BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3177
(425 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
Phosphoinositide Phosphatase Function
Length = 505
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 13/197 (6%)
Query: 42 YLVMVTGCVSVGKIHESEIFRVTSTAFISLR-NQAQDEERISEVRKL---LNSGTFYFSW 97
Y ++ G+ + +RV + +S + N D E ++ L L + TFYFS+
Sbjct: 70 YAIIANTVEETGRFNGHVFYRVLQHSIVSTKFNSRIDSEEAEYIKLLELHLKNSTFYFSY 129
Query: 98 SSGAADSLDLTLCAQRRKYTSETDRRFFWNRMLHIHLLRFS-IDP--SPWLLKIMCGSIE 154
+ +SL D RFFWN L L F+ DP ++ ++ G +
Sbjct: 130 TYDLTNSLQRNEKVGPAASWKTADERFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAK 189
Query: 155 IRTVYVGHRQARAVIISRLSCERAGTRFNVRGVNDDGHVANFVETEQVLFLDD------E 208
+ +I+R S RAGTR+ RGV+ DG+V NF ETEQ+L ++
Sbjct: 190 TVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNETEQILLAENPESEKIH 249
Query: 209 VTSYVQTRGSVPLFWEQ 225
V S++QTRGSVP++W +
Sbjct: 250 VFSFLQTRGSVPIYWAE 266
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 266 RGVNDDGHVANFVETEQVLFLDD------EVTSYVQTRGSVPLFWEQPGIQVGSHKVRMS 319
RGV+ DG+V NF ETEQ+L ++ V S++QTRGSVP++W + I +K +
Sbjct: 220 RGVDKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAE--INNLKYKPNLV 277
Query: 320 RGVESSSAAFNRHMGFIKERYGHQVIVNLLGTSLIGSKEGEATLSNLFQSHHAKSSHSSD 379
G E+S A +H KE YG +VN L+ K E + ++S + +
Sbjct: 278 LG-ENSLDATKKHFDQQKELYGDNYLVN-----LVNQKGHELPVKEGYES-VVHALNDPK 330
Query: 380 VPHIVYDYHQECRGGNTKNISKLLAKVEK 408
+ ++ +D+H ECR + L+ +EK
Sbjct: 331 IHYVYFDFHHECRKMQWHRVKLLIDHLEK 359
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGENDP------IDVLEIGETI 128
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + NN +DVL+ ++
Sbjct: 88 YIHNYGAFPQTWEDPNVSHPETKAVGDNNP------IDVLQIGETI 127
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 128
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 128
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 128
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 90 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 129
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 128
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 128
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 90 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 129
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 128
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ +DVLE ++
Sbjct: 89 YIHNFGAFPQTWEDPNVSHPETKAVGDNDP------IDVLEIGETI 128
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSMQVRNKFNVRGVNDD 271
Y+ G+ P WE P + HP+ + N+ N + + + + ++ + + D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPINVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 272 GHV 274
G
Sbjct: 149 GET 151
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N +DVLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNEP------IDVLEIGETI 128
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 212 YVQTRGSVPLFWEQPGIQHPKRQIQSRNNTPNSWMLMDVLEFCRSM 257
Y+ G+ P WE P + HP+ + N+ ++VLE ++
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDP------IEVLEIGETI 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,009,168
Number of Sequences: 62578
Number of extensions: 476906
Number of successful extensions: 1245
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 20
length of query: 425
length of database: 14,973,337
effective HSP length: 102
effective length of query: 323
effective length of database: 8,590,381
effective search space: 2774693063
effective search space used: 2774693063
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)