Your job contains 1 sequence.
>psy3174
MSSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQKKYK
VVLEEKLPEELSCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELK
VMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD
KYEEAWDLLQDTAGDSEDTLINNMVTAGRLGKGNEMSVSPPFLFRSDETTATLDACGLQS
NSESTPRDSGERKISAELPGESQGL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3174
(265 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1RXG7 - symbol:LOC100525632 "Uncharacterized p... 164 2.3e-22 2
FB|FBgn0027496 - symbol:epsilonCOP "epsilonCOP" species:7... 208 2.3e-22 2
ZFIN|ZDB-GENE-041114-59 - symbol:cope "coatomer protein c... 259 2.6e-22 1
UNIPROTKB|Q5ZIK9 - symbol:COPE "Coatomer subunit epsilon"... 249 3.0e-21 1
UNIPROTKB|F1S7E0 - symbol:LOC100525632 "Uncharacterized p... 248 3.9e-21 1
UNIPROTKB|E2RAT6 - symbol:COPE "Uncharacterized protein" ... 247 4.9e-21 1
MGI|MGI:1891702 - symbol:Cope "coatomer protein complex, ... 244 1.0e-20 1
UNIPROTKB|O14579 - symbol:COPE "Coatomer subunit epsilon"... 243 1.3e-20 1
UNIPROTKB|G3V8Q1 - symbol:Cope "Coatomer protein complex,... 242 1.7e-20 1
UNIPROTKB|Q28104 - symbol:COPE "Coatomer subunit epsilon"... 241 2.1e-20 1
TAIR|locus:2204644 - symbol:AT1G30630 species:3702 "Arabi... 226 8.3e-19 1
TAIR|locus:2044792 - symbol:AT2G34840 species:3702 "Arabi... 209 5.3e-17 1
DICTYBASE|DDB_G0267950 - symbol:copE "coatomer protein co... 154 2.0e-15 2
RGD|1306785 - symbol:Cope "coatomer protein complex, subu... 169 3.5e-15 2
WB|WBGene00009732 - symbol:F45G2.4.2 species:6239 "Caenor... 152 6.3e-09 1
POMBASE|SPBC24C6.05 - symbol:sec28 "coatomer epsilon subu... 119 3.1e-06 2
ASPGD|ASPL0000054697 - symbol:AN0665 species:162425 "Emer... 105 0.00045 2
>UNIPROTKB|F1RXG7 [details] [associations]
symbol:LOC100525632 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] InterPro:IPR006822 Pfam:PF04733 PIRSF:PIRSF016478
GO:GO:0005198 GO:GO:0030126 GO:GO:0006890 PANTHER:PTHR10805
GeneTree:ENSGT00390000003478 OMA:LERYPNE EMBL:CU640428
RefSeq:XP_003135361.1 UniGene:Ssc.82644 Ensembl:ENSSSCT00000013753
GeneID:100521239 KEGG:ssc:100521239 Uniprot:F1RXG7
Length = 256
Score = 164 (62.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXX 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YL Q
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLEQRKFGV 68
Query: 62 XXXXXXXXXX---SCIKVLAEYLSIPSK 86
I++ AEYL+ S+
Sbjct: 69 VLEEIKPSSSPELQAIRMFAEYLASDSR 96
Score = 137 (53.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 37/85 (43%), Positives = 48/85 (56%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLN-EA 151
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV++A VD + E
Sbjct: 143 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLA--VDSSHPET 200
Query: 152 FYTLQDLIDKYGSTPMLVNAQVAVL 176
L L G P + N ++ L
Sbjct: 201 PINLIVLSQHLGKPPEVTNRYLSQL 225
Score = 40 (19.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 25/113 (22%), Positives = 42/113 (37%)
Query: 97 EINALKIHT-YLTM-YRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYT 154
E+ A+++ YL R D + EL + D T T I + + A T
Sbjct: 80 ELQAIRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRT 139
Query: 155 LQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLINNMVTA 207
L G + + V +L+ D+ + A L+ ED + + TA
Sbjct: 140 LHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 187
>FB|FBgn0027496 [details] [associations]
symbol:epsilonCOP "epsilonCOP" species:7227 "Drosophila
melanogaster" [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=ISS] [GO:0030126 "COPI vesicle coat"
evidence=ISS] [GO:0005198 "structural molecule activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005875 EMBL:AE014134 GO:GO:0005198
Gene3D:1.25.40.10 GO:GO:0030126 GO:GO:0006890 eggNOG:NOG289253
OMA:NLAMGGE PANTHER:PTHR10805 GeneTree:ENSGT00390000003478
EMBL:AF145691 RefSeq:NP_609037.1 UniGene:Dm.3125 SMR:Q9Y0Y5
IntAct:Q9Y0Y5 MINT:MINT-853697 STRING:Q9Y0Y5
EnsemblMetazoa:FBtr0079261 GeneID:33908 KEGG:dme:Dmel_CG9543
UCSC:CG9543-RA CTD:33908 FlyBase:FBgn0027496 InParanoid:Q9Y0Y5
OrthoDB:EOG4JDFPG GenomeRNAi:33908 NextBio:785871 Uniprot:Q9Y0Y5
