Query psy3175
Match_columns 151
No_of_seqs 110 out of 935
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:16:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 4.7E-57 1.6E-61 375.8 10.3 145 3-151 140-296 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 6.1E-55 2.1E-59 363.5 11.6 145 3-151 142-306 (316)
3 2xsw_A 72 kDa inositol polypho 100.0 1.9E-52 6.4E-57 353.4 12.2 145 3-151 148-315 (357)
4 1i9z_A Synaptojanin, phosphati 100.0 4.5E-50 1.5E-54 337.6 9.7 144 3-151 163-310 (347)
5 2imq_X Salivary nitrophorin; f 100.0 8.1E-44 2.8E-48 290.3 3.9 136 3-151 132-275 (282)
6 3teb_A Endonuclease/exonucleas 98.1 5.7E-07 1.9E-11 69.2 1.8 43 3-53 140-182 (266)
7 4f1h_A Tyrosyl-DNA phosphodies 97.9 3.7E-06 1.3E-10 62.3 2.6 44 3-51 113-156 (250)
8 4gz1_A Tyrosyl-DNA phosphodies 97.9 4.8E-06 1.7E-10 62.8 3.2 44 3-51 119-162 (256)
9 4fva_A 5'-tyrosyl-DNA phosphod 97.6 1.2E-05 4E-10 60.8 0.4 48 3-52 123-170 (256)
10 3g6s_A Putative endonuclease/e 97.5 2.9E-05 1E-09 60.1 2.2 42 3-51 135-176 (267)
11 3i41_A Beta-hemolysin; beta to 97.5 0.00014 4.7E-09 58.7 5.4 48 3-53 167-220 (317)
12 3mpr_A Putative endonuclease/e 97.2 0.00022 7.4E-09 56.6 3.4 45 3-52 139-183 (298)
13 4gew_A 5'-tyrosyl-DNA phosphod 97.2 0.00019 6.4E-09 59.5 3.1 48 3-52 229-276 (362)
14 1zwx_A SMCL, sphingomyelinase- 97.1 0.00027 9.3E-09 55.4 3.0 48 3-53 148-201 (301)
15 3l1w_A Uncharacterized protein 96.8 0.00032 1.1E-08 53.7 1.4 42 3-51 129-170 (257)
16 1wdu_A TRAS1 ORF2P; four-layer 96.6 0.0011 3.7E-08 50.8 2.8 40 3-52 120-159 (245)
17 3g91_A MTH0212, exodeoxyribonu 96.4 0.00049 1.7E-08 53.2 -0.3 46 3-52 108-156 (265)
18 2j63_A AP-endonuclease; base e 95.1 0.0065 2.2E-07 52.4 1.4 29 122-150 430-460 (467)
19 1ako_A Exonuclease III; AP-end 94.5 0.011 3.8E-07 44.8 1.4 47 3-53 106-157 (268)
20 2ddr_A Sphingomyelin phosphodi 93.3 0.027 9.3E-07 43.8 1.5 47 3-52 148-200 (306)
21 2jc4_A Exodeoxyribonuclease II 93.2 0.022 7.7E-07 42.8 0.9 47 3-53 102-152 (256)
22 2voa_A AF_EXO, XTHA, exodeoxyr 91.4 0.068 2.3E-06 40.3 1.6 46 3-52 102-151 (257)
23 2o3h_A DNA-(apurinic or apyrim 91.4 0.034 1.2E-06 43.0 -0.2 45 3-52 135-182 (285)
24 3ngq_A CCR4-NOT transcription 90.3 0.17 5.6E-06 42.7 3.1 62 3-67 200-270 (398)
25 2jc5_A Exodeoxyribonuclease; h 90.1 0.16 5.5E-06 38.0 2.6 47 3-53 106-155 (259)
26 1hd7_A DNA-(apurinic or apyrim 88.5 0.091 3.1E-06 41.7 0.1 45 3-52 168-215 (318)
27 2a40_B Deoxyribonuclease-1; WA 87.4 0.12 4E-06 39.8 0.1 44 3-53 131-174 (260)
28 1vyb_A ORF2 contains A reverse 82.2 0.52 1.8E-05 34.6 1.6 39 3-52 112-150 (238)
29 2ei9_A Non-LTR retrotransposon 77.8 1.6 5.6E-05 33.4 3.3 40 3-52 93-132 (240)
30 4b8c_D Glucose-repressible alc 77.1 0.48 1.7E-05 42.3 0.0 61 3-66 552-619 (727)
31 2o3h_A DNA-(apurinic or apyrim 72.0 0.44 1.5E-05 36.5 -1.5 30 121-150 248-279 (285)
32 2yka_B ORF57 protein, 52 kDa i 72.8 0.93 3.2E-05 23.4 0.0 9 118-126 8-16 (26)
33 1hd7_A DNA-(apurinic or apyrim 64.4 0.79 2.7E-05 36.2 -1.5 29 122-150 282-312 (318)
34 3pt1_A UPF0364 protein YMR027W 60.8 1.3 4.5E-05 38.3 -0.8 17 36-52 374-390 (471)
35 1sr4_B CDT B, cytolethal diste 57.5 5.1 0.00018 31.9 2.2 45 3-49 135-179 (261)
36 1p1p_A AA-conotoxin PIVA; neur 45.5 4.2 0.00014 20.9 -0.1 10 116-125 17-26 (26)
37 2f1n_A CDT B, cytolethal diste 38.1 10 0.00035 30.3 1.1 46 4-52 145-190 (262)
38 1hnr_A H-NS; histone-like prot 28.0 19 0.00063 21.3 0.8 23 98-122 4-29 (47)
39 1pqr_A Alpha-A-conotoxin EIVA; 26.7 6.6 0.00022 20.8 -1.2 11 115-125 17-27 (31)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=4.7e-57 Score=375.76 Aligned_cols=145 Identities=40% Similarity=0.662 Sum_probs=135.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCC------CCCCCCCeEEEeCccccccC-CCHHHHHHHHhccchHHHhhhh
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMG------RTLNSHDYVFWCGDFNYRID-MDKDELKELLKHDLLDDVLKFD 75 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~------~~~~~~d~vfw~GDlNyRi~-~~~~~v~~~i~~~~~~~Ll~~D 75 (151)
||||||||++++++||+||.+|++++.|+.. ..+.+||+|||+|||||||+ ++.++|.++|++++|..||++|
T Consensus 140 VnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~D 219 (313)
T 3mtc_A 140 VNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYD 219 (313)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTB
T ss_pred EeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhH
Confidence 7999999999999999999999999998642 35789999999999999996 8999999999999999999999
Q ss_pred hhHHhhhcCcccCCCeecccccCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCcccCCC-----CCCCcccccccccC
Q psy3175 76 QLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSN-----GTWNNCYIRRLWPV 150 (151)
Q Consensus 76 QL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~~~k~~~~-----~~~~~~~~~~~~pv 150 (151)
||+.+|+++.+|.||.|++|+|||||||+.+++.||+++|+|+|||||||| |++.+- .+++++++||||||
T Consensus 220 QL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts~k~R~PsWcDRIL----~~~~~i~~~~Y~s~~~~~~SDHrPV 295 (313)
T 3mtc_A 220 QLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRIL----WKGKNITQLSYQSHMALKTSDHKPV 295 (313)
T ss_dssp HHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEE----EEESSEEEEEEEECTTCCSSSSCCE
T ss_pred HHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccccCEecccccceEE----EecCCeEEEeeeeccCccCCCccCe
Confidence 999999999999999999999999999999999999999999999999999 997642 35688999999999
Q ss_pred C
Q psy3175 151 S 151 (151)
Q Consensus 151 ~ 151 (151)
+
T Consensus 296 ~ 296 (313)
T 3mtc_A 296 S 296 (313)
T ss_dssp E
T ss_pred E
Confidence 5
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=6.1e-55 Score=363.50 Aligned_cols=145 Identities=30% Similarity=0.545 Sum_probs=127.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCC-----CCCCCCCeEEEeCccccccCCCHHHHHHHHhccchHHHhhhhhh
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMG-----RTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQL 77 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~-----~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL 77 (151)
||||||||++++++||+||.+|++++.|+.. .....+|||||+|||||||+++.++|+++|++++|..||++|||
T Consensus 142 Vn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL 221 (316)
T 4a9c_A 142 VNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQL 221 (316)
T ss_dssp EEEECCCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHH
T ss_pred EEeccccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChH
Confidence 7999999999999999999999999998642 22457899999999999999999999999999999999999999
Q ss_pred HHhhhcCcccCCCeecccccCCCCCCCCCCC-CCC------CCCCccCCCCCCcccCCCCcccCCCC--------CCCcc
Q psy3175 78 RIQQDQGLVFKGFTEGHISFPPTYKYDLFSD-DYD------TSEKARAPAWTDRMSVPPPFLFRSNG--------TWNNC 142 (151)
Q Consensus 78 ~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~-~y~------~~~k~R~PswcDRIL~~~~~k~~~~~--------~~~~~ 142 (151)
+.+|+++.+|.||.|++|+|||||||+.+++ .|+ +++|+|+|||||||| |++.+.. +++++
T Consensus 222 ~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL----~~~~~~~~i~~~~Y~s~~~~ 297 (316)
T 4a9c_A 222 NLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRIL----WKSYPETHIICNSYGCTDDI 297 (316)
T ss_dssp HHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEE----EEECTTCCEEEEEEEECSSC
T ss_pred HHHHhcCCcccccccCCcccCCCccccCCCcccccccccccccccccCCcccceEE----eccCCCCceEEeeecccCCc
Confidence 9999999999999999999999999999995 464 456789999999999 9987653 46789
Q ss_pred cccccccCC
Q psy3175 143 YIRRLWPVS 151 (151)
Q Consensus 143 ~~~~~~pv~ 151 (151)
++||||||+
T Consensus 298 ~~SDHrPV~ 306 (316)
T 4a9c_A 298 VTSDHSPVF 306 (316)
T ss_dssp CSSSSCCEE
T ss_pred CCCCcccEE
Confidence 999999994
No 3
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.9e-52 Score=353.35 Aligned_cols=145 Identities=34% Similarity=0.556 Sum_probs=132.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCC------------CCCCCCeEEEeCccccccCCCHHHHHHHHh---ccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGR------------TLNSHDYVFWCGDFNYRIDMDKDELKELLK---HDL 67 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~------------~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~---~~~ 67 (151)
|||||+||++++++||+||.+|++.+.|+... .+..+|+|||+|||||||+++.+++.++|+ .++
T Consensus 148 vn~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~ 227 (357)
T 2xsw_A 148 ITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVD 227 (357)
T ss_dssp EEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCC
T ss_pred EEEccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhh
Confidence 68999999999999999999999999986432 234689999999999999999999999886 478
Q ss_pred hHHHhhhhhhHHhhhcCcccCCCeecccccCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCcccCCCC--------CC
Q psy3175 68 LDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNG--------TW 139 (151)
Q Consensus 68 ~~~Ll~~DQL~~~~~~~~~f~gf~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~~~k~~~~~--------~~ 139 (151)
|..||++|||+.+++++.+|.||.|++|+|||||||+.+++.||+++|+|+|||||||| |++.+.. ++
T Consensus 228 ~~~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydts~k~R~PaWcDRIL----~~~~~~~~i~~~~Y~s~ 303 (357)
T 2xsw_A 228 VPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVL----YRSRHKGDICPVSYSSC 303 (357)
T ss_dssp HHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEE----EEESSTTSEEEEEEEEC
T ss_pred HHHHHhcChhHHHHhccccccCccccCCCCCCCccccCCCccccccCCCCCCcccceEE----EecCCCCceEEEEeEec
Confidence 99999999999999999999999999999999999999999999999999999999999 9986543 45
Q ss_pred CcccccccccCC
Q psy3175 140 NNCYIRRLWPVS 151 (151)
Q Consensus 140 ~~~~~~~~~pv~ 151 (151)
+++++||||||+
T Consensus 304 ~~~~~SDHrPV~ 315 (357)
T 2xsw_A 304 PGIKTSDHRPVY 315 (357)
T ss_dssp TTCCSSSSCCEE
T ss_pred ccccCCCcCCce
Confidence 789999999994
No 4
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=4.5e-50 Score=337.57 Aligned_cols=144 Identities=40% Similarity=0.654 Sum_probs=133.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCHHHHHHHHhccchHHHhhhhhhHHhhh
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQD 82 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~ 82 (151)
|||||+||+.++++||+||.+|++++.|+....+.++|++||+||||||++++.++|.++|++++|..||++|||..+++
T Consensus 163 vn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~ 242 (347)
T 1i9z_A 163 ITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQML 242 (347)
T ss_dssp EEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHH
T ss_pred EEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHh
Confidence 68999999999999999999999999998767788999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCeecccccCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCcccC----CCCCCCcccccccccCC
Q psy3175 83 QGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFR----SNGTWNNCYIRRLWPVS 151 (151)
Q Consensus 83 ~~~~f~gf~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~~~k~~----~~~~~~~~~~~~~~pv~ 151 (151)
++.+|.||.|++|+|+|||||+.+++.|++++|+|+|||||||| |++. ...+.+ +.+|||+||+
T Consensus 243 ~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~s~k~R~PsWcDRIL----~~~~l~~~~Y~~~~-~~~SDH~PV~ 310 (347)
T 1i9z_A 243 TGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRIL----YRGELVPHSYQSVP-LYYSDHRPIY 310 (347)
T ss_dssp TTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCCCCBCCEEEE----EESSCEEEEEEECC-CCSSSBCCEE
T ss_pred cCCcccccccCCCCCCCCcccCCCCccccccccccCCcccceEE----EeCCEEEEEEEecC-ccCCCcCCce
Confidence 99999999999999999999999999999999999999999999 7651 113344 8899999994
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=8.1e-44 Score=290.27 Aligned_cols=136 Identities=26% Similarity=0.510 Sum_probs=123.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccCCCHHHHHHHHhccchHHHhhhhhhHHhhh
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQD 82 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~ 82 (151)
+|+||+||+.+.++|++++..|++.+.. +..++++||+||||||++.+.+++.++|++++|..||++|||..+++
T Consensus 132 vn~HL~~~~~~~~~R~~~~~~I~~~~~~-----~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~ 206 (282)
T 2imq_X 132 TTSRMSDEDVTSTNTKYAYDTRLDYSKK-----DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE 206 (282)
T ss_dssp EEEECCTTCCCTTSSSSSCCGGGCTTSS-----SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHHHHHhhhc-----cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc
Confidence 6899999998889999999999988753 45678999999999999999999999999999999999999999999
Q ss_pred cCcccCCCeecccccCCCCCCCCCCCCCCCCCCccCCCCCCcccCCCCcccCCCC--------CCCcccccccccCC
Q psy3175 83 QGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNG--------TWNNCYIRRLWPVS 151 (151)
Q Consensus 83 ~~~~f~gf~E~~I~F~PTYK~~~~~~~y~~~~k~R~PswcDRIL~~~~~k~~~~~--------~~~~~~~~~~~pv~ 151 (151)
