Query psy3175
Match_columns 151
No_of_seqs 110 out of 935
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:16:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00128 IPPc Inositol polyp 100.0 1.7E-53 3.6E-58 354.9 11.0 145 3-151 143-299 (310)
2 KOG0566|consensus 100.0 3E-53 6.5E-58 384.3 10.2 144 3-150 678-825 (1080)
3 PLN03191 Type I inositol-1,4,5 100.0 1.4E-51 3.1E-56 363.8 11.5 145 3-151 425-586 (621)
4 COG5411 Phosphatidylinositol 5 100.0 2.8E-45 6E-50 312.9 7.9 144 3-150 170-320 (460)
5 PTZ00312 inositol-1,4,5-tripho 99.9 4.2E-26 9.1E-31 188.0 6.1 96 3-102 85-218 (356)
6 KOG1976|consensus 99.7 4.3E-18 9.4E-23 141.1 1.9 126 15-150 197-382 (391)
7 KOG0565|consensus 99.4 6.9E-14 1.5E-18 104.6 4.2 74 2-75 63-145 (145)
8 COG3568 ElsH Metal-dependent h 97.5 0.0001 2.3E-09 60.6 4.0 38 3-49 137-174 (259)
9 TIGR03395 sphingomy sphingomye 97.4 0.00087 1.9E-08 55.5 8.2 48 3-53 138-191 (283)
10 PF03372 Exo_endo_phos: Endonu 97.3 2.4E-06 5.3E-11 64.9 -7.9 47 3-54 125-171 (249)
11 TIGR00633 xth exodeoxyribonucl 96.6 0.0014 3.1E-08 51.7 2.8 47 3-53 105-155 (255)
12 PTZ00297 pantothenate kinase; 94.5 0.06 1.3E-06 53.8 5.3 47 3-49 155-205 (1452)
13 PRK13911 exodeoxyribonuclease 94.3 0.084 1.8E-06 42.9 4.9 31 120-150 212-245 (250)
14 PRK05421 hypothetical protein; 93.5 0.085 1.9E-06 42.8 3.5 41 3-50 153-193 (263)
15 PF14529 Exo_endo_phos_2: Endo 93.2 0.0054 1.2E-07 42.8 -3.5 32 119-150 86-118 (119)
16 PRK11756 exonuclease III; Prov 91.2 0.14 3E-06 41.2 2.1 46 3-52 106-156 (268)
17 KOG2756|consensus 87.2 0.48 1E-05 39.9 2.5 49 3-53 209-257 (349)
18 PLN03144 Carbon catabolite rep 86.0 0.74 1.6E-05 42.3 3.2 59 3-67 422-480 (606)
19 TIGR00195 exoDNase_III exodeox 82.6 1 2.2E-05 35.9 2.3 47 3-53 102-152 (254)
20 KOG3873|consensus 77.6 2.4 5.1E-05 37.0 3.1 49 4-56 134-188 (422)
21 KOG2338|consensus 76.7 1 2.2E-05 40.3 0.7 48 3-52 257-305 (495)
22 KOG3870|consensus 68.7 2 4.3E-05 37.8 0.6 17 36-52 349-365 (434)
23 smart00476 DNaseIc deoxyribonu 68.2 3.9 8.4E-05 34.0 2.2 43 3-53 147-190 (276)
24 PHA01474 nonstructural protein 59.6 2.2 4.7E-05 26.0 -0.6 21 99-129 9-29 (52)
25 cd07393 MPP_DR1119 Deinococcus 49.0 35 0.00077 26.9 4.6 33 14-53 24-56 (232)
26 PRK15251 cytolethal distending 47.3 24 0.00051 29.4 3.4 39 4-49 156-194 (271)
27 PRK11439 pphA serine/threonine 41.5 49 0.0011 25.9 4.3 39 19-65 30-70 (218)
28 PRK10947 global DNA-binding tr 38.3 20 0.00044 26.8 1.5 24 97-122 93-119 (135)
29 PF10515 APP_amyloid: beta-amy 35.8 9.8 0.00021 24.0 -0.4 6 98-103 45-50 (52)
30 COG1908 FrhD Coenzyme F420-red 35.4 39 0.00084 25.1 2.6 29 5-33 67-95 (132)
31 cd07423 MPP_PrpE Bacillus subt 34.0 1.2E+02 0.0027 23.8 5.5 45 19-64 14-62 (234)
32 cd07398 MPP_YbbF-LpxH Escheric 33.0 75 0.0016 24.0 4.1 35 5-48 6-40 (217)
33 PRK09968 serine/threonine-spec 29.3 98 0.0021 24.3 4.2 40 20-65 29-68 (218)
34 cd08164 MPP_Ted1 Saccharomyces 28.3 31 0.00068 27.2 1.2 10 39-48 45-54 (193)
35 PRK10328 DNA binding protein, 28.3 35 0.00075 25.5 1.4 26 97-124 93-121 (134)
36 PF07829 Toxin_14: Alpha-A con 25.4 7.9 0.00017 20.6 -1.8 10 115-124 17-26 (26)
37 cd07400 MPP_YydB Bacillus subt 23.9 1.6E+02 0.0034 20.7 4.2 41 5-51 7-48 (144)
38 KOG4068|consensus 21.3 9 0.0002 29.7 -2.9 27 96-126 9-35 (174)
39 cd07422 MPP_ApaH Escherichia c 21.2 2.3E+02 0.005 23.1 5.1 40 19-64 12-51 (257)
40 PF01937 DUF89: Protein of unk 20.4 24 0.00053 29.9 -0.9 17 36-52 293-309 (355)
No 1
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.7e-53 Score=354.87 Aligned_cols=145 Identities=41% Similarity=0.700 Sum_probs=133.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--CCCCCeEEEeCccccccCCCH-HHHHHHHhccchHHHhhhhhhHH
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRT--LNSHDYVFWCGDFNYRIDMDK-DELKELLKHDLLDDVLKFDQLRI 79 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~--~~~~d~vfw~GDlNyRi~~~~-~~v~~~i~~~~~~~Ll~~DQL~~ 79 (151)
|||||+||+.++++||+||.+|++.+.|+.... +.++||+||||||||||++.. ++|.++|+.++|..||++|||..
