RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3175
(151 letters)
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB:
1i9y_A*
Length = 347
Score = 169 bits (429), Expect = 1e-52
Identities = 53/115 (46%), Positives = 72/115 (62%)
Query: 10 GGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLD 69
G ER+ DY I ++F GR++ +HDYV W GDFNYRI + +E+ + L
Sbjct: 170 GYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLS 229
Query: 70 DVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
+ ++DQL Q G VF F+E I+FPPTYK+D+ +D YDTS+K R PAWTDR
Sbjct: 230 YLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDR 284
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling,
structural genomics consortium stockholm, magnesium
binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB:
3nr8_B*
Length = 316
Score = 161 bits (409), Expect = 6e-50
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 10 GGRKVAERNADYAEITRKVQFPMGRTLN-----SHDYVFWCGDFNYRIDMDKDELKELLK 64
G K A RN +Y +I R + + ++FW GD NYR+DMD E+ +
Sbjct: 149 GNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYIS 208
Query: 65 HDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDY-------DTSEKAR 117
+ +L+ DQL +++++ VF F+E ISFPPTY+Y+ S D T +
Sbjct: 209 RKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTN 268
Query: 118 APAWTDRMSVPPPFLFRSNG 137
P+W DR L++S
Sbjct: 269 VPSWCDR------ILWKSYP 282
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas;
INPP5BA,phosphoinositide 5-phosphatase, inositol
signalling, phosphatase, magnesium; HET: PIF; 2.40A
{Homo sapiens} PDB: 3n9v_A
Length = 313
Score = 157 bits (398), Expect = 2e-48
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 8 AIGGRKVAERNADYAEITRKVQFP------MGRTLNSHDYVFWCGDFNYRID-MDKDELK 60
A + RN DY +I ++QF T+++HD + W GD NYRI+ +D +++K
Sbjct: 145 AAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVK 204
Query: 61 ELLKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPA 120
+L++ + +DQL+IQ VF+GFTEG ++F PTYKYD SDD+DTSEK RAPA
Sbjct: 205 KLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPA 264
Query: 121 WTDRMSVPPPFLFRSNGTWNNCYIRR 146
W DR+ L++ Y
Sbjct: 265 WCDRI------LWKGKNITQLSYQSH 284
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling,
SGC stockholm, structural genomics CONS hydrolase; 1.90A
{Homo sapiens}
Length = 357
Score = 154 bits (390), Expect = 9e-47
Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 21/153 (13%)
Query: 8 AIGGRKVAERNADYAEITRKVQFP------------MGRTLNSHDYVFWCGDFNYRIDMD 55
G KVAER DY + + P D VFW GDFN+R+
Sbjct: 153 TSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGG 212
Query: 56 KDELKELLKHDLLDDV---LKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDT 112
+ + LL L+ DV L+ DQL + +G +FKGF E I F P+YK+D+ D YD+
Sbjct: 213 RTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDS 272
Query: 113 SEKARAPAWTDRMSVPPPFLFRSNGTWNNCYIR 145
+ K R P++TDR+ L+RS + C +
Sbjct: 273 TSKQRTPSYTDRV------LYRSRHKGDICPVS 299
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport
protein; HET: HEM; 1.30A {Cimex lectularius} SCOP:
d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Length = 282
Score = 141 bits (358), Expect = 1e-42
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 13 KVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVL 72
V N YA T + + + D++FW GD N R++ + K L+ + +D ++
Sbjct: 140 DVTSTNTKYAYDT---RLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLM 196
Query: 73 KFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
FDQL+ + + +F G+TE ++F PTYK+ +D+YD S P+WTDR
Sbjct: 197 AFDQLKKAK-EQKLFDGWTEPQVTFKPTYKFKPNTDEYDLS---ATPSWTDR 244
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 6e-04
Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 38/134 (28%)
Query: 32 MGRTLNSHDYVFWCGDF------NYRIDMD----KDELKELLKHDLLDDVLK-------- 73
M H Y D + + D +D K +L + +D ++
Sbjct: 7 MDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 74 ---FDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLF----------SDDYDTSEKARAPA 120
F L +Q++ + + F E + YK+ L S + R
Sbjct: 65 LRLFWTLLSKQEE--MVQKFVEEVLR--INYKF-LMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 121 WTDRMSVPPPFLFR 134
+ D + R
Sbjct: 120 YNDNQVFAKYNVSR 133
Score = 29.4 bits (65), Expect = 0.46
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 26/84 (30%)