+.+|.||.|++|+|+|||||+.++++|++ +|+|||||||| |++.+.. +.+++++|||+||+
T Consensus 207 -~~~f~~f~e~~i~f~PTYk~~~~~~~y~~---~R~Psw~DrIl----~~~~~~~~~~~~~y~~~~~~~~SDH~PV~ 275 (282)
T 2imq_X 207 -QKLFDGWTEPQVTFKPTYKFKPNTDEYDL---SATPSWTDRAL----YKSGTGKTIQPLSYNSLTNYKQTEHRPVL 275 (282)
T ss_dssp -TTSSTTCBCCCCCSCCCBCBCTTSSCBCT---TSCCBCCEEEE----EECSSSCCEEEEEEEECTTCCSSSSCCEE
T ss_pred -cccccccccCCcCCCCCccccCCCccccc---cCCccccceEE----EecCCCCceEeeEecCCCCCCCCCcCCeE
Confidence 99999999999999999999999999986 79999999999 8865432 34578999999994
No 6
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.15 E-value=5.7e-07 Score=69.18 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=33.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+|+||.+.......|..++..|++.+.- ...+|++||||-...
T Consensus 140 ~~~Hl~~~~~~~~~r~~q~~~l~~~~~~--------~~~~il~GDfN~~~~ 182 (266)
T 3teb_A 140 YSCHMNLPNCETEDMGKNIQTILNRTQN--------SNLKILMGDFNTDAI 182 (266)
T ss_dssp EEEECCCTTCTTCCHHHHHHHHHTSSCS--------CCEEEEEEECCCCTT
T ss_pred EEecCCCccCChHHHHHHHHHHHHHHhc--------CCcEEEEeECCCCCC
Confidence 5789999865556788999999887642 467999999998753
No 7
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=97.93 E-value=3.7e-06 Score=62.34 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=34.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYR 51 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyR 51 (151)
+++||.++......|.+++..|++.+.- ......+|++||||-.
T Consensus 113 ~~~hl~~~~~~~~~r~~q~~~~~~~l~~-----~~~~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 113 MTSHLESCKNQSQERTKQLRVVLQKIKE-----APEDAIVIFAGDTNLR 156 (250)
T ss_dssp EECBCCCSGGGHHHHHHHHHHHHHHHHH-----SCTTEEEEEEEECCCC
T ss_pred eccccccccccHHHHHHHHHHHHHHHHh-----cCCCCCEEEEEecCCC
Confidence 5789999888888899999999888742 1223469999999953
No 8
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=97.93 E-value=4.8e-06 Score=62.84 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=34.6
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYR 51 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyR 51 (151)
+|+||.++......|.+++..|++.+.- ......+|++||||..
T Consensus 119 ~~~Hl~~~~~~~~~~~~q~~~~~~~l~~-----~~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 119 MTSHLESTREHSAERIRQLKTVLGKMQE-----APDSTTVIFAGDTNLR 162 (256)
T ss_dssp EECBCCCSGGGHHHHHHHHHHHHHHHHH-----SCTTSEEEEEEECCCC
T ss_pred EeecccccccchhhhhHHHHHHhhhhhh-----ccCcceEEEeCccCCC
Confidence 5899999988888899999999887742 1223569999999964
No 9
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=97.57 E-value=1.2e-05 Score=60.80 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=32.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+||.++......|..++..++..+..- ........+|++||||.+-
T Consensus 123 ~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~--~~~~~~~~vIl~GDfN~~~ 170 (256)
T 4fva_A 123 LNTHLESTREHRPQRCAQFGFCMDKVREI--IAQNPGALVFFGGDLNLRD 170 (256)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHHHH--HHHSTTCEEEEEEECCCCG
T ss_pred EEecCCCCCcchHHHHHHHHHHHHHhhhh--hhccCCCcEEEeccCCCCc
Confidence 57899998887777877777776553210 0012335799999999754
No 10
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=97.53 E-value=2.9e-05 Score=60.06 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=28.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYR 51 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyR 51 (151)
+|+||.+.. ...|.++...|++.+.- +.....+|++||||-.
T Consensus 135 ~~~Hl~~~~--~~~R~~q~~~l~~~l~~-----~~~~~pvIl~GDfN~~ 176 (267)
T 3g6s_A 135 VNTHFDHVG--EEARRQSALLIIRKIKE-----IVGERPAVVTGDFNVT 176 (267)
T ss_dssp EEEECCSSC--HHHHHHHHHHHHHHHHH-----HTTTSCEEEEEECSSC
T ss_pred EEeCCCCCC--HHHHHHHHHHHHHHHHH-----hcCCCCEEEEeECCCC
Confidence 578997653 56787777777766531 1113469999999963
No 11
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=97.47 E-value=0.00014 Score=58.69 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=33.4
Q ss_pred cccCCCCCCC------CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGR------KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~------~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+|+||.+... ....|.+++..|.+.+.-. .+.....+|++||||-.-.