T Consensus 143 v~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~ 222 (310)
T smart00128 143 VNSHLAAGASNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNR 222 (310)
T ss_pred EeeccccccchhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHH
Confidence 689999999999999999999999999875433 468999999999999999887 89999999999999999999999
Q ss_pred hhhcCcccCCCeecccccCCCCCCC-CCCCCCCCCCCccCCCCCCcccCCCCcccCC--------CCCCCcccccccccC
Q psy3175 80 QQDQGLVFKGFTEGHISFPPTYKYD-LFSDDYDTSEKARAPAWTDRMSVPPPFLFRS--------NGTWNNCYIRRLWPV 150 (151)
Q Consensus 80 ~~~~~~~f~gf~E~~I~F~PTYK~~-~~~~~y~~~~k~R~PswcDRIL~~~~~k~~~--------~~~~~~~~~~~~~pv 150 (151)
+++++.+|.||.|++|+|||||||+ .+++.|++++|+|+|||||||| |++.. ..+.+++.+||||||
T Consensus 223 ~~~~~~~f~~f~E~~I~F~PTYK~~~~~t~~Yd~~~k~R~PsWcDRIL----~~~~~~~~~~~~~Y~s~~~~~~SDHkPV 298 (310)
T smart00128 223 QKEAGKVFKGFQEGPITFPPTYKYDSVGTETYDTSEKKRVPAWCDRIL----YRSNGPNLIQLSEYHSGMELTTSDHKPV 298 (310)
T ss_pred HhhcccccCcCccCCcCCCCCeeecCCCCccccCcccccCcchhheeh----hhccCCCceecccccCCCccCCcCcccc
Confidence 9999999999999999999999999 9999999999999999999999 88521 346788999999999
Q ss_pred C
Q psy3175 151 S 151 (151)
Q Consensus 151 ~ 151 (151)
+
T Consensus 299 ~ 299 (310)
T smart00128 299 F 299 (310)
T ss_pred c
Confidence 5
No 2
>KOG0566|consensus
Probab=100.00 E-value=3e-53 Score=384.34 Aligned_cols=144 Identities=49% Similarity=0.850 Sum_probs=138.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCHHHHHHHHhccchHHHhhhhhhHHhhh
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQD 82 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~ 82 (151)
|++|||||+.++++||.||.+|.++|+|+.+++|..||+|||||||||||+++++||+.+|.+++|+.|+++|||+.||.
T Consensus 678 v~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~ 757 (1080)
T KOG0566|consen 678 VCSHLAAGQSNVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMN 757 (1080)
T ss_pred EecccccccchHhhhhhhHHHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCeecccccCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCcccCCCCC----CCcccccccccC
Q psy3175 83 QGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGT----WNNCYIRRLWPV 150 (151)
Q Consensus 83 ~~~~f~gf~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~~~k~~~~~~----~~~~~~~~~~pv 150 (151)
+|++|.||.|++|+|+|||||+.|+++||||+|+|+|||||||| |+.+.... -.|+++|||+||
T Consensus 758 ~G~vF~gF~E~~ltF~PTYKyD~gTd~YDTSeK~R~PAWTDRIL----~r~e~~~~l~Y~~~el~~SDHRPV 825 (1080)
T KOG0566|consen 758 AGQVFPGFHEGQLTFPPTYKYDPGTDDYDTSEKCRTPAWTDRIL----WRGEKLELLSYKRAELKTSDHRPV 825 (1080)
T ss_pred cCcccccccccccccCCcccccCCCCccccchhccCccchhhhe----eccccccccccccccccccCCCce
Confidence 99999999999999999999999999999999999999999999 99876532 356999999998
No 3
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.4e-51 Score=363.79 Aligned_cols=145 Identities=39% Similarity=0.673 Sum_probs=131.2
Q ss_pred cccCCCCCCCC--HHHHHHHHHHHHHhcCCCC------CCCCCCCCeEEEeCccccccCCCHHHHHHHHhccchHHHhhh
Q psy3175 3 TRLQKAIGGRK--VAERNADYAEITRKVQFPM------GRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKF 74 (151)
Q Consensus 3 ~~~HL~Ag~~~--~~~Rn~d~~~I~~~l~f~~------~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~ 74 (151)
||||||||+++ .++||+||.+|++++.|+. ...|.+||+|||||||||||+++..+|.++|++++|.+||++
T Consensus 425 Vn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~ 504 (621)
T PLN03191 425 VCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINS 504 (621)
T ss_pred EEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHH
Confidence 79999999864 5789999999999999863 246778999999999999999999999999999999999999
Q ss_pred hhhHHhhhcCcccCCCeecccccCCCCCCCCCCCCCC-----CCCCccCCCCCCcccCCCCcccCCCC----CCCccccc
Q psy3175 75 DQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYD-----TSEKARAPAWTDRMSVPPPFLFRSNG----TWNNCYIR 145 (151)
Q Consensus 75 DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~y~-----~~~k~R~PswcDRIL~~~~~k~~~~~----~~~~~~~~ 145 (151)
|||..+++++.+|.||.|++|+|||||||+.+++.|+ +++|+|+|||||||| |++..-. ...++++|
T Consensus 505 DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRIL----ykg~~i~~l~Y~s~ei~~S 580 (621)
T PLN03191 505 DQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRIL----WLGKGIKQLCYKRSEIRLS 580 (621)
T ss_pred hHHHHHHHcCCccCCcccCCccCCCCcccccCCccccccccccccCccccchhheEe----ecCCCceEeEeccCCcccC
Confidence 9999999999999999999999999999999999997 789999999999999 9865321 12679999
Q ss_pred ccccCC
Q psy3175 146 RLWPVS 151 (151)
