l~~al~~---~pdtl~nl~~~ 206 (265)
....|. .+..+.++|.+++.+|+. ++|...++++++. +++++..+..+
T Consensus 144 l~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 144 TDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 888887 778888888888888888 7888888888877 55555555444
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.45 E-value=3e-12 Score=121.54 Aligned_cols=208 Identities=11% Similarity=-0.094 Sum_probs=159.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
.-..-.|++.+++..++++....|+. ......+...|...|+++.++..+ .+....++..++..+...++.+.
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRHPEK-AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44567899999998876554434432 223344567889999998666544 23334455555555444333222
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|++......++.+|...|++++|.+.|+++++.+|+++.+....+++.... |++++|..+|+++.+
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK--SDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 235788899999999999999999999999999999999987777777776655 789999999999987
Q ss_pred h------cCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCC
Q psy3174 161 K------YGST-PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSP 220 (265)
Q Consensus 161 ~------~p~t-~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~h 220 (265)
. .|+. ...++.+|.++..+|++++|...++++++. ++.++.+++.++...|+..++. |++
T Consensus 504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 7 4443 679999999999999999999999999987 7789999999999999987754 887
Q ss_pred hhhhcH
Q psy3174 221 PFLFRS 226 (265)
Q Consensus 221 p~~~~~ 226 (265)
+.+...
T Consensus 584 ~~~~~~ 589 (597)
T 2xpi_A 584 IMASDL 589 (597)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 765544
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=2.1e-11 Score=100.19 Aligned_cols=190 Identities=12% Similarity=-0.015 Sum_probs=142.5
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCC
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGT 94 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~ 94 (265)
....+..|+|.+|+..+++.....|+. ......+..+|..+|+++.++.. +..... ..|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~-----------~~~~ 74 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQES--------FRQALS-----------IKPD 74 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHH--------HHHHHH-----------hCCC
Confidence 366778899999999876554444432 22345557888899998866652 221111 1245
Q ss_pred CHHHHHHHHHHHHHc-CChHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 95 HLEINALKIHTYLTM-YRNDLALKELKVMQD--KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 95 ~lE~~al~v~~~l~~-~r~d~Aek~l~~~~~--~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
+.+....++.++..+ |+++.|.+.++++++ ..++........+++.... |++++|...|+++....|.++..+..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~ 152 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ--GQFGLAEAYLKRSLAAQPQFPPAFKE 152 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCchHHHH
Confidence 678889999999999 999999999999998 5555555555555555444 78999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD----SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+|.++..+|++++|...++++++. +++.+..++.++...|+..++. |++|.+..+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999876 4557777777777787765432 777766554
No 26
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.44 E-value=9e-12 Score=113.93 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=145.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTH 95 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~ 95 (265)
...+-.|+|.+|+..++++....|+. ......+.++|..+|+++.++.. +..... ..|++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~-----------~~p~~ 93 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPD--------LTKVIQ-----------LKMDF 93 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHCCCHHHHHHH--------HHHHHh-----------cCCCc
Confidence 55667799999998876554444433 23345557788888988876652 111111 13567
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH---HHHHHH------------HHHHHHhccccHHHHHHHHHHHHh
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT---LTQLCS------------AWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~---l~~la~------------a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
......++.+|..+|+++.|.+.|+++++.+|++. ...... +.+.. ..|++++|...|+++..
T Consensus 94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF--GSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999876 332221 22222 33789999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhc
Q psy3174 161 KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFR 225 (265)
Q Consensus 161 ~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~ 225 (265)
..|.++.+++.+|.++..+|++++|...+.++++. +++++.+++.++...|+..++. |+++.+..
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 249 (450)
T 2y4t_A 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 99999999999999999999999999999999886 7889999999999999987764 88887643
No 27
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1e-12 Score=121.56 Aligned_cols=208 Identities=9% Similarity=-0.063 Sum_probs=160.8
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
...+..|+|.+|+..+++....+|. ......+.++|..+|+++.++..+ .+....++..++..+...++.+.
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 4466789999999998665554554 445566678899999988655544 22223444555555444443322
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|.+.+....++.++...|+++.|.+.++++++..|++..+....+++.... |++++|...|+++..
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK--NDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
Confidence 235788899999999999999999999999999999988876666666665555 789999999999998
Q ss_pred hcCCCH------HHHHHHHHHHHH---cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------C
Q psy3174 161 KYGSTP------MLVNAQVAVLIA---QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------V 218 (265)
Q Consensus 161 ~~p~t~------~lLn~~A~~~~~---~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p 218 (265)
..|.++ ..+..+|.++.. +|++++|...++++++. +++++.+++.++..+|+..++. |
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 887654 388999999999 99999999999999987 6778899999999999987764 8
Q ss_pred CChhhhcHH
Q psy3174 219 SPPFLFRSD 227 (265)
Q Consensus 219 ~hp~~~~~~ 227 (265)
+++.+....
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 888776543
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.43 E-value=2.2e-12 Score=112.15 Aligned_cols=198 Identities=10% Similarity=-0.027 Sum_probs=148.3
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH-HHHHHHH------------
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCIKVL------------ 77 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~~~~------------ 77 (265)
...+..|+|.+|+..+++....+|+. ......+.++|..+|+++.++..+ ..|. ......+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHH
Confidence 55677899999999976655444443 234555678899999998666543 1111 1111111
Q ss_pred --HH-HhcCCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc
Q psy3174 78 --AE-YLSIPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV 145 (265)
Q Consensus 78 --A~-~l~~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~ 145 (265)
+. .+...++.+. ...|++.+....++.++..+|+++.|.+.++++++.+|++..+....+++....
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 219 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG-- 219 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--
Confidence 21 0111111111 224788999999999999999999999999999999999887766666665555
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--C-------------HHHHHHHHHHHHHc
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--S-------------EDTLINNMVTAGRL 210 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~-------------pdtl~nl~~~~~~~ 210 (265)
|++++|...|+++.+..|.++..+..+|.++..+|++++|...++++++. + +.++.+++.++..+
T Consensus 220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999999987 2 45778999999999
Q ss_pred CCCCcc
Q psy3174 211 GKGNEM 216 (265)
Q Consensus 211 Gk~~ea 216 (265)
|+..++
T Consensus 300 g~~~~A 305 (327)
T 3cv0_A 300 NRPDLV 305 (327)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 987654
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.43 E-value=2.6e-12 Score=114.96 Aligned_cols=196 Identities=10% Similarity=-0.054 Sum_probs=146.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-----CChH-HHHH----------HHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEE-LSCI----------KVLAE 79 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~-l~~~----------~~~A~ 79 (265)
.-.+..|+|.+|+..+++.....|+. ......+.++|..+|+++.++..+ ..|. .... ..++.
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence 55667899999999986655444443 234555678899999998766544 1222 1111 11233
Q ss_pred HhcCCCcCcc---------cccCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccH
Q psy3174 80 YLSIPSKNGS---------SNFGT--HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKL 148 (265)
Q Consensus 80 ~l~~~~~~e~---------~~~~~--~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~ 148 (265)
.+...++.+. ...|+ +.+....++.+|..+|+++.|.+.|+++++.+|++..+....+.+.... |++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~ 263 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG--DRS 263 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCH
Confidence 3322222211 22366 8899999999999999999999999999999999886666666555544 789
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCC
Q psy3174 149 NEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS---------------EDTLINNMVTAGRLGKG 213 (265)
Q Consensus 149 ~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~---------------pdtl~nl~~~~~~~Gk~ 213 (265)
++|...|+++.+.+|.++..++.+|.++..+|++++|...++++++.+ +.++.+++.++..+|+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999999999999999999999999999999999999999999999872 34678999999999986
Q ss_pred C
Q psy3174 214 N 214 (265)
Q Consensus 214 ~ 214 (265)
+
T Consensus 344 ~ 344 (365)
T 4eqf_A 344 E 344 (365)
T ss_dssp H
T ss_pred H
Confidence 4
No 30
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=1.8e-11 Score=97.23 Aligned_cols=150 Identities=11% Similarity=-0.023 Sum_probs=123.1
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.....+.+...|+++.++..+ -.. ....|++.+....++.++...|+++.|.+.++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~-----------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLL-----------EQV--------YDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-----------TTT--------CCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHH-----------HHH--------HHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344567788888887665521 000 0234567889999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
+|++..+....+.+.... +++++|...|+++...+|.++..+..+|.++..+|++++|..++.++++. ++.++.+
T Consensus 72 ~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQV--QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp CTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 998887666666665555 78999999999999999999999999999999999999999999999987 6778999
Q ss_pred HHHHHHHcCCCCcc
Q psy3174 203 NMVTAGRLGKGNEM 216 (265)
Q Consensus 203 l~~~~~~~Gk~~ea 216 (265)
++.++..+|+..++
T Consensus 150 la~~~~~~~~~~~A 163 (186)
T 3as5_A 150 IAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 99999999987654
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1e-11 Score=114.85 Aligned_cols=203 Identities=9% Similarity=0.026 Sum_probs=158.2
Q ss_pred hccHHHHHHHHhhccc-----C--Ch------hhhhhHHHHHHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhc
Q psy3174 21 LGNYQQCIKEGQRLKA-----T--DP------KVLLEKDFYVCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLS 82 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~-----~--~~------~~~~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~ 82 (265)
.|+|.+|+..+++... . .| .........+.+++..+|+++.++..+ ..|...++..++..+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA 281 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 7999999998755433 2 21 223344555678899999998766554 1222555666676665
Q ss_pred CCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHH
Q psy3174 83 IPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFY 153 (265)
Q Consensus 83 ~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~ 153 (265)
..++.+. ...|++.+....++.++..+|+++.|.+.++++++.+|++..+....+++.... |++++|..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~ 359 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE--NKFDDCET 359 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT--TCHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc--CCHHHHHH
Confidence 5554432 345888999999999999999999999999999999999876655555554434 78999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHH------HHHHHHHHHHH---cCCCCccC----
Q psy3174 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SED------TLINNMVTAGR---LGKGNEMS---- 217 (265)
Q Consensus 154 ~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pd------tl~nl~~~~~~---~Gk~~ea~---- 217 (265)
.|+++....|.++..++.+|.++..+|++++|...+.++++. +++ ++.+++.++.. +|+..++.
T Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 360 LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999987 433 88999999999 99887654
Q ss_pred ------CCChhhhc
Q psy3174 218 ------VSPPFLFR 225 (265)
Q Consensus 218 ------p~hp~~~~ 225 (265)
|+++.+..
T Consensus 440 ~a~~~~~~~~~~~~ 453 (514)
T 2gw1_A 440 KASKLDPRSEQAKI 453 (514)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHHhCcccHHHHH
Confidence 88776543
No 32
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2.4e-12 Score=122.05 Aligned_cols=208 Identities=9% Similarity=-0.061 Sum_probs=126.3
Q ss_pred cchhHHHHHhhhhcc---------------HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccCh-hHHhhhcCChHHH
Q psy3174 9 VDELFDVRNSYYLGN---------------YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKY-KVVLEEKLPEELS 72 (265)
Q Consensus 9 ~delf~vr~~fy~G~---------------Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~-~~~l~ei~~~~l~ 72 (265)
.++|+..+..||..+ +.+++..++......++ .........++|..+|++ +.++..+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~------ 126 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLL------ 126 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHH------
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHH------
Confidence 455666666666533 33444443322223332 233445556777788887 6555521
Q ss_pred HHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-------
Q psy3174 73 CIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV------- 145 (265)
Q Consensus 73 ~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~------- 145 (265)
+... ...|++.+++..++.+|..+|++++|.+.|+++++.+|+ ..+....+++.. ..
T Consensus 127 --~~al-----------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~--~~~~~~~~~ 190 (474)
T 4abn_A 127 --SKAV-----------KLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR--QLQTDSGDE 190 (474)
T ss_dssp --HHHH-----------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT--TCCCSCHHH
T ss_pred --HHHH-----------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH--HhccCChhh
Confidence 1111 113556777777777777777777777777777777776 333333333322 23
Q ss_pred --ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhcCCH------HHHHHHHHHHHH
Q psy3174 146 --DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ--------DKYEEAWDLLQDTAGDSE------DTLINNMVTAGR 209 (265)
Q Consensus 146 --~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~--------g~~eEAe~~l~~al~~~p------dtl~nl~~~~~~ 209 (265)
+++++|...|+++.+..|.++..++.+|.+++.+ |++++|...++++++.+| +++.|++.++..
T Consensus 191 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY 270 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777 777777777777777543 467777777777
Q ss_pred cCCCCccC----------CCChhhhcH----HHHHHHHHHHHhh
Q psy3174 210 LGKGNEMS----------VSPPFLFRS----DETTATLDACGLQ 239 (265)
Q Consensus 210 ~Gk~~ea~----------p~hp~~~~~----~~~~~~FD~~~~~ 239 (265)
+|+..++. |+++.+... ......+++....
T Consensus 271 ~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 271 EESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776654 777654432 2233444544443
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=6.3e-12 Score=106.99 Aligned_cols=193 Identities=13% Similarity=0.016 Sum_probs=146.4
Q ss_pred hccHHHHHHHHhhcccC---ChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc--
Q psy3174 21 LGNYQQCIKEGQRLKAT---DPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS-- 89 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~---~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~-- 89 (265)
.|+|.+|+..++++... ++.........+.++|..+|+++.++..+ .+....++..++..+...++.+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 48899999987555432 33344555666788899999998766544 33335555566665554444322
Q ss_pred -------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 90 -------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 90 -------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
...|++.+....++.+|..+|+++.|.+.++++++.+|++....+. ..+....+++++|...|++.....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW---LYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHH---HHHHHHhcCHHHHHHHHHHHHhcC
Confidence 2347889999999999999999999999999999999998754433 333334488999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCccC
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS-------EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~-------pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|.+...++ ++.+++..+++++|...+.++++.+ ++++.+++.++..+|+..++.
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 87766554 7778889999999999999999883 467889999999999987765
No 34
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.39 E-value=7.5e-13 Score=106.13 Aligned_cols=109 Identities=6% Similarity=-0.038 Sum_probs=56.2
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH
Q psy3174 105 TYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE 184 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eE 184 (265)
++...|++|.|...++++...+|++....+..|.+.+.. +++++|...|+++....|.++..++.+|.|+..+|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEA--KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence 444445555555555555555555544443333333333 445555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 185 AWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 185 Ae~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
|...++++++. +|+++.+++.++..+|+..+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 55555555554 44455555555555555443
No 35
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.39 E-value=1.2e-11 Score=106.37 Aligned_cols=178 Identities=15% Similarity=0.105 Sum_probs=132.1
Q ss_pred HHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCC---HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 45 KDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTH---LEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 45 ~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~---lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
..+...+.++..|+++.++.. +-..+. .+|++ .++.+.++.+|..+|+++.|.+.|++
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~-----------~~~~l~--------~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 77 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEY-----------FKAVFT--------YGRTHEWAADAQFYLARAYYQNKEYLLAASEYER 77 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH-----------HHHHGG--------GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH-----------HHHHHH--------hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 456778889999999876662 222222 22344 89999999999999999999999999
Q ss_pred HHccCCCcHHH---HHHHHHHHHH------hccccHHHHHHHHHHHHhhcCCCHHHH-----------------HHHHHH
Q psy3174 122 MQDKDEDHTLT---QLCSAWVHIA------NNVDKLNEAFYTLQDLIDKYGSTPMLV-----------------NAQVAV 175 (265)
Q Consensus 122 ~~~~~~d~~l~---~la~a~v~l~------~g~~~~~eA~~~~~el~~~~p~t~~lL-----------------n~~A~~ 175 (265)
+++..|++... ....+.+.+. ...+++++|...|+++...+|+++... ..+|.+
T Consensus 78 ~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 78 FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998865322 2222333332 015889999999999999999876544 678999
Q ss_pred HHHcCCHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCC----------CCccC----------CCChhhhcHHHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGDS------EDTLINNMVTAGRLGK----------GNEMS----------VSPPFLFRSDET 229 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~~------pdtl~nl~~~~~~~Gk----------~~ea~----------p~hp~~~~~~~~ 229 (265)
++.+|+|++|...++++++.+ ++.+.+++.++..+|. ..++. |+||++......
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 999999999999999999873 4488999999998854 34433 999988776655
Q ss_pred HHHHHHHHhhcc
Q psy3174 230 TATLDACGLQSN 241 (265)
Q Consensus 230 ~~~FD~~~~~~~ 241 (265)
....-+-..+|.
T Consensus 238 l~~~~~~~~~~~ 249 (261)
T 3qky_A 238 YTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 544444444443
No 36
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=2.6e-11 Score=121.56 Aligned_cols=154 Identities=7% Similarity=-0.114 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy3174 43 LEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVM 122 (265)
Q Consensus 43 ~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~ 122 (265)
.+....+..+|..+|+++.++.. ++... ...|++.++...++.+|..+||+++|.+.|+++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~--------~~kAl-----------~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRL--------YRKAL-----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH--------HHHHH-----------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH--------HHHHH-----------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556667889999999877662 22111 124678899999999999999999999999999
Q ss_pred HccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHH
Q psy3174 123 QDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDT 199 (265)
Q Consensus 123 ~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdt 199 (265)
++++|++..+....+.+.... |++++|...|+++.+..|+.+..++++|.++..+|++++|...+++|+++ +++.
T Consensus 70 l~l~P~~~~a~~nLg~~l~~~--g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a 147 (723)
T 4gyw_A 70 IRISPTFADAYSNMGNTLKEM--QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147 (723)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 999999985554444444434 78999999999999999999999999999999999999999999999998 7779
Q ss_pred HHHHHHHHHHcCCCCccC
Q psy3174 200 LINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ea~ 217 (265)
+.|++.++..+|+..++.
T Consensus 148 ~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHHHHHHHTTCCTTHH
T ss_pred HhhhhhHHHhcccHHHHH
Confidence 999999999999998753
No 37
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=9.3e-11 Score=92.98 Aligned_cols=162 Identities=12% Similarity=0.051 Sum_probs=130.6
Q ss_pred HHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCC
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGT 94 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~ 94 (265)
....+..|+|.+|+..+++.....|+. ......+.+++..+|+++.++.. +..... ..|.
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~ 74 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADAFD-VDVALHLGIAYVKTGAVDRGTEL--------LERSLA-----------DAPD 74 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTSCC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCccC-hHHHHHHHHHHHHcCCHHHHHHH--------HHHHHh-----------cCCC
Confidence 356677899999999987666555543 23445567889999998876652 121111 1345
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+.++...++.++...|+++.|.+.++++.+..|++.......+++.... |++++|...|+++....|.++..+..+|.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 152 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL--GRFDEAIDSFKIALGLRPNEGKVHRAIAF 152 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc--CcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 7789999999999999999999999999999999887776666666555 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
++..+|++++|...++++++.+|+
T Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 153 SYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999887443
No 38
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=4.4e-12 Score=127.12 Aligned_cols=134 Identities=13% Similarity=-0.039 Sum_probs=118.4
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.+++..++.+|..+||+++|.+.|+++++++|++..+....+.+.... |++++|...|+++.+..|+.+..++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~--g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--GKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35788999999999999999999999999999999999986555555444434 8899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
++|.++..+|++++|...+++|+++ +++++.|++.++..+|+.++++ |+++.+...
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 9999999999999999999999998 6779999999999999998765 999876544
No 39
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.36 E-value=1.4e-11 Score=114.99 Aligned_cols=172 Identities=9% Similarity=-0.027 Sum_probs=110.8
Q ss_pred ccHHHHHHHHhhcccCChhhh------hhHHHHHHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhcCCCcCcc-
Q psy3174 22 GNYQQCIKEGQRLKATDPKVL------LEKDFYVCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLSIPSKNGS- 89 (265)
Q Consensus 22 G~Y~~~i~~~~~~~~~~~~~~------~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~~~~~~e~- 89 (265)
|.|.+|+..++++....|+.. ........+++...|+++.++..+ ..|...++..++..+...++.+.
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH
Confidence 578888877655554444321 222334456677788877665544 22335555566666655554332
Q ss_pred --------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 90 --------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 90 --------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
...|++.+....++.++..+|+++.|.+.++++++.+|++..+....+++.... |++++|..+|+++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ--GKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Confidence 224677777777777777777777777777777777777665555555554444 6677777777777777
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+|.++..+..+|.++..+|++++|...++++++.
T Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7777777777777777777777777777777665
No 40
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.36 E-value=1.5e-11 Score=96.06 Aligned_cols=112 Identities=12% Similarity=-0.002 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|+..|....++.+|...|++++|.+.|+++++++|++..+....+.+.... |++++|...|+++.+..|..+..+..+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL--MEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh--ccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 566778888999999999999999999999999999986655555555545 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVT 206 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~ 206 (265)
|.++..+|++++|...+++++++ ++++..++..|
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999998 66677777665
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=4.4e-11 Score=100.42 Aligned_cols=148 Identities=11% Similarity=-0.050 Sum_probs=122.1
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.+...++++.+|+++.++.. +......- . +.+....+.++.++..+|+++.|.+.++++++.
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~--------~~~al~~~-~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 71 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEK--------YSEYLKLT-N---------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK 71 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHH--------HHHHHHHT-T---------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHH--------HHHHHhcc-C---------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 45567889999999877762 22221110 0 145578888999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP-------MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~-------~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+|++..+....+++.... |++++|...|+++....|.++ ..+..+|.++..+|++++|...++++++.+|+
T Consensus 72 ~p~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDM--KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp TCSHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred CcchHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999887777777776655 789999999999999999988 56999999999999999999999999998554
Q ss_pred -----HHHHHHHHHHHcCCC
Q psy3174 199 -----TLINNMVTAGRLGKG 213 (265)
Q Consensus 199 -----tl~nl~~~~~~~Gk~ 213 (265)
++.+++.++..+|+.
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 150 KWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 668999999999886
No 42
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.36 E-value=1.6e-11 Score=105.64 Aligned_cols=188 Identities=16% Similarity=0.189 Sum_probs=142.4
Q ss_pred CcchhHHH-HHhhhhccHHHHHHHHhhcccCChhh--hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCC
Q psy3174 8 EVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKV--LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIP 84 (265)
Q Consensus 8 ~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~--~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~ 84 (265)
+++.+|.. ...|-.|+|.+|+..++++....|+. ..+..+.+..+|..+|+++.++.. +..+... .
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~--------~~~~l~~--~- 82 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASE--------YERFIQI--Y- 82 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHH--C-
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHH--------HHHHHHH--C-
Confidence 45556666 67778899999999987776555543 245667778999999999977762 2222221 0
Q ss_pred CcCcccccCCCHHHHHHHHHHHHH--------cCChHHHHHHHHHHHccCCCcHHHH-----------------HHHHHH
Q psy3174 85 SKNGSSNFGTHLEINALKIHTYLT--------MYRNDLALKELKVMQDKDEDHTLTQ-----------------LCSAWV 139 (265)
Q Consensus 85 ~~~e~~~~~~~lE~~al~v~~~l~--------~~r~d~Aek~l~~~~~~~~d~~l~~-----------------la~a~v 139 (265)
.+.+...+.++.++.++.. +|+++.|.+.|+++++..|++.... +..+++
T Consensus 83 -----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~ 157 (261)
T 3qky_A 83 -----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARL 157 (261)
T ss_dssp -----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223557889999999999 9999999999999999999886555 233444
Q ss_pred HHHhccccHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcCCHH------HH
Q psy3174 140 HIANNVDKLNEAFYTLQDLIDKYGS---TPMLVNAQVAVLIAQ----------DKYEEAWDLLQDTAGDSED------TL 200 (265)
Q Consensus 140 ~l~~g~~~~~eA~~~~~el~~~~p~---t~~lLn~~A~~~~~~----------g~~eEAe~~l~~al~~~pd------tl 200 (265)
.... |++++|...|+++...+|+ .+..+..+|.++..+ |++++|...++++++.+|+ ..
T Consensus 158 ~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 235 (261)
T 3qky_A 158 YERR--ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAE 235 (261)
T ss_dssp HHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred HHHc--cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4434 8899999999999999997 455899999999987 9999999999999998554 44
Q ss_pred HHHHHHHHHcCCC
Q psy3174 201 INNMVTAGRLGKG 213 (265)
Q Consensus 201 ~nl~~~~~~~Gk~ 213 (265)
..+..+...+|+.
T Consensus 236 ~~l~~~~~~~~~~ 248 (261)
T 3qky_A 236 ELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666666654
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=7.5e-11 Score=98.40 Aligned_cols=174 Identities=10% Similarity=0.039 Sum_probs=133.7
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTH 95 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~ 95 (265)
.-.+..|+|.+|+..+++.....|.. ......+.++|..+|+++.++.. +..... ..+.+
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~~ 124 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNVYVVKEMYKEAKDM--------FEKALR-----------AGMEN 124 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHhccHHHHHHH--------HHHHHH-----------hCCCC
Confidence 45677899999999976654444432 23345557889999998876652 121111 12456
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
.+....++.++..+|+++.|.+.++++++..|++.......+.+.... |++++|...|+++....|.++..+..+|.+
T Consensus 125 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 202 (243)
T 2q7f_A 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE--GMLDEALSQFAAVTEQDPGHADAFYNAGVT 202 (243)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 788999999999999999999999999999999887766666666555 789999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 176 LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
+..+|++++|...++++++. ++.+..++..+....|
T Consensus 203 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 203 YAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999988 5566666665554443
No 44
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.34 E-value=5.5e-12 Score=102.45 Aligned_cols=107 Identities=8% Similarity=-0.149 Sum_probs=95.1
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
...|++++.++.++.++..+||+++|.+.|+++++.+|+++......+.+.... |++++|...|+++....|+++..+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--EQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCCCCcHHH
Confidence 445889999999999999999999999999999999999986555554444434 889999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++|.|+..+|++++|...++++++..|+
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999998443
No 45
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.34 E-value=2e-11 Score=113.89 Aligned_cols=207 Identities=10% Similarity=-0.069 Sum_probs=159.0
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
.-.+..|+|.+|+..+++....+|+ ......+.+++..+|+++.++..+ .+....++..++..+...++.+.
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 4456688999999997666555555 345666788899999998766544 33334555566665554444322
Q ss_pred ---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 90 ---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 90 ---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...|++.+....++.++..+|+++.|.+.++++++.+|++..+....+++.... |++++|...|+++..
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR--GDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 234888899999999999999999999999999999999887766666666555 789999999999987
Q ss_pred hcCC------CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----
Q psy3174 161 KYGS------TPMLVNAQVAVLIAQ----------DKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS---- 217 (265)
Q Consensus 161 ~~p~------t~~lLn~~A~~~~~~----------g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~---- 217 (265)
..|. ....+..+|.++..+ |++++|...++++++. +++++.+++.++..+|+..++.
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7653 223467789999999 9999999999999987 6779999999999999988765
Q ss_pred ------CCChhhhcH
Q psy3174 218 ------VSPPFLFRS 226 (265)
Q Consensus 218 ------p~hp~~~~~ 226 (265)
|+++.....
T Consensus 487 ~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 487 DSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHC--CHHHHHH
T ss_pred HHHHhCCCcHHHHHH
Confidence 777766554
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.4e-11 Score=101.94 Aligned_cols=179 Identities=15% Similarity=0.049 Sum_probs=132.6
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhh------hhhHHHHHHHHHHcccChhHHhhhc-----CChHHHHHHHHHHHhcCC
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKV------LLEKDFYVCRSYLAQKKYKVVLEEK-----LPEELSCIKVLAEYLSIP 84 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~------~~e~~~~~~Raylalg~~~~~l~ei-----~~~~l~~~~~~A~~l~~~ 84 (265)
.-.+..|+|++|+..+++.....|+. .......+.++|..+|+++.++..+ ..|..........+-...
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHH
Confidence 56778999999999975544333322 1345566678899999998766543 111111111111110000
Q ss_pred CcC--cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 85 SKN--GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 85 ~~~--e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
... .....|...+....++.++...|+++.|.+.++++++.+|+++.+....+.+.+.. |++++|...|+++.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhC
Confidence 000 00234678899999999999999999999999999999999887766666665555 78999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS 196 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~ 196 (265)
|..+..+..+|.++..+|++++|...++++++.+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999875
No 47
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.32 E-value=6.2e-11 Score=88.85 Aligned_cols=119 Identities=10% Similarity=-0.083 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+...+.....+.++..+|+++.|.+.++++++.+|++.......+++.... +++++|...|+++....|.++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL--GNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--hchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 456788899999999999999999999999999999887666666665545 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
|.++..+|++++|...+.++++. ++.+..+++.++..+|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987 677889999999999875
No 48
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.32 E-value=1.5e-11 Score=98.40 Aligned_cols=119 Identities=12% Similarity=-0.006 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++....+.++.+|..+|+++.|.+.|+++++++|+++.+....+.+.... |++++|...|+++.+..|.++.+++.+
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE--ENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456677788999999999999999999999999999987666666665545 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHH-HHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 173 VAVLIAQDKYEEAWD-LLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 173 A~~~~~~g~~eEAe~-~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
|.++..+|++++|.. .+++|++. ||++......++...|++
T Consensus 106 a~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 106 AELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence 999999999988765 46899987 777877788888888864
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.31 E-value=1.2e-10 Score=98.32 Aligned_cols=180 Identities=9% Similarity=-0.035 Sum_probs=139.7
Q ss_pred HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhcCCCcCcc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
+..+..|+|.+|+..+++.....|+. ......+.++|...|+++.++..+ .+.....+..++..+...++.+.