T Consensus 167 ~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---~~~~~~pvIl~GDfN~~~~ 220 (317)
T 3i41_A 167 IGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK---NIPKDETVYIGGDLNVNKG 220 (317)
T ss_dssp EEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH---TCCTTSCEEEEEECCCCTT
T ss_pred EEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh---ccCCCCeEEEEeECCCCCC
Confidence 5789998653 3678999998888776421 0122356999999997764
No 12
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=97.18 E-value=0.00022 Score=56.59 Aligned_cols=45 Identities=16% Similarity=0.001 Sum_probs=29.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+||.+. ....|.++...|.+.+.--.. .....+|++||||-.-
T Consensus 139 ~~~Hl~~~--~~~~R~~q~~~l~~~i~~~~~---~~~~pvIl~GDfN~~~ 183 (298)
T 3mpr_A 139 FNLHMDHI--GKKARVESAFLVQEKMKELGR---GKNLPAILTGDFNVDQ 183 (298)
T ss_dssp EEEECCSS--CHHHHHHHHHHHHHHHHHTTT---TSCCCEEEEEECSSCT
T ss_pred EEecCCCC--CHHHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCC
Confidence 57899853 356788888888776632100 0234699999999543
No 13
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=97.17 E-value=0.00019 Score=59.53 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=33.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+||.++.....+|..++..++..+..- ........+|++||||-+-
T Consensus 229 ~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~--~~~~~~~pvIl~GDFN~~p 276 (362)
T 4gew_A 229 LNTHLESTREHRPQRCAQFGFCMDKVREI--IAQNPGALVFFGGDLNLRD 276 (362)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHHHH--HHHCTTCEEEEEEECCCCG
T ss_pred EEecCCccccchhHHHHHHHHHHHHhHhh--hhcCCCCCeEEeecCCCCC
Confidence 57899998888888988888877654210 0012235699999999653
No 14
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=97.08 E-value=0.00027 Score=55.37 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=32.9
Q ss_pred cccCCCCCCC------CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGR------KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~------~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+|+||.++.. ....|.+++..|.+.+.-. .......+|++||||-.-.
T Consensus 148 ~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---~~~~~~pvIl~GDfN~~~~ 201 (301)
T 1zwx_A 148 IGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK---NIPKDEIIFIGGDLNVNYG 201 (301)
T ss_dssp EEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH---TCCTTSEEEEEEECCCCTT
T ss_pred EEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh---CCCCCCeEEEEeeCCCCCC
Confidence 5889998743 3467888888887765310 0122357999999997764
No 15
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=96.82 E-value=0.00032 Score=53.69 Aligned_cols=42 Identities=17% Similarity=0.132 Sum_probs=29.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYR 51 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyR 51 (151)
+|+||.+.. ...|..++..|++.+.- .+.. +.+|++||||-.
T Consensus 129 ~~~Hl~~~~--~~~r~~q~~~l~~~i~~----~~~~-~pvil~GDfN~~ 170 (257)
T 3l1w_A 129 INVHLDHIS--AHARLAGMTVILEELHD----KIAQ-YPTLLMGDFNAE 170 (257)
T ss_dssp EEEECCSSC--HHHHHHHHHHHHHHTHH----HHHH-SCEEEEEECCCC
T ss_pred EEeCCCCCC--HHHHHHHHHHHHHHHHH----HcCC-CCEEEEeeCCCC
Confidence 578998763 46788899988887641 0111 269999999964
No 16
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=96.58 E-value=0.0011 Score=50.76 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=27.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+|++.+.. ...+.+.+..+++.+ ....++++||||--.
T Consensus 120 ~~vy~p~~~~-~~~~~~~l~~~~~~~---------~~~~~Ii~GDfN~~~ 159 (245)
T 1wdu_A 120 VSYYFEPDKP-IESYLEQIKRVERKM---------GPKRLIFGGDANAKS 159 (245)
T ss_dssp EEEECCTTSC-SHHHHHHHHHHHHTT---------CSSSEEEEEECCCCC
T ss_pred EEEEeCCCCC-HHHHHHHHHHHHHHh---------CCCcEEEEeccccCc
Confidence 5789988763 345566777777654 123599999999543
No 17
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.38 E-value=0.00049 Score=53.22 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=26.8
Q ss_pred cccCCCCCCCCH---HHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGRKV---AERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~~~---~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+|++.+.... ..|.+-+..+.+.+..- ......++++||||--.