Q Consensus 146 ~~~pv~ 151 (151)
||+||+
T Consensus 581 DHRPV~ 586 (621)
T PLN03191 581 DHRPVS 586 (621)
T ss_pred Cchhcc
Confidence 999996
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-45 Score=312.94 Aligned_cols=144 Identities=38% Similarity=0.689 Sum_probs=136.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCHHHHHHHHhccc--hHHHhhhhhhHHh
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDL--LDDVLKFDQLRIQ 80 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~--~~~Ll~~DQL~~~ 80 (151)
||+||+||.++.++|+.||..|.+.++|+.+..+.+||++||+|||||||+...+++...+...+ +.+|+++|||..+
T Consensus 170 v~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e 249 (460)
T COG5411 170 VNSHLAAGVNNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWE 249 (460)
T ss_pred EecchhcccccHHHHHHHHHHHHHheecCCCceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhh
Confidence 78999999999999999999999999999999999999999999999999999999999888877 7889999999999
Q ss_pred hhcCcccCCCeecccccCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCcccC-----CCCCCCcccccccccC
Q psy3175 81 QDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFR-----SNGTWNNCYIRRLWPV 150 (151)
Q Consensus 81 ~~~~~~f~gf~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~~~k~~-----~~~~~~~~~~~~~~pv 150 (151)
+..+.+|.||.|..|+|||||||+.|+++|++++|.|+|||||||| +++. ...+++.+++|||+||
T Consensus 250 ~~~g~~f~~f~E~~i~FpPTYKfd~gt~~ydtsdk~RiPsWtDRIl----~~s~~~~p~sY~sip~l~~SDHrPV 320 (460)
T COG5411 250 MEVGNVFPGFKEPVITFPPTYKFDYGTDEYDTSDKGRIPSWTDRIL----YKSEQLTPHSYSSIPHLMISDHRPV 320 (460)
T ss_pred hcccccccceecccccCCCceEeecCCccccccccccCCchhhhhh----hhccccccccccccCceeecCCCeE
Confidence 9999999999999999999999999999999999999999999999 7655 3356777999999998
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.92 E-value=4.2e-26 Score=187.97 Aligned_cols=96 Identities=23% Similarity=0.257 Sum_probs=74.8
Q ss_pred cccCCCCCCCCH-----------HHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCH-HH-HH------HHH
Q psy3175 3 TRLQKAIGGRKV-----------AERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDK-DE-LK------ELL 63 (151)
Q Consensus 3 ~~~HL~Ag~~~~-----------~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~-~~-v~------~~i 63 (151)
||+||.++..++ ..|.++|..|+.++. ..+..++++|||||||||++... .+ +. ..+
T Consensus 85 VNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~----~~~~~~~~lF~fGDfNyRld~~~~~e~L~ek~Ql~ve~ 160 (356)
T PTZ00312 85 LNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS----AFISPSDPLFIFGDFNVRLDGHNLLEWLKEKMQIDVKI 160 (356)
T ss_pred EEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh----hccCCCCcEEEeccceeeeccccHHHHhcccccccccc
Confidence 799999998865 357899999998753 23456799999999999998532 11 11 112
Q ss_pred hc------cchHHHhhhhhhHHhhhc-------------CcccCCCeecccccCCCCC
Q psy3175 64 KH------DLLDDVLKFDQLRIQQDQ-------------GLVFKGFTEGHISFPPTYK 102 (151)
Q Consensus 64 ~~------~~~~~Ll~~DQL~~~~~~-------------~~~f~gf~E~~I~F~PTYK 102 (151)
+. ..|.+||+.|||.++++. .+.|.++.|.+|+||||||
T Consensus 161 ~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~FpPTYk 218 (356)
T PTZ00312 161 EVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFPPTYP 218 (356)
T ss_pred cccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCCCcch
Confidence 22 358999999999999984 6778899999999999999
No 6
>KOG1976|consensus
Probab=99.69 E-value=4.3e-18 Score=141.08 Aligned_cols=126 Identities=24% Similarity=0.366 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCH-----------HH--------HHHHHh-----------
Q psy3175 15 AERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDK-----------DE--------LKELLK----------- 64 (151)
Q Consensus 15 ~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~-----------~~--------v~~~i~----------- 64 (151)
..|-+.+..++.+|.-. -...+.+|+|||||||++... .+ |.+.|-
T Consensus 197 ~~R~~al~~vL~el~~~----~~~~~~~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~ 272 (391)
T KOG1976|consen 197 SKREQALEMVLKELDEE----GLRNDAIFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVT 272 (391)
T ss_pred hhHHHHHHHHHHHHHhh----ccCceEEEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeE
Confidence 47888888888887522 123468999999999997421 11 111111
Q ss_pred ----ccchH-------------HHhhhhhhHHhhhcCcccCC-CeecccccCCCCCCCCCCCCCCCCCCccCCCCCCccc
Q psy3175 65 ----HDLLD-------------DVLKFDQLRIQQDQGLVFKG-FTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMS 126 (151)