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 55677899999999876554444433 234455678899999998666544 23334445555554443333221
Q ss_pred ---------c--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q psy3174 90 ---------S--NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL 158 (265)
Q Consensus 90 ---------~--~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el 158 (265)
. ..+...+....++.++..+|++++|.+.++++++.+|++..+....+.+.... |++++|...|+++
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE--REYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 2 45778899999999999999999999999999999999887766666665555 7899999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 159 IDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 159 ~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
....|.++..+..++.++..+|++++|..+++++++.+|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999988444
No 50
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.31 E-value=6.2e-11 Score=89.71 Aligned_cols=119 Identities=11% Similarity=-0.067 Sum_probs=104.8
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.+.+...+..++.++...|+++.|.+.++++++.+|++..+....+.+... .+++++|...|+++....|.++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--LLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 477889999999999999999999999999999999887655555555433 388999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
+|.++..+|++++|...++++++. +++...+++.++..+|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999988 45578899988888774
No 51
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.30 E-value=3e-11 Score=101.42 Aligned_cols=118 Identities=11% Similarity=0.018 Sum_probs=103.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHH----------------HHHHHHHhccccHHHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLC----------------SAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la----------------~a~v~l~~g~~~~~eA~~~~~e 157 (265)
.+.+.+...+.+++..|+++.|.+.|+++++.+|+++..... .+.+.... |++++|...|++
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~ 79 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN--RNYDKAYLFYKE 79 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 467888899999999999999999999999999998755444 44444434 789999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+....|.++..+..+|.+++.+|++++|...++++++. +++++.+++.++..+|..
T Consensus 80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999998 677999999999887753
No 52
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.30 E-value=1.5e-10 Score=85.94 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+.+.....+.++...|+++.|.+.++++++.+|++..+....+.+.... +++++|..+|+++....|.++..+..+|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 3678889999999999999999999999999998876655555554444 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
++..+|++++|...++++++. ++++..+++.+...+|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999987 6778899998887765
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.28 E-value=5.4e-11 Score=110.53 Aligned_cols=184 Identities=9% Similarity=-0.009 Sum_probs=130.9
Q ss_pred hccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccC-hhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHH
Q psy3174 21 LGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKK-YKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEIN 99 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~-~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~ 99 (265)
.|+|.+|+..++++-..+|+.. ..-.+...++..+|+ ++.++.. ++... ...|++.++.
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~-~a~~~~g~~l~~~g~d~~eAl~~--------~~~al-----------~l~P~~~~a~ 169 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANY-TVWHFRRVLLKSLQKDLHEEMNY--------ITAII-----------EEQPKNYQVW 169 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCCHHHHHHH--------HHHHH-----------HHCTTCHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCH-HHHHHHHHHHHHcccCHHHHHHH--------HHHHH-----------HHCCCCHHHH
Confidence 4778888888766555555532 223444556777886 7766552 11111 2346678888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA- 178 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~- 178 (265)
..++.++..+|++++|.+.|+++++++|++.-+....+|+.... |++++|+..|+++....|..+..++.+|.++..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~--g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF--KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888886655555554444 678888888888888888888888888888888
Q ss_pred cCCHHHH-----HHHHHHHhcC---CHHHHHHHHHHHHHcCC--CCccC---------CCChhhhcH
Q psy3174 179 QDKYEEA-----WDLLQDTAGD---SEDTLINNMVTAGRLGK--GNEMS---------VSPPFLFRS 226 (265)
Q Consensus 179 ~g~~eEA-----e~~l~~al~~---~pdtl~nl~~~~~~~Gk--~~ea~---------p~hp~~~~~ 226 (265)
.|++++| ...+.+++.+ ++..+.|++.++..+|. ..+++ |+++++...
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~ 314 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAF 314 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHH
Confidence 5555777 4788888887 55678888888888773 33322 777776553
No 54
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.27 E-value=6.4e-11 Score=117.29 Aligned_cols=172 Identities=13% Similarity=0.006 Sum_probs=135.1
Q ss_pred hhhccHHHHHHHHhhcc--------cCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCccc
Q psy3174 19 YYLGNYQQCIKEGQRLK--------ATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSS 90 (265)
Q Consensus 19 fy~G~Y~~~i~~~~~~~--------~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~ 90 (265)
+-.|+|++|++.+++.. ..+|+. .+..+...++|+.+|+++.++.. +.... .
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~--------~~~al-----------~ 461 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSES-VELPLMEVRALLDLGDVAKATRK--------LDDLA-----------E 461 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTC-SHHHHHHHHHHHHHTCHHHHHHH--------HHHHH-----------H
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccc-hhHHHHHHHHHHhcCCHHHHHHH--------HHHHh-----------c
Confidence 77899999998876554 344442 34456667889999999877762 11111 1
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.++.+.++.+|..+|++++|.+.|+++++.+|++.......+.+.... |++++ ...|+++....|.++..++
T Consensus 462 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~--g~~~~-~~~~~~al~~~P~~~~a~~ 538 (681)
T 2pzi_A 462 RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA--GNTDE-HKFYQTVWSTNDGVISAAF 538 (681)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH--TCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--CChHH-HHHHHHHHHhCCchHHHHH
Confidence 24678899999999999999999999999999999999987766666665555 77999 9999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDS---EDTLINNMVTAGRLGKG 213 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~---pdtl~nl~~~~~~~Gk~ 213 (265)
++|.++..+|++++|...++++++.+ ++...|++.++...|+.
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999984 45778898888776653
No 55
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=1.7e-10 Score=97.71 Aligned_cols=171 Identities=11% Similarity=0.071 Sum_probs=122.4
Q ss_pred chhHHH-HHhhhhccHHHHHHHHhhcccCChhh--hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCc
Q psy3174 10 DELFDV-RNSYYLGNYQQCIKEGQRLKATDPKV--LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSK 86 (265)
Q Consensus 10 delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~--~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~ 86 (265)
+.+|.. ...|-.|+|++|+..++++....|.. ..+..+.+..+|..+|+++.++... ..+... .+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~--------~~~l~~--~P-- 72 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAI--------DRFIRL--NP-- 72 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHH--------HHHHHH--CT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHHH--Cc--
Confidence 345654 67788999999999987766544433 3356677789999999999777632 111110 00
Q ss_pred CcccccCCCHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHccCCCcHHHHHH-------------
Q psy3174 87 NGSSNFGTHLEINALKIHTYLT------------------MYRNDLALKELKVMQDKDEDHTLTQLC------------- 135 (265)
Q Consensus 87 ~e~~~~~~~lE~~al~v~~~l~------------------~~r~d~Aek~l~~~~~~~~d~~l~~la------------- 135 (265)
+.+...++++.++.++.. +|+++.|.+.|+++++..|++..+..+
T Consensus 73 ----~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 73 ----THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp ----TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence 111122355555555554 689999999999999999998754322
Q ss_pred ----HHHHHHHhccccHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 136 ----SAWVHIANNVDKLNEAFYTLQDLIDKYGSTP---MLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 136 ----~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~---~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+.+.+ ..|++++|...|+++...+|+++ ..+..+|.|+..+|++++|...++++....|+
T Consensus 149 ~~~~~a~~~~--~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYT--ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHH--HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHH--HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 233333 33889999999999999999876 47899999999999999999999988776443
No 56
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.26 E-value=4.7e-12 Score=102.86 Aligned_cols=108 Identities=12% Similarity=-0.014 Sum_probs=92.8
Q ss_pred HcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3174 108 TMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWD 187 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~ 187 (265)
++.++-.+...++++++++|+++-.....+++.... |++++|...|+++....|.++..++++|.|+..+|+|++|..
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHH
Confidence 333344455668888889999987766666665545 889999999999999999999999999999999999999999
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 188 LLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 188 ~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.++++++. +|+.+.|++.|+..+|+.+++.
T Consensus 92 ~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~ 124 (151)
T 3gyz_A 92 LYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124 (151)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 99999998 7779999999999999988765
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.25 E-value=5.1e-11 Score=110.67 Aligned_cols=123 Identities=7% Similarity=-0.020 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDK-LNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~-~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
|+..+++..++.++..+|+++.|.+.++++++++|++..+....+.+.... |+ +++|+..|+++....|.++.+++.
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~--g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--QKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 444555555555555555555555555555555555553322222222222 43 555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+|+++..+|++++|...+++++++ +++++.|++.++..+|+..+++
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 555555555555555555555555 4445555555555555555443
No 58
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.25 E-value=1.1e-10 Score=103.63 Aligned_cols=105 Identities=17% Similarity=0.022 Sum_probs=85.8
Q ss_pred cCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 92 FGTHLEINALK--IHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 92 ~~~~lE~~al~--v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
.|++....... +.++...||+++|.+.|+++++..|+++......+.+.+.. |++++|...|+++....|+++..+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ--GRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHH
Confidence 36665433332 24444569999999999999999999987766666665555 789999999999999999999999
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHhcCCHH
Q psy3174 170 NAQVAVLIAQDKYEE-AWDLLQDTAGDSED 198 (265)
Q Consensus 170 n~~A~~~~~~g~~eE-Ae~~l~~al~~~pd 198 (265)
+++|.++..+|++++ |..+++++++.+|+
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999987 57899999988444
No 59
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=4.4e-10 Score=94.25 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=113.8
Q ss_pred cchhH-HHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHH----------------HHHHHHcccChhHHhhhcCChHH
Q psy3174 9 VDELF-DVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFY----------------VCRSYLAQKKYKVVLEEKLPEEL 71 (265)
Q Consensus 9 ~delf-~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~----------------~~Raylalg~~~~~l~ei~~~~l 71 (265)
++.++ .....+-.|+|.+|+..+++....+|++. +..++ +.++|..+|+++.++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~------ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT-EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF------ 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH-HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH------
Confidence 44544 34677888999999999876666666642 23344 56667777777665552
Q ss_pred HHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHH
Q psy3174 72 SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEA 151 (265)
Q Consensus 72 ~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA 151 (265)
+.... ...|++.+.+..++.+|..+|+++.|.+.|+++++++|+++-+....+++....|.....++
T Consensus 77 --~~~al-----------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 77 --YKELL-----------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp --HHHHH-----------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHH-----------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 11111 12466788888888888888888888888888888888887666666665555555566677
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 152 FYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 152 ~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
...|+.+....| ....+...|.++..+|+|++|...++++++.+|+
T Consensus 144 ~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 144 ETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 777777653222 1224556788888888888888888888888555
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=1.6e-10 Score=109.52 Aligned_cols=124 Identities=7% Similarity=-0.142 Sum_probs=105.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRN-DLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLV 169 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~-d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lL 169 (265)
..+...+..+.++.++..+|++ ++|.+.|+++++.+|++.-+....+.+.... |++++|...|+++.+..|+ +..+
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~-~~~~ 173 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK--GDVTSAHTCFSGALTHCKN-KVSL 173 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHTTCCC-HHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC-HHHH
Confidence 3457889999999999999999 9999999999999999876666666665555 7799999999999999888 6889
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc--------CCCCccC
Q psy3174 170 NAQVAVLIAQ---------DKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL--------GKGNEMS 217 (265)
Q Consensus 170 n~~A~~~~~~---------g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~--------Gk~~ea~ 217 (265)
..+|.++..+ |++++|...++++++. +++++.+++.++..+ |+..++.
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999999 9999999999999987 677889999999888 7766654
No 61
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=1.9e-10 Score=86.05 Aligned_cols=117 Identities=15% Similarity=0.003 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
+....++.++...|+++.|.+.++++++.+|++.......+.+.... +++++|...|+++....|.++..+..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHh--cCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 45677889999999999999999999999888876555555554444 7899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 177 IAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
..+|++++|...+.++++. ++.++.+++.++..+|+..+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence 9999999999999999886 67788899999998887543
No 62
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.23 E-value=1.3e-10 Score=92.99 Aligned_cols=102 Identities=12% Similarity=-0.133 Sum_probs=91.7
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++++.++.++.++...|++++|.+.|+++++.+|++.......+.+.... |++++|...|+++....|+++..+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM--GQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4678889999999999999999999999999999999986665555555444 78999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+|.|++.+|++++|...++++++.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999987
No 63
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.23 E-value=1.4e-10 Score=91.22 Aligned_cols=104 Identities=10% Similarity=-0.143 Sum_probs=93.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++++.++.++.++...|+++.|.+.|+++++.+|++.......+.+.... |++++|...|+++....|.++..+..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL--GLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4678889999999999999999999999999999999987666666665545 78999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 172 QVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 172 ~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
+|.|+..+|++++|...++++++.+|
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998733
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.22 E-value=2.4e-10 Score=93.75 Aligned_cols=132 Identities=10% Similarity=-0.001 Sum_probs=108.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHh--hcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLID--KYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~--~~p~t~~l 168 (265)
.|++.+....++.++..+|+++.|.+.+.++++.+|++..+....+.+.. .. |++++|...|+++.. ..|..+..
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 115 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC--GRLNRPAESMAYFDKALADPTYPTPYIA 115 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHTSTTCSCHHHH
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HhcCcHHHHHHHHHHHHcCcCCcchHHH
Confidence 47888899999999999999999999999999988888765555555543 44 679999999999988 55666778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------C-CChhhhc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------V-SPPFLFR 225 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p-~hp~~~~ 225 (265)
+..+|.++..+|++++|...+.++++. +++++.+++.++..+|+..++. | +++.+..
T Consensus 116 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (225)
T 2vq2_A 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 889999999999999999999999876 6778889999999999887765 7 7766543
No 65
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.22 E-value=1.7e-10 Score=92.43 Aligned_cols=112 Identities=5% Similarity=-0.129 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.+.+..++.++...|+++.|.+.|+++++.+|++.......+++.+.. +++++|...|+++....|..+..+..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS--GQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456788999999999999999999999999999999987766666665555 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVT 206 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~ 206 (265)
|.+++.+|++++|...++++++. +++.+.+.+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999988 55555544433
No 66
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.22 E-value=2.8e-10 Score=96.94 Aligned_cols=200 Identities=11% Similarity=-0.029 Sum_probs=140.0
Q ss_pred hHHH-HHhhhhccHHHHHHHHhhcccCC--hhhhhhHHHHHHHHHHcccChhHHhhhc------CChHHHHHHHHHHHhc
Q psy3174 12 LFDV-RNSYYLGNYQQCIKEGQRLKATD--PKVLLEKDFYVCRSYLAQKKYKVVLEEK------LPEELSCIKVLAEYLS 82 (265)
Q Consensus 12 lf~v-r~~fy~G~Y~~~i~~~~~~~~~~--~~~~~e~~~~~~Raylalg~~~~~l~ei------~~~~l~~~~~~A~~l~ 82 (265)
++.+ ...+..|+|++|+..+++..... ++........+.++|..+|+++.++..+ .+....++..++..+.
T Consensus 40 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 40 YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 4443 56778999999999976554422 2222333456688899999998776555 2333445556666555
Q ss_pred CCCcCcc---------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccc-cHHHHH
Q psy3174 83 IPSKNGS---------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVD-KLNEAF 152 (265)
Q Consensus 83 ~~~~~e~---------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~-~~~eA~ 152 (265)
..++.+. ...|.+......++.+....++++.|.+.++++++.+|++.......+.+....|.. ++++|.
T Consensus 120 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 4444322 345889999999994444556999999999999999999987777777776666432 288899
Q ss_pred HHHHHHHhhc---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 153 YTLQDLIDKY---GST-----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 153 ~~~~el~~~~---p~t-----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
..|+++.+.. |+. ...+..+|.++..+|++++|...++++++. +|...-.+..+....|
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999988765 442 257888999999999999999999999998 5555555555554443
No 67
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=7.4e-10 Score=81.50 Aligned_cols=111 Identities=12% Similarity=-0.043 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
..+.+...+.++...|+++.|.+.++++++.+|++.......+.+.... +++++|...++++....|.++..+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4677888999999999999999999999999998876666666665545 78999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q psy3174 175 VLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTA 207 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~ 207 (265)
++..+|++++|...++++++. ++++..+++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999998 566666666553
No 68
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.7e-10 Score=97.61 Aligned_cols=159 Identities=14% Similarity=0.050 Sum_probs=110.2
Q ss_pred HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHH
Q psy3174 24 YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKI 103 (265)
Q Consensus 24 Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v 103 (265)
|++|+..++++...++.........+..+|..+|+++.++.-+ -+++...-.... .+.+....+...++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~~~~~~-------~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLL----NDALAIREKTLG-------KDHPAVAATLNNLA 92 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHTC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHH----HHHHHHHHHHcC-------CcchHHHHHHHHHH
Confidence 4455555443333343334455666788899999998776621 011111111100 23356678899999
Q ss_pred HHHHHcCChHHHHHHHHHHHcc-----CC---CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------cCCCHH
Q psy3174 104 HTYLTMYRNDLALKELKVMQDK-----DE---DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK--------YGSTPM 167 (265)
Q Consensus 104 ~~~l~~~r~d~Aek~l~~~~~~-----~~---d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~--------~p~t~~ 167 (265)
.+|..+|+++.|.+.++++++. ++ +...+....+++.... |++++|...|+++... .|....
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ--GKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987 23 3333333344444333 8899999999999876 455667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+..+|.++..+|++++|...++++++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999975
No 69
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=1.5e-10 Score=94.15 Aligned_cols=149 Identities=15% Similarity=0.065 Sum_probs=118.0
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.+-..+.++..|+++.++..+ + +.....|++.+....++.++..+|++++|.+.++++++.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~--------~-----------~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVI--------Q-----------TLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH--------H-----------TSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHH--------H-----------HHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 344567778888877655521 1 001245788999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH-----HHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE-----DTL 200 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p-----dtl 200 (265)
+| ++......+++.+... ....+|...|+++....|+++..+..+|.++..+|++++|...++++++.+| ...
T Consensus 70 ~p-~~~~~~~~~~~~~~~~-~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~ 147 (176)
T 2r5s_A 70 YQ-DNSYKSLIAKLELHQQ-AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147 (176)
T ss_dssp GC-CHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred cC-ChHHHHHHHHHHHHhh-cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence 88 6544444455544322 2344689999999999999999999999999999999999999999999854 378
Q ss_pred HHHHHHHHHcCCCCc
Q psy3174 201 INNMVTAGRLGKGNE 215 (265)
Q Consensus 201 ~nl~~~~~~~Gk~~e 215 (265)
.+++.++..+|+.++
T Consensus 148 ~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 148 KTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHhCCCCc
Confidence 899999999999765
No 70
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.7e-10 Score=87.00 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
...+.+...+.++...|+++.|.+.|+++++.+|++.......+.+.+.. |++++|...|+++....|..+..+..+|
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 45678888999999999999999999999999999886665555555545 7899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCC
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGDS 196 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~~ 196 (265)
.+++.+|++++|...++++++.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.1e-10 Score=100.67 Aligned_cols=171 Identities=15% Similarity=0.064 Sum_probs=119.6
Q ss_pred hHHH-HHhhhhccHHHHHHHHhhcccC-------ChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC
Q psy3174 12 LFDV-RNSYYLGNYQQCIKEGQRLKAT-------DPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI 83 (265)
Q Consensus 12 lf~v-r~~fy~G~Y~~~i~~~~~~~~~-------~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~ 83 (265)
++.+ ...+..|+|.+|+..+++.... ++.........+.++|..+|+++.++..+ -+++...-....
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~----~~al~~~~~~~~- 104 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL----NDALAIREKTLG- 104 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH----HHHHHHHHHHhC-
Confidence 4444 5667789999999987554431 23334445566678899999998776621 111111111110
Q ss_pred CCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-----CCc---HHHHHHHHHHHHHhccccHHHHHHHH
Q psy3174 84 PSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD-----EDH---TLTQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 84 ~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-----~d~---~l~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
...+....+...++.+|..+|+++.|.+.++++++.. +++ ..+....+.+.. ..|++++|..+|
T Consensus 105 ------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~ 176 (311)
T 3nf1_A 105 ------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ--NQGKYEEVEYYY 176 (311)
T ss_dssp ------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHH
T ss_pred ------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--HcCCHHHHHHHH
Confidence 2234567888999999999999999999999999863 333 222233333333 348899999999
Q ss_pred HHHHhh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 156 QDLIDK--------YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 156 ~el~~~--------~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+++... .|.....++.+|.++..+|++++|...++++++.
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998776 4556668999999999999999999999999974
No 72
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.20 E-value=1.2e-09 Score=94.03 Aligned_cols=205 Identities=12% Similarity=-0.016 Sum_probs=145.3
Q ss_pred CCcchhHHH-HHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHc----ccChhHHhhhc----CChHHHHHHHH
Q psy3174 7 NEVDELFDV-RNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLA----QKKYKVVLEEK----LPEELSCIKVL 77 (265)
Q Consensus 7 ~~~delf~v-r~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Rayla----lg~~~~~l~ei----~~~~l~~~~~~ 77 (265)
++++.++.+ ...+..|+|.+|+..+++.....+ ......+.++|.. .++++.++.-+ ......+...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345556666 455667999999999755443222 1345666788888 89988666544 11123344445
Q ss_pred HHHhcC----CCcCcc-------cccCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q psy3174 78 AEYLSI----PSKNGS-------SNFGTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA 142 (265)
Q Consensus 78 A~~l~~----~~~~e~-------~~~~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~ 142 (265)
+..+.. .++.+. .-..++.++...++.+|.. .+++++|.+.|+++.+.++......++..+..-.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGR 160 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCC
Confidence 544433 222211 0114688999999999999 9999999999999999886555555555444211
Q ss_pred hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH----cCCC
Q psy3174 143 NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR----LGKG 213 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~----~Gk~ 213 (265)
...+++++|+..|++..+. ..+..+..+|.++.. ++++++|...++++++. +++...+++.++.. .|+.
T Consensus 161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCS
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCH
Confidence 1148899999999999877 356788899999999 99999999999999998 88899999999988 6666
Q ss_pred Ccc
Q psy3174 214 NEM 216 (265)
Q Consensus 214 ~ea 216 (265)
.++
T Consensus 239 ~~A 241 (273)
T 1ouv_A 239 KQA 241 (273)
T ss_dssp TTH
T ss_pred HHH
Confidence 554
No 73
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.18 E-value=5.1e-10 Score=85.88 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.+.+...+.++...|+++.|.+.|+++++.+|+++......+.+.+.. +++++|...|+++....|.++..+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 567899999999999999999999999999999999886666666665555 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
|.++..+|++++|...++++++.+|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999988554
No 74
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.17 E-value=3.6e-10 Score=84.79 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC-------H
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST-------P 166 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t-------~ 166 (265)
+..+....++.++...|+++.|.+.++++++.+|++.......+.+.... +++++|...|+++....|.+ +
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 34677888999999999999999999999999999887666666665545 78999999999999887765 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk 212 (265)
.++..+|.++..+|++++|...++++++. +|++...+..+...+++
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999987 77788888877776654
No 75
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.1e-09 Score=84.35 Aligned_cols=115 Identities=12% Similarity=-0.036 Sum_probs=97.5
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
..+.+.+.+...+.++...|+++.|.+.|+++++.+|++ .......+.+.... +++++|...|+++....|.++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL--EDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTSCCHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCccCHH
Confidence 347889999999999999999999999999999999987 43333334443333 7899999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTA 207 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~ 207 (265)
.+..+|.++..+|++++|...++++++. ++++..++..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999987 566666665554
No 76
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.16 E-value=4.2e-10 Score=86.94 Aligned_cols=100 Identities=11% Similarity=-0.051 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
+..+..+.+++..|+++.|.+.++++++.+|++.......+.+.... |++++|...|+++....|+.+..+..+|.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44677888999999999999999999999999986666666655544 7899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhcCCHH
Q psy3174 177 IAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~~pd 198 (265)
..+|++++|...++++++.+|+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999998775
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=8.2e-10 Score=97.48 Aligned_cols=123 Identities=19% Similarity=0.144 Sum_probs=105.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.+....++.+|+.+||+++|.+.++++.+.+|+.....+..+.. +. ..++..+|...|+++....|+++.++.
T Consensus 146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~-l~-~~~~~~~a~~~l~~al~~~P~~~~~~~ 223 (287)
T 3qou_A 146 LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE-LL-XQAADTPEIQQLQQQVAENPEDAALAT 223 (287)
T ss_dssp HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH-HH-HHHTSCHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH-HH-hhcccCccHHHHHHHHhcCCccHHHHH
Confidence 3477899999999999999999999999999999999776544443333 22 235688899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDS-----EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~-----pdtl~nl~~~~~~~Gk~~e 215 (265)
.+|.+++++|++++|...+.+++..+ ++...+++.++..+|+..+
T Consensus 224 ~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 224 QLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999973 5578999999999998764
No 78
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=8.1e-10 Score=93.46 Aligned_cols=155 Identities=10% Similarity=0.084 Sum_probs=116.3
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.+...+.++..|+++.++.. +..+... .+ ..+...+..+.++.+|..+|+++.|.+.|+++++.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~--------~~~~~~~--~p------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQ--------LEALDNR--YP------FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHH--------HHHHHHH--CT------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH--------HHHHHHh--CC------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34456788999999877662 2222110 01 11234578999999999999999999999999999
Q ss_pred CCCcHH-----HHHHHHHHHHH--------------hccccHHHHHHHHHHHHhhcCCCHHHH-----------------
Q psy3174 126 DEDHTL-----TQLCSAWVHIA--------------NNVDKLNEAFYTLQDLIDKYGSTPMLV----------------- 169 (265)
Q Consensus 126 ~~d~~l-----~~la~a~v~l~--------------~g~~~~~eA~~~~~el~~~~p~t~~lL----------------- 169 (265)
.|++.. ..++.++..+. ...+++++|...|+++...+|+++...
T Consensus 71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 998854 33343333211 124789999999999999999876443
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCC---H---HHHHHHHHHHHHcCCCCcc
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGDS---E---DTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~~---p---dtl~nl~~~~~~~Gk~~ea 216 (265)
..+|.+++.+|+|++|...++++++.+ | +++.+++.++..+|+..++
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 467889999999999999999999873 3 5789999999999987653
No 79
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.13 E-value=1.2e-10 Score=93.17 Aligned_cols=109 Identities=12% Similarity=0.009 Sum_probs=94.4
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 116 LKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 116 ek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+.|+++++++|+++-.....+.+.+.. |++++|...|+++....|.++..++++|.|+..+|+|++|...+++++..
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQS--GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHc--CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4568889999998886666666665545 78999999999999999999999999999999999999999999999987
Q ss_pred ---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 196 ---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 196 ---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+|+++.+++.++..+|+..++. |++|.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 7779999999999999988765 887766444
No 80
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.13 E-value=1.4e-09 Score=82.48 Aligned_cols=113 Identities=12% Similarity=-0.057 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVN 170 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn 170 (265)
+.++..+.++...|+++.|.+.|+++++.+|++. -.....+.+.... |++++|...|+++...+|++ +..+.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT--RNFQLAEAQFRDLVSRYPTHDKAAGGLL 80 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence 4567789999999999999999999999988877 3444444444444 78999999999999999988 78899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcC
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLG 211 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~G 211 (265)
.+|.+++.+|++++|...++++++.+|+ +......+....+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999988444 4444444444443
No 81
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.13 E-value=7.3e-10 Score=87.08 Aligned_cols=118 Identities=9% Similarity=-0.039 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQV 173 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A 173 (265)
...+.+...+.++...|+++.|.+.|+++++.+|++..+....+.+.... +++++|...|+++....|.++..+..+|
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34677888999999999999999999999999999876666666665544 7899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHH--HHHcCCC
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVT--AGRLGKG 213 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~--~~~~Gk~ 213 (265)
.++..+|++++|...+.++++. ++++..++..+ ....|+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 56666555544 4444543
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=2.4e-10 Score=113.12 Aligned_cols=148 Identities=9% Similarity=0.033 Sum_probs=126.1
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.+....++.+|..+|++++|.+.|+++++.+|++.......+.+.+.. |++++|...|+++....|+.+..++
T Consensus 428 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~ 505 (681)
T 2pzi_A 428 DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT--GDYDSATKHFTEVLDTFPGELAPKL 505 (681)
T ss_dssp CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 34889999999999999999999999999999999999986665555555545 7899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcHHHH--------
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRSDET-------- 229 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~~~-------- 229 (265)
++|.++.++|+|++ ...++++++. +++.+.|++.++..+|+.+++. |+++.+......
T Consensus 506 ~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 506 ALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999999 9999999987 6678999999999999987764 777655433221
Q ss_pred ----HHHHHHHHhhcc
Q psy3174 230 ----TATLDACGLQSN 241 (265)
Q Consensus 230 ----~~~FD~~~~~~~ 241 (265)
...|+++...+.
T Consensus 585 ~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 585 SEVTEEQIRDAARRVE 600 (681)
T ss_dssp --CCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 366777777664
No 83
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.11 E-value=4.6e-10 Score=82.07 Aligned_cols=103 Identities=12% Similarity=-0.064 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TPMLVN 170 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~~lLn 170 (265)
|++.+....++.++..+|+++.|.+.++++++.+|++.......+.+.... +++++|...|+++....|. .+.++.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--ERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 567788888999999999999999999999999998876655555555444 7899999999999999999 999999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHhcCCH
Q psy3174 171 AQVAVLIAQ-DKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 171 ~~A~~~~~~-g~~eEAe~~l~~al~~~p 197 (265)
.+|.++..+ |++++|...+.+++..+|
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999999 999999999999998744
No 84
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.11 E-value=4.8e-10 Score=100.17 Aligned_cols=122 Identities=8% Similarity=-0.134 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---HH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC--
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---TL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST-- 165 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t-- 165 (265)
....+...++.+|..+|+++.|.+.+++++++.++. .. +....+.+.. ..|++++|...|++.....|..
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI--FLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHhCcC
Confidence 344567777888888888888888888887753321 10 1222222222 2377888888888877655533
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C----HHHHHHHHHHHHHcCCCCccC
Q psy3174 166 ----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----S----EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 166 ----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~----pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
...++.+|.++..+|++++|...++++++. + +.++.+++.++..+|+..++.
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 557788888888888888888888888876 1 446778888888888876654
No 85
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.10 E-value=3.4e-10 Score=89.01 Aligned_cols=108 Identities=14% Similarity=-0.005 Sum_probs=90.7
Q ss_pred HHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-
Q psy3174 117 KELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD- 195 (265)
Q Consensus 117 k~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~- 195 (265)
..|+++++++|++.-.....+...+.. |++++|...|+++....|.++..+..+|.|+..+|++++|...+++++..
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQA--GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 567788888888876666666665545 78999999999999999999999999999999999999999999999988
Q ss_pred --CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 196 --SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 196 --~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+|+++.+++.++..+|+..++. |++|.....