Length = 306
Score = 208 (78.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 48/125 (38%), Positives = 73/125 (58%)
Query: 94 THLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFY 153
T+LE AL + L + R DLA + + MQ+ +D TLTQL AWV +A +++ +AF+
Sbjct: 135 TNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFH 194
Query: 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTA---GDSEDTLINNMVTAGRL 210
Q+ +K+ TP L+N Q V + ++YEEA +L+++ + DTLIN MV A
Sbjct: 195 IYQEFCEKFKPTPALLNGQAVVHLGLERYEEADSVLRESLLKKHNDYDTLINLMVHAHLT 254
Query: 211 GKGNE 215
GK E
Sbjct: 255 GKPTE 259
Score = 66 (28.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 22/56 (39%), Positives = 26/56 (46%)
Query: 3 STADNEVDE---LFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLA 55
S NE D LFD RN YY+GN+ I + T LL Y+ SYLA
Sbjct: 2 SRQQNEEDTNSVLFDARNEYYIGNFMGSINFVLPEQGTAGPELLS---YMYLSYLA 54
>ZFIN|ZDB-GENE-041114-59 [details] [associations]
symbol:cope "coatomer protein complex, subunit
epsilon" species:7955 "Danio rerio" [GO:0005198 "structural
molecule activity" evidence=IEA] [GO:0006890 "retrograde
vesicle-mediated transport, Golgi to ER" evidence=IEA] [GO:0030126
"COPI vesicle coat" evidence=IEA] InterPro:IPR006822
InterPro:IPR011990 Pfam:PF04733 PIRSF:PIRSF016478
ZFIN:ZDB-GENE-041114-59 GO:GO:0005198 Gene3D:1.25.40.10
GO:GO:0030126 GO:GO:0006890 eggNOG:NOG289253 HOGENOM:HOG000205825
PANTHER:PTHR10805 CTD:11316 HOVERGEN:HBG002201 OrthoDB:EOG43XV42
EMBL:BC085575 IPI:IPI00495409 RefSeq:NP_001007365.1
UniGene:Dr.30701 ProteinModelPortal:Q5U3E8 STRING:Q5U3E8
PRIDE:Q5U3E8 GeneID:492492 KEGG:dre:492492 InParanoid:Q5U3E8
NextBio:20865054 ArrayExpress:Q5U3E8 Bgee:Q5U3E8 Uniprot:Q5U3E8
Length = 300
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 59/128 (46%), Positives = 83/128 (64%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R D+A KELK MQD+DED TLTQL +AWV++A +KL +AF
Sbjct: 135 GESLECMAMTVQILLKLDRVDMARKELKKMQDQDEDATLTQLATAWVNLAIGGEKLQDAF 194
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DKY T +L+N Q A +AQ+K++EA +LQD DS +TLIN +V
Sbjct: 195 YIFQEMSDKYSPTLLLLNGQAASHMAQNKWDEAESVLQDALDKDSGHPETLINLIVLTQH 254
Query: 210 LGKGNEMS 217
+GK E++
Sbjct: 255 MGKPFEVT 262
Score = 177 (67.4 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 56/209 (26%), Positives = 103/209 (49%)
Query: 3 STADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXXX 62
++ +EVDELFDV+N++Y+G+YQ CI E Q++K + P+ EK+ ++ R+Y+AQ
Sbjct: 2 ASQQSEVDELFDVKNAFYIGSYQHCINEAQKVKTSGPEKESEKNIFLYRAYIAQRKYGVV 61
Query: 63 XXX---XXXXXXSCIKVLAEYLSIPSKNGSSNFGTHLEIN-ALKIH--TYLTMYRNDLAL 116
+++ AEYLS K + +I+ ++ + T+L M + + L
Sbjct: 62 LDDIKPSSTEELQAVRMFAEYLSSEGKRDAIVADLDKKISKSVDVSNTTFLLMAAS-IYL 120
Query: 117 KELKVMQDKDEDHTLTQL-CSAW-VHIANNVDKLNEAFYTLQDLIDKYGSTPM--LVNAQ 172
E+ H L C A V I +D+++ A L+ + D+ + L A
Sbjct: 121 HEMNTDAALRTLHQGESLECMAMTVQILLKLDRVDMARKELKKMQDQDEDATLTQLATAW 180
Query: 173 VAVLIAQDKYEEAWDLLQDTAGDSEDTLI 201
V + I +K ++A+ + Q+ + TL+
Sbjct: 181 VNLAIGGEKLQDAFYIFQEMSDKYSPTLL 209
>UNIPROTKB|Q5ZIK9 [details] [associations]
symbol:COPE "Coatomer subunit epsilon" species:9031 "Gallus
gallus" [GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] InterPro:IPR006822
InterPro:IPR011990 Pfam:PF04733 PIRSF:PIRSF016478 GO:GO:0005198
GO:GO:0015031 Gene3D:1.25.40.10 GO:GO:0030126 GO:GO:0006890
eggNOG:NOG289253 HOGENOM:HOG000205825 PANTHER:PTHR10805 OMA:TWAELIC
CTD:11316 GeneTree:ENSGT00390000003478 HOVERGEN:HBG002201
OrthoDB:EOG43XV42 EMBL:AJ720775 IPI:IPI00575570
RefSeq:NP_001006339.1 UniGene:Gga.6968 ProteinModelPortal:Q5ZIK9
STRING:Q5ZIK9 PRIDE:Q5ZIK9 Ensembl:ENSGALT00000004991 GeneID:420117
KEGG:gga:420117 InParanoid:Q5ZIK9 NextBio:20823077 Uniprot:Q5ZIK9
Length = 308
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 58/128 (45%), Positives = 83/128 (64%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ I L + R DLA KELK MQ++DED TLTQL +AWV++A +KL +A+
Sbjct: 143 GESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DK ST +L+N Q A +AQ K+++A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEALDKDSGHPETLINFVVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