Q Consensus 65 ----~~~~~-------------~Ll~~DQL~~~~~~~~~f~g-f~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL 126 (151)
+..|+ .++.+| ++-..|+. +.|..|.|||||.|......--+..+.|+||||||||
T Consensus 273 l~vEkk~FDyfnh~~f~d~~r~~~~~~d------kEl~nf~~kl~E~~i~FpPsypysed~~~~E~~m~TrcPAWcDRIL 346 (391)
T KOG1976|consen 273 LTVEKKRFDYFNHDWFFDLGRGMVKRYD------KELANFAFKLKEETIFFPPSYPYSEDDSGKEEFMRTRCPAWCDRIL 346 (391)
T ss_pred EEeehhhcchhhhHHHHHcCchhhhhcc------hHHHHHHHHHhheeecCCCCCCCCcCccchHHHHhccChHhhhhhh
Confidence 01111 111222 12223443 8899999999999987654333344799999999999
Q ss_pred CCCCcccC-------CC----CC-CCcccccccccC
Q psy3175 127 VPPPFLFR-------SN----GT-WNNCYIRRLWPV 150 (151)
Q Consensus 127 ~~~~~k~~-------~~----~~-~~~~~~~~~~pv 150 (151)
|++..++- +. .. .++.-+-|||||
T Consensus 347 mn~~a~eLv~~~e~e~~~~~Y~~vg~e~c~GdHKpV 382 (391)
T KOG1976|consen 347 MNDRANELVKHDEFEASGLYYGLVGEEKCVGDHKPV 382 (391)
T ss_pred cCccHHHHhhccccCcccceecccccccccCCCcce
Confidence 98754321 11 11 355667999998
No 7
>KOG0565|consensus
Probab=99.45 E-value=6.9e-14 Score=104.59 Aligned_cols=74 Identities=35% Similarity=0.499 Sum_probs=61.6
Q ss_pred CcccCCCCCCCCHHH-HHHHHHHHHHhcCCCCCC------CCC-CCCeEEEeCccccccCCC-HHHHHHHHhccchHHHh
Q psy3175 2 DTRLQKAIGGRKVAE-RNADYAEITRKVQFPMGR------TLN-SHDYVFWCGDFNYRIDMD-KDELKELLKHDLLDDVL 72 (151)
Q Consensus 2 ~~~~HL~Ag~~~~~~-Rn~d~~~I~~~l~f~~~~------~~~-~~d~vfw~GDlNyRi~~~-~~~v~~~i~~~~~~~Ll 72 (151)
.++|||+||.++..+ ||+|+.+|++.+.|+... .+. .+|.|||+||||||+..+ ..++...+....+..|+
T Consensus 63 ~v~~hl~~~~~~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~ 142 (145)
T KOG0565|consen 63 FVISHLTSGVHKVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLL 142 (145)
T ss_pred EEEecccccchhhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhh
Confidence 478999999999998 999999999999997431 112 279999999999999976 77778888888888887
Q ss_pred hhh
Q psy3175 73 KFD 75 (151)
Q Consensus 73 ~~D 75 (151)
+.|
T Consensus 143 ~~d 145 (145)
T KOG0565|consen 143 EKD 145 (145)
T ss_pred ccC
Confidence 765
No 8
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.51 E-value=0.0001 Score=60.62 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=27.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFN 49 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlN 49 (151)
+|+||.=.+ ..|.++...|++.+.++.. ..+++|||||
T Consensus 137 ~~~HL~l~~---~~R~~Q~~~L~~~~~l~~~------~p~vl~GDFN 174 (259)
T COG3568 137 INAHLGLSE---ESRLRQAAALLALAGLPAL------NPTVLMGDFN 174 (259)
T ss_pred EEEeccccH---HHHHHHHHHHHhhccCccc------CceEEEccCC
Confidence 578888444 4599999999995444321 2799999999
No 9
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=97.40 E-value=0.00087 Score=55.45 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=33.4
Q ss_pred cccCCCCCCC------CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGR------KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~------~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+|.||.+... ....|..++.+|.+.+... .+.....+|++||||..-+
T Consensus 138 ~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~---~~~~~~pvIl~GDfN~~~~ 191 (283)
T TIGR03395 138 IGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSK---NIPKDETVLIGGDLNVNKG 191 (283)
T ss_pred EEeCCCCCcccccccccHHHHHHHHHHHHHHHhhc---cCCCCceEEEEeeCCCCCC
Confidence 4779988532 2567999999998876421 2333456999999997643
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=97.26 E-value=2.4e-06 Score=64.88 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=23.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCC
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDM 54 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~ 54 (151)
+++|+.++......+...+...+..+... .....+|++||||.+.+-
T Consensus 125 ~~~H~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 125 VNVHLPSSNDERQEQWRELLARIQKIYAD-----NPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp EEEETTSHHHHHHHHHHHHHHHHHHHHHT-----SSCCEEEEEEE-SS-BSS
T ss_pred eeccccccchhhhhhhhhhhhhhhhcccc-----cccceEEEEeecccCCcc
Confidence 57899884433332222333333332211 111169999999999874
No 11
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.65 E-value=0.0014 Score=51.74 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=28.4
Q ss_pred cccCCCCCC----CCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGG----RKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~----~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+++|++++. .....|.+.+..+.+.+.- .+.....++++||||--..