T Consensus 108 ~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~----~~~~~~~ii~GDfN~~~ 156 (265)
T 3g91_A 108 YNIYFPNGAMSEERLKYKLEFYDAFLEDVNRE----RDSGRNVIICGDFNTAH 156 (265)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHHHHHHHH----HHTTCCEEEEEECCCCC
T ss_pred EEEEecCCCCCchhHHHHHHHHHHHHHHHHHH----HcCCCCEEEECccccCC
Confidence 578998887653 23555555554443210 01135699999999554
No 18
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=95.06 E-value=0.0065 Score=52.36 Aligned_cols=29 Identities=10% Similarity=-0.094 Sum_probs=19.4
Q ss_pred CCcccCCCCcccCCC--CCCCcccccccccC
Q psy3175 122 TDRMSVPPPFLFRSN--GTWNNCYIRRLWPV 150 (151)
Q Consensus 122 cDRIL~~~~~k~~~~--~~~~~~~~~~~~pv 150 (151)
-|+||+++.|...-. .-.++...|||-||
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV 460 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPF 460 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCE
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccE
Confidence 599998877663211 12334678999998
No 19
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=94.53 E-value=0.011 Score=44.84 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=30.4
Q ss_pred cccCCCCCCC-----CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGR-----KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+|+||+++.. ....|.+.+..|.+.+.-- ......+|++||||-..+
T Consensus 106 ~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----~~~~~~~Il~GDFN~~~~ 157 (268)
T 1ako_A 106 INGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----LKRDNPVLIMGDMNISPT 157 (268)
T ss_dssp EEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH----CCTTSCEEEEEECCCCCS
T ss_pred EEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh----hhCCCCEEEEeECCCCCc
Confidence 5789998754 2356777777776655310 122356999999997643
No 20
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=93.28 E-value=0.027 Score=43.76 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=31.6
Q ss_pred cccCCCCCC------CCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGG------RKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~------~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+||.++. .....|..++..|.+.+.-. .......++++||||-..
T Consensus 148 ~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---~~~~~~pvil~GDfN~~~ 200 (306)
T 2ddr_A 148 IGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK---NIPNNEYVLIGGDMNVNK 200 (306)
T ss_dssp EEEECCCC-------CHHHHHHHHHHHHHHHHHHH---TCCTTSCEEEEEECCCCC
T ss_pred EEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh---cCCCCCEEEEEeeCCCCc
Confidence 488999874 24567888888887665310 011234699999999876
No 21
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=93.23 E-value=0.022 Score=42.80 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=28.6
Q ss_pred cccCCCCCCC----CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGR----KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~----~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+|+||+++.. ....|.+.+..|.+.+.- .+.....++++||||-..+
T Consensus 102 ~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~----~~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 102 INVYCVNGEALDSPKFKYKEQWFAALTEFVRD----EMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp EEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH----HHTTCSSEEEEEECCCCCS
T ss_pred EEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH----HhcCCCCEEEEeECCCCCc
Confidence 5789988754 344565656655544321 0012346999999997654
No 22
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=91.44 E-value=0.068 Score=40.30 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=25.6
Q ss_pred cccCCCCCCC----CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGR----KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~----~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+|++++.. ....|.+.+..|.+.+.- .......++++||||-..
T Consensus 102 ~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~----~~~~~~p~Il~GDFN~~~ 151 (257)
T 2voa_A 102 INTYVPQGFKIDSEKYQYKLQWLERLYHYLQK----TVDFRSFAVWCGDMNVAP 151 (257)
T ss_dssp EEEECCCCSCTTSHHHHHHHHHHHHHHHHHHH----HCCTTSCEEEEEECSCCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHH----HhcCCCCEEEEeeCCCCC
Confidence 5789988653 233444444444443310 001234699999999543
No 23
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=91.36 E-value=0.034 Score=42.95 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=28.0
Q ss_pred cccCCCCCCC---CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGR---KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~---~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+|+++... ..+.|.+.+..|.+.+.- +.....++++||||-..
T Consensus 135 ~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~-----~~~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 135 VTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----LASRKPLVLCGDLNVAH 182 (285)
T ss_dssp EEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----HHTTSCEEEEEECSCCC
T ss_pred EEEEcCCCCCcchhHHHHHHHHHHHHHHHHh-----hccCCCEEEEEECCCCC
Confidence 5789987643 345577666666555421 01125699999999754
No 24
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=90.29 E-value=0.17 Score=42.73 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=40.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCC---CCCCC------CCCCCeEEEeCccccccCCCHHHHHHHHhccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQF---PMGRT------LNSHDYVFWCGDFNYRIDMDKDELKELLKHDL 67 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f---~~~~~------~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~ 67 (151)
+|.||..+......|..+...|++.+.- ..... -...-.+|++||||-- +.+.+.+++.+|.