Score = 175 (66.7 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 58/208 (27%), Positives = 96/208 (46%)
Query: 8 EVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXXXXXXXX 67
E DELFDV+NS+Y+G YQ I E QR+K ++P+ E+D ++ RSY+AQ
Sbjct: 15 EADELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIK 74
Query: 68 XXXX---SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKV-MQ 123
+++ AEYLS N S +++ K+ + + L +
Sbjct: 75 ANASPELQAVRMFAEYLS----NESQRDAIVADLDK-KMAKSVDVANTTFLLMAASIYFH 129
Query: 124 DKDEDHTLTQL-------CSAW-VHIANNVDKLNEAFYTLQDLI--DKYGSTPMLVNAQV 173
DK+ D L L C A + I +D+L+ A L+ + D+ + L A V
Sbjct: 130 DKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWV 189
Query: 174 AVLIAQDKYEEAWDLLQDTAGDSEDTLI 201
+ I +K ++A+ + Q+ A TL+
Sbjct: 190 NLAIGGEKLQDAYYIFQEMADKCSSTLL 217
>UNIPROTKB|F1S7E0 [details] [associations]
symbol:LOC100525632 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005198 Gene3D:1.25.40.10 GO:GO:0030126
GO:GO:0006890 OMA:NLAMGGE PANTHER:PTHR10805
GeneTree:ENSGT00390000003478 EMBL:CU640483 RefSeq:XP_003123584.1
UniGene:Ssc.81882 Ensembl:ENSSSCT00000027115 GeneID:100525632
KEGG:ssc:100525632 Uniprot:F1S7E0
Length = 308
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 58/128 (45%), Positives = 82/128 (64%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV++A +KL +A+
Sbjct: 143 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSE--DTLINNMVTAGR 209
Y Q++ DK ST +L+N Q A +AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSSHPETLINLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
Score = 189 (71.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 61/213 (28%), Positives = 101/213 (47%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXX 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKFGV 68
Query: 62 XXXXXXXXXX---SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKE 118
I++ AEYL+ S+ + E++ T T L +
Sbjct: 69 VLDEIKPSSAPELQAIRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTF----LLMAA 124
Query: 119 LKVMQDKDEDHTLTQL-------CSAW-VHIANNVDKLNEAFYTLQDLIDKYGSTPM--L 168
D++ D L L C A V I +D+L+ A L+ + D+ + L
Sbjct: 125 SIYFHDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQL 184
Query: 169 VNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLI 201
A V + + +K ++A+ + Q+ A TL+
Sbjct: 185 ATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLL 217
>UNIPROTKB|E2RAT6 [details] [associations]
symbol:COPE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005198 Gene3D:1.25.40.10 GO:GO:0030126
GO:GO:0006890 OMA:NLAMGGE PANTHER:PTHR10805 CTD:11316
GeneTree:ENSGT00390000003478 EMBL:AAEX03012274 RefSeq:XP_865271.2
ProteinModelPortal:E2RAT6 Ensembl:ENSCAFT00000023078 GeneID:476663
KEGG:cfa:476663 NextBio:20852280 Uniprot:E2RAT6
Length = 308
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 58/128 (45%), Positives = 82/128 (64%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV++A +KL +A+
Sbjct: 143 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DK ST +L+N Q A +AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQEMADKCSSTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
Score = 190 (71.9 bits), Expect = 8.1e-15, P = 8.1e-15
Identities = 61/213 (28%), Positives = 101/213 (47%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXX 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGV 68
Query: 62 XXXXXXXXXX---SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKE 118
+++ AEYL+ S+ S E++ T T L +
Sbjct: 69 VLDEIKPSSAPELQAVRMFAEYLANDSQRDSIVVELDREMSRSVDVTNTTF----LLMAA 124
Query: 119 LKVMQDKDEDHTLTQL-------CSAW-VHIANNVDKLNEAFYTLQDLIDKYGSTPM--L 168
D++ D L L C A V I +D+L+ A L+ + D+ + L
Sbjct: 125 SIYFHDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQL 184
Query: 169 VNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLI 201
A V + + +K ++A+ + Q+ A TL+
Sbjct: 185 ATAWVNLAVGGEKLQDAYYIFQEMADKCSSTLL 217
>MGI|MGI:1891702 [details] [associations]
symbol:Cope "coatomer protein complex, subunit epsilon"
species:10090 "Mus musculus" [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016192