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 7779999999999999988764 887765554
No 86
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.09 E-value=4.9e-10 Score=101.47 Aligned_cols=121 Identities=13% Similarity=0.044 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---------------TLTQLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---------------~l~~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
+...+.+..++.+|..+|+++.|.+.|+++++++|++ ..+....+.+.+.. +++++|...|++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~~~ 221 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL--QAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 5677889999999999999999999999999999887 33333334443334 789999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
+....|..+..++.+|.+++.+|++++|...++++++. +++++.+++.++..+|+..+
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 67789999999999997543
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.09 E-value=1.3e-09 Score=104.49 Aligned_cols=124 Identities=12% Similarity=-0.071 Sum_probs=107.6
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
..|++.+....++.++..+|++++|.+.|+++++.+|++.-+....+.+.... |++++|...|+++.+..|.++..++
T Consensus 18 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~ 95 (568)
T 2vsy_A 18 HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ--QRHAEAAVLLQQASDAAPEHPGIAL 95 (568)
T ss_dssp ---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34778899999999999999999999999999999999887666666665555 7899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc---CCCCcc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL---GKGNEM 216 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~---Gk~~ea 216 (265)
.+|.++..+|++++|...++++++. +++++.+++.++..+ |+.+++
T Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 9999999999999999999999987 677899999999999 665544
No 88
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.08 E-value=3.7e-10 Score=97.32 Aligned_cols=199 Identities=10% Similarity=-0.065 Sum_probs=104.0
Q ss_pred HHhhhhccHHHHHHHHhh---cccCChhhhhhHHHHHHHHHHcccChhHHhhhc----------C-ChH-HHHHHHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQR---LKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK----------L-PEE-LSCIKVLAEY 80 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~---~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei----------~-~~~-l~~~~~~A~~ 80 (265)
+..+..|+|.+|+..+++ ..+.++.........+.++|..+|+++.++.-+ . ++. ..+...++..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 555666777776666432 234566555555666666666666665444332 1 111 2233444444
Q ss_pred hcCCCcCcc---------------cccCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHcc
Q psy3174 81 LSIPSKNGS---------------SNFGTHLEINALKIHTYLTMYR--------------------NDLALKELKVMQDK 125 (265)
Q Consensus 81 l~~~~~~e~---------------~~~~~~lE~~al~v~~~l~~~r--------------------~d~Aek~l~~~~~~ 125 (265)
+...++.+. +..+....+...++.++..+|+ ++.|.+.+++++++
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 433333211 0111123355666667777777 66666666666553
Q ss_pred ----CCC--cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC---C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3174 126 ----DED--HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG---S---TPMLVNAQVAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 126 ----~~d--~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p---~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al 193 (265)
++. ...+....+++.+.. |++++|...|++.....+ + ....+..+|.++..+|++++|..++++++
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLL--GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 111222223333323 567777777766654433 1 12256666777777777777777777666
Q ss_pred cC---C------HHHHHHHHHHHHHcCCCCcc
Q psy3174 194 GD---S------EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 194 ~~---~------pdtl~nl~~~~~~~Gk~~ea 216 (265)
+. . +.++.+++.++..+|+..++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 54 1 33556666677777766554
No 89
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.07 E-value=3.6e-10 Score=102.13 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=26.6
Q ss_pred HHhhhhccHHHHHHHHhh---cccCChhhhhhHHHHHHHHHHcccChhHHh
Q psy3174 16 RNSYYLGNYQQCIKEGQR---LKATDPKVLLEKDFYVCRSYLAQKKYKVVL 63 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~---~~~~~~~~~~e~~~~~~Raylalg~~~~~l 63 (265)
...+..|+|.+|+..+++ +.+.++.........+.++|..+|+++.++
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 106 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 555556666666665422 234555544445555666666666665443
No 90
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.07 E-value=4.9e-09 Score=94.85 Aligned_cols=184 Identities=13% Similarity=0.003 Sum_probs=127.6
Q ss_pred HHHhhhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
-...+..|+|.+|+..+++... .++.........+..+|..+|+++.++.-. -+.+..+-...
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~-------~~al~~~~~~~----- 177 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA-------RQAYEIYKEHE----- 177 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-------HHHHHHHHTCS-----
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHhCc-----
Confidence 3456678999999998654432 222224445556678899999998777621 11122221111
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC---CcHH---HHHHHHHHHHHhccccHHHHHHHHHHHHh---
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE---DHTL---TQLCSAWVHIANNVDKLNEAFYTLQDLID--- 160 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~---d~~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~--- 160 (265)
+..+....+...++.+|..+|+++.|.+.+++++++.+ +... +....|++.. ..|++++|...|++..+
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN--SQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHH
Confidence 11234567888899999999999999999999988633 2211 1222233333 33889999999999987
Q ss_pred --hc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHH---HHHHHHHHHHcCC
Q psy3174 161 --KY-GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDT---LINNMVTAGRLGK 212 (265)
Q Consensus 161 --~~-p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdt---l~nl~~~~~~~Gk 212 (265)
.. |..+.+++.+|.++..+|++++|...++++++. +|.. +.+++.++...|+
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 44 556778999999999999999999999999987 5553 4567777777776
No 91
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.07 E-value=1e-09 Score=90.43 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-------cHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhh-----
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDED-------HTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDK----- 161 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d-------~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~----- 161 (265)
+.+...+.++...||+++|.+.|+++++++|+ +..-..+.+|.|++ ..-|++++|...|++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 45667788999999999999999999999998 55434455677666 3348999999999999999
Q ss_pred --cCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 162 --YGSTPMLV----NAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 162 --~p~t~~lL----n~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.|+....+ +++|+++..+|+++||...++++++++|+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999 99999999999999999999999998655
No 92
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.06 E-value=9e-10 Score=98.39 Aligned_cols=202 Identities=10% Similarity=-0.084 Sum_probs=138.2
Q ss_pred HHHHhhhhccHHHHHHHHhhccc---CChhhhhhHHHHHHHHHHcccChhHHhhhc-----------CChH-HHHHHHHH
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKA---TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----------LPEE-LSCIKVLA 78 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~---~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----------~~~~-l~~~~~~A 78 (265)
.-...+..|+|.+|+..+++... .++.........+.++|..+|+++.++.-+ .+|. ..+...++
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34677888999999999755443 333323344556678899999998665433 1222 33455566
Q ss_pred HHhcCCCcCcc---------------cccCCCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q psy3174 79 EYLSIPSKNGS---------------SNFGTHLEINALKIHTYLTMYR--------------------NDLALKELKVMQ 123 (265)
Q Consensus 79 ~~l~~~~~~e~---------------~~~~~~lE~~al~v~~~l~~~r--------------------~d~Aek~l~~~~ 123 (265)
..+...++.+. +..+....+...++.+|..+|+ ++.|.+.+++++
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55554443322 1112235578888999999999 999999999887
Q ss_pred ccC---CCc---HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 124 DKD---EDH---TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST------PMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 124 ~~~---~d~---~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t------~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
++. ++. ..+....+.+.... |++++|...|++.....|.. ...++.+|.++..+|++++|..++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLL--GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 741 122 11222223333333 78999999999987665422 23789999999999999999999999
Q ss_pred HhcC---C------HHHHHHHHHHHHHcCCCCccC
Q psy3174 192 TAGD---S------EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 192 al~~---~------pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+++. . +.++.+++.++..+|+..++.
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9976 2 457789999999999987764
No 93
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.06 E-value=6.8e-10 Score=84.38 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=83.7
Q ss_pred HcCChHHHHHHHHHHHcc---CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH
Q psy3174 108 TMYRNDLALKELKVMQDK---DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE 184 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~~---~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eE 184 (265)
.+|++++|.+.|+++++. +|++..+....+.+.... |++++|...|+++.+.+|+++.++..+|.|++.+|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 478999999999999999 577666555556665545 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 185 AWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 185 Ae~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
|...++++++. +|++......+....+..+
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999987 7777666555655555543
No 94
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.06 E-value=1.2e-09 Score=92.59 Aligned_cols=121 Identities=9% Similarity=-0.053 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.+.+..++.++..+|+++.|.+.++++++.+|++..+....+.+.... |++++|...|+++....|..+..+..+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 456777888888888888888888888888888888776655555555444 678888888888888888877888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCcc
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea 216 (265)
|.+++.+|++++|...++++++.+|+ ...... +....|+..++
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A 163 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQA 163 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHH
Confidence 88888888888888888888876333 333222 33445555443
No 95
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.05 E-value=4.6e-10 Score=96.70 Aligned_cols=198 Identities=8% Similarity=-0.062 Sum_probs=134.9
Q ss_pred HHhhhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhc----------CChH--HHHHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK----------LPEE--LSCIKVLA 78 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei----------~~~~--l~~~~~~A 78 (265)
...+..|+|.+|+..+++... .++.........+.++|..+|+++.++..+ ..+. ..+...++
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 130 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 556778999999998644321 223334455566678899999998665443 1121 22344455
Q ss_pred HHhcCCCc--------------------Ccc---------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 79 EYLSIPSK--------------------NGS---------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 79 ~~l~~~~~--------------------~e~---------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
..+...++ .+. +..+....+...++.++..+|+++.|.+.+++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44432222 110 1123445678888999999999999999999998
Q ss_pred ccCCCc---HH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 124 DKDEDH---TL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST------PMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 124 ~~~~d~---~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t------~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
+..+.. .. +....+++.. ..|++++|..+|++.....+.. ...+..+|.++..+|++++|...+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYI--FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 864321 11 1222233333 3378999999999988765533 56889999999999999999999999
Q ss_pred HhcCCHH---------HHHHHHHHHHHcCCCCc
Q psy3174 192 TAGDSED---------TLINNMVTAGRLGKGNE 215 (265)
Q Consensus 192 al~~~pd---------tl~nl~~~~~~~Gk~~e 215 (265)
+++..+. ++.+++.++..+|+..+
T Consensus 289 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 289 HLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9999433 66789999999998654
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=9.7e-10 Score=97.01 Aligned_cols=123 Identities=15% Similarity=0.014 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|++.+....++..++..|+++.|+..|+++++.+|++.-.....+.+.+.. |++++|...|+++....|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~--g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL--NRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC--CCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 788899999999999999999999999999999999987766666665555 789999999999999999766677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+..+..+|+.++|...++++++. +++...+++.++..+|+.+++.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 88899999999999999999988 6779999999999999998765
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=3e-09 Score=93.66 Aligned_cols=123 Identities=8% Similarity=-0.049 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-HHHHHHHHHHHHH---hcc-ccHHHHHHHHHHHHhhcCCC----
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH-TLTQLCSAWVHIA---NNV-DKLNEAFYTLQDLIDKYGST---- 165 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-~l~~la~a~v~l~---~g~-~~~~eA~~~~~el~~~~p~t---- 165 (265)
...++..++.+|..+|++++|...|++++++.++. -....+.+|.+++ ... |++++|...|++..+.+|..
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 34566667778888888888888888777754321 0001122222222 222 66888888888877666532
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---HH-------HHHHHHHHHHHcCCCCccC
Q psy3174 166 --PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS---ED-------TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 166 --~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~---pd-------tl~nl~~~~~~~Gk~~ea~ 217 (265)
...++.+|.++..+|+|++|..+++++++.+ +. ++.+++.|+..+|+..++.
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3457777888888888888888888887762 21 4567777777777766543
No 98
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.04 E-value=3.1e-09 Score=87.67 Aligned_cols=121 Identities=11% Similarity=-0.089 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH----------------HHHHHHHHHHHHhccccHHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT----------------LTQLCSAWVHIANNVDKLNEAFYTLQ 156 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~----------------l~~la~a~v~l~~g~~~~~eA~~~~~ 156 (265)
+...+.+...+.++...|+++.|.+.|+++++..|++. .+....+.+.+ ..+++++|...|+
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN--KNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHH
Confidence 45667788899999999999999999999999877654 22222233333 3378999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 157 DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 157 el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
++....|..+..+..+|.+++.+|++++|...++++++. ++++..+++.+...+|+..+
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 67788899999988886543
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=3.5e-09 Score=89.43 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=115.3
Q ss_pred HHhhhhccHHHHHHHHhhccc-------CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA-------TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~-------~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e 88 (265)
...+..|+|.+|+..+++... .++.........+.++|..+|+++.++.-+ .+++...-....
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~~~~~~------ 120 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC----KRALEIREKVLG------ 120 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH----HHHHHHHHHHHC------
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHH----HHHHHHHHHHcC------
Confidence 556779999999988654432 122233444555678899999998776621 111111111110
Q ss_pred ccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc--------CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 89 SSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK--------DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 89 ~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--------~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
...+....+...++.+|..+|+++.|.+.+++++++ .++...+....+.+.... |++++|...|+++..
T Consensus 121 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 121 -KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ--GKYQDAETLYKEILT 197 (283)
T ss_dssp -TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 123556788889999999999999999999999887 343344444445554444 789999999999875
Q ss_pred h-------------------------------------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 161 K-------------------------------------------------YGSTPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 161 ~-------------------------------------------------~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
. +|..+..+..+|.++..+|++++|..++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 198 RAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 234455788899999999999999999999
Q ss_pred HhcC
Q psy3174 192 TAGD 195 (265)
Q Consensus 192 al~~ 195 (265)
+++.
T Consensus 278 al~~ 281 (283)
T 3edt_B 278 ASRN 281 (283)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8864
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1e-09 Score=85.43 Aligned_cols=103 Identities=8% Similarity=-0.036 Sum_probs=83.7
Q ss_pred HccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHH
Q psy3174 123 QDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDT 199 (265)
Q Consensus 123 ~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdt 199 (265)
..++|+......-.+...+ ..|++++|...|+++.+..|.++.++.++|.|++.+|++++|...+.++++. +++.
T Consensus 6 a~inP~~a~~~~~~G~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYF--KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHCHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 3456665433332333333 3388999999999999999999999999999999999999999999999998 6779
Q ss_pred HHHHHHHHHHcCCCCccC----------CCChhhhcHH
Q psy3174 200 LINNMVTAGRLGKGNEMS----------VSPPFLFRSD 227 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ea~----------p~hp~~~~~~ 227 (265)
+.+++.++..+|+..++. |+++.+....
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 999999999999988765 8888766543
No 101
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.04 E-value=3.4e-10 Score=102.30 Aligned_cols=200 Identities=8% Similarity=-0.018 Sum_probs=133.3
Q ss_pred HHhhhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhc-----------CChH-HHHHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-----------LPEE-LSCIKVLA 78 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei-----------~~~~-l~~~~~~A 78 (265)
...+..|+|.+|+..+++... .++.........+..+|..+|+++.++..+ .++. ..+...++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 94 NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 556778999999998644322 222334455566678899999998665443 1222 22344455
Q ss_pred HHhcCCCc-----------------Ccc---------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 79 EYLSIPSK-----------------NGS---------------SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 79 ~~l~~~~~-----------------~e~---------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
..+...++ .+. +..+........++.+|..+|++++|.+.+++++++.
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 44433333 111 1123445577888899999999999999999998865
Q ss_pred CCc---HH---HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 127 EDH---TL---TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST------PMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 127 ~d~---~l---~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t------~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
++. .. +....+.+.+ ..|++++|...|+++....+.. ..++..+|.++..+|++++|..+++++++
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHI--FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHH--HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 432 10 1122222222 3478999999999987765532 55788899999999999999999999999
Q ss_pred C-----C----HHHHHHHHHHHHHcCCCCccC
Q psy3174 195 D-----S----EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 195 ~-----~----pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
. + +.++.+++.++..+|+..++.
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9 1 337788999999999877655
No 102
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=9.9e-10 Score=96.76 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
|.+.+.+...+.++...|+++.|.+.|+++++.+|++.......+.+.+.. |++++|...|+++.+..|.++.+++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 457788999999999999999999999999999999886665555555544 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
|.++..+|++++|...++++++.+|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999998554
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.03 E-value=4.5e-09 Score=100.75 Aligned_cols=155 Identities=10% Similarity=-0.049 Sum_probs=111.2
Q ss_pred hccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHH
Q psy3174 21 LGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINA 100 (265)
Q Consensus 21 ~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~a 100 (265)
.|+|.+|+..+++....+|+. ......+.++|..+|+++.++.. +-..+. ..|++.+...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~-----------~~~al~--------~~p~~~~~~~ 61 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-FVAWLMLADAELGMGDTTAGEMA-----------VQRGLA--------LHPGHPEAVA 61 (568)
T ss_dssp -------------------CC-HHHHHHHHHHHHHHTCHHHHHHH-----------HHHHHT--------TSTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH-----------HHHHHH--------hCCCCHHHHH
Confidence 588999998876655555543 23345557889999999876652 111111 2356789999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc-
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ- 179 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~- 179 (265)
.++.+|..+|++++|.+.|+++++.+|++.......+.+.... |++++|...|+++.+..|.++..+..+|.++..+
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA--GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999986666666665545 7899999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHhcCCH
Q psy3174 180 --DKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 180 --g~~eEAe~~l~~al~~~p 197 (265)
|++++|...++++++.+|
T Consensus 140 ~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHhcCC
Confidence 999999999999998743
No 104
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.03 E-value=3.2e-09 Score=85.54 Aligned_cols=105 Identities=12% Similarity=-0.020 Sum_probs=92.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHH-HHHhccccH--HHHHHHHHHHHhhcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWV-HIANNVDKL--NEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v-~l~~g~~~~--~eA~~~~~el~~~~p~t~~l 168 (265)
.|++.+....++.+|..+|+++.|.+.|+++++.+|+++......+.+ .... +++ ++|...|+++....|.++..
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~--~~~~~~~A~~~~~~al~~~p~~~~~ 117 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA--SQHMTAQTRAMIDKALALDSNEITA 117 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhCCCcHHH
Confidence 477889999999999999999999999999999999887665555555 3333 677 99999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
+..+|.++..+|++++|...+.++++.+|+
T Consensus 118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 118 LMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999998443
No 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=4.9e-09 Score=92.32 Aligned_cols=164 Identities=7% Similarity=-0.057 Sum_probs=108.2
Q ss_pred hhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCC
Q psy3174 20 YLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGT 94 (265)
Q Consensus 20 y~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~ 94 (265)
..|+|.+|+..+++... .++........-+..+|..+|+++.++.-. -+++.+.- . .++...
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~----~~Al~l~~---~------~g~~~~ 115 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL----ENAIQIFT---H------RGQFRR 115 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHH---H------TTCHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH----HHHHHHHH---H------cCCHHH
Confidence 47888888877543321 222222333444567788888888766521 11121111 0 122233
Q ss_pred CHHHHHHHHHHHHHc-CChHHHHHHHHHHHccCCCc--H----HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 95 HLEINALKIHTYLTM-YRNDLALKELKVMQDKDEDH--T----LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 95 ~lE~~al~v~~~l~~-~r~d~Aek~l~~~~~~~~d~--~----l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
...++..++.+|..+ |+++.|.+.|++++++.|+. . -+....+.+.+ ..|++++|...|+++....|.++.
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA--LDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHhcCCc
Confidence 356777889999996 99999999999999986532 1 11122233322 348899999999999998885432
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 168 -------LVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 168 -------lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.++++|.|+..+|++++|...++++++.+|+
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6789999999999999999999999998665
No 106
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.03 E-value=2e-09 Score=83.68 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC-------HHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST-------PMLV 169 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t-------~~lL 169 (265)
...-.++.++...|++++|.+.|+++++++|+++.+....|.+.+.. |++++|...|++..+..|.. ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE--KKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh--hhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34456788999999999999999999999999986655555554444 78999999999998776632 2478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNM 204 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~ 204 (265)
..+|.++..+|+|++|...++++++. +|+++..+-
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 89999999999999999999999986 788775543
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=5.1e-09 Score=78.11 Aligned_cols=103 Identities=13% Similarity=-0.019 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+++......++.++...|+++.|.+.++++.+.+|++.......+.+.... +++++|...|+++....|..+..+..+
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l 109 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNL 109 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 456788888999999999999999999999999998876655555554434 789999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 173 VAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 173 A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
|.++..+|++++|...+.++++.+|
T Consensus 110 a~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 110 GNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccHHHHHHHHHHHHccCC
Confidence 9999999999999999999987654
No 108
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.99 E-value=2.4e-08 Score=91.93 Aligned_cols=155 Identities=8% Similarity=-0.003 Sum_probs=86.3
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK--- 125 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--- 125 (265)
+..+|..+|+++.+++-. -+++.+.-. .. .....+..+.....++.+|..+|++++|.+.+++++++
T Consensus 57 Lg~~~~~~G~~~eAl~~~----~kAl~~~~~---~~---~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECL----RKAEELIQQ---EH---ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHHHTTCHHHHHHHH----HHHHHHHHH---HS---GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH----HHHHHHHHh---cC---ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 467788899998777632 011111100 00 00223455566666666777777777777777666653
Q ss_pred -----CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHhcC--
Q psy3174 126 -----DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA---QDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 126 -----~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~---~g~~eEAe~~l~~al~~-- 195 (265)
.++...+..-.+|..+..|++++++|...|+++.+..|+.+..+.+++.++.. .|++++|...++++++.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 12233333333444444455667777777777777777666666666666443 35556666666666665
Q ss_pred -CHHHHHHHHHHHHHcCCC
Q psy3174 196 -SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 196 -~pdtl~nl~~~~~~~Gk~ 213 (265)
++.+..+++.+...+++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREE 225 (472)
T ss_dssp SCHHHHHHHHHHHHHCC--
T ss_pred cchHHHHHHHHHHHHHHhh
Confidence 444556666555555443
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=7.2e-09 Score=85.31 Aligned_cols=115 Identities=12% Similarity=0.011 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
..+..+.++...|+++.|.+.|++++ ++ +..+....+++.... |++++|...|+++....|..+..++.+|.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTIL--KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 35677889999999999999999995 33 443333344444434 78999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhcC---CH----------------HHHHHHHHHHHHcCCCCccC
Q psy3174 178 AQDKYEEAWDLLQDTAGD---SE----------------DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~---~p----------------dtl~nl~~~~~~~Gk~~ea~ 217 (265)
.+|++++|...++++++. ++ +++.+++.++..+|+..++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999996 33 78899999999999987754
No 110
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.96 E-value=4.5e-09 Score=95.13 Aligned_cols=156 Identities=13% Similarity=0.060 Sum_probs=111.7
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED 128 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d 128 (265)
..+.+..+|+++.++.- ++........ .++.+...++...++.+|..+|+++.|.+.+++++++.+.
T Consensus 109 ~g~~~~~~g~~~~A~~~--------~~~al~~~~~-----~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKF--------FKKAESKLIF-----VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHTTCHHHHHHH--------HHHHHTTGGG-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHH--------HHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 55678888888876662 2211111111 1223345688899999999999999999999999986332
Q ss_pred cH--HHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--
Q psy3174 129 HT--LTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGS------TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-- 195 (265)
Q Consensus 129 ~~--l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~------t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-- 195 (265)
.. ....+.++.+++ ...|++++|...|+++.+..+. ...+++++|.++..+|++++|...++++++.
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 21 122233333333 2338899999999998766442 2247899999999999999999999999983
Q ss_pred ---C----HHHHHHHHHHHHHcCCCCccC
Q psy3174 196 ---S----EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 ---~----pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+ +.++.+++.++..+|+.+++.
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence 3 347889999999999987654
No 111
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.96 E-value=1.7e-09 Score=87.19 Aligned_cols=119 Identities=7% Similarity=-0.013 Sum_probs=98.6
Q ss_pred HHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH-HHHcCCH--
Q psy3174 106 YLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV-LIAQDKY-- 182 (265)
Q Consensus 106 ~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~-~~~~g~~-- 182 (265)
+...|+++.|.+.++++++.+|++.......+.+.+.. +++++|...|+++....|.++..+..+|.+ +..+|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34578999999999999999999987766666666555 789999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 183 EEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 183 eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
++|...+.++++. ++.++.+++.++..+|+..++. |+++....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999999999987 6778999999999999987764 776654433
No 112
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.95 E-value=1.8e-08 Score=89.02 Aligned_cols=145 Identities=11% Similarity=0.044 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCCcCcc---------cccCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH
Q psy3174 71 LSCIKVLAEYLSIPSKNGS---------SNFGTHLE-INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH 140 (265)
Q Consensus 71 l~~~~~~A~~l~~~~~~e~---------~~~~~~lE-~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~ 140 (265)
..++..++.++...++.+. ...|++.+ .....+.++...|+++.|.+.|+++++.+|++.-..++.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4455566666654443222 23467776 7888899999999999999999999998888764444444332
Q ss_pred HHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHH----HHHHHHHHHHHcCCC
Q psy3174 141 IANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SED----TLINNMVTAGRLGKG 213 (265)
Q Consensus 141 l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pd----tl~nl~~~~~~~Gk~ 213 (265)
.. ..|++++|..+|++....+|.++.++...+..+..+|++++|..+++++++. +|+ +..+++.+....|+.
T Consensus 179 ~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HH-TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 21 1478999999999999999999999999999999999999999999999984 443 667778888888876
Q ss_pred Ccc
Q psy3174 214 NEM 216 (265)
Q Consensus 214 ~ea 216 (265)
.++
T Consensus 258 ~~a 260 (308)
T 2ond_A 258 ASI 260 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 113
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.95 E-value=9.4e-09 Score=82.00 Aligned_cols=115 Identities=13% Similarity=0.023 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcc------------------CCCcHHHHHHHHHHHHHhccccHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDK------------------DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQ 156 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~------------------~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~ 156 (265)
..+.+...+..+...|+++.|.+.|.++++. +|....+....+.+.+.. |++++|...++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--~~~~~A~~~~~ 87 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI--GDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4567778899999999999999999999997 444433333333333333 78999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH----HHHHHHHHHHHcC
Q psy3174 157 DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED----TLINNMVTAGRLG 211 (265)
Q Consensus 157 el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd----tl~nl~~~~~~~G 211 (265)
++....|..+..+..+|.++..+|+|++|...++++++.+|+ +...+..+...++
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998444 3334555554443
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.94 E-value=1.1e-08 Score=82.99 Aligned_cols=162 Identities=9% Similarity=-0.018 Sum_probs=108.8
Q ss_pred hhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHH
Q psy3174 18 SYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLE 97 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE 97 (265)
.|..|+|.+|...++.+. .+|.........+..+|..+|+++.++.. +.......... +..+....
T Consensus 2 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~~~~-----~~~~~~~~ 67 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALL-AHPATASGARFMLGYVYAFMDRFDEARAS--------FQALQQQAQKS-----GDHTAEHR 67 (203)
T ss_dssp -----CHHHHHHHHHHHH-TSTTTHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHTT-----CCHHHHHH
T ss_pred ccccccHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhCcHHHHHHH--------HHHHHHHHHHc-----CCcHHHHH
Confidence 477899999999432222 23433444556667889999999876662 22211211111 23345667
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHcc---CCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHHHhhc---CCC--
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDK---DEDHT----LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY---GST-- 165 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d~~----l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~---p~t-- 165 (265)
+...++.+|..+|+++.|.+.+++++++ .+|++ .+....+++.... |++++|...|++..... ++.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF--GDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhccchHH
Confidence 8888999999999999999999999886 33322 2233344554444 78999999999987543 221
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 166 -PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 166 -~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
...+..+|.++..+|++++|...++++++.
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 235789999999999999999999999987
No 115
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.94 E-value=2.1e-08 Score=92.25 Aligned_cols=192 Identities=10% Similarity=0.016 Sum_probs=123.7
Q ss_pred hhhhccHHHHHHHHhhccc---------CChhhhhhHHHHHHHHHHcccChhHHhhhc----------------CChHHH
Q psy3174 18 SYYLGNYQQCIKEGQRLKA---------TDPKVLLEKDFYVCRSYLAQKKYKVVLEEK----------------LPEELS 72 (265)
Q Consensus 18 ~fy~G~Y~~~i~~~~~~~~---------~~~~~~~e~~~~~~Raylalg~~~~~l~ei----------------~~~~l~ 72 (265)
.+-.|+|++|++..++... ..+.. ...-.-++.+|..+|+++.++.-+ ..+...
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~-~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRS-LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTT-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 3557999999988644321 11111 111222466789999998654322 111122
Q ss_pred HHHHHHHHhcCCCcCcc---------cccCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHccCCCcHHHH--HHHHH
Q psy3174 73 CIKVLAEYLSIPSKNGS---------SNFGTHLEINALKIHTYL---TMYRNDLALKELKVMQDKDEDHTLTQ--LCSAW 138 (265)
Q Consensus 73 ~~~~~A~~l~~~~~~e~---------~~~~~~lE~~al~v~~~l---~~~r~d~Aek~l~~~~~~~~d~~l~~--la~a~ 138 (265)
.-..++......++.+. ...|++++....++.++. ..++.+.|.+.|+++++++|++..+. ++..+
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 22222221112222111 224888888777776644 46778889999999999999886543 33333
Q ss_pred HHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 139 VHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 139 v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
..+....+++++|...|+++....|..+..++.+|.++..+|++++|...+.++++. +++++.+++.++...
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 333344578999999999999999999999999999999999999999999999988 555788888877554
No 116
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.93 E-value=5.7e-09 Score=89.70 Aligned_cols=163 Identities=18% Similarity=0.033 Sum_probs=117.9
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
.......+.++|..+|+++.++.- +........... ....+....+...++.+|..+|+++.|.+.+++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~--------~~~a~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 94 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPL--------CKQALEDLEKTS---GHDHPDVATMLNILALVYRDQNKYKDAANLLND 94 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHHH---CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345556667889999999876662 111111111000 012345678889999999999999999999999
Q ss_pred HHccC-----CC---cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc--------CCCHHHHHHHHHHHHHcCCHHHH
Q psy3174 122 MQDKD-----ED---HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY--------GSTPMLVNAQVAVLIAQDKYEEA 185 (265)
Q Consensus 122 ~~~~~-----~d---~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~--------p~t~~lLn~~A~~~~~~g~~eEA 185 (265)
+++.. ++ ...+....+++.. ..|++++|...|+++.+.. |....+++.+|.++..+|++++|
T Consensus 95 al~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 172 (311)
T 3nf1_A 95 ALAIREKTLGKDHPAVAATLNNLAVLYG--KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV 172 (311)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 98862 22 2323333344433 3488999999999988764 44566899999999999999999
Q ss_pred HHHHHHHhcC--------CHH---HHHHHHHHHHHcCCCCccC
Q psy3174 186 WDLLQDTAGD--------SED---TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 186 e~~l~~al~~--------~pd---tl~nl~~~~~~~Gk~~ea~ 217 (265)
..+++++++. +|. ++.+++.++..+|+..++.
T Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999886 555 6789999999999987654
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=1.7e-08 Score=83.09 Aligned_cols=128 Identities=11% Similarity=0.073 Sum_probs=103.9
Q ss_pred HHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 47 FYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 47 ~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
......+..+|+++.++..+ -..+ ..+..+...++.+|..+|+++.|.+.|+++++.+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~-----------~~a~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 67 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAF-----------SAVQ-----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----------HTSS-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHH-----------HHHc-----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34467778888888666521 1111 1256889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHH
Q psy3174 127 EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP----------------MLVNAQVAVLIAQDKYEEAWDLLQ 190 (265)
Q Consensus 127 ~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~----------------~lLn~~A~~~~~~g~~eEAe~~l~ 190 (265)
|++.......+.+.... |++++|...|+++.+..|.+. ..+..+|.++..+|++++|...++
T Consensus 68 ~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQT--EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99886665556655544 789999999999999888655 899999999999999999999999
Q ss_pred HHhcCCHH
Q psy3174 191 DTAGDSED 198 (265)
Q Consensus 191 ~al~~~pd 198 (265)
++++.+|+
T Consensus 146 ~al~~~p~ 153 (213)
T 1hh8_A 146 LATSMKSE 153 (213)
T ss_dssp HHHTTCCS
T ss_pred HHHHcCcc
Confidence 99999553
No 118
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.92 E-value=8e-09 Score=97.45 Aligned_cols=120 Identities=9% Similarity=-0.044 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH---------------TLTQLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~---------------~l~~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
+...+.+..++.++...|+++.|.+.|+++++++|++ ..+.+..+++.+.. +++++|...|++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~~~ 342 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL--REYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHH
Confidence 5667788899999999999999999999999998877 33333334443334 789999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS---EDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~---pdtl~nl~~~~~~~Gk~~ 214 (265)
+....|.++..+..+|.+++.+|+|++|...++++++++ +++..+++.+...+|+..
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999994 458889999998888643
No 119
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=5.2e-08 Score=88.17 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=116.0
Q ss_pred HHhhhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCccc
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSS 90 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~ 90 (265)
...|..|+|.+|+..+++... .++.........+..+|..+|+++.++.-+ -+.+..+-....
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~-------~~al~~~~~~~~----- 176 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI-------LQALDIYQNHPL----- 176 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-------HHHHHHHHTSTT-----
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH-------HHHHHHHHhCCC-----
Confidence 344678999999998644332 222234444555678899999998777621 111222211110
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC---CcH---HHHHHHHHHHHHhccccHHHHHHHHHHHHh----
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE---DHT---LTQLCSAWVHIANNVDKLNEAFYTLQDLID---- 160 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~---d~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~---- 160 (265)
..+....+...++.+|..+|+++.|.+.+++++++.+ +.. .+....|++.... |++++|...|++..+
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS--GDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHh
Confidence 1123567888899999999999999999999988532 221 1222234443334 789999999999988
Q ss_pred -hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 161 -KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 161 -~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..|..+..+..+|.++..+|++++|...++++++.
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777889999999999999999999999999986
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=3.9e-09 Score=85.72 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+...+.....+.+++..|+++.|...|+++++.+|++.......+.+.+.. |++++|...|+++....| ++......
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~--g~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET--KQFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT--TCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 345567888899999999999999999999999999987777666666555 789999999999999999 77766666
Q ss_pred HHHH-HHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 173 VAVL-IAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 173 A~~~-~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.+. ..+++..+|...++++++. +++++.+++.++..+|+.+++.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 6553 3445666789999999987 6779999999999999988764
No 121
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.87 E-value=1.2e-08 Score=92.34 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=111.6
Q ss_pred HHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC
Q psy3174 48 YVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE 127 (265)
Q Consensus 48 ~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~ 127 (265)
+....+..+|+++.++.. +......... .++.+...++...++.+|..+|+++.|.+.+++++++.+
T Consensus 106 ~~g~~~~~~g~~~~A~~~--------~~~al~~~~~-----~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGY--------YREAEKELPF-----VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp HHHHHHHHTTCHHHHHHH--------HHHHHTTGGG-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHH--------HHHHHHHHhh-----CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 345567788888876652 2211111111 122345678889999999999999999999999998643
Q ss_pred CcH--HHHHHHHHHHHH---hccccHHHHHHHHHHHHhhc---CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--
Q psy3174 128 DHT--LTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKY---GS---TPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-- 194 (265)
Q Consensus 128 d~~--l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~---p~---t~~lLn~~A~~~~~~g~~eEAe~~l~~al~-- 194 (265)
... ....+.++.+++ ...|++++|...|+++.+.. ++ ...+++++|.++..+|++++|...++++++
T Consensus 173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 211 112333333333 23388999999999987643 22 344789999999999999999999999998
Q ss_pred ---C---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 195 ---D---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 195 ---~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
. .+.++.+++.++..+|+.+++.
T Consensus 253 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 253 REKVPDLLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCChhHHHHHHHHHHHHHHCCCHHHHH
Confidence 4 4557889999999999987654
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.84 E-value=1.2e-08 Score=79.16 Aligned_cols=85 Identities=11% Similarity=0.075 Sum_probs=71.2
Q ss_pred HHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH----------H
Q psy3174 133 QLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED----------T 199 (265)
Q Consensus 133 ~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd----------t 199 (265)
..|.+|-++. ...|++++|+..|+++.+..|.++.+++++|.|++.+|+|++|...+.++++++|+ +
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3444444443 23488999999999999999999999999999999999999999999999998443 5
Q ss_pred HHHHHHHHHHcCCCCccC
Q psy3174 200 LINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ea~ 217 (265)
+.+++.++..+|+..+++
T Consensus 86 ~~~lg~~~~~~~~~~~A~ 103 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAV 103 (127)
T ss_dssp HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHH
Confidence 778999999999887654
No 123
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.84 E-value=4.5e-08 Score=84.04 Aligned_cols=115 Identities=8% Similarity=-0.134 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 93 GTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
+++.+....++.+|.. .++++.|.+.|+++.+.+.......++..+..-....+++++|...|++..+. ..+..
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a 112 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEG 112 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccH
Confidence 4455555555555555 55666666666655555422222222222221000025555666666555544 24455
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 169 VNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 169 Ln~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
++.+|.++.. +|++++|...++++++. +++...+++.++..
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 5555556655 56666666666665555 55555555555554
No 124
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.82 E-value=2.7e-08 Score=91.65 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHc----------------cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQD----------------KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLI 159 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~----------------~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~ 159 (265)
.+.+..++.++...|+++.|.+.|+++++ .++....+....+++.+.. +++++|...|+++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM--SDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHH
Confidence 34577788999999999999999999998 5555554444455554444 78999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 160 DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 160 ~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+..|..+..+..+|.++..+|++++|...+++++++ ++++..++..+...+|+.
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 666888888888877754
No 125
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.82 E-value=2.4e-09 Score=101.24 Aligned_cols=86 Identities=10% Similarity=-0.015 Sum_probs=64.9
Q ss_pred cccHHHHHHHHHHHH--------hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHH---HHHHHH
Q psy3174 145 VDKLNEAFYTLQDLI--------DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDT---LINNMV 205 (265)
Q Consensus 145 ~~~~~eA~~~~~el~--------~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdt---l~nl~~ 205 (265)
.|+|++|..+|++.. ..||++..++|++|.++..||+|+||+.+++++++. ||++ +.||+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 367788888888764 345556667888888888888888888888888775 7874 468888
Q ss_pred HHHHcCCCCccC---------------CCChhhhcHHHHH
Q psy3174 206 TAGRLGKGNEMS---------------VSPPFLFRSDETT 230 (265)
Q Consensus 206 ~~~~~Gk~~ea~---------------p~hp~~~~~~~~~ 230 (265)
++..+|+.++|. |+||.+.++..+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 888888877654 9999999876643
No 126
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.82 E-value=1.4e-08 Score=97.52 Aligned_cols=106 Identities=9% Similarity=-0.075 Sum_probs=73.4
Q ss_pred HHHHcCChHHHHHHHHHHHc-----cCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHH--------hhcCCCHHH
Q psy3174 105 TYLTMYRNDLALKELKVMQD-----KDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLI--------DKYGSTPML 168 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~~~~-----~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~--------~~~p~t~~l 168 (265)
.+..+|++++|+..++++++ ++++|+-+. .++.+|+ ..+|+|++|..++++.. ..||++...
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a--~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVL--RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 35578889999888888877 467775332 1122222 24478888888888864 456667778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHHH---HHHHHHHHHcCC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDTL---INNMVTAGRLGK 212 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~--------~pdtl---~nl~~~~~~~Gk 212 (265)
+|++|.+|..+|+|+||+.++++|+++ ||+|. .++..+...+|+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988888875 66643 355555554544
No 127
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.82 E-value=7.3e-09 Score=98.45 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ 179 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~ 179 (265)
..++.++..+|++++|.+.|+++++.+|++..+....+.+.... +++++|...|+++.+.+|.++..++.+|.++..+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34456788899999999999999999999876555555554444 7899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcC---CHHHHHHHHHH--HHHcCCCCc
Q psy3174 180 DKYEEAWDLLQDTAGD---SEDTLINNMVT--AGRLGKGNE 215 (265)
Q Consensus 180 g~~eEAe~~l~~al~~---~pdtl~nl~~~--~~~~Gk~~e 215 (265)
|++++|...++++++. +++...+++.+ +..+|+..+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~ 128 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 128 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 55678888887 666665544
No 128
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.81 E-value=1.3e-08 Score=92.26 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH-----------------HHHHHHHHHHHhccccHHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL-----------------TQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l-----------------~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
+...+.+...+.++...|+++.|.+.|+++++..|++.. +.+..+.+.+ ..+++++|...|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~--~~g~~~~A~~~~ 253 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI--KLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH--TTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHH
Confidence 446677888899999999999999999999999888652 2222222222 348899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 156 ~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
+++....|.++..++.+|.+++.+|+|++|...+++++++ ++++..++..+.....
T Consensus 254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 5557777777755443
No 129
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.81 E-value=1.2e-08 Score=97.79 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=75.6
Q ss_pred hccccHHHHHHHHHHHH--------hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHH---HHHH
Q psy3174 143 NNVDKLNEAFYTLQDLI--------DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDT---LINN 203 (265)
Q Consensus 143 ~g~~~~~eA~~~~~el~--------~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdt---l~nl 203 (265)
..+|+|++|..+|++.. ..||++..++|++|.++..+|+|+||+.+++++++. ||+| +.||
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45689999999999975 456677889999999999999999999999999986 9995 5799
Q ss_pred HHHHHHcCCCCccC---------------CCChhhhcHHH
Q psy3174 204 MVTAGRLGKGNEMS---------------VSPPFLFRSDE 228 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~---------------p~hp~~~~~~~ 228 (265)
+.++..+|+.++|. |+||.+.+...
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 439 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEA 439 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 99999999998764 99999998754
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.80 E-value=6.5e-08 Score=77.19 Aligned_cols=95 Identities=7% Similarity=-0.047 Sum_probs=79.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS---- 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~---- 217 (265)
.+++++|...|+++....|.++.+++.+|.|++.+|+|++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 388999999999999999999999999999999999999999999999998 6779999999999999988765
Q ss_pred ------CCChhh---hcHHHHHHHHHHHHhh
Q psy3174 218 ------VSPPFL---FRSDETTATLDACGLQ 239 (265)
Q Consensus 218 ------p~hp~~---~~~~~~~~~FD~~~~~ 239 (265)
|+++.. ..+........+...+
T Consensus 104 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~ 134 (164)
T 3sz7_A 104 KGIEAEGNGGSDAMKRGLETTKRKIEEANRG 134 (164)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 888763 3334444444444433
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.80 E-value=1.9e-07 Score=81.79 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=107.4
Q ss_pred HHHhhhhccHHHHHHHHhhcccC---ChhhhhhHHHH--HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcc
Q psy3174 15 VRNSYYLGNYQQCIKEGQRLKAT---DPKVLLEKDFY--VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGS 89 (265)
Q Consensus 15 vr~~fy~G~Y~~~i~~~~~~~~~---~~~~~~e~~~~--~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~ 89 (265)
+...+..|+|++++..+++.... .++...-...+ +.-.|...|+++.++. .+..........
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~--------~~~~al~~~~~~----- 148 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL--------ELKKLLNQQLTG----- 148 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHH--------HHHHHHHTCCCC-----
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHH--------HHHHHHHHhccc-----
Confidence 67889999999999997665432 23321111122 2344566667776555 222211211110
Q ss_pred cccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc----CCCcH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 90 SNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK----DEDHT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 90 ~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~----~~d~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
.+....+.+...++.+|..+|+++.|...|+++++. ..+.. .+....+++.... |++++|..+|++..+..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~--~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--SRYEESLYQVNKAIEIS 226 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH
Confidence 111233557888999999999999999999999852 12221 1122223333334 78999999999987654
Q ss_pred CC------CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcC
Q psy3174 163 GS------TPMLVNAQVAVLIAQD-KYEEAWDLLQDTAGD 195 (265)
Q Consensus 163 p~------t~~lLn~~A~~~~~~g-~~eEAe~~l~~al~~ 195 (265)
+. ...+++.+|.++..+| .+++|...+++|+..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 32 2568999999999999 579999999999874
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=6.9e-08 Score=85.51 Aligned_cols=153 Identities=12% Similarity=0.014 Sum_probs=103.1
Q ss_pred HHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC-
Q psy3174 50 CRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDED- 128 (265)
Q Consensus 50 ~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d- 128 (265)
..+|..+|+++.++. .+...++..... ++......++..++.+|..+|++++|...|++++++.++
T Consensus 43 ~~~~~~~g~~~~A~~--------~~~~al~~~~~~-----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKD--------AYLQEAEAHANN-----RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHTTCHHHHHH--------HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHH--------HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 456777888887665 222222221111 122234556777788999999999999999998876321
Q ss_pred -cHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---
Q psy3174 129 -HTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGST------PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--- 195 (265)
Q Consensus 129 -~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t------~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--- 195 (265)
+. ...+.+|.+++ .. +++++|...|++..+.+|.. ..+++.+|.++..+|+|++|...++++++.
T Consensus 110 g~~-~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 110 GTP-DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp TCH-HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 12233333333 23 78999999999988776532 457889999999999999999999999886
Q ss_pred C------HHHHHHHHHHHHHcCCCCccC
Q psy3174 196 S------EDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 196 ~------pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+ ..++.+++.++..+|+..++.
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 235678888888889876553
No 133
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.77 E-value=3e-08 Score=76.26 Aligned_cols=118 Identities=8% Similarity=-0.132 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC---cH---HHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC-----
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDED---HT---LTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS----- 164 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d---~~---l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~----- 164 (265)
..+...++.++...|+++.|.+.++++++..+. .. .+....+++.... |++++|...|++.....+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL--GEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCcH
Confidence 456778899999999999999999999886432 11 1222334443334 7899999999998765442
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C----HHHHHHHHHHHHHcCCCCc
Q psy3174 165 -TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----S----EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 165 -t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~----pdtl~nl~~~~~~~Gk~~e 215 (265)
....+..+|.++..+|++++|...++++++. + +.++.+++.++..+|+..+
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 147 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence 2457889999999999999999999999876 2 3367799999999998654
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=2.9e-08 Score=80.55 Aligned_cols=121 Identities=11% Similarity=-0.069 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC------CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---cCC
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKD------EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK---YGS 164 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~------~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~---~p~ 164 (265)
....+...++.++..+|+++.|...+++++++. +....+....+++.... |++++|...|++..+. .|+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA--GNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCc
Confidence 567888999999999999999999999998842 22233333344444444 7899999999998765 553
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHH----HHHHHHHHHHHcCCCCcc
Q psy3174 165 T----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SED----TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 165 t----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pd----tl~nl~~~~~~~Gk~~ea 216 (265)
. ...++.+|.++..+|++++|...++++++. ++. ++.+++.++..+|+..++
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 3 346899999999999999999999999975 333 467999999999997654
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=1.6e-07 Score=82.14 Aligned_cols=119 Identities=10% Similarity=0.065 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHhccccHHHHHHHHHHHH---hhcCCCH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDH------TLTQLCSAWVHIANNVDKLNEAFYTLQDLI---DKYGSTP 166 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~------~l~~la~a~v~l~~g~~~~~eA~~~~~el~---~~~p~t~ 166 (265)
+......+.++..+|+++.|.+.++++++..+.. ..+....+++.. ..|++++|..+|+++. +..|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA--ENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhcCccc
Confidence 3445567788899999999999999998764322 112222233333 3488999999999987 5666543
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--C-------HHHHHHHHHHHHHcCCCCcc
Q psy3174 167 ----MLVNAQVAVLIAQDKYEEAWDLLQDTAGD--S-------EDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 167 ----~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~-------pdtl~nl~~~~~~~Gk~~ea 216 (265)
.+++++|.++..+|+|++|..+++++++. + +.++.|++.++..+|+.+++
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 58899999999999999999999999987 2 56789999999999998764
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2.4e-07 Score=81.09 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=109.3
Q ss_pred HHHHhhhhccHHHHHHHHhhccc---CChhh--hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCc
Q psy3174 14 DVRNSYYLGNYQQCIKEGQRLKA---TDPKV--LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNG 88 (265)
Q Consensus 14 ~vr~~fy~G~Y~~~i~~~~~~~~---~~~~~--~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e 88 (265)
.++..+..|+|+++++.+++... ..++. ......++...|..+|+++.++.. +-..+.....
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-----------~~~al~~~~~-- 147 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE-----------LKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHH-----------HHHHHTTCCC--
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHH-----------HHHHHHHHhc--
Confidence 35677899999999988643322 22222 222233345667777888766552 1111211100
Q ss_pred ccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc---cCCCcH----HHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 89 SSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQD---KDEDHT----LTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 89 ~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~---~~~d~~----l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
.........+...++.+|..+|+++.|...|+++++ ..++.. .+....+++.. ..|++++|...|++....
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~--~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY--LDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 011122366888899999999999999999999984 344421 12222233333 338899999999998654
Q ss_pred cC---C---CHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcC
Q psy3174 162 YG---S---TPMLVNAQVAVLIAQDKYEEA-WDLLQDTAGD 195 (265)
Q Consensus 162 ~p---~---t~~lLn~~A~~~~~~g~~eEA-e~~l~~al~~ 195 (265)
.+ + ...+++.+|.++..+|++++| ...+++|+..
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 32 1 256889999999999999999 8889999875
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=5.9e-08 Score=73.74 Aligned_cols=74 Identities=9% Similarity=-0.001 Sum_probs=68.6
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
..|++++|...|+++....|.++.++.++|.|++.+|+|++|...++++++. ++.++.+++.++..+|+..++.
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 92 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 92 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 3488999999999999999999999999999999999999999999999998 6779999999999999987654
No 138
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.74 E-value=6.5e-08 Score=73.11 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=75.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---HHHHHHHHHHHHHcCCCCc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTP---MLVNAQVAVLIAQDKYEEAWDLLQDTAGD---S---EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~---~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~---pdtl~nl~~~~~~~Gk~~e 215 (265)
.|++++|...|+++...+|.++ ..+..+|.+++.+|+|++|...+.++++. + |+++.+++.++..+|+..+
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~ 94 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTE 94 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 3789999999999999999877 68899999999999999999999999987 5 7789999999999999877
Q ss_pred cC----------CCChhhhcHHHH
Q psy3174 216 MS----------VSPPFLFRSDET 229 (265)
Q Consensus 216 a~----------p~hp~~~~~~~~ 229 (265)
+. |+++.+......
T Consensus 95 A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 95 AQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCChHHHHHHHH
Confidence 64 888887665543
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.73 E-value=9.3e-07 Score=65.55 Aligned_cols=120 Identities=7% Similarity=-0.107 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy3174 43 LEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVM 122 (265)
Q Consensus 43 ~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~ 122 (265)
........+.+...|+++.++.. +..... ..|++......++.++..+|+++.|.+.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHF--------YGKAIE-----------LNPANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHH--------HHHHHH-----------cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 33445556778888888866652 111111 13456889999999999999999999999999
Q ss_pred HccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH
Q psy3174 123 QDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 123 ~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~e 183 (265)
++.+|++.......+++.... +++++|...|+++....|.++..+..++.++..+|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 73 ICIDPAYSKAYGRMGLALSSL--NKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCccCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999887766666666555 78999999999999999999999999999999999864
No 140
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.72 E-value=1.8e-07 Score=82.57 Aligned_cols=124 Identities=3% Similarity=-0.029 Sum_probs=102.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL-TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVN 170 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l-~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn 170 (265)
.|++.++....+.++...|+++.|.+.|+++++.+|++.- ..+..+.+ ....|++++|..+|+++.+..|.+..++.
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 172 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF--ARRAEGIKSGRMIFKKAREDARTRHHVYV 172 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH--HHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHH--HHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5788999999999999999999999999999999998752 22222222 23447899999999999999898877777
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 171 AQVAVLIA-QDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 171 ~~A~~~~~-~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.|.+... +|++++|..+++++++. +|+++.+++.+...+|+..++.
T Consensus 173 ~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 66666443 79999999999999988 7789999999999999887653
No 141
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.71 E-value=1.9e-07 Score=69.96 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=80.6
Q ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy3174 114 LALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTA 193 (265)
Q Consensus 114 ~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al 193 (265)
.|...|+++++.+|++.......+.+.... |++++|...|+++....|..+..+..+|.++..+|++++|...+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477889999999999987766666665555 789999999999999999999999999999999999999999999999
Q ss_pred cC-----CHHHHHHHHHHHHHcCC
Q psy3174 194 GD-----SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 194 ~~-----~pdtl~nl~~~~~~~Gk 212 (265)
+. ++..+..+......+|+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhcc
Confidence 87 33455566555555554
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=2.6e-07 Score=72.15 Aligned_cols=128 Identities=13% Similarity=0.035 Sum_probs=100.1
Q ss_pred HHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
.....+.+...|+++.++.. +..... ..|++.++...++.++..+|+++.|.+.++++++.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~--------~~~al~-----------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKF--------YSQAIE-----------LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHH--------HHHHHH-----------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44446778888888766652 111111 23556899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA--QVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~--~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
+|++..+....+.+.... |++++|...|+++....|.++..+.. .+..+..+|++++|...+.++.+
T Consensus 77 ~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 77 DKKYIKGYYRRAASNMAL--GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999886666666665545 78999999999999999988877644 44458899999999999988765
No 143
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.70 E-value=2.8e-08 Score=93.96 Aligned_cols=89 Identities=8% Similarity=-0.056 Sum_probs=72.9
Q ss_pred HcCChHHHHHHHHHHHc-----cCCCcHHH-----HHHHHHHHHHhccccHHHHHHHHHHHH--------hhcCCCHHHH
Q psy3174 108 TMYRNDLALKELKVMQD-----KDEDHTLT-----QLCSAWVHIANNVDKLNEAFYTLQDLI--------DKYGSTPMLV 169 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~-----~~~d~~l~-----~la~a~v~l~~g~~~~~eA~~~~~el~--------~~~p~t~~lL 169 (265)
..|++++|+..++++++ ++++|+.+ +|+.+| ..+|+|++|..+|++.. ..||++...+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y----~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC----LYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHH----HhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 46889999999999988 47887644 233333 24589999999999975 4566778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHHH
Q psy3174 170 NAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDTL 200 (265)
Q Consensus 170 n~~A~~~~~~g~~eEAe~~l~~al~~--------~pdtl 200 (265)
|++|.+|..||+|+||+.++++|+++ ||.|.
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999999986 88865
No 144
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.68 E-value=1.9e-06 Score=80.83 Aligned_cols=199 Identities=8% Similarity=-0.016 Sum_probs=91.4
Q ss_pred cCCcchhHHHHHhhhh-----ccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHc----ccChhHHhhhc----CChHHH
Q psy3174 6 DNEVDELFDVRNSYYL-----GNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLA----QKKYKVVLEEK----LPEELS 72 (265)
Q Consensus 6 ~~~~delf~vr~~fy~-----G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Rayla----lg~~~~~l~ei----~~~~l~ 72 (265)
.++++.++.+-..|+. |+|.+|+..+++...... .+..+.+.+.|.. .++++.++.-. ......
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~ 112 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQ 112 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 3456667777666664 788888888754433211 2235555666766 66666544333 111122
Q ss_pred HHHHHHHHhcC----CCcCcc-------cccCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCcHHHHHHHH
Q psy3174 73 CIKVLAEYLSI----PSKNGS-------SNFGTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDEDHTLTQLCSA 137 (265)
Q Consensus 73 ~~~~~A~~l~~----~~~~e~-------~~~~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d~~l~~la~a 137 (265)
+...++..+.. +++.+. .-..++++....++.+|.. .++++.|.+.|+++.+.++......|+..
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 32333333322 111111 0013445555555555555 45555555555555544322222222222
Q ss_pred HHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 138 WVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 138 ~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
+..-....+++++|+..|++..+. .++..++.+|.++.. .+++++|..+++++++. +++...+++.++..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Confidence 111000024455555555554443 123344444444444 44455555555554444 44444444444443
No 145
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.67 E-value=1e-08 Score=77.78 Aligned_cols=84 Identities=8% Similarity=-0.021 Sum_probs=72.0
Q ss_pred cccHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC-
Q psy3174 145 VDKLNEAFYTLQDLIDK---YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS- 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~---~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~- 217 (265)
.|++++|...|+++... .|.++..+.++|.++..+|+|++|...++++++. +|+++.+++.++..+|+..++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 37899999999999998 5778889999999999999999999999999998 7779999999999999988765
Q ss_pred ---------CCChhhhcHHH
Q psy3174 218 ---------VSPPFLFRSDE 228 (265)
Q Consensus 218 ---------p~hp~~~~~~~ 228 (265)
|++|.+..+..
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHhCCCcHHHHHHHH
Confidence 88887765544
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=2e-07 Score=68.09 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=73.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS---- 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~---- 217 (265)
.+++++|...|+++....|.++..+..+|.++..+|++++|...+.++++. ++.++.+++.++..+|+..++.
T Consensus 17 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999987 6778999999999999987654
Q ss_pred ------CCChhhhcH
Q psy3174 218 ------VSPPFLFRS 226 (265)
Q Consensus 218 ------p~hp~~~~~ 226 (265)
|+++.+...
T Consensus 97 ~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 97 EGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHTTCTTCHHHHHH
T ss_pred HHHHcCCCCHHHHHH
Confidence 777655443
No 147
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.65 E-value=1.4e-06 Score=81.72 Aligned_cols=120 Identities=8% Similarity=-0.049 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhhcCCCH
Q psy3174 93 GTHLEINALKIHTYLTM-----YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN-VDKLNEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~-----~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g-~~~~~eA~~~~~el~~~~p~t~ 166 (265)
.++.++.+.++.+|... +++++|.+.|+++.+.++......++..+. ..| ..++++|+..|++..+. .++
T Consensus 288 ~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~--~~g~~~~~~~A~~~~~~a~~~--~~~ 363 (490)
T 2xm6_A 288 QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYF--RLGSEEEHKKAVEWFRKAAAK--GEK 363 (490)
T ss_dssp TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHT--TCH
T ss_pred cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hCCCcccHHHHHHHHHHHHHC--CCH
Confidence 46778888888888887 889999999999888766555444444333 222 24789999999998876 467
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH----cCCCCcc
Q psy3174 167 MLVNAQVAVLIA----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR----LGKGNEM 216 (265)
Q Consensus 167 ~lLn~~A~~~~~----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~----~Gk~~ea 216 (265)
..++.+|.++.. .+++++|...++++.+. +|+...+++.++.. .|+..++
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 888999999999 89999999999999988 99999999998887 5554444
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=2.3e-07 Score=70.80 Aligned_cols=90 Identities=9% Similarity=-0.093 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLIN 202 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~n 202 (265)
++.+.......+.+.+.. +++++|...|+++....|.++..+..+|.|++.+|+|++|...++++++. ++.++.+
T Consensus 5 ~~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp -CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 344444444444444444 78999999999999999999999999999999999999999999999987 6778999
Q ss_pred HHHHHHHcCCCCccC
Q psy3174 203 NMVTAGRLGKGNEMS 217 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~ 217 (265)
++.++..+|+..++.
T Consensus 83 l~~~~~~~~~~~~A~ 97 (137)
T 3q49_B 83 LGQCQLEMESYDEAI 97 (137)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhhHHHHH
Confidence 999999999987654
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.64 E-value=2.6e-07 Score=81.78 Aligned_cols=162 Identities=10% Similarity=-0.077 Sum_probs=102.9
Q ss_pred hhhccHHHHHHHHhhccc-----CChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccC
Q psy3174 19 YYLGNYQQCIKEGQRLKA-----TDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFG 93 (265)
Q Consensus 19 fy~G~Y~~~i~~~~~~~~-----~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~ 93 (265)
...|+|.+|+..+.+... .++........-+..+|..+|+++.++. .+.......... ++..
T Consensus 47 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~--------~~~~Al~l~~~~-----g~~~ 113 (307)
T 2ifu_A 47 KNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ--------YIEKASVMYVEN-----GTPD 113 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH--------HHHHHHHHHHTT-----TCHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH--------HHHHHHHHHHHc-----CCHH
Confidence 345777777766433221 1222222233333566777777776555 222211211111 2222
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc------HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC--
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH------TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST-- 165 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~------~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t-- 165 (265)
....++..++.+|.. |+++.|...|++++++.++. ..+....+.+.. ..|++++|...|+++...+|.+
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV--RQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCC
Confidence 345677788899999 99999999999999875432 111222233322 3488999999999998876532
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCH
Q psy3174 166 ----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE 197 (265)
Q Consensus 166 ----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~p 197 (265)
...+.+++.|++.+|++++|...+++++ .+|
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 2378889999999999999999999999 855
No 150
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.9e-07 Score=66.75 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=62.9
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C------HHHHHHHHHHHHHcCCCC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---S------EDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~------pdtl~nl~~~~~~~Gk~~ 214 (265)
..|++++|...|+++....|.++.++.++|.|++.+|++++|...++++++. + +.++.+++.+...+|+..