T Consensus 105 ~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~~----~~~~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 105 VNVYVPNGGSRGLERLEYKLQFWDALFQYYEK----ELDAGKPVIICGDMNVAHT 155 (255)
T ss_pred EEEEccCCCCCCchhHHHHHHHHHHHHHHHHH----HHhcCCcEEEEeecccCCC
Confidence 467888765 2345576667666554310 0112346999999997553
No 12
>PTZ00297 pantothenate kinase; Provisional
Probab=94.50 E-value=0.06 Score=53.75 Aligned_cols=47 Identities=9% Similarity=0.030 Sum_probs=25.1
Q ss_pred cccCCCCCCCCH--HHHHHHHHHHHHh-cC-CCCCCCCCCCCeEEEeCccc
Q psy3175 3 TRLQKAIGGRKV--AERNADYAEITRK-VQ-FPMGRTLNSHDYVFWCGDFN 49 (151)
Q Consensus 3 ~~~HL~Ag~~~~--~~Rn~d~~~I~~~-l~-f~~~~~~~~~d~vfw~GDlN 49 (151)
+++||.+..... .+|.+.+.+++.. +. +...........+++.||||
T Consensus 155 ~~tHL~~~~~~~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN 205 (1452)
T PTZ00297 155 FNVHLRQEDSLPSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFN 205 (1452)
T ss_pred EEeCCCCCCCcchHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCC
Confidence 467999875532 2344444444443 21 11112222335799999999
No 13
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=94.28 E-value=0.084 Score=42.94 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=21.1
Q ss_pred CC-CCcccCCCCcccCCCC--CCCcccccccccC
Q psy3175 120 AW-TDRMSVPPPFLFRSNG--TWNNCYIRRLWPV 150 (151)
Q Consensus 120 sw-cDRIL~~~~~k~~~~~--~~~~~~~~~~~pv 150 (151)
+| =|.||+++.|...-.+ -..+...|||-||
T Consensus 212 g~RIDyilvs~~~~~~~~~~~i~~~~~~SDH~Pv 245 (250)
T PRK13911 212 GWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPV 245 (250)
T ss_pred cceEEEEEEChHHhhhEEEEEECCCCCCCCcccE
Confidence 44 4999998877644322 2345667999998
No 14
>PRK05421 hypothetical protein; Provisional
Probab=93.47 E-value=0.085 Score=42.84 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=30.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNY 50 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNy 50 (151)
+|+||.+.......|.+++..|.+.+.-. ...++++||||-
T Consensus 153 ~ntHl~~~~~~~~~r~~q~~~l~~~~~~~-------~~p~Il~GDFN~ 193 (263)
T PRK05421 153 VNIHAINFSLGVDVYSKQLEPIGDQIAHH-------SGPVILAGDFNT 193 (263)
T ss_pred EEECccccCcChHHHHHHHHHHHHHHHhC-------CCCEEEEccccc
Confidence 58899876445677888888888766311 235999999994
No 15
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=93.20 E-value=0.0054 Score=42.76 Aligned_cols=32 Identities=9% Similarity=-0.105 Sum_probs=18.0
Q ss_pred CCCCCcccCCCCcccC-CCCCCCcccccccccC
Q psy3175 119 PAWTDRMSVPPPFLFR-SNGTWNNCYIRRLWPV 150 (151)
Q Consensus 119 PswcDRIL~~~~~k~~-~~~~~~~~~~~~~~pv 150 (151)
.|-=|+||+++.+... ..........|||.||
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I 118 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPI 118 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--E
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCC
Confidence 4557999977666655 1122345777999998
No 16
>PRK11756 exonuclease III; Provisional
Probab=91.25 E-value=0.14 Score=41.24 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=26.1
Q ss_pred cccCCCCCCC-----CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGR-----KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+|++.+.. +...|.+.+..|...+.-- ......++++||||--.
T Consensus 106 ~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~----~~~~~pvIl~GDfN~~~ 156 (268)
T PRK11756 106 INGYFPQGESRDHPTKFPAKRQFYQDLQNYLETE----LSPDNPLLIMGDMNISP 156 (268)
T ss_pred EEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHH----hccCCCEEEEeecccCC
Confidence 4788887642 3334555555555444210 11234699999999644
No 17
>KOG2756|consensus
Probab=87.23 E-value=0.48 Score=39.85 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=35.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
.++||.+-.....+|.++|...+.+++--- .+.+.-.||+-||+|.|=.
T Consensus 209 ~tsHLEStr~h~P~r~~qF~~~~~k~~EaI--e~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 209 MTSHLESTRGHAPERMNQFKMVLKKMQEAI--ESLPNATVIFGGDTNLRDR 257 (349)
T ss_pred EeccccCCCCCChHHHHHHHHHHHHHHHHH--HhCCCceEEEcCcccchhh
Confidence 368999988888999999998887764100 0123345999999999864
No 18
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=85.97 E-value=0.74 Score=42.33 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=40.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCHHHHHHHHhccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDL 67 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~ 67 (151)
+|.||..+.....-|..+...|++.+.--... ..-.+|++||||- .+.+.+.++|.+|.