"vesicle-mediated transport" evidence=IEA] [GO:0030126 "COPI
vesicle coat" evidence=IEA] [GO:0030137 "COPI-coated vesicle"
evidence=IDA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 MGI:MGI:1891702 EMBL:U89427 GO:GO:0005198
GO:GO:0015031 Gene3D:1.25.40.10 GO:GO:0030137 GO:GO:0030126
GO:GO:0006890 eggNOG:NOG289253 HOGENOM:HOG000205825 OMA:NLAMGGE
PANTHER:PTHR10805 CTD:11316 GeneTree:ENSGT00390000003478
HOVERGEN:HBG002201 OrthoDB:EOG43XV42 EMBL:AB039837 EMBL:BC009170
EMBL:BC083336 IPI:IPI00130840 RefSeq:NP_067513.1 UniGene:Mm.28668
ProteinModelPortal:O89079 SMR:O89079 STRING:O89079
PhosphoSite:O89079 REPRODUCTION-2DPAGE:O89079 PaxDb:O89079
PRIDE:O89079 Ensembl:ENSMUST00000066469 GeneID:59042 KEGG:mmu:59042
UCSC:uc009lzx.1 InParanoid:O89079 NextBio:314654 Bgee:O89079
CleanEx:MM_COPE Genevestigator:O89079 GermOnline:ENSMUSG00000055681
Uniprot:O89079
Length = 308
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 60/128 (46%), Positives = 80/128 (62%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ I L + R DLA KELK MQD+DED TLTQL +AWV++A +KL EA+
Sbjct: 143 GDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q+L DK T +L+N Q A AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
Score = 190 (71.9 bits), Expect = 8.1e-15, P = 8.1e-15
Identities = 60/212 (28%), Positives = 100/212 (47%)
Query: 3 STADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXXX 62
S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ
Sbjct: 10 SGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVV 69
Query: 63 XXXXXXXXX---SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKEL 119
+++ AEYL+ ++ S E++ T T L +
Sbjct: 70 LDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTF----LLMAAS 125
Query: 120 KVMQDKDEDHTLTQL-------CSAW-VHIANNVDKLNEAFYTLQDLIDKYGSTPM--LV 169
D++ D L L C A + I +D+L+ A L+ + D+ + L
Sbjct: 126 IYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLA 185
Query: 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLI 201
A V + + +K +EA+ + Q+ A TL+
Sbjct: 186 TAWVNLAVGGEKLQEAYYIFQELADKCSPTLL 217
>UNIPROTKB|O14579 [details] [associations]
symbol:COPE "Coatomer subunit epsilon" species:9606 "Homo
sapiens" [GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0006891
"intra-Golgi vesicle-mediated transport" evidence=ISS] [GO:0030126
"COPI vesicle coat" evidence=ISS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006890 "retrograde vesicle-mediated transport,
Golgi to ER" evidence=TAS] [GO:0016044 "cellular membrane
organization" evidence=TAS] [GO:0048205 "COPI coating of Golgi
vesicle" evidence=TAS] [GO:0005794 "Golgi apparatus" evidence=IDA]
Reactome:REACT_11123 InterPro:IPR006822 InterPro:IPR011990
Pfam:PF04733 PIRSF:PIRSF016478 GO:GO:0005829 GO:GO:0005198
GO:GO:0015031 Gene3D:1.25.40.10 GO:GO:0006891 EMBL:CH471106
GO:GO:0030126 GO:GO:0048205 GO:GO:0006890 EMBL:AC005197
eggNOG:NOG289253 HOGENOM:HOG000205825 OMA:NLAMGGE PANTHER:PTHR10805
CTD:11316 HOVERGEN:HBG002201 OrthoDB:EOG43XV42 EMBL:AJ131182
EMBL:AJ249366 EMBL:AL136928 EMBL:AK126476 EMBL:AK315281
EMBL:CR456886 EMBL:AC002985 EMBL:BC003155 EMBL:BC007250
EMBL:BC017285 EMBL:BM454494 IPI:IPI00399318 IPI:IPI00399319
IPI:IPI00465132 RefSeq:NP_009194.2 RefSeq:NP_955474.1
RefSeq:NP_955476.1 UniGene:Hs.10326 ProteinModelPortal:O14579
SMR:O14579 IntAct:O14579 MINT:MINT-5000768 STRING:O14579
PhosphoSite:O14579 OGP:O14579 PaxDb:O14579 PRIDE:O14579 DNASU:11316
Ensembl:ENST00000262812 Ensembl:ENST00000349893
Ensembl:ENST00000351079 GeneID:11316 KEGG:hsa:11316 UCSC:uc002nkk.3
GeneCards:GC19M019010 HGNC:HGNC:2234 HPA:CAB034345 MIM:606942
neXtProt:NX_O14579 PharmGKB:PA26750 InParanoid:O14579
PhylomeDB:O14579 ChiTaRS:COPE GenomeRNAi:11316 NextBio:42987
ArrayExpress:O14579 Bgee:O14579 CleanEx:HS_COPE
Genevestigator:O14579 GermOnline:ENSG00000105669 Uniprot:O14579
Length = 308
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 57/128 (44%), Positives = 79/128 (61%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R DLA KELK MQD DED TLTQL +AWV +A +KL +A+
Sbjct: 143 GDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DK T +L+N Q A +AQ ++E A LLQ+ DS +TL+N +V +