T Consensus 16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ 95 (111)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3478889999999988888888888999999999999999999999999988 4 556788899999888876
Q ss_pred ccC
Q psy3174 215 EMS 217 (265)
Q Consensus 215 ea~ 217 (265)
++.
T Consensus 96 ~a~ 98 (111)
T 2l6j_A 96 IPV 98 (111)
T ss_dssp CCS
T ss_pred hhH
Confidence 654
No 151
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.63 E-value=4e-08 Score=92.62 Aligned_cols=85 Identities=11% Similarity=-0.108 Sum_probs=52.7
Q ss_pred cccHHHHHHHHHHHHh--------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHH---HHHHHH
Q psy3174 145 VDKLNEAFYTLQDLID--------KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDT---LINNMV 205 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~--------~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdt---l~nl~~ 205 (265)
++++++|..+++++.. .||++..+++++|.++..+|+|+||+.+++++++. ||++ +.||+.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 3566666666666542 33344556666666666666666666666666654 6663 346666
Q ss_pred HHHHcCCCCccC---------------CCChhhhcHHHH
Q psy3174 206 TAGRLGKGNEMS---------------VSPPFLFRSDET 229 (265)
Q Consensus 206 ~~~~~Gk~~ea~---------------p~hp~~~~~~~~ 229 (265)
++..+|+.+++. |+||.+++...+
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 666666665543 899999887543
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.62 E-value=7.2e-08 Score=74.14 Aligned_cols=72 Identities=13% Similarity=-0.050 Sum_probs=67.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
.|++++|...|+++....|+++..+..+|.++..+|++++|...++++++. +++++.+++.++..+|+..++
T Consensus 30 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 378999999999999999999999999999999999999999999999998 677999999999999987654
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=8.7e-07 Score=77.45 Aligned_cols=151 Identities=13% Similarity=0.038 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHHhcCCCcCcc-ccc---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHH-H
Q psy3174 67 LPEELSCIKVLAEYLSIPSKNGS-SNF---GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVH-I 141 (265)
Q Consensus 67 ~~~~l~~~~~~A~~l~~~~~~e~-~~~---~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~-l 141 (265)
..|.+..+..+++.+..+-..-- +.. .+..+.+...+..++..|+++.|.+.++++++..+..........|.. +
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l 121 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYV 121 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHH
Confidence 56777788888888775433110 111 223344445578899999999999999999997766554332121221 2
Q ss_pred H---hccccHHHHHHHHHHHHhhcC---CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----------CHHHHHH
Q psy3174 142 A---NNVDKLNEAFYTLQDLIDKYG---ST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----------SEDTLIN 202 (265)
Q Consensus 142 ~---~g~~~~~eA~~~~~el~~~~p---~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----------~pdtl~n 202 (265)
+ .+.+++++|...|+++....+ +. ..+++++|.++..+|+|++|..+++++++. .+.++.|
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 2 445789999999999987543 22 337999999999999999999999999952 2337789
Q ss_pred HHHHHHHcCCCCccC
Q psy3174 203 NMVTAGRLGKGNEMS 217 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~ 217 (265)
++.++..+|+..++.
T Consensus 202 lg~~y~~~~~y~~A~ 216 (293)
T 3u3w_A 202 HAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhHHHHHH
Confidence 999999999988765
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=2.8e-06 Score=62.34 Aligned_cols=116 Identities=13% Similarity=-0.001 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 44 EKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 44 e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
.....+.+++...|+++.++.. +..... ..|++.+....++.++...|+++.|.+.++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~-----------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEY--------YQKALE-----------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHH-----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHH-----------HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3345557788888888866652 111111 124567889999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC
Q psy3174 124 DKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180 (265)
Q Consensus 124 ~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g 180 (265)
+.+|+++.+....+.+.... +++++|...|+++.+..|.++..+..++.++.++|
T Consensus 71 ~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 71 ELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCccHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99998876655555555444 78999999999999999999999999999988775
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=2.7e-07 Score=75.79 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
..+...++.+|..+|+++.|.+.+.++++.+|++.-+....+.+.... +++++|...|+++....|.++.++..++.|
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF--GFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 378889999999999999999999999999999886666666665545 789999999999999999999999999999
Q ss_pred HHHcCCHHHHH-HHHHHHh
Q psy3174 176 LIAQDKYEEAW-DLLQDTA 193 (265)
Q Consensus 176 ~~~~g~~eEAe-~~l~~al 193 (265)
+..+|+..++. ..+...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 166 VNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 99999999988 3344333
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=2.2e-07 Score=71.20 Aligned_cols=99 Identities=8% Similarity=0.046 Sum_probs=81.6
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDT 199 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdt 199 (265)
+++........+...+.. +++++|...|+++....|++ ..++..+|.+++.+|+|++|...+.++++. ++++
T Consensus 24 ~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKC--GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp TCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred chHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 455555555555554444 78999999999999999986 789999999999999999999999999987 7789
Q ss_pred HHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 200 LINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 200 l~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
+.+++.++..+|+..++. |+++.+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 999999999999987654 777765543
No 157
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.61 E-value=5.1e-07 Score=63.80 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLG 211 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~G 211 (265)
+++++|...|+++....|.++..+..+|.+++.+|++++|...++++++. +++++.+++.++..+|
T Consensus 23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 45666666666666656666666666666666666666666666666655 4455566666655543
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=1.4e-07 Score=68.54 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTL 200 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl 200 (265)
+|++.-.....+.+.. ..+++++|...|+++....|.++..+..+|.++..+|++++|...++++++. +++++
T Consensus 2 ~p~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQY--DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHH--SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence 3444333333334433 3488999999999999999999999999999999999999999999999987 36688
Q ss_pred HHHHHHHHHc-CCCCccC
Q psy3174 201 INNMVTAGRL-GKGNEMS 217 (265)
Q Consensus 201 ~nl~~~~~~~-Gk~~ea~ 217 (265)
.+++.++..+ |+..++.
T Consensus 80 ~~l~~~~~~~~~~~~~A~ 97 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAE 97 (112)
T ss_dssp HHHHHHHTTCSSCSHHHH
T ss_pred HHHHHHHHHHhCCHHHHH
Confidence 8999999999 9876543
No 159
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.59 E-value=4.5e-07 Score=85.41 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=81.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc-----CCCcHHH-----HHHHHHHHHHhccccHHHHHHHHHHHH--------hhc
Q psy3174 101 LKIHTYLTMYRNDLALKELKVMQDK-----DEDHTLT-----QLCSAWVHIANNVDKLNEAFYTLQDLI--------DKY 162 (265)
Q Consensus 101 l~v~~~l~~~r~d~Aek~l~~~~~~-----~~d~~l~-----~la~a~v~l~~g~~~~~eA~~~~~el~--------~~~ 162 (265)
..+.-+..+|++++|++.+++++++ +++|+.+ +|+.++. .+|+|++|..+++++. ..|
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~----~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI----NLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH----hhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 3345566789999999999999874 6777543 3333333 3488999999999975 356
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CHHHH---HHHHHHHHH
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--------SEDTL---INNMVTAGR 209 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--------~pdtl---~nl~~~~~~ 209 (265)
|++...+|++|.++..+|+|+||+.++++|+++ ||.|. .||..+...
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 667778999999999999999999999999986 88854 566665543
No 160
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.2e-07 Score=68.11 Aligned_cols=93 Identities=9% Similarity=-0.081 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC------HHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST------PML 168 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t------~~l 168 (265)
+.+....++.++...|+++.|.+.|+++++.+|++.......+.+.+.. |++++|...|+++....|++ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL--GEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 5678889999999999999999999999999999886655555555444 78999999999999999987 888
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLL 189 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l 189 (265)
+..+|.++..+|++++|...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 999999999999998876544
No 161
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.56 E-value=7.6e-07 Score=62.85 Aligned_cols=86 Identities=12% Similarity=-0.035 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQ 172 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~ 172 (265)
+.+.+....++.++..+|+++.|.+.++++++.+|++.......+.+.... +++++|...|+++.+..|.++..+..+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345678889999999999999999999999999999886666666665545 789999999999999999999999999
Q ss_pred HHHHHHcC
Q psy3174 173 VAVLIAQD 180 (265)
Q Consensus 173 A~~~~~~g 180 (265)
|.++..+|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99998775
No 162
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=9.6e-07 Score=66.13 Aligned_cols=119 Identities=13% Similarity=0.058 Sum_probs=94.6
Q ss_pred hhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 42 LLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 42 ~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
.......+..++...|+++.++.. +. ..+ ...|++.+....++.++..+|+++.|.+.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~--------~~---~al--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKH--------YT---EAI--------KRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHH--------HH---HHH--------TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHH--------HH---HHH--------HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455567778888888766552 11 111 12356789999999999999999999999999
Q ss_pred HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC
Q psy3174 122 MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDK 181 (265)
Q Consensus 122 ~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~ 181 (265)
+++.+|++.......+.+.... +++++|...|+++....|.+...+..++.+++.+|+
T Consensus 76 a~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 76 CIQLEPTFIKGYTRKAAALEAM--KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhCCCchHHHHHHHHHHHHH--hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999887666666665555 789999999999999999888899999999998885
No 163
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.55 E-value=3e-06 Score=75.74 Aligned_cols=200 Identities=13% Similarity=-0.024 Sum_probs=113.7
Q ss_pred HHhhhhccHHHHHHHHhhcccCChh----hhhhHHHHHHHHHHcccChhHHhhhc----------CChH--HHHHHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKATDPK----VLLEKDFYVCRSYLAQKKYKVVLEEK----------LPEE--LSCIKVLAE 79 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~~~~~----~~~e~~~~~~Raylalg~~~~~l~ei----------~~~~--l~~~~~~A~ 79 (265)
.-.+..|+|.+++..+++.....|. ........+..++..+|+++.++..+ ..+. ..+...++.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4566788998888886443221121 12223334456677788887554433 1111 112233444
Q ss_pred HhcCCCcCcc---------------cc--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc-----HHHHHHHH
Q psy3174 80 YLSIPSKNGS---------------SN--FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH-----TLTQLCSA 137 (265)
Q Consensus 80 ~l~~~~~~e~---------------~~--~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~-----~l~~la~a 137 (265)
.+...++.+. +. .+....+...++.++..+|+++.|+..+++++++.+.. ..+....+
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 3333333211 00 12234455667888888888888888888887765431 22233334
Q ss_pred HHHHHhccccHHHHHHHHHHHHhhcCC--C-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhcCC-------HHHHHHH
Q psy3174 138 WVHIANNVDKLNEAFYTLQDLIDKYGS--T-PMLV----NAQVAVLIAQDKYEEAWDLLQDTAGDS-------EDTLINN 203 (265)
Q Consensus 138 ~v~l~~g~~~~~eA~~~~~el~~~~p~--t-~~lL----n~~A~~~~~~g~~eEAe~~l~~al~~~-------pdtl~nl 203 (265)
.+.... |++++|...+++.....+. . .... ...+.++..+|++++|...+.+++... ...+.++
T Consensus 182 ~~~~~~--g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 182 QCSLAR--GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHH--TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHc--CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 444434 6788888888887654321 1 1111 145566778888888888888887662 2245677
Q ss_pred HHHHHHcCCCCccC
Q psy3174 204 MVTAGRLGKGNEMS 217 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~ 217 (265)
+.++..+|+..++.
T Consensus 260 a~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 260 ARAQILLGEFEPAE 273 (373)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 78888888776543
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.52 E-value=8.5e-07 Score=65.94 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=67.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C-------HHHHHHHHHHHHHcCCCC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---S-------EDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~-------pdtl~nl~~~~~~~Gk~~ 214 (265)
.+++++|...|+++....|.++.+++.+|.++..+|++++|...+.++++. + +.++.+++.++..+|+..
T Consensus 17 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 96 (131)
T 1elr_A 17 KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence 378999999999999999999999999999999999999999999999987 4 778899999999999987
Q ss_pred ccC
Q psy3174 215 EMS 217 (265)
Q Consensus 215 ea~ 217 (265)
++.
T Consensus 97 ~A~ 99 (131)
T 1elr_A 97 DAI 99 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 165
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.51 E-value=1.1e-05 Score=67.56 Aligned_cols=112 Identities=7% Similarity=-0.099 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHH-hc-cccHHHHHHHHHHHHhhcCC
Q psy3174 93 GTHLEINALKIHTYLT----MYRNDLALKELKVMQDKDED--HTLTQLCSAWVHIA-NN-VDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~----~~r~d~Aek~l~~~~~~~~d--~~l~~la~a~v~l~-~g-~~~~~eA~~~~~el~~~~p~ 164 (265)
++++++.+.++.+|.. .++++.|.+.|+++.+.++. ++.+...++.+... .| .+++++|+..|++..+. |.
T Consensus 82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~ 160 (212)
T 3rjv_A 82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SR 160 (212)
T ss_dssp TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SC
T ss_pred CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CC
Confidence 3567777888888877 77888888888888877772 23333333333222 11 35788888888888777 55
Q ss_pred CHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy3174 165 TPMLVNAQVAVLIAQ-D-----KYEEAWDLLQDTAGD-SEDTLINNMV 205 (265)
Q Consensus 165 t~~lLn~~A~~~~~~-g-----~~eEAe~~l~~al~~-~pdtl~nl~~ 205 (265)
++..++.+|.++... | ++++|...++++.+. +++...++..
T Consensus 161 ~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~ 208 (212)
T 3rjv_A 161 TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDR 208 (212)
T ss_dssp TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556777788888764 2 788888888888877 7776655543
No 166
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.51 E-value=3e-06 Score=75.73 Aligned_cols=200 Identities=12% Similarity=-0.014 Sum_probs=130.5
Q ss_pred HHhhhhccHHHHHHHHhhccc---CChh--hhhhHHHHHHHHHHcccChhHHhhhc----------C---ChH-HHHHHH
Q psy3174 16 RNSYYLGNYQQCIKEGQRLKA---TDPK--VLLEKDFYVCRSYLAQKKYKVVLEEK----------L---PEE-LSCIKV 76 (265)
Q Consensus 16 r~~fy~G~Y~~~i~~~~~~~~---~~~~--~~~e~~~~~~Raylalg~~~~~l~ei----------~---~~~-l~~~~~ 76 (265)
.-.+..|+|..++..+++... ..++ ...........++..+|+++.++... . +|. ..+...
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 345568999999887644322 1222 22233445567789999997555433 1 132 233344
Q ss_pred HHHHhcCCCcCcc------------cc--cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC--Cc-H--HHH--HH
Q psy3174 77 LAEYLSIPSKNGS------------SN--FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDE--DH-T--LTQ--LC 135 (265)
Q Consensus 77 ~A~~l~~~~~~e~------------~~--~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~-~--l~~--la 135 (265)
++..+...++.+. .. .+....+...++.++...|+++.|...++++.++.+ +. . ... ++
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 5554433333221 01 122456788899999999999999999999987522 11 1 111 13
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHhhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----C----HHHHHH
Q psy3174 136 SAWVHIANNVDKLNEAFYTLQDLIDKYGST----PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----S----EDTLIN 202 (265)
Q Consensus 136 ~a~v~l~~g~~~~~eA~~~~~el~~~~p~t----~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~----pdtl~n 202 (265)
.+++.+.. |++++|...+++.....|.. ...+..+|.+++.+|++++|...+++++.. + ++++.+
T Consensus 221 ~~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 221 RVIYWQMT--GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 33333334 78999999999987765532 335678999999999999999999999876 1 136678
Q ss_pred HHHHHHHcCCCCccC
Q psy3174 203 NMVTAGRLGKGNEMS 217 (265)
Q Consensus 203 l~~~~~~~Gk~~ea~ 217 (265)
++.++..+|+..++.
T Consensus 299 la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHHTCHHHHH
T ss_pred HHHHHHHhCCHHHHH
Confidence 899999999876643
No 167
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.50 E-value=5e-06 Score=78.68 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
.....+.++...|+++.|.+.|+++++..|......++.+|+... ..|++++|..+|+++...+|+++.++...+..+.
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~-~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 333444444444444444444444444444333333333333221 1234444444444444444444444444444444
Q ss_pred HcCCHHHHHHHHHHHhc
Q psy3174 178 AQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~ 194 (265)
.+|++++|..++++++.
T Consensus 437 ~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLT 453 (530)
T ss_dssp TTTCHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHh
Confidence 44444444444444444
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=3.6e-07 Score=72.64 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=71.2
Q ss_pred cccHHHHHHHHHHHHhh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHH
Q psy3174 145 VDKLNEAFYTLQDLIDK------------------YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINN 203 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~------------------~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl 203 (265)
.|++++|...|+++... .|..+.+++++|.|++.+|+|++|...+.++++. ++..+.++
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 103 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRR 103 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 48899999999999887 5666679999999999999999999999999998 67799999
Q ss_pred HHHHHHcCCCCccC----------CCCh-hhhc
Q psy3174 204 MVTAGRLGKGNEMS----------VSPP-FLFR 225 (265)
Q Consensus 204 ~~~~~~~Gk~~ea~----------p~hp-~~~~ 225 (265)
+.++..+|+..++. |+++ .+..
T Consensus 104 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 136 (162)
T 3rkv_A 104 AKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999998765 8887 4443
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=1e-06 Score=73.88 Aligned_cols=115 Identities=10% Similarity=-0.057 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CHH
Q psy3174 94 THLEINALKIHTYLTMY----RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TPM 167 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~----r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~~ 167 (265)
+++++.+.++.+|.. + ++++|.+.|+++.+.+.......|+..+..-....+++++|+..|++..+..|. .+.
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD 126 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence 445555555555554 4 455555555555433322222222222110000024455555555555544331 244
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q psy3174 168 LVNAQVAVLIA----QDKYEEAWDLLQDTAGD--SEDTLINNMVTAGR 209 (265)
Q Consensus 168 lLn~~A~~~~~----~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~ 209 (265)
.++.+|.++.. .+++++|..+++++.+. +|+...|++.++..
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 55555555555 55555555555555544 44455555554443
No 170
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=1.5e-06 Score=78.39 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
..+...++.+|+.+|+++.|.+.++++++++|+++.+....+.+.... +++++|...|+++.+..|.++..+..++.+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV--NDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 688999999999999999999999999999999987666666665545 789999999999999999999999999999
Q ss_pred HHHcCCHHHHH-HHHHHHhcC
Q psy3174 176 LIAQDKYEEAW-DLLQDTAGD 195 (265)
Q Consensus 176 ~~~~g~~eEAe-~~l~~al~~ 195 (265)
+..+|++++|+ .++.+.+..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999994 467776654
No 171
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.47 E-value=1.4e-06 Score=82.44 Aligned_cols=122 Identities=2% Similarity=0.013 Sum_probs=102.1
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
.|++..+....+.++...|+++.|.+.|+++++.+|+++. .+|++++ ...|++++|..+|++..+..|.+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch----HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 5899999999999999999999999999999999998741 2444443 34578999999999999998877766
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 169 VNAQVAV-LIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 169 Ln~~A~~-~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.+.|.+ +..+|++++|..+++++++. +|+++.+++.+...+|+..++.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 6666655 44699999999999999988 7889999999999999876543
No 172
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.47 E-value=3.3e-07 Score=75.24 Aligned_cols=92 Identities=7% Similarity=0.012 Sum_probs=74.0
Q ss_pred HHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhcc------ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 107 LTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNV------DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 107 l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~------~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
.+++++++|.+.++++++.+|++.-. ++..++..+..-+ +.+++|+..|++.....|+.+..++++|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 35678999999999999999998743 3333333322110 236799999999999999999999999999999
Q ss_pred cC-----------CHHHHHHHHHHHhcCCHH
Q psy3174 179 QD-----------KYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 179 ~g-----------~~eEAe~~l~~al~~~pd 198 (265)
+| +|++|..++++|++++|+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 85 899999999999999665
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.46 E-value=2.2e-06 Score=65.51 Aligned_cols=137 Identities=4% Similarity=-0.168 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 44 EKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 44 e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
.....+...+...|+++.++.- +.......... +.......+...++.++..+|+++.|.+.+++++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~--------~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIA--------HEQRLLIAKEF-----GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556778888888866652 11111111100 1112234577888999999999999999999998
Q ss_pred ccCCC---c---HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC---C---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 124 DKDED---H---TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG---S---TPMLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 124 ~~~~d---~---~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p---~---t~~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
++.+. . .......+++.... +++++|...+++.....+ + ....+..+|.++..+|++++|...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 85332 1 11222333343333 789999999999875532 2 345788999999999999999999999
Q ss_pred HhcC
Q psy3174 192 TAGD 195 (265)
Q Consensus 192 al~~ 195 (265)
+++.
T Consensus 155 a~~~ 158 (164)
T 3ro3_A 155 HLEI 158 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 174
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.46 E-value=1.7e-06 Score=78.35 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC------CC
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDE--DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG------ST 165 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p------~t 165 (265)
.+...+.+++.++...|++++|.+.+.+.++.+| +++-..+..+-+.+.. ||.+.|..+++++.+..| +.
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~--~r~d~A~k~l~~~~~~~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN--NNVSTASTIFDNYTNAIEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCccccccchH
Confidence 4556678999999999999999999999988886 6776666667776666 889999999999999988 34
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCcc
Q psy3174 166 PMLVNAQVAVLIAQD--KYEEAWDLLQDTAGDSED-----TLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 166 ~~lLn~~A~~~~~~g--~~eEAe~~l~~al~~~pd-----tl~nl~~~~~~~Gk~~ea 216 (265)
+.+....||+.+.+| ++.+|..+++++.+..|+ +|.| +..++|+.+++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA 230 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence 555556699999999 999999999999888543 5666 89999998764
No 175
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.46 E-value=1.8e-06 Score=63.74 Aligned_cols=86 Identities=13% Similarity=0.075 Sum_probs=65.1
Q ss_pred CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CHHHH
Q psy3174 126 DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SEDTL 200 (265)
Q Consensus 126 ~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~pdtl 200 (265)
+|+++......+.+.+.. |++++|...|+++....|..+..+..+|.|+..+|++++|...++++++. +....
T Consensus 3 ~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp --CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 566665555555555444 77999999999999999988889999999999999999999999999987 44556
Q ss_pred HHHHHHHHHcCCC
Q psy3174 201 INNMVTAGRLGKG 213 (265)
Q Consensus 201 ~nl~~~~~~~Gk~ 213 (265)
..+..++...|+.
T Consensus 81 ~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 81 SELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccc
Confidence 6666666555543
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.45 E-value=2.8e-07 Score=87.47 Aligned_cols=97 Identities=12% Similarity=0.011 Sum_probs=81.3
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNA 171 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~ 171 (265)
.|++.+.+..++.+|..+|++++|.+.++++++++|++..+....+.+.... |++++|...|+++.+..|.++..+..
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~ 113 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL--GKFRAALRDYETVVKVKPHDKDAKMK 113 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCTTHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4667899999999999999999999999999999999886655555555545 78999999999999999988888888
Q ss_pred HHHH--HHHcCCHHHHHHHHH
Q psy3174 172 QVAV--LIAQDKYEEAWDLLQ 190 (265)
Q Consensus 172 ~A~~--~~~~g~~eEAe~~l~ 190 (265)
++.+ ++.+|++++|...++
T Consensus 114 l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 114 YQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 8888 999999999999999
No 177
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=4.5e-07 Score=81.11 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=127.1
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChh-HHhhhc--CChHHHHHHHHHHHhc-CCCc-
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK-VVLEEK--LPEELSCIKVLAEYLS-IPSK- 86 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~-~~l~ei--~~~~l~~~~~~A~~l~-~~~~- 86 (265)
+|+.---+..|+++.+...+.+....+|+. ++.|.-| ++.|..+ .++..+ ....+...+ .-+. .++.
T Consensus 10 ~~~~~~~~~~~d~~~A~~~F~~a~~~dP~~---~Daw~g~--~a~g~~~~~~L~~~~r~~~a~~~~~---~~l~l~p~~l 81 (282)
T 4f3v_A 10 LFESAVSMLPMSEARSLDLFTEITNYDESA---CDAWIGR--IRCGDTDRVTLFRAWYSRRNFGQLS---GSVQISMSTL 81 (282)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHH--HHTTCCCHHHHHHHHHTGGGTTHHH---HTTTCCGGGG
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHhChhh---hHHHHhH--HHccCCcHHHHHHHHHHHHHHHHHH---HHhcCChhhh
Confidence 455533456899999999986666666664 3677544 3334432 222211 000000000 0000 0000
Q ss_pred ---Cc-cccc-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHH
Q psy3174 87 ---NG-SSNF-------GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTL 155 (265)
Q Consensus 87 ---~e-~~~~-------~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~ 155 (265)
.. .+-| .+--++....+.++..+||+++|.+.|..+...+|+++ .+...+.+.+.. +++++|...|
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~--~r~~dA~~~l 158 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA--ERWTDVIDQV 158 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT--TCHHHHHHHH
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc--CCHHHHHHHH
Confidence 00 0111 23357777788899999999999999999988888888 777777776656 7899999999
Q ss_pred HHHHhhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CHHHHHHHHHHHHHcCCCCccC
Q psy3174 156 QDLIDKYGST---PMLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 156 ~el~~~~p~t---~~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
++.... |+. ..+...+|.++..+|+++||+..++++... .++.+++++.|+..+|+.+++.
T Consensus 159 ~~a~~~-~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 159 KSAGKW-PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228 (282)
T ss_dssp TTGGGC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhcc-CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence 866443 221 236788899999999999999999999854 2357889999999999987754
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=1.1e-06 Score=77.20 Aligned_cols=73 Identities=11% Similarity=-0.070 Sum_probs=68.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 145 VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
.|++++|...|+++....|.++.+++++|.+++.+|+|++|...++++++. ++..+.+++.++..+|+..++.
T Consensus 17 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 388999999999999999999999999999999999999999999999998 6668899999999999988765
No 179
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.39 E-value=2.5e-06 Score=79.96 Aligned_cols=115 Identities=9% Similarity=-0.049 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHccCCCcHH--HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 93 GTHLEINALKIHTYLTMY---RNDLALKELKVMQDKDEDHTL--TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~---r~d~Aek~l~~~~~~~~d~~l--~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
..++++.+.++.+|...| ++++|.+.|+++.+.++.... ..|+..+..-....+++++|+..|+++. |..+.
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~ 249 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA 249 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH
Confidence 455668999999999999 999999999999999988876 4555544321112268899999999987 77778
Q ss_pred HHHHHHHH-H--HHcCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q psy3174 168 LVNAQVAV-L--IAQDKYEEAWDLLQDTAGD-SEDTLINNMVTAGRLG 211 (265)
Q Consensus 168 lLn~~A~~-~--~~~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~~G 211 (265)
.++.+|.+ + ...|++++|..+++++.+. +|+...|++.++. .|
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cC
Confidence 88889988 4 5789999999999999988 8999999998887 66
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=8.2e-07 Score=72.95 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=66.0
Q ss_pred cccHHHHHHHHHHHHhhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHhcC-------CHH---HH--
Q psy3174 145 VDKLNEAFYTLQDLIDKYGS-------TPM-----LVNAQVAVLIAQDKYEEAWDLLQDTAGD-------SED---TL-- 200 (265)
Q Consensus 145 ~~~~~eA~~~~~el~~~~p~-------t~~-----lLn~~A~~~~~~g~~eEAe~~l~~al~~-------~pd---tl-- 200 (265)
.|+|++|...|++..+..|+ ... +++++|.|+..+|+|+||...+.+|+++ +|+ .+
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~ 103 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS 103 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence 38999999999999998887 443 8999999999999999999999999988 776 77
Q ss_pred --HHHHHHHHHcCCCCccC
Q psy3174 201 --INNMVTAGRLGKGNEMS 217 (265)
Q Consensus 201 --~nl~~~~~~~Gk~~ea~ 217 (265)
+|+++++..+|+.++++
T Consensus 104 ~~~~rG~aL~~lgr~eEAl 122 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAM 122 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHH
Confidence 89999999999988765
No 181
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.38 E-value=4.9e-07 Score=67.68 Aligned_cols=90 Identities=10% Similarity=-0.073 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC--------
Q psy3174 149 NEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS-------- 217 (265)
Q Consensus 149 ~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~-------- 217 (265)
++|...|+++....|.++..++.+|.+++.+|++++|...++++++. +++++.+++.++..+|+..++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999987 6678999999999999987754
Q ss_pred --CCChhhhcHHHHHHHHHHHHh
Q psy3174 218 --VSPPFLFRSDETTATLDACGL 238 (265)
Q Consensus 218 --p~hp~~~~~~~~~~~FD~~~~ 238 (265)
|.++......+....+.++..
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 554444444444455555443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=9e-08 Score=90.18 Aligned_cols=116 Identities=8% Similarity=-0.037 Sum_probs=86.5
Q ss_pred cCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC---------------HHHHHHHH
Q psy3174 109 MYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST---------------PMLVNAQV 173 (265)
Q Consensus 109 ~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t---------------~~lLn~~A 173 (265)
+++++.|...+....+..++........++..+.. ++|++|...|+++....|.. ..+++++|
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG--GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444444444444444 78999999999999999977 67999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
.|++++|+|++|...+.++++. ++..+.+++.++..+|+..++. |+++.+...
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 390 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999998 6779999999999999988765 887755443
No 183
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=7.1e-07 Score=79.84 Aligned_cols=102 Identities=16% Similarity=0.027 Sum_probs=81.0
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCc----HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc--CC-
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDH----TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY--GS- 164 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~----~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~--p~- 164 (265)
.|+.+ ..+.++.+++..+|++.|++.|+.+..+.++. +-..++.++. .-|++++|...|++..... |.
T Consensus 132 ~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~----~LG~~~eAl~~l~~a~~g~~~P~~ 206 (282)
T 4f3v_A 132 GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA----NLALFTEAERRLTEANDSPAGEAC 206 (282)
T ss_dssp TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTSTTTTTT
T ss_pred CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH----HCCCHHHHHHHHHHHhcCCCCccc
Confidence 36667 88999999999999999999999887765221 2222222222 3388999999999997543 54
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
.+..+..+|.|+.++|+.+||...+++++..+|+
T Consensus 207 ~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 207 ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 5568899999999999999999999999999877
No 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.22 E-value=6.5e-06 Score=59.48 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPM-LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~-lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+++++|...|+++.+..|.++. .+..+|.++..+|++++|...++++++.
