RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3175
         (151 letters)



>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 345

 Score =  124 bits (312), Expect = 6e-36
 Identities = 53/115 (46%), Positives = 72/115 (62%)

Query: 10  GGRKVAERNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLD 69
           G     ER+ DY  I   ++F  GR++ +HDYV W GDFNYRI +  +E+   +    L 
Sbjct: 170 GYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLS 229

Query: 70  DVLKFDQLRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
            + ++DQL  Q   G VF  F+E  I+FPPTYK+D+ +D YDTS+K R PAWTDR
Sbjct: 230 YLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDR 284


>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
           lectularius) [TaxId: 79782]}
          Length = 280

 Score = 68.5 bits (166), Expect = 3e-15
 Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 4/96 (4%)

Query: 29  QFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQQDQGLVFK 88
           +    +  +  D++FW GD N R++ +    K L+  + +D ++ FDQL+ +  +  +F 
Sbjct: 151 RLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLK-KAKEQKLFD 209

Query: 89  GFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
           G+TE  ++F PTYK+   +D+YD S     P+WTDR
Sbjct: 210 GWTEPQVTFKPTYKFKPNTDEYDLS---ATPSWTDR 242


>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
           {Listeria ivanovii [TaxId: 1638]}
          Length = 293

 Score = 29.9 bits (65), Expect = 0.11
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 7/108 (6%)

Query: 17  RNADYAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQ 76
           R     ++     F   + +   + +F  GD N  ++   DE  ++LK   +     F+ 
Sbjct: 159 RAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLN--VNYGTDEYHDMLKLLNVSSPANFNG 216

Query: 77  LRIQQDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDR 124
                D         +           D     +  +  AR  +W ++
Sbjct: 217 QMATWDPT--TNSMLKESYPKAAPEYLDYI---FVENGHARPHSWHNK 259


>d2nn4a1 a.272.1.1 (A:1-62) Hypothetical protein YqgQ {Bacillus
          subtilis [TaxId: 1423]}
          Length = 62

 Score = 26.9 bits (60), Expect = 0.26
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 36 LNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLD 69
          L +  ++ + GD    I+   DELKEL  + +++
Sbjct: 11 LKTFGHIVYFGDRELEIEFMLDELKELYMNHMIE 44


>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
           {Bacillus cereus [TaxId: 1396]}
          Length = 299

 Score = 28.1 bits (60), Expect = 0.45
 Identities = 13/123 (10%), Positives = 34/123 (27%), Gaps = 3/123 (2%)

Query: 21  YAEITRKVQFPMGRTLNSHDYVFWCGDFNYRIDMDKDELKELLKHDLLDDVLKFDQLRIQ 80
             ++     F   + + +++YV   GD N       +   +     +   +         
Sbjct: 163 TNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINA-ENNNDSEYASMFKTLNASVPSY-- 219

Query: 81  QDQGLVFKGFTEGHISFPPTYKYDLFSDDYDTSEKARAPAWTDRMSVPPPFLFRSNGTWN 140
                 +   T     +        + D    S+    P++ +   + P     +  +W 
Sbjct: 220 TGHTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWF 279

Query: 141 NCY 143
             Y
Sbjct: 280 QKY 282


>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4,
           RRP4 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 24.8 bits (54), Expect = 3.5
 Identities = 5/27 (18%), Positives = 20/27 (74%)

Query: 58  ELKELLKHDLLDDVLKFDQLRIQQDQG 84
           ++K++LK +++++++   + R+ + +G
Sbjct: 100 QIKDILKPEIMEEIVMETRQRLLEQEG 126


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 627,500
Number of extensions: 28801
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 22
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)