BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3175
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 17 RNADYAEITRKVQF--------PMGRTLNSHDYVFWCGDFNYRIXXXXXXXXXXXXXXXX 68
RN DY +I ++QF P+ T+++HD + W GD NYRI
Sbjct: 151 RNQDYKDICSRMQFCQPDPSLPPL--TISNHDVILWLGDLNYRIEELDVEKVKKLIEEKD 208
Query: 69 -XXXXXFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRM 125
+DQL+IQ VF+GFTEG ++F PTYKYD SDD+DTSEK RAPAW DR+
Sbjct: 209 FQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRI 266
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 17 RNADYAEITRKVQF--------PMGRTLNSHDYVFWCGDFNYRIXXXXXXXXXXXXXXXX 68
RN DY +I ++QF P+ T+++HD + W GD NYRI
Sbjct: 154 RNQDYKDICSRMQFCQPDPSLPPL--TISNHDVILWLGDLNYRIEELDVEKVKKLIEEKD 211
Query: 69 -XXXXXFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRM 125
+DQL+IQ VF+GFTEG ++F PTYKYD SDD+DTSEK RAPAW DR+
Sbjct: 212 FQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRI 269
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 66/118 (55%)
Query: 8 AIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIXXXXXXXXXXXXXXX 67
A G ER+ DY I ++F GR++ +HDYV W GDFNYRI
Sbjct: 168 AAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGK 227
Query: 68 XXXXXXFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRM 125
+DQL Q G VF F+E I+FPPTYK+D+ +D YDTS+K R PAWTDR+
Sbjct: 228 LSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRI 285
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 21/148 (14%)
Query: 10 GGRKVAERNADYAEITRKVQFP------------MGRTLNSHDYVFWCGDFNYRIXXXXX 57
G KVAER DY + + P D VFW GDFN+R+
Sbjct: 155 GDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRT 214
Query: 58 XXXXXXXXXXXXXXXXF---DQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSE 114
DQL + +G +FKGF E I F P+YK+D+ D YD++
Sbjct: 215 VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTS 274
Query: 115 KARAPAWTDRMSVPPPFLFRSNGTWNNC 142
K R P++TDR+ L+RS + C
Sbjct: 275 KQRTPSYTDRV------LYRSRHKGDIC 296
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 10 GGRKVAERNADYAEITRKVQFPMGRTLNSHD------YVFWCGDFNYRIXXXXXXXXXXX 63
G K A RN +Y +I R + R LN+ D ++FW GD NYR+
Sbjct: 149 GNEKTARRNQNYLDILRLLSLG-DRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYI 207
Query: 64 XXXXXXXXXXFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDY-------DTSEKA 116
DQL +++++ VF F+E ISFPPTY+Y+ S D T +
Sbjct: 208 SRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRT 267
Query: 117 RAPAWTDRM 125
P+W DR+
Sbjct: 268 NVPSWCDRI 276
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
Query: 14 VAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIXXXXXXXXXXXXXXXXXXXXX 73
V N YA TR + + D++FW GD N R+
Sbjct: 141 VTSTNTKYAYDTR---LDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMA 197
Query: 74 FDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
FDQL+ ++Q L F G+TE ++F PTYK+ +D+YD S P+WTDR
Sbjct: 198 FDQLKKAKEQKL-FDGWTEPQVTFKPTYKFKPNTDEYDLSA---TPSWTDR 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,332,682
Number of Sequences: 62578
Number of extensions: 148469
Number of successful extensions: 474
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 7
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)