T Consensus 200 ~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~---P~s~vy~~L~~G~ 270 (398)
T 3ngq_A 200 ANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSL---PDSGVVEYLSNGG 270 (398)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCC---TTSHHHHHHHHTE
T ss_pred EEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCC---CCCHHHHHHhcCC
Confidence 4789999888888899999988877631 10000 0112369999999954 4456777776653
No 25
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=90.10 E-value=0.16 Score=38.05 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=27.4
Q ss_pred cccCCCCCCCCHH---HHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGRKVA---ERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~~~~---~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+|+||+++..... .|.+.+..|.+.+.-- ......++++||||-..+
T Consensus 106 ~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~~----~~~~~~~Il~GDFN~~~~ 155 (259)
T 2jc5_A 106 ISLYLPSGSSAEERQQVKYRFLDAFYPMLEAM----KNEGRDIVVCGDWNIAHQ 155 (259)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHHHHHHHH----HHTCSEEEEEEECCCCCS
T ss_pred EEEeccCCCCCcHHHHHHHHHHHHHHHHHHHH----HhcCCCEEEEeeCCCCCc
Confidence 5789999875432 2334455554443210 011356999999998753
No 26
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=88.45 E-value=0.091 Score=41.73 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=28.2
Q ss_pred cccCCCCCCC---CHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGR---KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~---~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+||+++.. ....|.+.+..|...+.- +.....+|++||||-..
T Consensus 168 ~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 168 VTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----LASRKPLVLCGDLNVAH 215 (318)
T ss_dssp EEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----HHHHSCEEEEEECSCCC
T ss_pred EEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----cccCCCEEEEeeCCCCC
Confidence 5789987654 345576666666655421 10114599999999654
No 27
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=87.39 E-value=0.12 Score=39.77 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=24.9
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccccccC
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRID 53 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi~ 53 (151)
+++||.+... .++.+.+.+++..+.-. .....+|++||||-...
T Consensus 131 i~~Hl~~~~~--~~q~~~l~~~~~~~~~~-----~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 131 VALHSAPSDA--VAEINSLYDVYLDVQQK-----WHLNDVMLMGDFNADCS 174 (260)
T ss_dssp EECCCCGGGH--HHHHHHHHHHHHHHHHH-----HCCCCEEEEEECCCSTT
T ss_pred EEecCCCCCc--HHHHHHHHHHHHHHHHh-----CCCCCEEEEecCCCCCc
Confidence 5789997542 22344445554443110 11245999999997654
No 28
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=82.22 E-value=0.52 Score=34.58 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=24.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+|++.+.. . | -+.++++.+.-. ....++++||||-..
T Consensus 112 ~~~y~p~~~~--~-~--~~~~l~~~l~~~------~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 112 LNIYAPNTGA--P-R--FIKQVLSDLQRD------LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEECCSSSH--H-H--HHHHHHHHTTTT------CCTTEEEEEECSSCS
T ss_pred EEEecCCCCc--H-H--HHHHHHHHHHhc------cCCCEEEEccCCCCC
Confidence 4789887653 2 2 244566665421 124699999999854
No 29
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=77.84 E-value=1.6 Score=33.36 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=26.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+|+|++.+.. .+.+.+.+..+...+. ...++++||||--.
T Consensus 93 ~svY~P~~~~-~~~~~~~l~~l~~~~~---------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 93 VSAYFQYSDP-IDPYLHRLGNILDRLR---------GARVVICADTNAHS 132 (240)
T ss_dssp EEEECCTTSC-SHHHHHHHHHHHHHTT---------TSCEEEEEECCCCC
T ss_pred EEEEcCCCCc-hhHHHHHHHHHHHhcC---------CCcEEEEEeccccc
Confidence 5789988865 3445555566655432 13599999999543
No 30
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=77.13 E-value=0.48 Score=42.30 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCC-C------CCCCCCCeEEEeCccccccCCCHHHHHHHHhcc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPM-G------RTLNSHDYVFWCGDFNYRIDMDKDELKELLKHD 66 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~-~------~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~ 66 (151)
+|+||.++......|......|++.+.--. . ........||++||||---+ +.+.+.+..+
T Consensus 552 ~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~---s~~~~~l~~~ 619 (727)
T 4b8c_D 552 VTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYIN---SAVYELINTG 619 (727)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCC---CcceEeeecC
Confidence 578998865545557777666666653110 0 00012236999999995543 3444444433
No 31