Query: 50 YRIDMDKDELKELL-----KHDL--LDDV-----LK-FD-QLRI---QQDQGLVF--KGF 90
RI + EL+ LL ++ L L +V F+ +I + + +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 91 TEGHIS-------FPPTYKYDLFS 107
T HIS P L
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLL 308
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A*
3k55_A
Length = 317
Score = 28.9 bits (64), Expect = 0.57
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 16 ERNADYAEITRKVQ------FPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLD 69
A + R Q F + + + V+ GD N ++ E K++LK+ ++
Sbjct: 177 RCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLN--VNKGTPEFKDMLKNLNVN 234
Query: 70 DV 71
DV
Sbjct: 235 DV 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.0
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 108 DDYDTSEKARAPAWTDRM 125
D Y TS+ A+ W +R
Sbjct: 1634 DLYKTSKAAQD-VW-NRA 1649
Score = 28.5 bits (63), Expect = 1.1
Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 54/121 (44%)
Query: 37 NSHDYVFWCGDFNYRIDMDKDELKELLK--HDLLDDVLKFDQLRIQQDQGLVFKGFTEGH 94
N+ DY +EL++L + H L+ D++KF + +
Sbjct: 165 NTDDYF--------------EELRDLYQTYHVLVGDLIKFSAETLSE--------LIRTT 202
Query: 95 ISFPPTYK--YDLFSDDYDTSEKARAPAW-TDRMSVPP-PFLFRSNGTWNNCYIRRLWPV 150
+ + ++ W + + P +L I P+
Sbjct: 203 LDAEKVFTQGLNILE-------------WLENPSNTPDKDYL---------LSI----PI 236
Query: 151 S 151
S
Sbjct: 237 S 237
Score = 26.9 bits (59), Expect = 3.8
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 31/91 (34%)
Query: 12 RKV-AERNADYAEIT---RKVQF-----PMGRTLNSHDYVFWCGDFNYRIDMDKDELKEL 62
RK A D + I RK++F P+ +SH + +L
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH----------L---LV--PASDL 438
Query: 63 LKHDLLDDVLKFD--QLRIQQDQGLVFKGFT 91
+ DL+ + + F+ ++I V+ F
Sbjct: 439 INKDLVKNNVSFNAKDIQIP-----VYDTFD 464
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural
genomics, PSI-2, protein structure initiative; 2.10A
{Bacillus subtilis} SCOP: a.272.1.1
Length = 72
Score = 25.9 bits (57), Expect = 2.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 36 LNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLD 69
L + ++ + GD I+ DELKEL + +++
Sbjct: 12 LKTFGHIVYFGDRELEIEFMLDELKELYMNHMIE 45
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 26.8 bits (60), Expect = 2.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
+I+ K+EL LL L +
Sbjct: 105 KIEASKNELHNLLDKPQLQGI 125
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Length = 301
Score = 27.0 bits (59), Expect = 2.9
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 20 DYAEITRKVQ------FPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLK 73
D + R Q F + + + +F GD N ++ DE ++LK +
Sbjct: 162 DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLN--VNYGTDEYHDMLKLLNVSSPAN 219
Query: 74 FD 75
F+
Sbjct: 220 FN 221
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 26.0 bits (58), Expect = 4.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R + EL ELL+ + L V
Sbjct: 98 RFEETGQELTELLEEEKLSCV 118
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 26.0 bits (58), Expect = 4.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 47 DFNYRIDMDKDELKELLK 64
D +YR DM +E +LLK
Sbjct: 145 DHHYRPDMTTEEGLDLLK 162
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 26.1 bits (58), Expect = 5.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
RI + ++EL ++L H+ L
Sbjct: 103 RISVTREELYKMLAHEDLRKA 123
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 25.7 bits (57), Expect = 5.1
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R+ EL +L+ + L D
Sbjct: 100 RMSTASKELHLMLQEEELQDA 120
>2j4x_A Mitogen; bacterial superantigen, signaling protein; 1.95A
{Streptococcus dysgalactiae}
Length = 213
Score = 25.9 bits (56), Expect = 5.2
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 48 FNYRIDMDKDE--LKEL---LKHDLLDDVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYK 102
Y+I +E+ L+ L+ D +++++ + + KG+ H T
Sbjct: 124 SKYKITFQNKFVTFQEIDVRLRKSLMSD----NRIKLYEHNSICKKGYWGIHYKDNTTKF 179
Query: 103 YDLFSDDYDTSEK 115
DLF+ T +
Sbjct: 180 TDLFTHPNYTDNE 192
>3l22_A SUSD superfamily protein; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 2.05A {Bacteroides fragilis}
Length = 441
Score = 26.3 bits (58), Expect = 5.4
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 16/106 (15%)
Query: 56 KDELKELLKHDLLDDV----------------LKFDQLRIQQDQGLVFKGFTEGHISFPP 99
