RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3174
         (265 letters)



>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 203

 Score = 28.3 bits (63), Expect = 0.81
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 12/77 (15%)

Query: 126 DEDHTLTQLCSA---WVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY 182
           D +  LT L SA      I            + + L+ +         A V + I   ++
Sbjct: 79  DMEAELTPLESAINVLEMIKTEFTLTEAVVESSRKLVKE---------AAVIICIKNKEF 129

Query: 183 EEAWDLLQDTAGDSEDT 199
           E+A  +L+        T
Sbjct: 130 EKASKILKKHMSKDPTT 146


>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 426

 Score = 28.5 bits (63), Expect = 0.83
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 120 KVMQDKDEDHTLTQLCSAWVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQ 179
            V  D D+   +  +    +  A+  +     +   Q ++ +        NA +A + A 
Sbjct: 235 GVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCAT 294

Query: 180 DKYEEAWDLLQDTAGDSEDTLINNMVTAGRLG 211
           +        +   A  +   L N +V     G
Sbjct: 295 E--------VFKIATSAYIPLNNYLVFNDVDG 318


>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 204

 Score = 25.1 bits (55), Expect = 8.6
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 15/76 (19%)

Query: 126 DEDHTLTQLCSA---WVHIANNVDKLNEAFYTLQDLIDKYGSTPMLVNAQVAVLIAQDKY 182
           + D  +T L SA   W  I    DKL+E    +Q+LI             +AV +    +
Sbjct: 82  ENDERITPLESALMIWGSIEKEHDKLHE---EIQNLIKI---------QAIAVCMENGNF 129

Query: 183 EEAWDLLQDTAGDSED 198
           +EA ++ +   GD   
Sbjct: 130 KEAEEVFERIFGDPNS 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 935,043
Number of extensions: 42187
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 6
Length of query: 265
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,254,276
Effective search space: 227023956
Effective search space used: 227023956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)