T Consensus 14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5677777777777777777777 7777777777777777777777777776
No 185
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.22 E-value=6.9e-05 Score=70.08 Aligned_cols=158 Identities=9% Similarity=-0.035 Sum_probs=114.7
Q ss_pred HHHHHHHHHHccc---ChhHHhhhc------CChHHHHHHHHHHHhcCC----CcCcc-------cccCCCHHHHHHHHH
Q psy3174 45 KDFYVCRSYLAQK---KYKVVLEEK------LPEELSCIKVLAEYLSIP----SKNGS-------SNFGTHLEINALKIH 104 (265)
Q Consensus 45 ~~~~~~Raylalg---~~~~~l~ei------~~~~l~~~~~~A~~l~~~----~~~e~-------~~~~~~lE~~al~v~ 104 (265)
....+..+|...| ++..++.-+ .++....+..++..+... .+.+. .- ++++++.+.++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 4556667777788 665555444 344444434455555432 11111 22 889999999999
Q ss_pred H-H--HHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 105 T-Y--LTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN---VDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 105 ~-~--l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g---~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+ | ...+++++|.+.|+++.+.+.......|+ ++.. .| ..++++|+..|++.. |..+..++.+|.++..
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg--~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAADQPRAELLLG--KLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHH--HHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH--HHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 9 4 56899999999999998776444444444 4433 33 248999999999998 7788999999999987
Q ss_pred ----cCCHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 179 ----QDKYEEAWDLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 179 ----~g~~eEAe~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
..++++|...++++.+. +|+...|++.++..
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQ 366 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHh
Confidence 44999999999999998 99999999988764
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=3.7e-05 Score=69.57 Aligned_cols=188 Identities=10% Similarity=0.005 Sum_probs=123.1
Q ss_pred cCCcch-hHHHHHhhhhccHHHHHHHHhhcccCChhh----------------hhhHHHHHHHHHHcccChhHHhhhc--
Q psy3174 6 DNEVDE-LFDVRNSYYLGNYQQCIKEGQRLKATDPKV----------------LLEKDFYVCRSYLAQKKYKVVLEEK-- 66 (265)
Q Consensus 6 ~~~~de-lf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~----------------~~e~~~~~~Raylalg~~~~~l~ei-- 66 (265)
|+.|.. |-..|..+-.|+|++|++.++++....+.. ..+....+...|..+|+++.+++-+
T Consensus 1 ~s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 1 MSLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp CCSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566655 455688899999999999865443222211 1123445578899999998766544
Q ss_pred ------CC---hHHHHHHH-HHHHhcCCCcCcc---------------cccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy3174 67 ------LP---EELSCIKV-LAEYLSIPSKNGS---------------SNFGTHLEINALKIHTYLTMYRNDLALKELKV 121 (265)
Q Consensus 67 ------~~---~~l~~~~~-~A~~l~~~~~~e~---------------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~ 121 (265)
.. .....++. +..+....+..+. ++......+...++.+|..+|+++.|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 11 11223333 3333334443221 12244456778889999999999999999999
Q ss_pred HHcc----CCCc--HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc---CCC----HHHHHHHHHHHHHcCCHHHHHHH
Q psy3174 122 MQDK----DEDH--TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY---GST----PMLVNAQVAVLIAQDKYEEAWDL 188 (265)
Q Consensus 122 ~~~~----~~d~--~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~---p~t----~~lLn~~A~~~~~~g~~eEAe~~ 188 (265)
++.. ++.. +-+.+.++.+.+.. +++.+|..+|+++.... +.. ..++..++..+...|+|.+|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKL--RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8763 2221 22333444444444 78999999999976543 322 23678889999999999999999
Q ss_pred HHHHhcC
Q psy3174 189 LQDTAGD 195 (265)
Q Consensus 189 l~~al~~ 195 (265)
+.++++.
T Consensus 239 ~~~a~~~ 245 (434)
T 4b4t_Q 239 FFESFES 245 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 187
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.20 E-value=0.00023 Score=64.01 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=104.5
Q ss_pred cCCCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHH--HHHHHHHHHHhhc
Q psy3174 92 FGTHLEINALKIHTY----LTM---YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLN--EAFYTLQDLIDKY 162 (265)
Q Consensus 92 ~~~~lE~~al~v~~~----l~~---~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~--eA~~~~~el~~~~ 162 (265)
+|++..+..-+..++ ... ++++.+.+.+.++++.+|.+.-+=.--.|+--.. ++++ +++.+++++.+.+
T Consensus 99 nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l--~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 99 NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF--DLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cccChHHHHHHHHHHHHhC
Confidence 466777777777777 556 7788888888888888888873222222332112 4566 8888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC--------------CC
Q psy3174 163 GSTPMLVNAQVAVLIAQDK------YEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS--------------VS 219 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~------~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~--------------p~ 219 (265)
|.+...++..+++....|+ ++++.+...+++.. |.....++..+....|+..+.. |.
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 8888888888888888887 88888888888877 5557778888888888765422 44
Q ss_pred ChhhhcHH-----------HHHHHHHHHHhhcccc
Q psy3174 220 PPFLFRSD-----------ETTATLDACGLQSNSE 243 (265)
Q Consensus 220 hp~~~~~~-----------~~~~~FD~~~~~~~~~ 243 (265)
++.+.... +....||+++.+++|.
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence 55554443 3455677777666653
No 188
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.18 E-value=3.6e-06 Score=60.86 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHH-HHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTL-TQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l-~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
+..+.++...|+++.|.+.++++++.+|++.. .....+.+.... |++++|...|+++....|..+..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL--GDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 45788999999999999999999999999876 655555555444 78999999999999999988776532
Q ss_pred cCCHHHHHHHHHHHhcCC
Q psy3174 179 QDKYEEAWDLLQDTAGDS 196 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~~ 196 (265)
+.+.+|...+.++...+
T Consensus 75 -~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp -HHHHHHHHHHCCTTHHH
T ss_pred -HHHHHHHHHHHHHhccC
Confidence 67777777776665543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.11 E-value=1.4e-05 Score=73.28 Aligned_cols=135 Identities=8% Similarity=0.004 Sum_probs=100.3
Q ss_pred HHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcC-cccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 48 YVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKN-GSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 48 ~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~-e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
.....+..+|+++.++... -+++...-......... .....+....++..++.+|+.+|++++|.+.++++++++
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y----~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKY----TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHH----HHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3456688888888776632 11122111110000000 002346678899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3174 127 EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDL 188 (265)
Q Consensus 127 ~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~ 188 (265)
|++.-+....+.+.... +++++|...|+++.+..|.++.++..++.++..++++++|+..
T Consensus 304 p~~~~a~~~lg~~~~~~--g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGL--KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99886666666665545 7899999999999999999999999999999999999999764
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.07 E-value=5e-06 Score=75.04 Aligned_cols=100 Identities=7% Similarity=0.057 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH-
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV- 175 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~- 175 (265)
.+...++.+|+.+|+++.|.+.++++++++|++.-+....+.+.+.. +++++|...|+++....|.++.+++.++.+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~--g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAEL--GQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--TCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 47888999999999999999999999999999886655555555444 789999999999999999988888888888
Q ss_pred HHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~~pd 198 (265)
....+..++|..++.+++..+|+
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Confidence 56677888999999999987554
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.05 E-value=4e-05 Score=56.27 Aligned_cols=70 Identities=14% Similarity=-0.048 Sum_probs=59.4
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
.|++.+..+.++.+|..+|+++.|.+.|+++++.+|+++.+....+.+.... |++++|...|++..+..|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~--g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL--DRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhhh
Confidence 4788999999999999999999999999999999999887666666665545 789999999999887655
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.98 E-value=5.5e-05 Score=59.29 Aligned_cols=101 Identities=9% Similarity=-0.140 Sum_probs=61.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH---
Q psy3174 102 KIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA--- 178 (265)
Q Consensus 102 ~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~--- 178 (265)
++.+|...+.++.|.+.|+++.+.+......+|+..+..-.....++++|+..|++..+. ..+...+.+|.++..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 556666666667777777777666444443344433331000135677777777777665 345666677777777
Q ss_pred -cCCHHHHHHHHHHHhcC-CHHHHHHHH
Q psy3174 179 -QDKYEEAWDLLQDTAGD-SEDTLINNM 204 (265)
Q Consensus 179 -~g~~eEAe~~l~~al~~-~pdtl~nl~ 204 (265)
.+++++|...+++|.+. +|+...++.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~~~A~~~l~ 136 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGSEDACGILN 136 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 77777777777777776 666655543
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=1e-05 Score=66.35 Aligned_cols=67 Identities=6% Similarity=-0.053 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY----------EEAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~----------eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
+.+++|...|++..+..|.++..++.+|.+++.+|++ ++|...+++|+++ +++++.|++.++..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999999999999999986 5999999999998 66689999999999874
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.87 E-value=8.7e-05 Score=58.11 Aligned_cols=91 Identities=9% Similarity=-0.087 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----cCCHHHHH
Q psy3174 111 RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA----QDKYEEAW 186 (265)
Q Consensus 111 r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~----~g~~eEAe 186 (265)
++++|.+.|+++.+.++.... |+..+. .+..+++|+..|++..+. .++...+.+|.++.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~--lg~~y~----~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC--LSLVSN----SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH--HHHHTC----TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh--HHHHHH----cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 588999999999998866654 333222 335677899999999887 567899999999999 99999999
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHH
Q psy3174 187 DLLQDTAGD-SEDTLINNMVTAGR 209 (265)
Q Consensus 187 ~~l~~al~~-~pdtl~nl~~~~~~ 209 (265)
.++++|.+. +|+...|++.++..
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHC
Confidence 999999999 99999999998876
No 195
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.82 E-value=0.0029 Score=57.99 Aligned_cols=118 Identities=3% Similarity=-0.060 Sum_probs=100.6
Q ss_pred ccCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHH--------HHHHHHHH
Q psy3174 91 NFGTHLEINALKIHTYLTM-Y-RNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLN--------EAFYTLQD 157 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~-~-r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~--------eA~~~~~e 157 (265)
.+|++..+..-+..++..+ + +++.+.+.+.++++.+|.+. .+|.+-. ..-++++ +++.++++
T Consensus 118 ~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy-----~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 118 QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY-----HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH-----HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence 4688999999999999998 8 99999999999999999998 4554432 1114455 99999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 158 LIDKYGSTPMLVNAQVAVLIAQDK-------YEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 158 l~~~~p~t~~lLn~~A~~~~~~g~-------~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+.+.+|.+...++..+.+....|+ ++++.++..+++.. |.....++..++...|+.
T Consensus 193 ~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 193 MLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998 79999999999988 455777888888888876
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00015 Score=65.56 Aligned_cols=157 Identities=11% Similarity=0.081 Sum_probs=105.3
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCC-cCcc--------cccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPS-KNGS--------SNFGTHLEINALKIHTYLTMYRNDLALKEL 119 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~-~~e~--------~~~~~~lE~~al~v~~~l~~~r~d~Aek~l 119 (265)
.+|.++..|+|+.+++. +-..+.... .... ......-+++..++.+|...|++++|.+.+
T Consensus 10 ~a~~l~~~~~y~eA~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~ 78 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQV-----------YLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFI 78 (434)
T ss_dssp HHHHHHHHTCHHHHHHH-----------HHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHH-----------HHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45888999999877762 112222111 1111 001223356788899999999999999999
Q ss_pred HHHHccCC---CcHHHHHHHHHHHHH-hccccHHHHHHHHHHHHhhcC---C---CHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3174 120 KVMQDKDE---DHTLTQLCSAWVHIA-NNVDKLNEAFYTLQDLIDKYG---S---TPMLVNAQVAVLIAQDKYEEAWDLL 189 (265)
Q Consensus 120 ~~~~~~~~---d~~l~~la~a~v~l~-~g~~~~~eA~~~~~el~~~~p---~---t~~lLn~~A~~~~~~g~~eEAe~~l 189 (265)
++++.+.+ ++....+....++.. ...+++++|..++++.....+ . -..+...+|.++..+|+|++|..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 79 PHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 99877532 222222222222222 345889999999999765432 2 2447888999999999999999999
Q ss_pred HHHhcC---------CHHHHHHHHHHHHHcCCCCcc
Q psy3174 190 QDTAGD---------SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 190 ~~al~~---------~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++++.. ..+++.+++.++..+|+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHH
Confidence 998764 234778999999999987654
No 197
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=8e-05 Score=60.54 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhhc-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3174 112 NDLALKELKVMQDKDEDHTLTQLCSAWVHIANN-VDKLNEAFYTLQDLIDKY-G-STPMLVNAQVAVLIAQDKYEEAWDL 188 (265)
Q Consensus 112 ~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g-~~~~~eA~~~~~el~~~~-p-~t~~lLn~~A~~~~~~g~~eEAe~~ 188 (265)
+..+++.|.+..+.++.++-++.-.||.-+.+. .+..+++..+++++.... | .....+..+|+.++++|+|++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 556888899988888888888888888854432 256789999999999987 6 4567899999999999999999999
Q ss_pred HHHHhcCCHH
Q psy3174 189 LQDTAGDSED 198 (265)
Q Consensus 189 l~~al~~~pd 198 (265)
+.++++.+|+
T Consensus 94 ~~~lL~ieP~ 103 (152)
T 1pc2_A 94 VRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCCC
Confidence 9999998664
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=0.00054 Score=66.47 Aligned_cols=124 Identities=10% Similarity=-0.043 Sum_probs=103.3
Q ss_pred ccCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 91 NFGTHLEINALKIHTYLTMY--RNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~--r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
..|++..+..-+.-++..++ ++++|.+.+.++++.+|.+.-+-.--+|+-- .-+.++++++..++++.+.+|....+
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~-~l~~~~~~el~~~~~~I~~~p~n~sa 180 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSS 180 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHH-HcCCChHHHHHHHHHHHHHCCCCccH
Confidence 45889999999999999999 6699999999999999999833333333311 22238999999999999999999999
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCc
Q psy3174 169 VNAQVAVLIAQ--------------DKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 169 Ln~~A~~~~~~--------------g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~e 215 (265)
++..+.++..+ +++++|.+++.+|+.. |+....++..++...|+..+
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999885 6789999999999988 55588899999988888655
No 199
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.68 E-value=0.001 Score=70.84 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
.+.-+..++..|..+|+|+||..+++.++.+ |....-.++.++..
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 3445667788899999999999999999887 33333344444433
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.65 E-value=0.00028 Score=52.05 Aligned_cols=48 Identities=10% Similarity=-0.005 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 148 LNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
..+|..++++.....|+.+..+..+|..++++|+|++|...++++++.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444444444444444455555555555555555554444
No 201
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.62 E-value=7.5e-05 Score=70.69 Aligned_cols=178 Identities=10% Similarity=0.075 Sum_probs=78.3
Q ss_pred hhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccc-cCCCHH
Q psy3174 19 YYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSN-FGTHLE 97 (265)
Q Consensus 19 fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~-~~~~lE 97 (265)
--.|.|.+++...+......++...... ..-+|-.+|+...+.+-+.+|...++..+++.+...+..+... +-....
T Consensus 72 e~~g~~EeAi~yl~~ark~~~~~~i~~~--Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~ 149 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 149 (449)
T ss_dssp ---------------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHTT
T ss_pred HhCCCHHHHHHHHHHHHHhCccchhHHH--HHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 3457777777765433332222222222 2356666788776555445555556777777776666554421 112223
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLI 177 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~ 177 (265)
....++.++..+|+++.|.+.++++ +...+-..+..+.+ ..+.++.|......+. .+|+. +-.+..+|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA---~~~~~Wk~v~~aCv----~~~ef~lA~~~~l~L~-~~ad~---l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACV----DGKEFRLAQMCGLHIV-VHADE---LEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHHHH----HTTCHHHHHHTTTTTT-TCHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc---CCchhHHHHHHHHH----HcCcHHHHHHHHHHHH-hCHhh---HHHHHHHHH
Confidence 4555566999999999999999998 21122223333344 3367888855555433 44433 445667899
Q ss_pred HcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 178 AQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 178 ~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
.+|+|+||..++++++.. |-....-++.++..
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999987 55555555555443
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.59 E-value=0.00043 Score=51.04 Aligned_cols=72 Identities=17% Similarity=0.013 Sum_probs=63.1
Q ss_pred cCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Q psy3174 92 FGTHLEINALKIHTYLTMYR---NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r---~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t 165 (265)
.|++++.++..++++...+. .+.|++.++++++.+|+++-+.+.++.+.+.. |+|++|+..++++.+..|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~--g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFIS--FRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence 37899999999999976666 79999999999999999998877777776665 78999999999999888763
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.53 E-value=0.0037 Score=60.52 Aligned_cols=122 Identities=6% Similarity=-0.098 Sum_probs=104.7
Q ss_pred cCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 92 FGTHLEINALKIHTYLTMYR----------NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r----------~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
.|++..+...+..++..+++ +++|.+.+.++++.+|++.-+-.--+|+--..+..++++|...++++.+.
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 47888999999999999999 99999999999999999995444444553324323679999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 162 YGSTPMLVNAQVAVLIAQD-KYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g-~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
+|.+...++..+++....| ++++|.+...++++. |.....+.+.+...+++.
T Consensus 139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 9999999999999999999 999999999999998 666889999998887654
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.52 E-value=0.0015 Score=69.54 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=19.0
Q ss_pred hHHHHHhhhhccHHHHHHHHhhcc
Q psy3174 12 LFDVRNSYYLGNYQQCIKEGQRLK 35 (265)
Q Consensus 12 lf~vr~~fy~G~Y~~~i~~~~~~~ 35 (265)
=+.||-..+.|.|.++++-.++..
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv 1012 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV 1012 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 467788889999999998876654
No 205
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.48 E-value=0.0019 Score=57.92 Aligned_cols=121 Identities=7% Similarity=-0.023 Sum_probs=103.1
Q ss_pred cCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHccCCCcHHHHHHHHHHH----HHhc-cccHHHHHHHHHHHHhhcCC
Q psy3174 92 FGTHLEINALKIHTYLTMY--RNDLALKELKVMQDKDEDHTLTQLCSAWVH----IANN-VDKLNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~--r~d~Aek~l~~~~~~~~d~~l~~la~a~v~----l~~g-~~~~~eA~~~~~el~~~~p~ 164 (265)
.|++..+...+..++..++ ++++|.+.+..++..+|++.-+=.--.|+- -..+ .+++++++.+++++.+.+|.
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 4678899999999999999 999999999999999999985444444442 1111 16899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHH--HHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q psy3174 165 TPMLVNAQVAVLIAQDKYE--EAWDLLQDTAGD---SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~e--EAe~~l~~al~~---~pdtl~nl~~~~~~~Gk 212 (265)
+..+++..+++....|+++ ++.+.+.++++. |-....+...+...+|+
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999 999999999988 55578888888888886
No 206
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.37 E-value=0.00024 Score=67.19 Aligned_cols=167 Identities=10% Similarity=0.040 Sum_probs=39.2
Q ss_pred hhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhc-CChHHHHHHHHHHHhcCCCcCcc-c-------
Q psy3174 20 YLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEK-LPEELSCIKVLAEYLSIPSKNGS-S------- 90 (265)
Q Consensus 20 y~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei-~~~~l~~~~~~A~~l~~~~~~e~-~------- 90 (265)
-.|+.+.|++.+++++ .|+ .-..++.+++.+|++..+++-. ..+....+.....-....+..+. -
T Consensus 15 ~~~~ld~A~~fae~~~--~~~----vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--EPA----VWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--ChH----HHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3566777777766552 222 1223467777888777666544 22221122221111111111111 0
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHH
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPM 167 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~ 167 (265)
+...+...-..++.+|.++||++.+++.++. |+. .+|.++. ...|+|++|..+|..+ .
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~------~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~ 149 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFING-----PNN------AHIQQVGDRCYDEKMYDAAKLLYNNV--------S 149 (449)
T ss_dssp --------------------CHHHHTTTTTC-----C----------------------CTTTHHHHHHHT--------T
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH------HHHHHHHHHHHHcCCHHHHHHHHHHh--------h
Confidence 0011123334455566666666666655532 111 1444443 2235666666666654 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk~ 213 (265)
.++.+|.|+.++|+|++|.+.++++ .+|.+.-..+.++...|+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcH
Confidence 4555666666666666666666666 2555555554555555543
No 207
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.33 E-value=0.023 Score=54.06 Aligned_cols=107 Identities=9% Similarity=-0.015 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccC--CCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CCCHHHHH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKD--EDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY-GSTPMLVN 170 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~--~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~-p~t~~lLn 170 (265)
-+.-....++..|.+.|+++.|.+.+++|.+.+ || +.+..+. +......|++++|..+|+++.+.. ..+...++
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~l--I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPA--LFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHH--HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHH--HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 356677788899999999999999999998853 44 4333222 111123488999999999998763 35778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcC----CHHHHHHH
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAGD----SEDTLINN 203 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~~----~pdtl~nl 203 (265)
.+-.++.+.|++++|..++++--+. ++.|...+
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 9999999999999999999987664 55554333
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.30 E-value=0.0017 Score=48.17 Aligned_cols=63 Identities=6% Similarity=-0.092 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Q psy3174 146 DKLNEAFYTLQDLIDKY-------GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAG 208 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~-------p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~ 208 (265)
++|..|..-|+++.... +..+.+++.+|.|+.++|++++|...+++++.. |+.++.|+..+-.
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 34555555555444332 234567888899999999999999999999877 6667777764444
No 209
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.29 E-value=0.0049 Score=56.45 Aligned_cols=117 Identities=6% Similarity=-0.033 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH----hccccHHHHHHHHHHHHhhcCCCHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA----NNVDKLNEAFYTLQDLIDKYGSTPML 168 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~----~g~~~~~eA~~~~~el~~~~p~t~~l 168 (265)
++-.+++-..-.+.....+.+.|.+.+.+++.++|++. .+|..-. ..+..+++++.+++++...+|.+..+
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y-----taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY-----TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence 33445555555566667778899999999999999998 4555432 22236999999999999999999999
Q ss_pred HHHHHHHHHHc-C-CHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC
Q psy3174 169 VNAQVAVLIAQ-D-KYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGN 214 (265)
Q Consensus 169 Ln~~A~~~~~~-g-~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ 214 (265)
++..+++.... + +++++..++.++++. |..+..+...+...+|+..
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 99999999998 8 999999999999998 6668889999999888876
No 210
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.22 E-value=0.01 Score=56.57 Aligned_cols=104 Identities=10% Similarity=0.014 Sum_probs=82.0
Q ss_pred CChHHHHHHHHHHHcc--CCCcH-HHHHHHHHHHHHhccccHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHcCCHHHH
Q psy3174 110 YRNDLALKELKVMQDK--DEDHT-LTQLCSAWVHIANNVDKLNEAFYTLQDLIDK-YGSTPMLVNAQVAVLIAQDKYEEA 185 (265)
Q Consensus 110 ~r~d~Aek~l~~~~~~--~~d~~-l~~la~a~v~l~~g~~~~~eA~~~~~el~~~-~p~t~~lLn~~A~~~~~~g~~eEA 185 (265)
++++.|.++|.+|.+. .||.. .+.+..++. ..|++++|+.+|+++... ...+...+|.+-..+.+.|++++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~----~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV----AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 3478899999999885 34433 222223333 348899999999999876 345778899999999999999999
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHcCCCCccC
Q psy3174 186 WDLLQDTAGD----SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 186 e~~l~~al~~----~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
..++.+..+. +..|...++.++...|+.+++.
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~ 195 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVY 195 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHH
Confidence 9999998877 6668889999999999987764
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.0063 Score=56.16 Aligned_cols=125 Identities=12% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH--hcc----ccHHHHHHHHHHH--H
Q psy3174 93 GTHLEIN--ALKIHTYLTMYR---NDLALKELKVMQDKDEDHTLTQLCSAWVHIA--NNV----DKLNEAFYTLQDL--I 159 (265)
Q Consensus 93 ~~~lE~~--al~v~~~l~~~r---~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~--~g~----~~~~eA~~~~~el--~ 159 (265)
|.++++. +++++-++..+. +..|...|.++++++|+.....-..+|..+. ..+ ........-++.. .
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 4555543 334444444433 4678888888888888876554433333322 111 1111111111111 1
Q ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHH--HHHHHHHHHcCCCCccC
Q psy3174 160 DKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTL--INNMVTAGRLGKGNEMS 217 (265)
Q Consensus 160 ~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl--~nl~~~~~~~Gk~~ea~ 217 (265)
...|.++..+..+|.++..+|++++|...+++|+.++|..+ .-++.++...|++.++.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34567788888888888888888888888888888855533 46677888888877654
No 212
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.07 E-value=0.0012 Score=51.79 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=73.2
Q ss_pred HcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhc-C-CCHHHHHHHHHHHHHcCCHHH
Q psy3174 108 TMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKY-G-STPMLVNAQVAVLIAQDKYEE 184 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~-p-~t~~lLn~~A~~~~~~g~~eE 184 (265)
....+..+++.|.+....++.+.-++.-.||.-+.+.. ...++++.+++++.... | ..-..+..+|+.++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 33446778888998888888888888888888544322 55667999999998886 5 355688999999999999999
Q ss_pred HHHHHHHHhcCCHH
Q psy3174 185 AWDLLQDTAGDSED 198 (265)
Q Consensus 185 Ae~~l~~al~~~pd 198 (265)
|..++...|+.+|+
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998554
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.98 E-value=0.0045 Score=55.44 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=85.8
Q ss_pred cCCCHHHHHHHHHHHHH---c--C------ChHHHHHHHHHHHccCCC--cHHHHHHHHHHHHH---hccccHHHHHHHH
Q psy3174 92 FGTHLEINALKIHTYLT---M--Y------RNDLALKELKVMQDKDED--HTLTQLCSAWVHIA---NNVDKLNEAFYTL 155 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~---~--~------r~d~Aek~l~~~~~~~~d--~~l~~la~a~v~l~---~g~~~~~eA~~~~ 155 (265)
.+++.|.++..+.+... . | ....|+..+++++++||+ +--+....+-++.. -++|..++|..+|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 37788888888877754 2 2 256788899999999998 43333333333322 3458999999999
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCC----HH-HHHHHH
Q psy3174 156 QDLIDKYGS-TPMLVNAQVAVLIA-QDKYEEAWDLLQDTAGDS----ED-TLINNM 204 (265)
Q Consensus 156 ~el~~~~p~-t~~lLn~~A~~~~~-~g~~eEAe~~l~~al~~~----pd-tl~nl~ 204 (265)
++.....|. .+....-.|.-++. +|++++|...+++|+..+ |+ .++|.+
T Consensus 228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999996 58899999999988 599999999999999983 43 455543
No 214
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.94 E-value=0.012 Score=53.46 Aligned_cols=123 Identities=6% Similarity=-0.101 Sum_probs=99.8
Q ss_pred ccCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 91 NFGTHLEINALKIHTYLTMYR----------NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r----------~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
..|++..+...+..++..+++ ++.+.+.+..++..+|.+.-+=.--.|+--..|...+++++.++.++.+
T Consensus 59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~ 138 (331)
T 3dss_A 59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 138 (331)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 459999999999999988877 6788888889999999998544444455332332358899999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCC
Q psy3174 161 KYGSTPMLVNAQVAVLIAQDK-YEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 161 ~~p~t~~lLn~~A~~~~~~g~-~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~ 213 (265)
.+|.+..+++..+++....|+ ++++.+...++++. |.....+.+.+...++..
T Consensus 139 ~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999998 68999999999987 556888888888888654
No 215
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.85 E-value=0.025 Score=51.22 Aligned_cols=88 Identities=10% Similarity=-0.056 Sum_probs=73.0
Q ss_pred ccCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hcccc-HHHHHHHHHHHHhhcCC
Q psy3174 91 NFGTHLEINALKIHTYLTMYR--NDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDK-LNEAFYTLQDLIDKYGS 164 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r--~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~-~~eA~~~~~el~~~~p~ 164 (265)
.+|++..+..-+..++..+++ ++.+...+.++++.+|.+. .||.+-. ..-++ +++++..++++...+|.
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy-----~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF-----HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 469999999999999999995 8999999999999999998 5555433 12245 68999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHH
Q psy3174 165 TPMLVNAQVAVLIAQDKYE 183 (265)
Q Consensus 165 t~~lLn~~A~~~~~~g~~e 183 (265)
+..+++..+.+....+...
T Consensus 178 N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHHhhhcc
Confidence 9999999999888776543
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.68 E-value=0.0084 Score=55.32 Aligned_cols=103 Identities=12% Similarity=-0.060 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHH--HHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 93 GTHLEINALKIHTYLTMY--------RNDLALKELKV--MQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~--------r~d~Aek~l~~--~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
|+...+.+.++.+|.... +.......++. ....+|++..+..+.+.+.+.. |++++|...++++....
T Consensus 230 P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 230 PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK--GKTDESYQAINTGIDLE 307 (372)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhcC
Confidence 566666666666664311 11122223332 2346788888888888877766 78999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH
Q psy3174 163 GSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSED 198 (265)
Q Consensus 163 p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd 198 (265)
| +...+..+|+++...|++++|.+.+.+|+.++|.