Sbjct: 203 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
Score = 195 (73.7 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 62/214 (28%), Positives = 104/214 (48%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXX 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGV 68
Query: 62 XXXXXXXXXX---SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKE 118
+++ A+YL+ S+ S E++ T T L +
Sbjct: 69 VLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTF----LLMAA 124
Query: 119 LKVMQDKDEDHTLTQL-------CSAW-VHIANNVDKLNEA---FYTLQDLIDKYGSTPM 167
+ D++ D L L C+A V I +D+L+ A +QDL D+ +
Sbjct: 125 SIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDL-DEDATLTQ 183
Query: 168 LVNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLI 201
L A V++ +K ++A+ + Q+ A TL+
Sbjct: 184 LATAWVSLATGGEKLQDAYYIFQEMADKCSPTLL 217
>UNIPROTKB|G3V8Q1 [details] [associations]
symbol:Cope "Coatomer protein complex, subunit epsilon
(Predicted), isoform CRA_c" species:10116 "Rattus norvegicus"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005198 Gene3D:1.25.40.10 GO:GO:0030126
GO:GO:0006890 OMA:NLAMGGE PANTHER:PTHR10805
GeneTree:ENSGT00390000003478 EMBL:CH474031 UniGene:Rn.229750
PRIDE:G3V8Q1 Ensembl:ENSRNOT00000027381 Uniprot:G3V8Q1
Length = 308
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 59/128 (46%), Positives = 80/128 (62%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ I L + R DLA KELK MQ++DED TLTQL +AWV++A +KL EA+
Sbjct: 143 GDGLECTAMTIQILLKLDRLDLARKELKRMQEQDEDATLTQLATAWVNLAMGGEKLQEAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q+L DK T +L+N Q A AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEALDKDSGHPETLINLIVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
Score = 191 (72.3 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 60/212 (28%), Positives = 102/212 (48%)
Query: 3 STADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXXX 62
S + EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ
Sbjct: 10 SGSSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVV 69
Query: 63 XXXXXXXXX---SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKEL 119
+++ AEYL+ ++ S E++ T T L +
Sbjct: 70 LDEIKPSSAPELQAVRMFAEYLASENRRDSIVLELDREMSRSVDVTNTTF----LLMAAS 125
Query: 120 KVMQDKDEDHTLTQL-------CSAW-VHIANNVDKLNEAFYTLQDLI--DKYGSTPMLV 169
D++ D L L C+A + I +D+L+ A L+ + D+ + L
Sbjct: 126 IYFHDQNPDAALRTLHQGDGLECTAMTIQILLKLDRLDLARKELKRMQEQDEDATLTQLA 185
Query: 170 NAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLI 201
A V + + +K +EA+ + Q+ A TL+
Sbjct: 186 TAWVNLAMGGEKLQEAYYIFQELADKCSPTLL 217
>UNIPROTKB|Q28104 [details] [associations]
symbol:COPE "Coatomer subunit epsilon" species:9913 "Bos
taurus" [GO:0005515 "protein binding" evidence=IPI] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA]
[GO:0030126 "COPI vesicle coat" evidence=IDA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005198 "structural molecule activity"
evidence=IEA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 GO:GO:0005198 GO:GO:0015031 Gene3D:1.25.40.10
GO:GO:0006891 GO:GO:0030126 GO:GO:0006890 PDB:3MKR PDBsum:3MKR
eggNOG:NOG289253 HOGENOM:HOG000205825 OMA:NLAMGGE PANTHER:PTHR10805
EMBL:X76980 EMBL:AB042117 EMBL:BT029899 EMBL:BC109963
IPI:IPI00696888 PIR:I46019 RefSeq:NP_788846.1 UniGene:Bt.4141
ProteinModelPortal:Q28104 IntAct:Q28104 STRING:Q28104 PRIDE:Q28104
Ensembl:ENSBTAT00000001071 GeneID:338085 KEGG:bta:338085 CTD:11316
GeneTree:ENSGT00390000003478 HOVERGEN:HBG002201 InParanoid:Q28104
OrthoDB:EOG43XV42 EvolutionaryTrace:Q28104 NextBio:20812532
ArrayExpress:Q28104 Uniprot:Q28104
Length = 308
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 57/128 (44%), Positives = 80/128 (62%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
G LE A+ + L + R DLA KELK MQD+DED TLTQL +AWV +A +KL +A+
Sbjct: 143 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 202
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DS--EDTLINNMVTAGR 209
Y Q++ DK T +L+N Q A +AQ ++E A +LQ+ DS +TLIN +V +
Sbjct: 203 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 262