T Consensus 422 aNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~---~~~PvIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 422 ANTHIHANQELKDVKLWQVHTLLKGLEKIAAS---ADIPMLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred EEeeeccCCccchhHHHHHHHHHHHHHHHhhc---CCCceEEeccCCC---CCCChhhhhhhcCC
Confidence 47899888777777888888888776421000 1125999999995 44456777777764
No 19
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=82.60 E-value=1 Score=35.89 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=26.9
Q ss_pred cccCCCCCCC----CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGR----KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~----~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+|+|++++.. ....|.+-+..|...+.-- ......+|++||||-..+
T Consensus 102 ~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~~~----~~~~~pvIi~GDfN~~~~ 152 (254)
T TIGR00195 102 INGYFPNGSRDDSEKLPYKLQWLEALQNYLEKL----VDKDKPVLICGDMNIAPT 152 (254)
T ss_pred EEEEccCCCCCCCccHHHHHHHHHHHHHHHHHH----HhcCCcEEEEeecccCCC
Confidence 4678887422 3445656555555554210 011245999999996553
No 20
>KOG3873|consensus
Probab=77.57 E-value=2.4 Score=37.00 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=34.2
Q ss_pred ccCCCC-----CCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC-CCH
Q psy3175 4 RLQKAI-----GGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID-MDK 56 (151)
Q Consensus 4 ~~HL~A-----g~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~-~~~ 56 (151)
|.||.| ++..+..|..+--++-+-++ .+....|.|++.||||-+-. ++.
T Consensus 134 ntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~----~t~q~~~vVI~~GDLN~~P~dl~~ 188 (422)
T KOG3873|consen 134 NTHLHAEYDRQNDEYLCHRVAQAWDLAQFIR----ATRQNADVVILAGDLNMQPQDLGH 188 (422)
T ss_pred ehhccccccccCchhhhHHHHHHHHHHHHHH----HHhcCCcEEEEecCCCCCccccce
Confidence 567777 34456788887777766654 23355799999999998873 553
No 21
>KOG2338|consensus
Probab=76.71 E-value=1 Score=40.32 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=35.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCC-CCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQF-PMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f-~~~~~~~~~d~vfw~GDlNyRi 52 (151)
.|.||--+......|..+..-|+.++.- ..... .+=.+|++||||--=
T Consensus 257 anTHLl~np~~~~vrL~Q~~iiL~~~~~~~~~~~--~~~pi~l~GDfNt~p 305 (495)
T KOG2338|consen 257 ANTHLLFNPSRSDVRLAQVYIILAELEKMSKSSK--SHWPIFLCGDFNTEP 305 (495)
T ss_pred EeeeeeecCcccchhhHHHHHHHHHHHHHHhhcc--cCCCeEEecCCCCCC
Confidence 4789988988888999999999998741 11111 334799999999654
No 22
>KOG3870|consensus
Probab=68.72 E-value=2 Score=37.75 Aligned_cols=17 Identities=41% Similarity=0.741 Sum_probs=14.8
Q ss_pred CCCCCeEEEeCcccccc
Q psy3175 36 LNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 36 ~~~~d~vfw~GDlNyRi 52 (151)
+..++.||+=||||||=
T Consensus 349 L~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYRK 365 (434)
T ss_pred HhhCcEEEEeccccHHH
Confidence 45788999999999995
No 23
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=68.24 E-value=3.9 Score=33.97 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=23.8
Q ss_pred cccCCCCCCCCHHHHHHHHHH-HHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGRKVAERNADYAE-ITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~-I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
|++|+.... ..++.+.+.+ ++.... . .. .+-|+++||||--.+
T Consensus 147 i~~H~~p~~--~~~e~~aL~~v~~~~~~-~----~~-~~~villGDFNa~~~ 190 (276)
T smart00476 147 VPLHTTPEA--AVAEIDALYDVYLDVRQ-K----WG-TEDVIFMGDFNAGCS 190 (276)
T ss_pred EEecCChHH--HHHHHHHHHHHHHHHHH-h----hc-cCCEEEEccCCCCCC
Confidence 578998753 2344544333 222211 0 11 244999999998654
No 24
>PHA01474 nonstructural protein
Probab=59.59 E-value=2.2 Score=26.04 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCcccCCC
Q psy3175 99 PTYKYDLFSDDYDTSEKARAPAWTDRMSVPP 129 (151)
Q Consensus 99 PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~ 129 (151)
-||.|.+.+.-|. |-||+++|
T Consensus 9 ttyeysrfssfws----------cariilsp 29 (52)
T PHA01474 9 TTYEYSRFSSFWS----------CARIILSP 29 (52)
T ss_pred ceeeehhhhhhhh----------hhheeeCc
Confidence 4777777766554 89998775
No 25
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=49.03 E-value=35 Score=26.89 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 14 VAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 14 ~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
..+|.+.+.++++++. .+-|.|++.|||-.+-.