+ + + L +DV L I Q + + + +G I
Sbjct: 221 ITAGELVTGYSLPEDVTLIYKAPYFSQESIFSLPMADTNIPNTQQSLAEYYYDGKIMLID 280
Query: 100 TYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGTWNNCYIR 145
T + DY + R A+ + F R
Sbjct: 281 TKSGIMSKPDYSLATDKRIIAFKGEKDLLMKFTDAKTKLQWVPIFR 326
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 25.7 bits (57), Expect = 5.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R+ + EL+ LL + L
Sbjct: 100 RMQDCQRELQSLLVEERLAGA 120
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 25.7 bits (57), Expect = 6.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R+ K+EL L+ + + +V
Sbjct: 107 RLLESKEELDSLMTDETIANV 127
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase;
tetrahydrobiopterin biosynthesis, PTP synthase, PTPS,
lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A
3qn9_A 3qna_A*
Length = 138
Score = 25.4 bits (56), Expect = 6.3
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 24/78 (30%)
Query: 23 EITRKVQFPMGRTLNSHDYVFWCGDF---NYRID--------------MDKDELKELLK- 64
E+ ++ F L CG ++R+ D E+K + K
Sbjct: 22 ELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKP 81
Query: 65 ------HDLLDDVLKFDQ 76
H+ L+D+ +
Sbjct: 82 IYEQLDHNYLNDIPGLEN 99
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 25.6 bits (57), Expect = 6.3
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R D + EL L L DV
Sbjct: 105 RFDEARVELDALFNIAELKDV 125
>4fvs_A Putative lipoprotein; putative exported protein with YMCC-like
fold, DUF 3108, STR genomics, joint center for
structural genomics; 2.70A {Parabacteroides distasonis}
Length = 215
Score = 25.7 bits (55), Expect = 6.5
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 22 AEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMD 55
E P G +N D +C + + +D
Sbjct: 47 VEADYVYTNPSGTIVNKGDIKAYCQNGEFFLDSK 80
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 25.7 bits (57), Expect = 6.6
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
RI + ++EL ++L H+ L
Sbjct: 98 RISVTREELYKMLAHEDLRKA 118
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 25.2 bits (56), Expect = 6.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R++ ++EL +L D L D
Sbjct: 82 RVNEAREELMRMLAEDELRDA 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 25.6 bits (56), Expect = 7.2
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
RID + EL ++ + D
Sbjct: 404 RIDEARQELHRIINDREMRDA 424
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 25.3 bits (56), Expect = 7.4
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R+ + K EL LL D L
Sbjct: 104 RMGVAKHELYALLDEDELRKS 124
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 25.2 bits (56), Expect = 7.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
RI + K EL +L+ + L
Sbjct: 89 RIGISKSELVAMLEEEELRKA 109
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 25.3 bits (56), Expect = 8.1
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 47 DFNYRIDMDKDELKELLK 64
+ Y +++ ++L E +
Sbjct: 150 ESLYEPNLEPEDLFETIS 167
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 25.3 bits (56), Expect = 8.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 47 DFNYRIDMDKDELKELLK 64
D N+R +M K+E + +K
Sbjct: 148 DKNFRENMSKEETVDFIK 165
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 25.3 bits (56), Expect = 9.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R+ DEL+++L+ D L D
Sbjct: 111 RVQESADELQKMLQEDELRDA 131
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 25.2 bits (56), Expect = 9.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 47 DFNYRIDMDKDELKELLK 64
+ + +MD D L E +
Sbjct: 151 ESLWEPNMDPDHLFETIS 168
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 25.2 bits (55), Expect = 9.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 51 RIDMDKDELKELLKHDLLDDV 71
R++ ++EL +L D L D
Sbjct: 247 RVNEAREELMRMLAEDELRDA 267
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 25.2 bits (56), Expect = 9.8
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 47 DFNYRIDMDKDELKELLK 64
D Y + ++ ELL+
Sbjct: 144 DRYYTPTISRERAVELLR 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.450
Gapped
Lambda K H
0.267 0.0440 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,501,484
Number of extensions: 140915
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 68
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)