Query: 210 LGKGNEMS 217
LGK E++
Sbjct: 263 LGKPPEVT 270
Score = 185 (70.2 bits), Expect = 3.1e-14, P = 3.1e-14
Identities = 60/213 (28%), Positives = 101/213 (47%)
Query: 2 SSTADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXX 61
+S EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ
Sbjct: 9 ASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGV 68
Query: 62 XXXXXXXXXX---SCIKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKE 118
+++ AEYL+ S+ + E++ T T L +
Sbjct: 69 VLDEIKPSSAPELQAVRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTF----LLMAA 124
Query: 119 LKVMQDKDEDHTLTQL-------CSAW-VHIANNVDKLNEAFYTLQDLIDKYGSTPM--L 168
D++ D L L C A V I +D+L+ A L+ + D+ + L
Sbjct: 125 SIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQL 184
Query: 169 VNAQVAVLIAQDKYEEAWDLLQDTAGDSEDTLI 201
A V++ +K ++A+ + Q+ A TL+
Sbjct: 185 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL 217
>TAIR|locus:2204644 [details] [associations]
symbol:AT1G30630 species:3702 "Arabidopsis thaliana"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA;ISS] [GO:0008565 "protein transporter activity"
evidence=ISS] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005774 GO:GO:0005198 GO:GO:0015031 Gene3D:1.25.40.10
GO:GO:0030126 EMBL:AC007060 GO:GO:0006890 EMBL:AF348588
EMBL:AF370325 EMBL:AY063113 EMBL:AY087474 IPI:IPI00518170
PIR:F86431 RefSeq:NP_174351.1 UniGene:At.21622
ProteinModelPortal:Q9SA78 SMR:Q9SA78 STRING:Q9SA78 PaxDb:Q9SA78
PRIDE:Q9SA78 DNASU:839943 EnsemblPlants:AT1G30630.1 GeneID:839943
KEGG:ath:AT1G30630 TAIR:At1g30630 eggNOG:NOG289253
HOGENOM:HOG000205825 InParanoid:Q9SA78 OMA:NLAMGGE PhylomeDB:Q9SA78
ProtClustDB:CLSN2682314 Genevestigator:Q9SA78 PANTHER:PTHR10805
Uniprot:Q9SA78
Length = 292
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 51/137 (37%), Positives = 83/137 (60%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
GT ++++AL + ++ M+R+D A K+L+VMQ DEDHTLTQL SAW+++A K+ EA+
Sbjct: 134 GT-MDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAY 192
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSED--TLINNMVTAGR 209
QD +KY T +++N + + +EEA LL + D++D TL N +V +
Sbjct: 193 LIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLH 252
Query: 210 LGKG-----NEMSVSPP 221
+GK N++ +S P
Sbjct: 253 VGKSSSRYLNQLKLSHP 269
>TAIR|locus:2044792 [details] [associations]
symbol:AT2G34840 species:3702 "Arabidopsis thaliana"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA;ISS] [GO:0008565 "protein transporter activity"
evidence=ISS] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR006822
InterPro:IPR011990 Pfam:PF04733 PIRSF:PIRSF016478 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005198 GO:GO:0015031
Gene3D:1.25.40.10 GO:GO:0030126 GO:GO:0006890 EMBL:AC004238
eggNOG:NOG289253 HOGENOM:HOG000205825 ProtClustDB:CLSN2682314
PANTHER:PTHR10805 EMBL:AY075627 EMBL:AY142051 IPI:IPI00525188
PIR:T00466 RefSeq:NP_181030.1 UniGene:At.37752
ProteinModelPortal:O64748 SMR:O64748 STRING:O64748 PaxDb:O64748
PRIDE:O64748 DNASU:818049 EnsemblPlants:AT2G34840.1 GeneID:818049
KEGG:ath:AT2G34840 TAIR:At2g34840 InParanoid:O64748 OMA:TWAELIC
PhylomeDB:O64748 Genevestigator:O64748 GermOnline:AT2G34840
Uniprot:O64748
Length = 293
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 46/130 (35%), Positives = 78/130 (60%)
Query: 93 GTHLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAF 152
GT +++ AL + ++ M+R + A K+L+VMQ DEDHTLTQL SAW+++A K+ EA+
Sbjct: 135 GT-MDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAY 193
Query: 153 YTLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSED--TLINNMVTAGR 209
+D +KY T +++N + + ++EA LL + D++D TL N +V +
Sbjct: 194 LIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLH 253
Query: 210 LGKGNEMSVS 219
+GK + +S
Sbjct: 254 VGKSSSRHLS 263
>DICTYBASE|DDB_G0267950 [details] [associations]
symbol:copE "coatomer protein complex epsilon
subunit" species:44689 "Dictyostelium discoideum" [GO:0030126 "COPI
vesicle coat" evidence=IEA;ISS] [GO:0006890 "retrograde
vesicle-mediated transport, Golgi to ER" evidence=IEA] [GO:0005198