T Consensus 24 ~~~~~~~i~~~~~~~~-------~~~D~viiaGDl~~~~~ 56 (232)
T cd07393 24 WKNHTEKIKENWDNVV-------APEDIVLIPGDISWAMK 56 (232)
T ss_pred HHHHHHHHHHHHHhcC-------CCCCEEEEcCCCccCCC
Confidence 3567777777777764 25799999999975443
No 26
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=47.29 E-value=24 Score=29.44 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=25.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccc
Q psy3175 4 RLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFN 49 (151)
Q Consensus 4 ~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlN 49 (151)
+.||.|... ..|.+.+..|.....-. ....-.+++||||
T Consensus 156 stH~~a~~~--~da~aiV~~I~~~f~~~-----~~~~pw~I~GDFN 194 (271)
T PRK15251 156 SIHALANGG--TDAGAIVRAVHNFFRPN-----MRHINWMIAGDFN 194 (271)
T ss_pred EeeecCCCC--ccHHHHHHHHHHHHhhc-----cCCCCEEEeccCC
Confidence 679988731 22777777777765311 1124589999999
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=41.51 E-value=49 Score=25.89 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC--CCHHHHHHHHhc
Q psy3175 19 ADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID--MDKDELKELLKH 65 (151)
Q Consensus 19 ~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~--~~~~~v~~~i~~ 65 (151)
..+..+++.+.+. ...|.+|++||+ |+ ....+|++++.+
T Consensus 30 ~~L~~lL~~i~~~-----~~~D~li~lGDl---vDrGp~s~~vl~~l~~ 70 (218)
T PRK11439 30 EQLMRKLRHCRFD-----PWRDLLISVGDL---IDRGPQSLRCLQLLEE 70 (218)
T ss_pred HHHHHHHHhcCCC-----cccCEEEEcCcc---cCCCcCHHHHHHHHHc
Confidence 4455667776543 235889999999 55 345677777765
No 28
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=38.25 E-value=20 Score=26.77 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=15.6
Q ss_pred cCCCCCC-CCCC--CCCCCCCCccCCCCC
Q psy3175 97 FPPTYKY-DLFS--DDYDTSEKARAPAWT 122 (151)
Q Consensus 97 F~PTYK~-~~~~--~~y~~~~k~R~Pswc 122 (151)
=||-||| +... ..|. ..-|.|.|-
T Consensus 93 ~paKYky~dp~G~~~TWT--GrGR~P~wi 119 (135)
T PRK10947 93 RPAKYSYVDENGETKTWT--GQGRTPAVI 119 (135)
T ss_pred CCCCCcccCCCCCcCccc--CCCCCCHHH
Confidence 3789998 4322 2443 468999994
No 29
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=35.83 E-value=9.8 Score=23.98 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=5.0
Q ss_pred CCCCCC
Q psy3175 98 PPTYKY 103 (151)
Q Consensus 98 ~PTYK~ 103 (151)
.|||||
T Consensus 45 NPTYky 50 (52)
T PF10515_consen 45 NPTYKY 50 (52)
T ss_dssp SCTCHH
T ss_pred CCceec
Confidence 499997
No 30
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=35.43 E-value=39 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=25.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q psy3175 5 LQKAIGGRKVAERNADYAEITRKVQFPMG 33 (151)
Q Consensus 5 ~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~ 33 (151)
||.-+|..+..+|.+.+.+++..+..+..
T Consensus 67 CHy~~GN~ka~rR~~~lke~l~elgie~e 95 (132)
T COG1908 67 CHYISGNYKAKRRMELLKELLKELGIEPE 95 (132)
T ss_pred eeeeccchHHHHHHHHHHHHHHHhCCCcc
Confidence 78889999999999999999999876533
No 31
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=33.99 E-value=1.2e+02 Score=23.79 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCC---CC-CCCCeEEEeCccccccCCCHHHHHHHHh
Q psy3175 19 ADYAEITRKVQFPMGR---TL-NSHDYVFWCGDFNYRIDMDKDELKELLK 64 (151)
Q Consensus 19 ~d~~~I~~~l~f~~~~---~~-~~~d~vfw~GDlNyRi~~~~~~v~~~i~ 64 (151)
..+..+++.+.|.... .. ...|.++++||+=-|= ....+|++++.