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=71.95 E-value=0.44 Score=36.52 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=19.4
Q ss_pred CCCcccCCCCcccC--CCCCCCcccccccccC
Q psy3175 121 WTDRMSVPPPFLFR--SNGTWNNCYIRRLWPV 150 (151)
Q Consensus 121 wcDRIL~~~~~k~~--~~~~~~~~~~~~~~pv 150 (151)
--|+||+++.+... ...-.++...|||.||
T Consensus 248 rID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv 279 (285)
T 2o3h_A 248 RLDYFLLSHSLLPALCDSKIRSKALGSDHCPI 279 (285)
T ss_dssp CCEEEEECGGGGGGEEEEEECTTCCSSSBCCE
T ss_pred EEEEEEECHHHHhhhhheEeeccCCCCCeecE
Confidence 37999988766531 1112334567999998
No 32
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=72.76 E-value=0.93 Score=23.41 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=7.7
Q ss_pred CCCCCCccc
Q psy3175 118 APAWTDRMS 126 (151)
Q Consensus 118 ~PswcDRIL 126 (151)
.|+|.|||=
T Consensus 8 r~nWs~RV~ 16 (26)
T 2yka_B 8 KTSWADRVR 16 (26)
Confidence 589999985
No 33
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=64.36 E-value=0.79 Score=36.18 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=19.0
Q ss_pred CCcccCCCCcccC--CCCCCCcccccccccC
Q psy3175 122 TDRMSVPPPFLFR--SNGTWNNCYIRRLWPV 150 (151)
Q Consensus 122 cDRIL~~~~~k~~--~~~~~~~~~~~~~~pv 150 (151)
-|+||+++.+... ...-.+....|||.||
T Consensus 282 ID~il~s~~~~~~v~~~~v~~~~~~SDH~Pv 312 (318)
T 1hd7_A 282 LDYFLLSHSLLPALCDSKIRSKALGSDHCPI 312 (318)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCE
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCccCE
Confidence 6999988777632 1112234557999998
No 34
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=60.83 E-value=1.3 Score=38.29 Aligned_cols=17 Identities=41% Similarity=0.774 Sum_probs=14.5
Q ss_pred CCCCCeEEEeCcccccc
Q psy3175 36 LNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 36 ~~~~d~vfw~GDlNyRi 52 (151)
+..++.||+=||||||=
T Consensus 374 L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HTTCSEEEEEHHHHHHH
T ss_pred HhhCcEEEEecchhhhh
Confidence 35678999999999995
No 35
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=57.50 E-value=5.1 Score=31.89 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=24.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCccc
Q psy3175 3 TRLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFN 49 (151)
Q Consensus 3 ~~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlN 49 (151)
++.||.+.... +|.+....|...+.-.....-..+.-.+++||||
T Consensus 135 ~s~Hl~~~~~~--ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN 179 (261)
T 1sr4_B 135 FTVHALATGGS--DAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFN 179 (261)
T ss_dssp EEEECCTTTTT--THHHHHHHHHHHHHC---CGGGGGCEEEEEEECS
T ss_pred EEeCCCCCCCc--hHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCC
Confidence 46799997522 2444556666654211000001124699999999
No 36
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=45.55 E-value=4.2 Score=20.87 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=7.0
Q ss_pred ccCCCCCCcc
Q psy3175 116 ARAPAWTDRM 125 (151)
Q Consensus 116 ~R~PswcDRI 125 (151)
+-.|+||||.
T Consensus 17 ~~rp~yc~~~ 26 (26)
T 1p1p_A 17 KDRPSYCGQX 26 (26)
T ss_dssp TTCCGGGCC-
T ss_pred CCCCCccCcC
Confidence 3569999984
No 37
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=38.09 E-value=10 Score=30.29 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=27.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeCcccccc
Q psy3175 4 RLQKAIGGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRI 52 (151)
Q Consensus 4 ~~HL~Ag~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~d~vfw~GDlNyRi 52 (151)
+.|+.|..+ ..|.+....|...+.-. ...+...--.+++||||=.-
T Consensus 145 ~tHa~a~~g--~da~a~v~~I~~~~~~~-~~~~~~~~pwii~GDFNr~P 190 (262)
T 2f1n_A 145 TAHAIAMRN--NDAPALVEEVYNFFRDS-RDPVHQALNWMILGDFNREP 190 (262)
T ss_dssp EEECCSSSS--CSHHHHHHHHHHHHHTC-SSHHHHTCEEEEEEECSSCH
T ss_pred EEEecCCCC--ccHHHHHHHHHHHHhcC-cccccCCCcEEEEecCCCCC
Confidence 679998633 22677778888775321 00000012589999999654
No 38
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=28.02 E-value=19 Score=21.25 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=14.8
Q ss_pred CCCCCCC-CCCC--CCCCCCCccCCCCC
Q psy3175 98 PPTYKYD-LFSD--DYDTSEKARAPAWT 122 (151)
Q Consensus 98 ~PTYK~~-~~~~--~y~~~~k~R~Pswc 122 (151)
+|-|+|. .... .|. ..-|.|.|-
T Consensus 4 ~~KYry~dp~G~~~TWt--GrGr~P~wi 29 (47)
T 1hnr_A 4 PAKYSYVDENGETKTWT--GQGRTPAVI 29 (47)
T ss_dssp SCCBEECCSSCCCEECC--TTSSCCSHH
T ss_pred CCceeecCCCCCccccc--CCCCCCHHH
Confidence 5788873 4422 343 468999995
No 39
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=26.73 E-value=6.6 Score=20.84 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=8.0
Q ss_pred CccCCCCCCcc
Q psy3175 115 KARAPAWTDRM 125 (151)
Q Consensus 115 k~R~PswcDRI 125 (151)
|--.|+||||-
T Consensus 17 kv~rp~yc~rp 27 (31)
T 1pqr_A 17 KVGRPPYCDRP 27 (31)
T ss_dssp SSSCCHHHHSC
T ss_pred cCCCCCcCCCC
Confidence 44568999984
Done!