"structural molecule activity" evidence=IEA] [GO:0006891
"intra-Golgi vesicle-mediated transport" evidence=ISS] [GO:0031410
"cytoplasmic vesicle" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=IEA] [GO:0016020 "membrane" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030663
"COPI-coated vesicle membrane" evidence=IEA] [GO:0000139 "Golgi
membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 dictyBase:DDB_G0267950 GenomeReviews:CM000150_GR
GO:GO:0005198 GO:GO:0015031 EMBL:AAFI02000003 Gene3D:1.25.40.10
GO:GO:0006891 GO:GO:0030126 GO:GO:0006890 eggNOG:NOG289253
OMA:NLAMGGE PANTHER:PTHR10805 RefSeq:XP_647441.1
ProteinModelPortal:Q55FU2 STRING:Q55FU2 PRIDE:Q55FU2
EnsemblProtists:DDB0233799 GeneID:8616248 KEGG:ddi:DDB_G0267950
ProtClustDB:CLSZ2431541 Uniprot:Q55FU2
Length = 300
Score = 154 (59.3 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 40/126 (31%), Positives = 66/126 (52%)
Query: 95 HLEINALKIHTYLTMYRNDLALKELKVMQDK-DEDHTLTQLCSAWVHIANNVDKLNEAFY 153
H+E ++ I +L + R DLA K M+ D D T L AW++I N +KL A
Sbjct: 139 HIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALS 198
Query: 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDS---EDTLINNMVTAGRL 210
+ +++ ++YG TP+L+N Q I ++E+A LL ++ + DTL N + +
Sbjct: 199 SFEEMAERYGPTPLLLNGQAVCAIGMKRFEKAESLLLESIEKNPKNSDTLANLINCYINM 258
Query: 211 GKGNEM 216
K NE+
Sbjct: 259 KKPNEI 264
Score = 92 (37.4 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 10 DELFDVRNSYYLGNYQQCIKE-GQRLKATDPKVL-LEKDFYVCRSYLAQXXXXXXXXXXX 67
D LF+ +N +YLGNYQ I E ++ + K L E D+++ R Y+AQ
Sbjct: 4 DILFESKNYFYLGNYQSTINEINKKSRQIIEKSLKAESDYFLYRCYIAQGNYDLVLQETK 63
Query: 68 XXXXSC-------IKVLAEYLSIPSKN 87
S +++LA YLS P +N
Sbjct: 64 NNRGSGEDPTIAGLQLLASYLSKPDEN 90
>RGD|1306785 [details] [associations]
symbol:Cope "coatomer protein complex, subunit epsilon"
species:10116 "Rattus norvegicus" [GO:0005794 "Golgi apparatus"
evidence=ISO] [GO:0030137 "COPI-coated vesicle" evidence=ISO]
InterPro:IPR006822 Pfam:PF04733 RGD:1306785 GO:GO:0005198
GO:GO:0030126 GO:GO:0006890 eggNOG:NOG289253 HOGENOM:HOG000205825
PANTHER:PTHR10805 CTD:11316 OrthoDB:EOG43XV42 EMBL:CH474031
EMBL:BC161928 IPI:IPI00201137 RefSeq:NP_001099546.1
UniGene:Rn.229750 STRING:B1WBX7 GeneID:290659 KEGG:rno:290659
UCSC:RGD:1306785 NextBio:631441 Genevestigator:B1WBX7
Uniprot:B1WBX7
Length = 166
Score = 169 (64.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 3 STADNEVDELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXXX 62
S + EVDELFDV+N++Y+G+YQQCI E QR+K + P+ +E+D ++ R+YLAQ
Sbjct: 10 SGSSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVV 69
Query: 63 XXXXXXXXX---SCIKVLAEYLSIPSKNGS 89
+++ AEYL+ ++ S
Sbjct: 70 LDEIKPSSAPELQAVRMFAEYLASENRRDS 99
Score = 36 (17.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 93 GTHLEINALKIHTYLTMYRNDLA 115
G LE A+ I L + R DLA
Sbjct: 143 GDGLECTAMTIQILLKLDRLDLA 165
>WB|WBGene00009732 [details] [associations]
symbol:F45G2.4.2 species:6239 "Caenorhabditis elegans"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR006822 InterPro:IPR011990 Pfam:PF04733
PIRSF:PIRSF016478 InterPro:IPR002885 GO:GO:0040010 GO:GO:0002119
GO:GO:0005198 GO:GO:0015031 GO:GO:0040011 Gene3D:1.25.40.10
GO:GO:0030126 GO:GO:0006890 TIGRFAMs:TIGR00756 eggNOG:NOG289253
HOGENOM:HOG000205825 OMA:NLAMGGE PANTHER:PTHR10805
GeneTree:ENSGT00390000003478 EMBL:Z93382 PIR:T22236
RefSeq:NP_499771.1 ProteinModelPortal:O62246 SMR:O62246
DIP:DIP-24766N IntAct:O62246 MINT:MINT-1075566 STRING:O62246
PaxDb:O62246 EnsemblMetazoa:F45G2.4.1 EnsemblMetazoa:F45G2.4.2
GeneID:176766 KEGG:cel:CELE_F45G2.4 UCSC:F45G2.4.2 CTD:176766
WormBase:F45G2.4 InParanoid:O62246 NextBio:893918 Uniprot:O62246
Length = 292
Score = 152 (58.6 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 42/115 (36%), Positives = 60/115 (52%)
Query: 96 LEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTL 155
LE A K+ + M + LA+ E+K M DED TL+QL +A V K+ +A Y
Sbjct: 132 LEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASGKVKDALYIY 191
Query: 156 QDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAG-DSEDT--LINNMVTA 207