T Consensus 14 ~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG-~~s~evl~~l~ 62 (234)
T cd07423 14 DELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRG-PDSPEVLRLVM 62 (234)
T ss_pred HHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCC-CCHHHHHHHHH
Confidence 3566788888765321 11 1358999999993332 23456666553
No 32
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=32.96 E-value=75 Score=24.04 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=21.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcc
Q psy3175 5 LQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDF 48 (151)
Q Consensus 5 ~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDl 48 (151)
+||..+..........+..... ....+.++++||+
T Consensus 6 lHlg~~~~~~~~~~~~~~~~~~---------~~~~~~lvl~GDi 40 (217)
T cd07398 6 LHLGDGGPAADFLLLFLLAALA---------LGEADALYLLGDI 40 (217)
T ss_pred ecCCCCCCCHHHHHHHHHhhhc---------cCCCCEEEEeccE
Confidence 6888877766554433322111 1345889999998
No 33
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=29.32 E-value=98 Score=24.29 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCHHHHHHHHhc
Q psy3175 20 DYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKH 65 (151)
Q Consensus 20 d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~ 65 (151)
.+..++..+.|. ...|.+|.+||+=-|= ....++.+++.+
T Consensus 29 ~l~~~l~~~~~~-----~~~d~l~~lGD~vdrG-~~~~~~l~~l~~ 68 (218)
T PRK09968 29 LLQSRLHQLSFC-----PETDLLISVGDNIDRG-PESLNVLRLLNQ 68 (218)
T ss_pred HHHHHHHhcCCC-----CCCCEEEECCCCcCCC-cCHHHHHHHHhh
Confidence 344556665442 2358999999994442 334566666654
No 34
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=28.34 E-value=31 Score=27.20 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=9.0
Q ss_pred CCeEEEeCcc
Q psy3175 39 HDYVFWCGDF 48 (151)
Q Consensus 39 ~d~vfw~GDl 48 (151)
=|+||++|||
T Consensus 45 Pd~V~fLGDL 54 (193)
T cd08164 45 PDAVVVLGDL 54 (193)
T ss_pred CCEEEEeccc
Confidence 3889999999
No 35
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=28.31 E-value=35 Score=25.46 Aligned_cols=26 Identities=19% Similarity=0.489 Sum_probs=16.7
Q ss_pred cCCCCCC-CCCC--CCCCCCCCccCCCCCCc
Q psy3175 97 FPPTYKY-DLFS--DDYDTSEKARAPAWTDR 124 (151)
Q Consensus 97 F~PTYK~-~~~~--~~y~~~~k~R~PswcDR 124 (151)
=||-|+| +.+. ..|. ..-|.|.|--.
T Consensus 93 ~p~KYr~~d~~G~~kTWT--GrGR~P~wi~~ 121 (134)
T PRK10328 93 RPAKYRFTDVNGETKTWT--GQGRTPKPIAQ 121 (134)
T ss_pred CCCccCCCCCCCCcCccc--CCCCCcHHHHH
Confidence 4788998 4422 3453 46899999643
No 36
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=25.37 E-value=7.9 Score=20.56 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=5.3
Q ss_pred CccCCCCCCc
Q psy3175 115 KARAPAWTDR 124 (151)
Q Consensus 115 k~R~PswcDR 124 (151)
|--.|+||||
T Consensus 17 kv~rp~yc~~ 26 (26)
T PF07829_consen 17 KVGRPPYCDR 26 (26)
T ss_dssp TST--HHHHS
T ss_pred ccCCCCcCCC
Confidence 3456888886
No 37
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=23.93 E-value=1.6e+02 Score=20.72 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=22.6
Q ss_pred cCCCCCCCCHHH-HHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccc
Q psy3175 5 LQKAIGGRKVAE-RNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYR 51 (151)
Q Consensus 5 ~HL~Ag~~~~~~-Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyR 51 (151)
+||......... +...+..++..+. -...|.|+++|||-..
T Consensus 7 ~Hl~~~~~~~~~~~~~~l~~~~~~~~------~~~~d~vi~~GDl~~~ 48 (144)
T cd07400 7 LHFGPERKPELLALLSLLDRLLAEIK------ALDPDLVVITGDLTQR 48 (144)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHHh------ccCCCEEEECCCCCCC
Confidence 577765443332 2222334444432 1236899999999554
No 38
>KOG4068|consensus
Probab=21.31 E-value=9 Score=29.68 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=22.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCccCCCCCCccc
Q psy3175 96 SFPPTYKYDLFSDDYDTSEKARAPAWTDRMS 126 (151)
Q Consensus 96 ~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL 126 (151)
+|||=|--.++.+..+ +..-+|||=||
T Consensus 9 ~FPPffT~Qpn~~Tr~----qQl~aW~~lil 35 (174)
T KOG4068|consen 9 SFPPFFTRQPNSNTRQ----QQLAAWIDLIL 35 (174)
T ss_pred CCCCceeecCCchhHH----HHHHHHHHHHH
Confidence 7999998888776554 77889999998
No 39
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=21.20 E-value=2.3e+02 Score=23.09 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCHHHHHHHHh
Q psy3175 19 ADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLK 64 (151)
Q Consensus 19 ~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~ 64 (151)
..+..++..+.|. ...|.++++||+=-|= ....+|++.+.
T Consensus 12 ~~L~~LL~~i~~~-----~~~D~Li~lGDlVdRG-p~s~evl~~l~ 51 (257)
T cd07422 12 DELQRLLEKINFD-----PAKDRLWLVGDLVNRG-PDSLETLRFVK 51 (257)
T ss_pred HHHHHHHHhcCCC-----CCCCEEEEecCcCCCC-cCHHHHHHHHH
Confidence 3456777777654 2358999999993332 23345555543
No 40
>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins. Those with structural information consist of two domains: an all-alpha domain with a 3-helical bundle fold, and an alpha-beta domain in 3 layers, alpha/beta/alpha. ; PDB: 2FFJ_B 1XFI_A 2Q40_A 2G8L_B 3PT1_A.
Probab=20.36 E-value=24 Score=29.95 Aligned_cols=17 Identities=47% Similarity=0.817 Sum_probs=14.1
Q ss_pred CCCCCeEEEeCcccccc
Q psy3175 36 LNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 36 ~~~~d~vfw~GDlNyRi 52 (151)
+..+|.||+=||+|||-
T Consensus 293 l~~adLVI~KG~~Nyr~ 309 (355)
T PF01937_consen 293 LSEADLVIFKGDLNYRK 309 (355)
T ss_dssp HCC-SEEEEEHHHHHHH
T ss_pred HhhCCEEEEeCCHHHhh
Confidence 35789999999999996
Done!