T Consensus 308 ~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 308 M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6 4677789999999999999999999999999554
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.67 E-value=0.031 Score=41.10 Aligned_cols=78 Identities=12% Similarity=-0.124 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-------CCc--HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKD-------EDH--TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGST 165 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~-------~d~--~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t 165 (265)
+.+--+.++..+..+++++.|..-|+.+++.. .+. +..+|+.++. ..|++++|..+++++....|..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~----~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY----QQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH----HccCHHHHHHHHHHHHhcCCCC
Confidence 44555678999999999999999999998842 222 2334444433 3378999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy3174 166 PMLVNAQVAVL 176 (265)
Q Consensus 166 ~~lLn~~A~~~ 176 (265)
+.+++++++.-
T Consensus 80 ~~~~~n~~~~~ 90 (104)
T 2v5f_A 80 QRANGNLKYFE 90 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhhHHHHH
Confidence 98888876443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.62 E-value=0.0049 Score=49.89 Aligned_cols=83 Identities=11% Similarity=-0.042 Sum_probs=69.4
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhcCC-H----HHHHHHHHHHHHcCCCCccC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD---KYEEAWDLLQDTAGDS-E----DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g---~~eEAe~~l~~al~~~-p----dtl~nl~~~~~~~Gk~~ea~ 217 (265)
+.++.+..-|++..+..|.++.+....|||+++-. ++.++..+|++.+..+ | |.++|+++.+..+|+..++.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34566777788877777789999999999999988 7779999999999885 6 48999999999999988765
Q ss_pred ----------CCChhhhcHHH
Q psy3174 218 ----------VSPPFLFRSDE 228 (265)
Q Consensus 218 ----------p~hp~~~~~~~ 228 (265)
|+|+-+..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHH
Confidence 99987776644
No 219
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.23 E-value=0.049 Score=56.45 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc----CCCcHHHHHHH--HHHHHHhccccHHHHHHHHHHHHhh-cCCCHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDK----DEDHTLTQLCS--AWVHIANNVDKLNEAFYTLQDLIDK-YGSTPMLVNA 171 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~----~~d~~l~~la~--a~v~l~~g~~~~~eA~~~~~el~~~-~p~t~~lLn~ 171 (265)
+..++..|++.|++++|.+.+..|.+. -..+++|...+ +|. ..|+.++|..+|+++.+. ...+...+|.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glc----k~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA----RQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHH----hCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 556677999999999999999887653 13445444333 333 238899999999999877 3467888999
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHhcC--CHHHHH
Q psy3174 172 QVAVLIAQDKY-EEAWDLLQDTAGD--SEDTLI 201 (265)
Q Consensus 172 ~A~~~~~~g~~-eEAe~~l~~al~~--~pdtl~ 201 (265)
+-.++.+.|+. ++|..++.+-.+. .||+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vt 238 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhh
Confidence 98899999985 7899999998877 888553
No 220
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.17 E-value=0.079 Score=52.47 Aligned_cols=33 Identities=6% Similarity=-0.129 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~ 125 (265)
|.+..+....+......|+++.|+++|.++++.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666666666677777777777777777777653
No 221
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.15 E-value=0.027 Score=44.48 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=65.6
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 115 ALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
.++.|.+=. -+..++-++.--||.-+.+.. +..++++.+++++....|. .-..+..+|+.+.++|+|++|..+....
T Consensus 26 l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 26 LRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344454432 466678888888998555433 5677999999999988884 5668999999999999999999999999
Q ss_pred hcCCHH
Q psy3174 193 AGDSED 198 (265)
Q Consensus 193 l~~~pd 198 (265)
|+..|+
T Consensus 105 L~~eP~ 110 (134)
T 3o48_A 105 FEHERN 110 (134)
T ss_dssp HTTCTT
T ss_pred HhhCCC
Confidence 998655
No 222
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.00 E-value=0.072 Score=52.77 Aligned_cols=129 Identities=10% Similarity=0.024 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcc-CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDK-DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAV 175 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~-~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~ 175 (265)
......+....+.|..+.|+++|.++++. .+-....-+..+.+.... +++++.|..+|+...+.+|.++..++..+..
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 35566667777789999999999999876 332222222223332222 3558999999999999999999998888888
Q ss_pred HHHcCCHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCccC----------CCChhhhcH
Q psy3174 176 LIAQDKYEEAWDLLQDTAGDSE------DTLINNMVTAGRLGKGNEMS----------VSPPFLFRS 226 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~~p------dtl~nl~~~~~~~Gk~~ea~----------p~hp~~~~~ 226 (265)
....|+.+.|..++++|+...| +++...+..-...|....+. |+.|-+.-+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 8999999999999999999833 24445566666677664322 777644444
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.97 E-value=0.056 Score=43.21 Aligned_cols=83 Identities=10% Similarity=0.024 Sum_probs=64.2
Q ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3174 115 ALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKYGS-TPMLVNAQVAVLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 115 Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~p~-t~~lLn~~A~~~~~~g~~eEAe~~l~~a 192 (265)
.++.|.+-.. +..++-++.--||.-+.+.. +..++++.+++++....|. .-..+..+|+.+.++|+|.+|..+....
T Consensus 25 lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 25 LRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444444312 35677777888898555332 6678999999999999885 5558999999999999999999999999
Q ss_pred hcCCHH
Q psy3174 193 AGDSED 198 (265)
Q Consensus 193 l~~~pd 198 (265)
|+..|+
T Consensus 104 L~~eP~ 109 (144)
T 1y8m_A 104 FEHERN 109 (144)
T ss_dssp HHTCCC
T ss_pred HhcCCC
Confidence 998554
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.66 E-value=0.3 Score=39.51 Aligned_cols=121 Identities=9% Similarity=-0.025 Sum_probs=93.9
Q ss_pred CCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHccCCCcH---HHHHHHHHHHHH--hccccHHHHHHHHHHHHhh
Q psy3174 93 GTHLEINALKIHTYLTMYRN------DLALKELKVMQDKDEDHT---LTQLCSAWVHIA--NNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~------d~Aek~l~~~~~~~~d~~---l~~la~a~v~l~--~g~~~~~eA~~~~~el~~~ 161 (265)
|.++|........+.+.|++ +.-...|.++...-|+.. -..-+--||..+ ..-+..++|..+|+.+...
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67888888888888888998 887888988887555432 112334455555 3336788999999998777
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC
Q psy3174 162 YGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 162 ~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~ 213 (265)
|.....+...-|--.++||+...|..+|.+|+.+ .|--+...+..-...||+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQKK 143 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCCC
Confidence 7777889999999999999999999999999999 555666667777788886
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.73 E-value=0.41 Score=39.13 Aligned_cols=113 Identities=5% Similarity=-0.105 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---CCCc-HHHHHHHHHHHHH---hccccHHHHHHHHHHHHhh-----
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDK---DEDH-TLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDK----- 161 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d~-~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~----- 161 (265)
++.=++...++.++..+-|+-|+-....++.. ++|- +..+-+++.+.++ -++++|..|...|+++.+.
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 34445666778888888899888877775553 3443 2222222222222 3568899999999996421
Q ss_pred -cCC-------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCHHHHHHHHHH
Q psy3174 162 -YGS-------------------TPMLVNAQVAVLIAQDKYEEAWDLLQDTAG--DSEDTLINNMVT 206 (265)
Q Consensus 162 -~p~-------------------t~~lLn~~A~~~~~~g~~eEAe~~l~~al~--~~pdtl~nl~~~ 206 (265)
.+. ...+-.-+|.|++.+|++.+|...++..=. +.|.+-.-|+.+
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 111 124778899999999999999999876533 377765555544
No 226
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.53 E-value=1.8 Score=39.94 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=104.3
Q ss_pred HHHHHHHHHcccChhHHhhhc-----------CChHHHHHHHHHHHhcCCCcCcc--------------cccCCCHH--H
Q psy3174 46 DFYVCRSYLAQKKYKVVLEEK-----------LPEELSCIKVLAEYLSIPSKNGS--------------SNFGTHLE--I 98 (265)
Q Consensus 46 ~~~~~Raylalg~~~~~l~ei-----------~~~~l~~~~~~A~~l~~~~~~e~--------------~~~~~~lE--~ 98 (265)
..-+.+.|..+|+++.+.+-| ..-..+.++.+.+++..-..... .+....+- +
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467788888887554444 12225567788877765332211 11111222 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHc----cCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhc----CC---C
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQD----KDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKY----GS---T 165 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~----~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~----p~---t 165 (265)
-.-++..|+..|++..|.+.+.++.+ .|+...+. .+.++-+.. ..+++..+...+....... ++ .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~--~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH--ALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH--HhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 23567899999999999998888877 34333333 233333333 3478888888888864321 21 2
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHhcC-----CH---HHHHHHHHHHHHcCCCCc
Q psy3174 166 PMLVNAQVAVLI-AQDKYEEAWDLLQDTAGD-----SE---DTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 166 ~~lLn~~A~~~~-~~g~~eEAe~~l~~al~~-----~p---dtl~nl~~~~~~~Gk~~e 215 (265)
..+.-.-|..|+ ..++|.+|...+-++++. .| +++..++.|...++...+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~e 238 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 224566788899 899999999999999754 44 356677777777776433
No 227
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.40 E-value=1.4 Score=41.45 Aligned_cols=121 Identities=11% Similarity=0.001 Sum_probs=82.2
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHH-----------------------------------H
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLC-----------------------------------S 136 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la-----------------------------------~ 136 (265)
.|.+.++....++.+...|+++.|.+.|.+++.. |.+...-++ .
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHH
Confidence 4788999999999999999999999999999998 876432211 1
Q ss_pred HHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q psy3174 137 AWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD-KYEEAWDLLQDTAGD---SEDTLINNMVTAGR 209 (265)
Q Consensus 137 a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g-~~eEAe~~l~~al~~---~pdtl~nl~~~~~~ 209 (265)
.|+..+ ...+.++.|..+|+.+ ...+.+..++...|......| +.+.|..+++.+++. +|+.....+-....
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 233322 1234477788888887 332245556655566666566 488888888888875 56665555555556
Q ss_pred cCCCC
Q psy3174 210 LGKGN 214 (265)
Q Consensus 210 ~Gk~~ 214 (265)
.|...
T Consensus 367 ~~~~~ 371 (493)
T 2uy1_A 367 IGDEE 371 (493)
T ss_dssp HTCHH
T ss_pred cCCHH
Confidence 66543
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.88 E-value=0.76 Score=35.72 Aligned_cols=83 Identities=10% Similarity=-0.052 Sum_probs=68.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhcCC-HH----HHHHHHHHHHHcCCCCccC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEE---AWDLLQDTAGDS-ED----TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eE---Ae~~l~~al~~~-pd----tl~nl~~~~~~~Gk~~ea~ 217 (265)
+.+..+..-|++.....+.++......||++++-....+ +..+|++.+..+ |+ .++.+++.+..+|+..++.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 446667777777777777889999999999999888777 899999998884 73 8899999999999987764
Q ss_pred ----------CCChhhhcHHH
Q psy3174 218 ----------VSPPFLFRSDE 228 (265)
Q Consensus 218 ----------p~hp~~~~~~~ 228 (265)
|+|+=+..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHH
Confidence 98887776644
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.61 E-value=0.16 Score=41.58 Aligned_cols=76 Identities=9% Similarity=0.023 Sum_probs=56.9
Q ss_pred HhccccHHHHHHHHHHHHhh---cCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CH---------
Q psy3174 142 ANNVDKLNEAFYTLQDLIDK---YGS--TP----MLVNAQVAVLIAQDKYEEAWDLLQDTAGD------SE--------- 197 (265)
Q Consensus 142 ~~g~~~~~eA~~~~~el~~~---~p~--t~----~lLn~~A~~~~~~g~~eEAe~~l~~al~~------~p--------- 197 (265)
....+-|+.|..+..-+... .|+ +| .++..+|.++..+|+|..|+..+++|+.. ++
T Consensus 30 L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ 109 (167)
T 3ffl_A 30 MAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNS 109 (167)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 33447899999999887543 233 22 27889999999999999999999999875 32
Q ss_pred -------------HHHHHHHHHHHHcCCCCccC
Q psy3174 198 -------------DTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 198 -------------dtl~nl~~~~~~~Gk~~ea~ 217 (265)
|+-+..+.|+..+|++.+++
T Consensus 110 ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 110 ASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 45567788888888877654
No 230
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.93 E-value=7.8 Score=35.92 Aligned_cols=236 Identities=13% Similarity=0.023 Sum_probs=129.2
Q ss_pred cchhHHHHHhhhhccHHHHHHHH---hhcccCChh-h-hhhHHHHHHHHHHcccChhHHhhhc-----CC---hH--HHH
Q psy3174 9 VDELFDVRNSYYLGNYQQCIKEG---QRLKATDPK-V-LLEKDFYVCRSYLAQKKYKVVLEEK-----LP---EE--LSC 73 (265)
Q Consensus 9 ~delf~vr~~fy~G~Y~~~i~~~---~~~~~~~~~-~-~~e~~~~~~Raylalg~~~~~l~ei-----~~---~~--l~~ 73 (265)
+|+.|.-=...-.|+++.|++.. ++-.....+ . ......-+.+.+...|+++...+.+ .+ +. ...
T Consensus 17 ~~~~~~~~~~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~ 96 (445)
T 4b4t_P 17 LKEEFPKIDSLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYM 96 (445)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44444333334568999999874 322211111 1 1122223345566667776443322 11 11 223
Q ss_pred HHHHHHHhcCCCcC--cc-------------cc-cCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHc----cCCCc--
Q psy3174 74 IKVLAEYLSIPSKN--GS-------------SN-FGT--HLEINALKIHTYLTMYRNDLALKELKVMQD----KDEDH-- 129 (265)
Q Consensus 74 ~~~~A~~l~~~~~~--e~-------------~~-~~~--~lE~~al~v~~~l~~~r~d~Aek~l~~~~~----~~~d~-- 129 (265)
++..-+|+...... +. +. +.+ ..-+...++.+|...|++++|.+.+..++. ..+..
T Consensus 97 V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k 176 (445)
T 4b4t_P 97 IQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK 176 (445)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 55566666422211 10 11 111 122446778999999999999999999864 22322
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---cCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CH
Q psy3174 130 TLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK---YGSTPM----LVNAQVAVLIAQDKYEEAWDLLQDTAGD-----SE 197 (265)
Q Consensus 130 ~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~---~p~t~~----lLn~~A~~~~~~g~~eEAe~~l~~al~~-----~p 197 (265)
+-..+-+..+.+.. +++..|..++.++..+ .+..+. ....+|..++..++|-+|-..+.++++. +|
T Consensus 177 ve~~l~q~rl~l~~--~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 177 IQFILEQMELSILK--GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence 22345555565555 7899999999997532 222332 4678899999999999999999999875 66
Q ss_pred H----HHHHHHHHHHHcCCCCccC---------CCChhhhcHHHHHHH--------HHHHHhhccccCCC
Q psy3174 198 D----TLINNMVTAGRLGKGNEMS---------VSPPFLFRSDETTAT--------LDACGLQSNSESTP 246 (265)
Q Consensus 198 d----tl~nl~~~~~~~Gk~~ea~---------p~hp~~~~~~~~~~~--------FD~~~~~~~~~~~~ 246 (265)
. ++.+.+.|....+...+.. +..+.+..+...... |+.+...|.+.+..
T Consensus 255 ~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 255 AKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 5 3344444444444333221 333333344443333 57777788766544
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.14 E-value=0.4 Score=42.82 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=65.4
Q ss_pred cCCCcHH--HHHHHHHHHHHh---cc----ccHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q psy3174 125 KDEDHTL--TQLCSAWVHIAN---NV----DKLNEAFYTLQDLIDKYGS--TPMLVNAQVAVLIAQ-----DKYEEAWDL 188 (265)
Q Consensus 125 ~~~d~~l--~~la~a~v~l~~---g~----~~~~eA~~~~~el~~~~p~--t~~lLn~~A~~~~~~-----g~~eEAe~~ 188 (265)
.+++++- .-.+.+|...+. |+ +...+|..+++++.+..|. ....+..+|+.|.+. |+.++|+.+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 4555543 334444544332 22 4567899999999999998 566899999999995 999999999
Q ss_pred HHHHhcCC----HHHHHHHHHHHHHc-CCCCc
Q psy3174 189 LQDTAGDS----EDTLINNMVTAGRL-GKGNE 215 (265)
Q Consensus 189 l~~al~~~----pdtl~nl~~~~~~~-Gk~~e 215 (265)
+++|++++ +++.+-.+..+... |+..+
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 99999994 44556666666564 55443
No 232
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=91.06 E-value=1.9 Score=40.45 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ 179 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~ 179 (265)
...+..+...+.++.|+++|.++ ...+...-.-+..|.+....+ +.++.|..+|+.....+|+++..+...+......
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~-~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT-GSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 33444555677899999999999 322222211222233322232 2599999999999999999888776677777889
Q ss_pred CCHHHHHHHHHHHh
Q psy3174 180 DKYEEAWDLLQDTA 193 (265)
Q Consensus 180 g~~eEAe~~l~~al 193 (265)
|+.+.|..++.++.
T Consensus 368 ~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 368 GDEENARALFKRLE 381 (493)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988873
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.56 E-value=3.5 Score=39.79 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=56.3
Q ss_pred HHHHHhhhhccHHHHHH-HHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccc
Q psy3174 13 FDVRNSYYLGNYQQCIK-EGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSN 91 (265)
Q Consensus 13 f~vr~~fy~G~Y~~~i~-~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~ 91 (265)
+..+.....|+|..|.+ .+..+ .+...+ -...|.+..+|..+.++.-...|..+ +....++-......+..+
T Consensus 604 ~~~~~~~~~~~~~~a~~~~l~~i---~~~~~~---~~~~~~l~~~~~~~~a~~~~~~~~~~-f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 604 LEFQTLTLRGEIEEAIENVLPNV---EGKDSL---TKIARFLEGQEYYEEALNISPDQDQK-FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHTGGGC---CCHHHH---HHHHHHHHHTTCHHHHHHHCCCHHHH-HHHHHHHTCHHHHHHHHT
T ss_pred HHHhHHHHhCCHHHHHHHHHhcC---CchHHH---HHHHHHHHhCCChHHheecCCCcchh-eehhhhcCCHHHHHHHHH
Confidence 44455566778877766 33211 101111 23346666777777666544333322 111111100000001123
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q psy3174 92 FGTHLEINALKIHTYLTMYRNDLALKELKVMQD 124 (265)
Q Consensus 92 ~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~ 124 (265)
..++....-.+++.++..++++.|++.|.++..
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 345677888888899999999999999988744
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.53 E-value=1.1 Score=44.88 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=64.5
Q ss_pred hcc-HHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcC-------CCcCccc--
Q psy3174 21 LGN-YQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSI-------PSKNGSS-- 90 (265)
Q Consensus 21 ~G~-Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~-------~~~~e~~-- 90 (265)
+|+ |+.|++.++++....|.. .++.+++++..-... ...++.+++++.+-++. ....+..
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~----~~~~~~~~i~~~~~~------~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIH----DIYYKTAMITILDHI------ETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHTTC------GGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 455 577888887777777765 355556666532211 12234455555544321 1111110
Q ss_pred -ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHH--HHHHHHHHHHhccccHHHHHHHHHH
Q psy3174 91 -NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLT--QLCSAWVHIANNVDKLNEAFYTLQD 157 (265)
Q Consensus 91 -~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~--~la~a~v~l~~g~~~~~eA~~~~~e 157 (265)
..+-.-+++..++.-++..||++.|.+.-+++....|++-.+ .||++|+.+ |+++.|+....-
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l----~d~e~ALLtLNS 396 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKK----EEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh----ccHHHHHHHHhc
Confidence 012233455566666666677777777777666666666543 444444432 446666655443
No 235
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.60 E-value=2.3 Score=44.18 Aligned_cols=71 Identities=18% Similarity=0.063 Sum_probs=59.2
Q ss_pred ccccHHHHHHHHHHHHh----hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHH--HHHHHHHHHHHcCCCC
Q psy3174 144 NVDKLNEAFYTLQDLID----KYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SED--TLINNMVTAGRLGKGN 214 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~----~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pd--tl~nl~~~~~~~Gk~~ 214 (265)
..|++++|+.+|+++.. ....+...+|.+-..+.+.|+++||.+++.+-.+. .|| |...+|.++...|+..
T Consensus 139 K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~ 217 (1134)
T 3spa_A 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217 (1134)
T ss_dssp HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCH
T ss_pred hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcH
Confidence 44899999999988753 23467889999999999999999999999999887 666 6677888899999863
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.47 E-value=2.1 Score=42.91 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=77.9
Q ss_pred cCC-hHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhh------------------cCCCHHH
Q psy3174 109 MYR-NDLALKELKVMQDKDEDHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDK------------------YGSTPML 168 (265)
Q Consensus 109 ~~r-~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~------------------~p~t~~l 168 (265)
.+| +|.|...+++..+.+|... ..++.+++++.... .+=-+|..+..+..+. .|.+..+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 455 6999999999988777654 34455666654322 2333566666554421 1112347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCccC
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea~ 217 (265)
|+-+|--++..|+|+-|..+-++|.+. .-.+.+.|+.|+..+|+.+.|+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence 888899899999999999999999887 5558999999999999998876
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.94 E-value=6.9 Score=37.66 Aligned_cols=137 Identities=11% Similarity=0.015 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHcccChhHHhh-hcCChH-HHHHHHHHHHhcCCCcCcc-cccCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy3174 43 LEKDFYVCRSYLAQKKYKVVLE-EKLPEE-LSCIKVLAEYLSIPSKNGS-SNFGTHLEINALKIHTYLTMYRNDLALKEL 119 (265)
Q Consensus 43 ~e~~~~~~Raylalg~~~~~l~-ei~~~~-l~~~~~~A~~l~~~~~~e~-~~~~~~lE~~al~v~~~l~~~r~d~Aek~l 119 (265)
+....+.+...+..++++.+.. -+...+ -..+...+.|+...+..+. -....+....+. ..+..|+++.|.+..
T Consensus 599 l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~---~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 599 ISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFE---LALKVGQLTLARDLL 675 (814)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCCHHHHHH---HHHHHTCHHHHHHHH
T ss_pred ECcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCCcchhee---hhhhcCCHHHHHHHH
Confidence 3445566777788888887665 331111 1223667777776654332 122333333333 678899999998886
Q ss_pred HHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3174 120 KVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK--------YGSTPMLVNAQVAVLIAQDKYEEAWDLL 189 (265)
Q Consensus 120 ~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~--------~p~t~~lLn~~A~~~~~~g~~eEAe~~l 189 (265)
+. ++++..-.++|...+ ..++++.|...|..+.+- .......+-.++...+..|+++.|+.++
T Consensus 676 ~~---~~~~~~W~~la~~al----~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 676 TD---ESAEMKWRALGDASL----QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp TT---CCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hh---hCcHhHHHHHHHHHH----HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 54 455555455555444 347899999999986432 1233344445555555666666665554
No 238
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.10 E-value=5.3 Score=30.02 Aligned_cols=35 Identities=23% Similarity=0.136 Sum_probs=15.0
Q ss_pred HHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q psy3174 176 LIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGK 212 (265)
Q Consensus 176 ~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk 212 (265)
+|-+|+|++|..+.+..- .||+.-.++-|.+++|-
T Consensus 50 LmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~rlGl 84 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA--YPDLEPWLALCEYRLGL 84 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC--CchHHHHHHHHHHhccc
Confidence 444555555443331110 44444444444444443
No 239
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.20 E-value=6.1 Score=36.37 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC--CCHH---
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDK--DEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG--STPM--- 167 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~--- 167 (265)
-..+...++..|+..|+++.|.+.|.++.+. ...+.+- +....+.+..-.+++..+...+.++..... .++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid-~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKID-VMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3446677889999999999999999999884 4444432 222233333333779999999998864422 1222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 -LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 -lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+.-..|..++..++|.+|...+.+++..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 4456677899999999999999998764
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.37 E-value=20 Score=32.34 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCC--------C-cHH----HHHHHHHH-------HHHhccccHHHHHHHHH
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDE--------D-HTL----TQLCSAWV-------HIANNVDKLNEAFYTLQ 156 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--------d-~~l----~~la~a~v-------~l~~g~~~~~eA~~~~~ 156 (265)
+-....+......|+.+.|...+.+++.+-. + .-+ ..+.+.|+ ......|++.+|....+
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555667899999999999988421 1 111 12222222 22234488999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 157 DLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 157 el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.+...+|-.-.+.-.+-.++.+.|+..+|...|++.-.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998777777788889999999999999887754
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.65 E-value=10 Score=39.35 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHc-cCCCcHHHHHHHHHHH--------------------HHhccccHHHH
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQD-KDEDHTLTQLCSAWVH--------------------IANNVDKLNEA 151 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~-~~~d~~l~~la~a~v~--------------------l~~g~~~~~eA 151 (265)
+.++-..++++++++..|++++|...|+++-. +..+..+..+-..+.. +....+.++-+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 66777789999999999999999999988743 1121111110011111 11222334444
Q ss_pred HHHHHHHHhhcC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCC
Q psy3174 152 FYTLQDLIDKYG-STP----MLVNAQVAVLIAQDKYEEAWDLLQDTAGD--SEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 152 ~~~~~el~~~~p-~t~----~lLn~~A~~~~~~g~~eEAe~~l~~al~~--~pdtl~nl~~~~~~~Gk~ 213 (265)
..+-+-..+..+ +++ .++..+-..++..|+|++|...+...=.. --+.|..+++..+..|+.
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCh
Confidence 444444444332 322 25677888899999999998888654322 566777887777766654
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.55 E-value=5.1 Score=30.07 Aligned_cols=17 Identities=12% Similarity=-0.228 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy3174 196 SEDTLINNMVTAGRLGK 212 (265)
Q Consensus 196 ~pdtl~nl~~~~~~~Gk 212 (265)
.||+.-.++-|.+++|-
T Consensus 67 ~pdlepw~ALce~rlGl 83 (115)
T 2uwj_G 67 WPALEPWFALCEWHLGL 83 (115)
T ss_dssp CGGGHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHhccc
Confidence 44444444444444443
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.45 E-value=1.8 Score=34.38 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHT 130 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~ 130 (265)
..-||++.++..+.++|+|+.|.+....+++.+|++.
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3569999999999999999999999999999999986
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.99 E-value=2 Score=33.73 Aligned_cols=37 Identities=5% Similarity=0.016 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTL 131 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l 131 (265)
.-||++.++..+.++|+|+.|.+....+++.+|++.=
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 5699999999999999999999999999999999873
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.23 E-value=4.3 Score=35.59 Aligned_cols=96 Identities=10% Similarity=-0.028 Sum_probs=67.6
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHH--HhhcC----C
Q psy3174 91 NFGTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDL--IDKYG----S 164 (265)
Q Consensus 91 ~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el--~~~~p----~ 164 (265)
..|.+......++|.++-.|+++.|.+.++...+++|+.+.. +..|..+.. |+..=+++ +...| .
T Consensus 26 ~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~--a~~yr~lI~-------aE~~R~~vfaG~~~P~~~g~ 96 (273)
T 1zbp_A 26 ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG--ASQLRHLVK-------AAQARKDFAQGAATAKVLGE 96 (273)
T ss_dssp TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHH-------HHHHHHHHTTSCCCEECCCS
T ss_pred hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH--HHHHHHHHH-------HHHHHHHHHcCCCCCCCCCC
Confidence 357889999999999999999999999999999999998743 233333322 22222222 12222 1
Q ss_pred C-HH-HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 165 T-PM-LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 165 t-~~-lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
. +. -+...|......|+.++|..+-.+|++.
T Consensus 97 ~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 97 NEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1 11 3345677788899999999999999875
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.56 E-value=17 Score=27.30 Aligned_cols=93 Identities=12% Similarity=-0.120 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIA 178 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~ 178 (265)
++-.+.+--.++|.++|..+-.=.-..+++.+++.+-..-+ .++|+|++|..+-+.+. +|.+--..|.|--+
T Consensus 10 LAE~AL~gTG~H~HqEA~tIAdwL~~~~~~E~v~lIR~sSL---mNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~r 81 (116)
T 2p58_C 10 LAEIALIGTGNHYHEEANCIAEWLHLKGEEEAVQLIRLSSL---MNRGDYASALQQGNKLA-----YPDLEPWLALCEYR 81 (116)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHhCCcHHHHHHHHHHHH---HcchhHHHHHHhcCCCC-----CchHHHHHHHHHHh
Confidence 34444455568999999987666555555555554443222 35689999998766554 55566667889999
Q ss_pred cCCHHHHHHHHHHHhcC-CHHH
Q psy3174 179 QDKYEEAWDLLQDTAGD-SEDT 199 (265)
Q Consensus 179 ~g~~eEAe~~l~~al~~-~pdt 199 (265)
.|--.+++.-+.+.-.. +|..
T Consensus 82 lGl~s~le~rL~~la~sg~p~~ 103 (116)
T 2p58_C 82 LGLGSALESRLNRLARSQDPRI 103 (116)
T ss_dssp HTCHHHHHHHHHHHTTCCCHHH
T ss_pred cccHHHHHHHHHHHHhCCCHHH
Confidence 99999999998666555 7764
No 247
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=78.22 E-value=30 Score=29.28 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhcCCCHH-------HHHHHHH-HHHHcCCHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCccC
Q psy3174 148 LNEAFYTLQDLIDKYGSTPM-------LVNAQVA-VLIAQDKYEEAWDLLQDTAGDSED--TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 148 ~~eA~~~~~el~~~~p~t~~-------lLn~~A~-~~~~~g~~eEAe~~l~~al~~~pd--tl~nl~~~~~~~Gk~~ea~ 217 (265)
+++|.-+++.+...++-+.. ++--+|| +.|..|.|++|++++++.+..+|. -|-+.-..-....+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd----- 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN----- 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC-----
Confidence 45677777777766653222 2333444 358899999999999999987333 23222111111111
Q ss_pred CCChhhhc--HHHHHHHHHHHHhhcc
Q psy3174 218 VSPPFLFR--SDETTATLDACGLQSN 241 (265)
Q Consensus 218 p~hp~~~~--~~~~~~~FD~~~~~~~ 241 (265)
|.||++.+ |...-+.-+++++.+-
T Consensus 163 ~~H~~lqnFSy~~~~~ki~~fve~~~ 188 (235)
T 3bu8_A 163 LAHPVIQNFSYETFQQKMLRFLESHL 188 (235)
T ss_dssp TTSHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cccHHHHhccHHHHHHHHHHHHHHHh
Confidence 89999987 4555566666666553
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=77.69 E-value=18 Score=29.49 Aligned_cols=83 Identities=7% Similarity=0.036 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVA 174 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~ 174 (265)
+....-.++...+..|+++.|++.|+++.++ +- ..+++..+|. . +-+.-..++....++ .|....