++ DKYG T L Q V I Y A +LL+ D++D LIN++V+A
Sbjct: 192 SEMSDKYGRTTDLEMHQAVVSILTQDYAAAEELLESALERDNKDADVLINSIVSA 246
Score = 120 (47.3 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 48/210 (22%), Positives = 84/210 (40%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLAQXXXXXXXXXXXXX 69
D+LF +RN ++LG+YQ CI E + + + + EKD Y+ RSY+AQ
Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62
Query: 70 XXSC----IKVLAEYLSIPSKNGSSNFGTHLEINALKIHTYLTMYRNDLALKELKVMQDK 125
S ++ AE+ + P+ E+ + I + + L E + QD
Sbjct: 63 TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATILNEADLSQDA 122
Query: 126 DE-----DHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQD 180
+ + ++ I N KL + ID+ + L NA V A
Sbjct: 123 FRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASG 182
Query: 181 KYEEA---WDLLQDTAGDSEDTLINNMVTA 207
K ++A + + D G + D ++ V +
Sbjct: 183 KVKDALYIYSEMSDKYGRTTDLEMHQAVVS 212
>POMBASE|SPBC24C6.05 [details] [associations]
symbol:sec28 "coatomer epsilon subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006886
"intracellular protein transport" evidence=IC] [GO:0006888 "ER to
Golgi vesicle-mediated transport" evidence=ISO] [GO:0006890
"retrograde vesicle-mediated transport, Golgi to ER" evidence=IEA]
[GO:0030126 "COPI vesicle coat" evidence=ISO] [GO:0032511 "late
endosome to vacuole transport via multivesicular body sorting
pathway" evidence=ISO] InterPro:IPR006822 InterPro:IPR011990
Pfam:PF04733 PIRSF:PIRSF016478 PomBase:SPBC24C6.05 GO:GO:0005829
GO:GO:0006886 GO:GO:0005198 EMBL:CU329671 GenomeReviews:CU329671_GR
Gene3D:1.25.40.10 GO:GO:0006888 GO:GO:0030126 GO:GO:0006890
GO:GO:0032511 eggNOG:NOG289253 PANTHER:PTHR10805 PIR:T39969
RefSeq:NP_595959.1 ProteinModelPortal:O74767 STRING:O74767
EnsemblFungi:SPBC24C6.05.1 GeneID:2540317 KEGG:spo:SPBC24C6.05
OrthoDB:EOG41RT44 NextBio:20801446 Uniprot:O74767
Length = 288
Score = 119 (46.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 35/117 (29%), Positives = 62/117 (52%)
Query: 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANN-VDKLNEAFY 153
+LE AL+++ +L ++ + A + LK D ++ + QL +W+ I + V+ N+AFY
Sbjct: 125 NLEAVALQVYIHLREHKIEAAEQTLKQALDWADEEIVLQLAQSWIKIVSGGVESYNDAFY 184
Query: 154 TLQDLIDKYGSTPMLVNAQVAVLIAQDKYEEAWDLLQDTAGDSE---DTLINNMVTA 207
++L + S PM + I + EEA L+ TA DS+ + ++NM TA
Sbjct: 185 VFEEL-NGTDSNPMTLTGMACADICLLRPEEALSSLK-TALDSQPNYEEALSNMTTA 239
Score = 47 (21.6 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 10 DELFDVRNSYYLGNYQQCIKEGQRLKATDPKVLLEKDFYVCRSYLA 55
+EL+ VR +Y GNY + + + K L + Y+ R+ LA
Sbjct: 10 NELYFVRQYFYSGNYTKLFEIDTT--SMSEKGLELTEIYMARAKLA 53
>ASPGD|ASPL0000054697 [details] [associations]
symbol:AN0665 species:162425 "Emericella nidulans"
[GO:0005198 "structural molecule activity" evidence=IEA]
[GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER"
evidence=IEA] [GO:0030126 "COPI vesicle coat" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR006822
InterPro:IPR011990 Pfam:PF04733 PIRSF:PIRSF016478 EMBL:BN001308
GO:GO:0005198 Gene3D:1.25.40.10 GO:GO:0030126 GO:GO:0006890
HOGENOM:HOG000205825 PANTHER:PTHR10805
EnsemblFungi:CADANIAT00002009 OMA:LERYPNE Uniprot:C8VRT1
Length = 315
Score = 105 (42.0 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 95 HLEINALKIHTYLTMYRNDLALKELKVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYT 154
+LE AL + +L R+DLALKE++ + +D L L +WV + +K AFY
Sbjct: 133 NLEAVALIVQIHLQQNRSDLALKEVQAAKRWAQDSLLVNLAESWVGMRVGGEKYQSAFYV 192
Query: 155 LQDL--IDKYGSTPMLVNAQVAVLIAQDKYEEA 185
++L +D S P+ + Q I + EA
Sbjct: 193 YEELASVDST-SAPLSIIGQAVAEIHLGRLPEA 224
Score = 44 (20.5 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 11 ELFDVRNSYYLGNYQQCI 28
EL ++ N+++ G YQ I
Sbjct: 9 ELINIHNAFHQGQYQSVI 26
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 265 250 0.00080 114 3 11 23 0.37 34
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 604 (64 KB)
Total size of DFA: 192 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.79u 0.08s 20.87t Elapsed: 00:00:11
Total cpu time: 20.80u 0.08s 20.88t Elapsed: 00:00:11
Start: Thu Aug 15 13:00:36 2013 End: Thu Aug 15 13:00:47 2013