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---~~-----L~~Ly~~tg~--~-e~L~kla~iA~~~g~----~n~af~ 97 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHSF---DK-----LSFLYLVTGD--V-NKLSKMQNIAQTRED----FGSMLL 97 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---HH-----HHHHHHHHTC--H-HHHHHHHHHHHHTTC----HHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---HH-----HHHHHHHhCC--H-HHHHHHHHHHHHCcc----HHHHHH
Confidence 3456677777888899999999999887432 12 2344444433 2 222233333333333 234445
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy3174 175 VLIAQDKYEEAWDLLQDT 192 (265)
Q Consensus 175 ~~~~~g~~eEAe~~l~~a 192 (265)
+++.+|+++++.++|.+.
T Consensus 98 ~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 98 NTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHC
Confidence 688999999999888654
No 249
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.51 E-value=6.3 Score=37.73 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q psy3174 98 INALKIHTYLTMYRNDLALKELKVMQ 123 (265)
Q Consensus 98 ~~al~v~~~l~~~r~d~Aek~l~~~~ 123 (265)
++.++++.|+..+.++.|++.+.+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 44455666666666666666666663
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.82 E-value=16 Score=27.33 Aligned_cols=92 Identities=12% Similarity=-0.088 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc
Q psy3174 100 ALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ 179 (265)
Q Consensus 100 al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~ 179 (265)
+-.+.+--.++|.++|..+-.=.-..+++.+++.+-..-+ .++|+|++|..+-+.+. +|.+--..|.|--+.
T Consensus 10 AE~AL~gTG~H~HqEA~tIAdwL~~~~~~E~v~lIR~sSL---mNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rl 81 (115)
T 2uwj_G 10 AELALAGSGQHCHEEALCIAEWLERLGQDEAARLIRISSL---ANQGRYQEALAFAHGNP-----WPALEPWFALCEWHL 81 (115)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHT
T ss_pred HHHHHHHccchHHHHHHHHHHHHHhCCcHHHHHHHHHHHH---HcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhc
Confidence 3334444458899999987665555555555554443222 35689999987765544 556666678899999
Q ss_pred CCHHHHHHHHHHHhcC-CHHH
Q psy3174 180 DKYEEAWDLLQDTAGD-SEDT 199 (265)
Q Consensus 180 g~~eEAe~~l~~al~~-~pdt 199 (265)
|--.+++.-+.+.-.. +|..
T Consensus 82 Gl~s~le~rL~~la~sg~p~~ 102 (115)
T 2uwj_G 82 GLGAALDRRLAGLGGSSDPAL 102 (115)
T ss_dssp TCHHHHHHHHHHHHTCSSHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHH
Confidence 9999999998666555 7764
No 251
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=75.31 E-value=14 Score=35.02 Aligned_cols=65 Identities=6% Similarity=-0.129 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRL 210 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~ 210 (265)
..+..|...|+++....|.+....|.+|++...+|+.-+|.=.+.+++.. .|....|+..+....
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999976 888888988887764
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.09 E-value=50 Score=30.17 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=81.5
Q ss_pred HHHHHHcccChhHHhhhcCChHHHHHHHHHHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---
Q psy3174 49 VCRSYLAQKKYKVVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK--- 125 (265)
Q Consensus 49 ~~Raylalg~~~~~l~ei~~~~l~~~~~~A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~--- 125 (265)
..+.|+..|+|..++. .+..+-.++... ++..--+|..++-+++|..++++..++..|.++...
T Consensus 105 L~~l~~~~~~y~~a~~--------~i~~l~~~~~~~-----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 105 LIALYFDTALYTEALA--------LGAQLLRELKKL-----DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp HHHHHHHTTCHHHHHH--------HHHHHHHHHTTS-----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHH--------HHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 3455777777776555 333344444332 122356899999999999999999999999988663
Q ss_pred --CCCcHHHH--HHHHHHHHHhccccHHHHHHHHHHHHhhcCC--CH---HHHHHHHHHHHHcCCHHHHHHHH
Q psy3174 126 --DEDHTLTQ--LCSAWVHIANNVDKLNEAFYTLQDLIDKYGS--TP---MLVNAQVAVLIAQDKYEEAWDLL 189 (265)
Q Consensus 126 --~~d~~l~~--la~a~v~l~~g~~~~~eA~~~~~el~~~~p~--t~---~lLn~~A~~~~~~g~~eEAe~~l 189 (265)
.|+.+... .+.|-..++ +.++|++|+..|-|....|.. ++ ..+--+..|-+..+...+=.+++
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~-~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l 243 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAA-DERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLV 243 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCHHHHHHHHHHhhHHHHH-hccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHh
Confidence 22223222 333444441 348899999999998777653 22 24555777888877755544433
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.99 E-value=10 Score=33.14 Aligned_cols=88 Identities=14% Similarity=0.050 Sum_probs=65.0
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHH------HHHHHHH-----HHcCC
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTL------INNMVTA-----GRLGK 212 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl------~nl~~~~-----~~~Gk 212 (265)
..+++++|....++-....|.+..+.-.+.-.++-.|+|+.|..-|+-+.+++|+.. .++|.+- ...|+
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~ 88 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA 88 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 347899999999999999999999999999999999999999999999988888732 3444332 33454
Q ss_pred CCccC--CCChhhhcHHHHHH
Q psy3174 213 GNEMS--VSPPFLFRSDETTA 231 (265)
Q Consensus 213 ~~ea~--p~hp~~~~~~~~~~ 231 (265)
..-.+ ..-||+..+.+...
T Consensus 89 ~~P~~~g~~~~w~~~ll~Al~ 109 (273)
T 1zbp_A 89 ATAKVLGENEELTKSLVSFNL 109 (273)
T ss_dssp CCEECCCSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 33222 33357777765443
No 254
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.23 E-value=12 Score=29.99 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=45.2
Q ss_pred ccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHHHH
Q psy3174 144 NVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD-SEDTL 200 (265)
Q Consensus 144 g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pdtl 200 (265)
.+++-+.-..++.++....+.+|.+|.-+|.+|-+.|...+|.+++.+|-+. -++.-
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kEAC 160 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEAC 160 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHHHH
Confidence 3467777788888865556677889999999999999999999999999887 55543
No 255
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.90 E-value=14 Score=30.83 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=48.8
Q ss_pred HHHHHHHhc--cccHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 136 SAWVHIANN--VDKLNEAFYTLQDLIDKYG--STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 136 ~a~v~l~~g--~~~~~eA~~~~~el~~~~p--~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-.|+..+.- .+...++..+|..+..+.- .....+-..|..+-.+|+|.+|..+++.+++.
T Consensus 81 klWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 81 KIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 356666554 4567899999999987744 45668888999999999999999999999987
No 256
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=69.74 E-value=14 Score=24.55 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3174 133 QLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 133 ~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe 186 (265)
+||+.-+ .++|.-+.+||..|-+-+.......-..---.+..+|-+|+|++|.
T Consensus 8 lLAe~AL-~~TG~HcH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 8 QLAELAL-AGTGHHCHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHH-HHHTTTCHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHH-HHccchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 4444333 4577788999999888877664422222222445689999999985
No 257
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=69.25 E-value=26 Score=28.47 Aligned_cols=17 Identities=35% Similarity=0.155 Sum_probs=9.5
Q ss_pred HHHHcCChHHHHHHHHH
Q psy3174 105 TYLTMYRNDLALKELKV 121 (265)
Q Consensus 105 ~~l~~~r~d~Aek~l~~ 121 (265)
..+..|+++.|..+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~ 30 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKK 30 (177)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 45555666666555444
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=65.49 E-value=18 Score=29.02 Aligned_cols=69 Identities=9% Similarity=0.033 Sum_probs=48.9
Q ss_pred HcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCH
Q psy3174 108 TMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIA---NNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY 182 (265)
Q Consensus 108 ~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~---~g~~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~ 182 (265)
.++++|.|+..|+.++.. ...- |-.|+..+ -.+|+...|..+........|....+| ..|...++.|+-
T Consensus 72 ei~D~d~aR~vy~~a~~~-hKkF----AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~~~ 143 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARAN-CKKF----AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQKK 143 (161)
T ss_dssp HHHCGGGCHHHHHHHHHH-CTTB----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTTCS
T ss_pred HhcCHHHHHHHHHHHHHH-hHHH----HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcCCC
Confidence 346788899999988876 3332 45555544 456889999999999888877665555 467777777764
No 259
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=64.46 E-value=10 Score=31.40 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHH-------HHHHHHHHHHHcCCCC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD-SED-------TLINNMVTAGRLGKGN 214 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pd-------tl~nl~~~~~~~Gk~~ 214 (265)
-+.-+|.+++.+++|.+|+..|.+|+.. +++ +|.-++.+...+|+.+
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566888899999999999999999887 222 5667788888889843
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.37 E-value=51 Score=31.41 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=51.3
Q ss_pred ccHHHHHHHHHHHHhhcCCC-----H--HHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHH---------HHHHHHHHHH
Q psy3174 146 DKLNEAFYTLQDLIDKYGST-----P--MLVNAQVAVLIAQDKYEEAWDLLQDTAGD-SED---------TLINNMVTAG 208 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t-----~--~lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pd---------tl~nl~~~~~ 208 (265)
+.|+.|..+..+.. +|.+ . --+..+|.+++.+++|.+|...+.+|+.+ +++ ++-.+++|..
T Consensus 245 ~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~L 322 (523)
T 4b4t_S 245 GEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQL 322 (523)
T ss_dssp SCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHh
Confidence 67999999998874 5632 1 13566799999999999999999999987 211 2235788888
Q ss_pred HcCCCCc
Q psy3174 209 RLGKGNE 215 (265)
Q Consensus 209 ~~Gk~~e 215 (265)
.+|+-++
T Consensus 323 LlG~iP~ 329 (523)
T 4b4t_S 323 LMGDIPE 329 (523)
T ss_dssp HHTCCCC
T ss_pred hcCCCCC
Confidence 8999654
No 261
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=63.79 E-value=18 Score=33.92 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC--C---cHHHHHH-----HHHHHHHhccccHHHHHHHHHHHHhh-cC
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDE--D---HTLTQLC-----SAWVHIANNVDKLNEAFYTLQDLIDK-YG 163 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d---~~l~~la-----~a~v~l~~g~~~~~eA~~~~~el~~~-~p 163 (265)
.+-.+..+..+|.++|++.+++.+++.+..... + .+..+.+ .+.+.+.. ++|.+|+..+.++... +|
T Consensus 175 ~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~--~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 175 LLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLN--SQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHH--ccHHHHHHHHHHHHHhcCC
Confidence 345577778999999999999999998866432 1 1222222 23333333 6677887777777776 55
Q ss_pred CC----------HHHHHHHHHHHHHcCCHHHHH
Q psy3174 164 ST----------PMLVNAQVAVLIAQDKYEEAW 186 (265)
Q Consensus 164 ~t----------~~lLn~~A~~~~~~g~~eEAe 186 (265)
.+ ..+|.-+-.+.+.+|++++-.
T Consensus 253 ~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ 285 (455)
T 3t5v_B 253 LPLTNQAITRNGTRILNYMIPTGLILGKMVKWG 285 (455)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHcCCCCCHH
Confidence 32 224555566677777776653
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=57.04 E-value=44 Score=30.00 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCcH--HHHHHHHHHHHHhccccHHHHHHHHHHHHh
Q psy3174 97 EINALKIHTYLTMYRNDLALKELKVMQDKDEDHT--LTQLCSAWVHIANNVDKLNEAFYTLQDLID 160 (265)
Q Consensus 97 E~~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~--l~~la~a~v~l~~g~~~~~eA~~~~~el~~ 160 (265)
.++..++..++..||++.|...+..+...+|-+- -.++..++. ..|+..+|...|+++..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~----~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY----LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH----TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHH
Confidence 3455567788999999999999999999887553 334444443 55889999999999754
No 263
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=56.24 E-value=44 Score=26.47 Aligned_cols=57 Identities=19% Similarity=0.051 Sum_probs=45.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 136 SAWVHIANNVDKLNEAFYTLQDLIDKYG--STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 136 ~a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-.|+..+.- ..++..+|+.+..+.- .....+-..|..+-.+|++.+|..+++.+++.
T Consensus 72 klWl~ya~~---~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 72 SYCLKFAEY---NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHTT---BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHh---cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 457766653 3458888888877643 45668888999999999999999999999987
No 264
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=56.16 E-value=13 Score=35.11 Aligned_cols=73 Identities=12% Similarity=-0.009 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCccC--------CCChhhhcHHHHHHHHHHH
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGDSED---TLINNMVTAGRLGKGNEMS--------VSPPFLFRSDETTATLDAC 236 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~~pd---tl~nl~~~~~~~Gk~~ea~--------p~hp~~~~~~~~~~~FD~~ 236 (265)
.|..+|.+...+..+..|...+.+|..++|+ ....|++++...|+.-++. ..+|+..........||+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 6778999999999999999999999999776 6778899999988766554 6677777777888899987
Q ss_pred Hhhc
Q psy3174 237 GLQS 240 (265)
Q Consensus 237 ~~~~ 240 (265)
....
T Consensus 234 ~~~~ 237 (497)
T 1ya0_A 234 LESR 237 (497)
T ss_dssp TTSC
T ss_pred Hhhh
Confidence 6554
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.91 E-value=1.1e+02 Score=31.70 Aligned_cols=113 Identities=11% Similarity=0.062 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----------------
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK----------------- 161 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~----------------- 161 (265)
...+++.++..++++.|.... .|-+.+.......|.+.+.. |++++|+..|++....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~----~~~~~~~~~~yl~g~~~L~~--ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLI----GWLNSDPIAVYLKALIYLKS--KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHH----HHSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh----hhccCCcHHHHHHHHHHHhc--CCHHHHHHHHHHHhhhhcccchhhhhhcccccc
Confidence 344566788889998886533 34444444444455565656 7799999999885311
Q ss_pred ---cC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC----CHH----HHHHHHHHHHHcCCCCccC
Q psy3174 162 ---YG---STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD----SED----TLINNMVTAGRLGKGNEMS 217 (265)
Q Consensus 162 ---~p---~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~----~pd----tl~nl~~~~~~~Gk~~ea~ 217 (265)
.+ ..+.-+.....++-+.|.++.+...-+.|++. +++ .+.++...+..+|+.++|+
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 11 11223455666788899999999999999875 443 4578889999999999987
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.19 E-value=1.3e+02 Score=26.75 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCc
Q psy3174 164 STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS--EDTLINNMVTAGRLGKGNE 215 (265)
Q Consensus 164 ~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~--pdtl~nl~~~~~~~Gk~~e 215 (265)
-+|.+-..+|..+..-|++.+|+..+. +..+ |++++++.+-+...+.+.|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhcCCcc
Confidence 478888899999999999999999884 3333 5788888877766665433
No 267
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.50 E-value=73 Score=25.46 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=43.7
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 136 SAWVHIANNVDKLNEAFYTLQDLIDKYG--STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 136 ~a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-.|+..+... .++..+|..+..+.- .....+...|..+-..|+|.+|.++++.+++.
T Consensus 67 klWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 67 NLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3566665433 446678888876643 45667888899999999999999999999987
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.94 E-value=2.2e+02 Score=27.41 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q psy3174 146 DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTAGRLGKG 213 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~~pdtl~nl~~~~~~~Gk~ 213 (265)
++++.|...|+.+.......+.....+|-++.++|+-++|..++.++... .+...+ .....+|.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~~fYg~-lAa~~Lg~~ 363 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--RGFYPM-VAAQRIGEE 363 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSHHHH-HHHHHTTCC
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--CChHHH-HHHHHcCCC
Confidence 66777777777665543345556677777778888888888888777652 233222 245566765
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.60 E-value=67 Score=29.49 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHc---cCCCcHH--H--HHHHHHHHHHhccccHHHHHHHHHHHHhhcC--C
Q psy3174 94 THLEINALKIHTYLTMYRNDLALKELKVMQD---KDEDHTL--T--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYG--S 164 (265)
Q Consensus 94 ~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~---~~~d~~l--~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p--~ 164 (265)
.-+|.....+++++..+++..|+..++++.. -.++++. . ....+.+... .++|.+|...|.++.+.+. .
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~--e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLH--KREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHhcccccC
Confidence 4478999999999999999999999998743 1222322 2 2333444444 4889999999999987643 2
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3174 165 TP----MLVNAQVAVLIAQDKYEEAWDLLQD 191 (265)
Q Consensus 165 t~----~lLn~~A~~~~~~g~~eEAe~~l~~ 191 (265)
++ .++...-+|.+..+.-++-..++..
T Consensus 253 d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~ 283 (445)
T 4b4t_P 253 DEAKWKPVLSHIVYFLVLSPYGNLQNDLIHK 283 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCSSTTHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 22 2444444555555555544444443
No 270
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=44.41 E-value=24 Score=24.92 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-+...|+-....|+|+||..++.++++.
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3556778889999999999999999883
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.97 E-value=1.7e+02 Score=26.42 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHcc---CCC-cHHH--HHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDK---DED-HTLT--QLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 93 ~~~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~---~~d-~~l~--~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
..-+++....+++++..++++.|...+.++... ++| .... ..+.+.+.+ ..++|.+|...|-++...+.
T Consensus 165 ~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l--~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 165 GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCL--AVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGG--GTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHhccCC
Confidence 567899999999999999999999999998663 333 2222 223333333 34889999999999987765
No 272
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=43.81 E-value=1.2e+02 Score=24.17 Aligned_cols=92 Identities=13% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCccCCcchhHHHHHhhhhccHHHHHHHHhhcccCChhhhhhHHHHHHHHHHcccChh-----HHhhhcCChHHHHHHHH
Q psy3174 3 STADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK-----VVLEEKLPEELSCIKVL 77 (265)
Q Consensus 3 ~~~~~~~delf~vr~~fy~G~Y~~~i~~~~~~~~~~~~~~~e~~~~~~Raylalg~~~-----~~l~ei~~~~l~~~~~~ 77 (265)
||.|---+-+.+..-+|--.+|.+||+..+++.+.+- ......-++.|||...... .+++.|
T Consensus 3 ~~~~P~q~a~i~a~~afl~~dYs~VI~~L~~~~~~~L--p~~~kY~LA~SYI~~e~Ls~eQKenIln~i----------- 69 (161)
T 2ynq_A 3 STAQPKQEAYIQSTELFLQNKYSDVITTLEDYAPEDM--PYVIQYELASSYVMTESLTEEQRQTVSNNI----------- 69 (161)
T ss_dssp ---CHHHHHHHHHHHHHTTTCHHHHHHHHTTSCGGGS--CHHHHHHHHHHHHHTSSSCHHHHHHHHHTC-----------
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHhcCChhhC--ChhHHHHHHHHHHHccCCCHHHHHHHHhhC-----------
Confidence 4455445567888999999999999998765543221 1122455688999876543 222222
Q ss_pred HHHhcCCCcCcccccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy3174 78 AEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVM 122 (265)
Q Consensus 78 A~~l~~~~~~e~~~~~~~lE~~al~v~~~l~~~r~d~Aek~l~~~ 122 (265)
... .+..=+.+. ||+..|++++|..+=+.+
T Consensus 70 ----tlk--------Sde~yL~YW---IyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 70 ----TLK--------TDEQYMLYW---IYIGRSQSEEALELARTI 99 (161)
T ss_dssp ----CTT--------SCHHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred ----Ccc--------CCHHHHHHH---HHHcCCchHHHHHHHHhc
Confidence 000 111223333 899999999998887776
No 273
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=41.67 E-value=28 Score=24.46 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
-+...|+-....|+|+||..++.++++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 355677888999999999999999988
No 274
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.32 E-value=67 Score=26.77 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCccCCCChhhhcH------HHHHHHHHHHHhhcc
Q psy3174 174 AVLIAQDKYEEAWDLLQDTAGDSED------TLINNMVTAGRLGKGNEMSVSPPFLFRS------DETTATLDACGLQSN 241 (265)
Q Consensus 174 ~~~~~~g~~eEAe~~l~~al~~~pd------tl~nl~~~~~~~Gk~~ea~p~hp~~~~~------~~~~~~FD~~~~~~~ 241 (265)
.+.|..|.+++|+++|++.+..++. -|.+.| .+.-|.||++.+. ..+..-++.......
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II---------~~Kd~~H~~lqnFSy~~~~~kik~fve~~~~e~~ 195 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMII---------SQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKS 195 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHH---------HTTCTTCHHHHHSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHH---------HccCCCcHHHHHccHHHHHHHHHHHHHHHhcccC
Q ss_pred cc
Q psy3174 242 SE 243 (265)
Q Consensus 242 ~~ 243 (265)
|.
T Consensus 196 ~~ 197 (211)
T 3bqo_A 196 ST 197 (211)
T ss_dssp TS
T ss_pred cH
No 275
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=37.18 E-value=36 Score=24.12 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.+...|+-.-..|+|+||..++.++++.
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677888899999999999999999874
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=36.63 E-value=1.1e+02 Score=29.50 Aligned_cols=117 Identities=13% Similarity=-0.006 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy3174 99 NALKIHTYLTMYRNDLALKELKVMQDKDE-DHTLTQLCSAWVHIANNV-DKLNEAFYTLQDLIDKYGSTPMLVNAQVAVL 176 (265)
Q Consensus 99 ~al~v~~~l~~~r~d~Aek~l~~~~~~~~-d~~l~~la~a~v~l~~g~-~~~~eA~~~~~el~~~~p~t~~lLn~~A~~~ 176 (265)
++..+...+.-.+++.|...+........ +..........+...... +...++.+.+.+.....+++. +.--.+-..
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~A 295 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHH
Confidence 44444555566688999999988854322 222222222223222222 325677777777665544433 344444456
Q ss_pred HHcCCHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCcc
Q psy3174 177 IAQDKYEEAWDLLQDTAGD---SEDTLINNMVTAGRLGKGNEM 216 (265)
Q Consensus 177 ~~~g~~eEAe~~l~~al~~---~pdtl~nl~~~~~~~Gk~~ea 216 (265)
++.|+|+.|...+...-.. .+.-.+.++.....+|+..++
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a 338 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEA 338 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHH
Confidence 6789999999998765443 455778899988889987654
No 277
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.86 E-value=1.1e+02 Score=25.75 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=45.5
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 136 SAWVHIANNVDKLNEAFYTLQDLIDKYG--STPMLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 136 ~a~v~l~~g~~~~~eA~~~~~el~~~~p--~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-.|+..+.- ..++..+|..+..+.- .....+-..|..+-.+|+|.+|..+++.+++.
T Consensus 121 klWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 121 RIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 457766653 3577788888877643 45668888999999999999999999999986
No 278
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Probab=33.43 E-value=53 Score=23.68 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=33.5
Q ss_pred cCCCcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q psy3174 125 KDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYG 163 (265)
Q Consensus 125 ~~~d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p 163 (265)
+.+-..+.+..+.|-+|..|.=.+++|..+|++....+.
T Consensus 38 iqDIELL~KnTEIWdkLl~gkISIEEAKklFedn~~~y~ 76 (104)
T 3hkz_Y 38 IQDIELLMRNTEIWDNLLNGKITLEEAKKLFEDNYKEYE 76 (104)
T ss_dssp CCCTTHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhhHHHHHHHcCcccHHHHHHHHHHHHHHHh
Confidence 445568889999999999988889999999999987765
No 279
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.56 E-value=42 Score=24.52 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
.--.|-.++..|+|+||.+..++|..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34567788999999999876665543
No 280
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=32.53 E-value=1.8e+02 Score=23.17 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC--CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhh
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDE--DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDK 161 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~~--d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~ 161 (265)
.-|-+-+..-++...|+.|.-+++++..+.-.+ .+.+..+|.||-.+ |...+|-.+..++.++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Kl----g~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRV----GDERDATTLLIEACKK 154 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHh----cchhhHHHHHHHHHHh
Confidence 346666666788889999999999998755555 56777788877755 5577888888887765
No 281
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.44 E-value=1.1e+02 Score=28.53 Aligned_cols=97 Identities=9% Similarity=-0.046 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHHHHhh--------cCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhcC-CHH-------------HHH
Q psy3174 146 DKLNEAFYTLQDLIDK--------YGSTP--MLVNAQVAVLIAQDKYEEAWDLLQDTAGD-SED-------------TLI 201 (265)
Q Consensus 146 ~~~~eA~~~~~el~~~--------~p~t~--~lLn~~A~~~~~~g~~eEAe~~l~~al~~-~pd-------------tl~ 201 (265)
++++-+..+++-+... +|... .-+.-+|..++.+++|.+|...|.+|+.. .|. +|.
T Consensus 190 ~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILk 269 (455)
T 3t5v_B 190 ESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILN 269 (455)
T ss_dssp SCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHH
Confidence 6677777777766443 22111 23678899999999999999999999986 331 455
Q ss_pred HHHHHHHHcCCCCccC----CCChhhhc-HHH--------HHHHHHHHHhhccc
Q psy3174 202 NNMVTAGRLGKGNEMS----VSPPFLFR-SDE--------TTATLDACGLQSNS 242 (265)
Q Consensus 202 nl~~~~~~~Gk~~ea~----p~hp~~~~-~~~--------~~~~FD~~~~~~~~ 242 (265)
-++.+...+|+..+.. |.+|-+.. +.. --..||+..+++..
T Consensus 270 yLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~ 323 (455)
T 3t5v_B 270 YMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNER 323 (455)
T ss_dssp HHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence 7888999999865432 44444444 333 23468888777653
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.71 E-value=2.2e+02 Score=22.56 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 171 AQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 171 ~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
..|..|.+.|++.-|..++.+++.
T Consensus 80 AvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 80 AGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344445555555555555555544
No 283
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=28.49 E-value=60 Score=23.21 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-+...|+-.-..|+|+||..++.++++.
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556777888999999999999999874
No 284
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.16 E-value=67 Score=22.32 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
-+...|+-.-..|+|+||..++.++++.
T Consensus 15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 15 ELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677778899999999999999883
No 285
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.05 E-value=2.3e+02 Score=22.37 Aligned_cols=31 Identities=3% Similarity=-0.265 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q psy3174 96 LEINALKIHTYLTMYRNDLALKELKVMQDKD 126 (265)
Q Consensus 96 lE~~al~v~~~l~~~r~d~Aek~l~~~~~~~ 126 (265)
++--+..+..+...|++=+|...+..+....
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~ 62 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNY 62 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 3344555555666677777777777765443
No 286
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.37 E-value=60 Score=33.00 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 154 ~~~el~~~~p~t~~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
+-+++..-.|+|+..-.-+|.+++..|++++|..++++|..
T Consensus 828 ~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 828 ACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 34567777888999888999999999999999999998864
No 287
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.99 E-value=71 Score=23.95 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 169 VNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 169 Ln~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
+...|+-.-..|+|+||..++.++++
T Consensus 21 lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 21 LASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566667788999999999999987
No 288
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=23.88 E-value=79 Score=23.26 Aligned_cols=29 Identities=7% Similarity=0.016 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.++...|.-..+.|+|++|++.+.++-+.
T Consensus 19 rs~~~eAl~~Ak~g~fe~A~~~l~eA~~~ 47 (103)
T 1wcr_A 19 RSLAYAALKQAKQGDFAAAKAMMDQSRMA 47 (103)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34555677789999999999999998663
No 289
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.63 E-value=80 Score=23.32 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
.++.-.|.-..+.|+|++|++.+.+|-+.
T Consensus 21 rS~~~eAl~~Ak~g~fe~A~~~l~eA~~~ 49 (105)
T 2e2a_A 21 RSKLLEALKAAENGDFAKADSLVVEAGSC 49 (105)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35556677789999999999999998664
No 290
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=22.51 E-value=1.3e+02 Score=21.66 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q psy3174 129 HTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKY 162 (265)
Q Consensus 129 ~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~ 162 (265)
..|....+.|-+|..|.=.+++|..+|++....|
T Consensus 42 ElLmKnTEIWd~Ll~gkISIeEAKK~Fedn~~~y 75 (104)
T 4ayb_Q 42 ELLMKNTEIWDNLLNGKISVDEAKRLFEDNYKDY 75 (104)
T ss_dssp HHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHcCcccHHHHHHHHHHHHHHH
Confidence 3566777899999999889999999999976554
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.32 E-value=3.4e+02 Score=22.56 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHcc----CC----CcHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCH
Q psy3174 95 HLEINALKIHTYLTMYRNDLALKELKVMQDK----DE----DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTP 166 (265)
Q Consensus 95 ~lE~~al~v~~~l~~~r~d~Aek~l~~~~~~----~~----d~~l~~la~a~v~l~~g~~~~~eA~~~~~el~~~~p~t~ 166 (265)
.++-..--.-+++...++|+|...+.+..+. .+ +++.. ..-+...-...+-.=+..+.+++.. ++ .+
T Consensus 17 wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~---~~~l~~ki~eR~~~L~~~L~~~l~~-~~-~~ 91 (235)
T 2d2s_A 17 FLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELML---LNLISLKIEQRREAISSKLSQSILS-SN-EI 91 (235)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHH---HHHHHHHHHHHHHHHHHHHHHHHHT-CS-SH
T ss_pred HHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHH---HHHHHHHHHHHHHHHHHHHHHHHHh-cC-CH
Confidence 3444555566899999999999988877552 21 11211 1112222111223334455666644 33 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q psy3174 167 MLVNAQVAVLIAQDKYEEAWDLLQDTAG 194 (265)
Q Consensus 167 ~lLn~~A~~~~~~g~~eEAe~~l~~al~ 194 (265)
..+-.....+.++|+-++|..++.++-.
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4444445668999999999999987754
No 292
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.38 E-value=1e+02 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q psy3174 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGD 195 (265)
Q Consensus 168 lLn~~A~~~~~~g~~eEAe~~l~~al~~ 195 (265)
+....|.-..+.|+|++|++.+.+|-+.
T Consensus 24 s~~~eAl~~Ak~gdfe~A~~~l~eA~~~ 51 (109)
T 3k1s_A 24 SFAMEALQFAKQGKMAEADEAMVKAKEA 51 (109)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445666788999999999999998654
Done!