RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3177
(425 letters)
>gnl|CDD|217007 pfam02383, Syja_N, SacI homology domain. This Pfam family
represents a protein domain which shows homology to the
yeast protein SacI. The SacI homology domain is most
notably found at the amino terminal of the inositol
5'-phosphatase synaptojanin.
Length = 298
Score = 235 bits (603), Expect = 5e-75
Identities = 87/214 (40%), Positives = 122/214 (57%), Gaps = 25/214 (11%)
Query: 42 YLVMVTGCVSVGKIHESEIFRVTSTAFISLRNQ----------AQDEERISEVRKLLNSG 91
YL+++T VG I I+++TS FI L + +E + ++KLL+SG
Sbjct: 15 YLIVITKASKVGTIRGHTIYKITSVEFIPLNSSEYDSESDKKEKDEEHYLKLLKKLLSSG 74
Query: 92 TFYFSWSSGAADSLDLTLCAQRRKYTSET------DRRFFWNRMLHIHLLRFSIDPSPWL 145
+FYFS+ DLT QRR +S + D RF WN L L+ F D S WL
Sbjct: 75 SFYFSYD------YDLTNSLQRRGLSSSSPLWKRADDRFVWNSYLLKPLIDFRSDLSDWL 128
Query: 146 LKIMCGSIEIRTVYVGH--RQARAVIISRLSCERAGTRFNVRGVNDDGHVANFVETEQVL 203
L ++ G +E RT+ V ++ +ISR S +RAGTR+N RG++DDG+VANFVETEQ++
Sbjct: 129 LPLIQGFVEQRTISVNGEGKKVTLTLISRRSRKRAGTRYNRRGIDDDGNVANFVETEQIV 188
Query: 204 FLDDE-VTSYVQTRGSVPLFWEQPGIQHPKRQIQ 236
D + S+VQ RGSVPLFWEQ K +I+
Sbjct: 189 SDDSGRIFSFVQIRGSVPLFWEQDPNLKYKPKIK 222
Score = 169 bits (430), Expect = 2e-49
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 6/137 (4%)
Query: 263 FNVRGVNDDGHVANFVETEQVLFLDDE-VTSYVQTRGSVPLFWEQPGIQVGSHKVRMSRG 321
+N RG++DDG+VANFVETEQ++ D + S+VQ RGSVPLFWEQ K++++R
Sbjct: 167 YNRRGIDDDGNVANFVETEQIVSDDSGRIFSFVQIRGSVPLFWEQDPNLKYKPKIKITRS 226
Query: 322 VESSSAAFNRHMGFIKERYGHQVIVNLLGTSLIGSKEGEATLSNLFQSHHAKSSHSSDVP 381
E++ AF++H + +RYG IVNLL K E LS ++ + + +
Sbjct: 227 SEATQPAFDKHFDDLIKRYGPIYIVNLLDK-----KGSEKKLSEAYEEAINYLNENKKIK 281
Query: 382 HIVYDYHQECRGGNTKN 398
+ +D+H EC+G N
Sbjct: 282 YTWFDFHAECKGMKFDN 298
Score = 44.9 bits (107), Expect = 4e-05
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1 MCGSIEIRTAYV--RHRQARAVIISRLSCERAGTRF 34
+ G +E RT V ++ +ISR S +RAGTR+
Sbjct: 132 IQGFVEQRTISVNGEGKKVTLTLISRRSRKRAGTRY 167
>gnl|CDD|227637 COG5329, COG5329, Phosphoinositide polyphosphatase (Sac family)
[Signal transduction mechanisms].
Length = 570
Score = 153 bits (388), Expect = 3e-41
Identities = 74/200 (37%), Positives = 102/200 (51%), Gaps = 16/200 (8%)
Query: 42 YLVMVTGCVSVGKIHESEIFRVTSTAFISLRNQAQDEERIS---------EVRKLLNSGT 92
YL+++TG VG I I+++ FISL N D+E E++KLL++GT
Sbjct: 74 YLIVITGASLVGVIPGHSIYKILDVDFISLNNNKWDDELEEDEANYDKLSELKKLLSNGT 133
Query: 93 FYFSWSSGAADSLDLTLCAQRRKYTSETDRRFFWNRML------HIHLL-RFSIDPSPWL 145
FYFS+ +SL L D F WN L H L +L
Sbjct: 134 FYFSYDFDITNSLQKNLSEGLEASVDRADLIFMWNSFLLEEFINHRSKLSSLEKQFDNFL 193
Query: 146 LKIMCGSIEIRTVYVGHRQARAVIISRLSCERAGTRFNVRGVNDDGHVANFVETEQVLFL 205
++ G E + VG +ISR S ERAGTR+ RG++DDG+V+NFVETEQ++
Sbjct: 194 TTVIRGFAETVDIKVGGNTISLTLISRRSSERAGTRYLSRGIDDDGNVSNFVETEQIVTD 253
Query: 206 DDEVTSYVQTRGSVPLFWEQ 225
+ S+ Q RGS+PLFWEQ
Sbjct: 254 SQYIFSFTQVRGSIPLFWEQ 273
Score = 131 bits (331), Expect = 2e-33
Identities = 58/167 (34%), Positives = 96/167 (57%), Gaps = 8/167 (4%)
Query: 259 VRNKFNVRGVNDDGHVANFVETEQVLFLDDEVTSYVQTRGSVPLFWEQPGIQVGSHKVRM 318
++ RG++DDG+V+NFVETEQ++ + S+ Q RGS+PLFWEQ + G K+++
Sbjct: 226 AGTRYLSRGIDDDGNVSNFVETEQIVTDSQYIFSFTQVRGSIPLFWEQSNLLYGP-KIKV 284
Query: 319 SRGVESSSAAFNRHMGFIKERYGHQVIVNLLGTSLIGSKEGEATLSNLFQSHHAKSSHSS 378
+R E++ +AF++H ++E+YG +VNLL T K EA L L+ H S
Sbjct: 285 TRSSEAAQSAFDKHFDKLREKYGDVYVVNLLKT-----KGYEAPLLELY-EKHLDLSKKP 338
Query: 379 DVPHIVYDYHQECRGGNTKNISKLLAKVEKYLQAFGLFYAKGANVSR 425
+ + +D+H+E ++ KLL +E+ L FG ++A N +
Sbjct: 339 KIHYTEFDFHKETSQDGFDDVKKLLYLIEQDLLEFG-YFAYDINEGK 384
Score = 30.4 bits (69), Expect = 2.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 2 CGSIEIRTAYVRHRQARAVIISRLSCERAGTRF 34
G E V +ISR S ERAGTR+
Sbjct: 198 RGFAETVDIKVGGNTISLTLISRRSSERAGTRY 230
>gnl|CDD|107303 cd06308, PBP1_sensor_kinase_like, Periplasmic binding domain of
two-component sensor kinase signaling systems.
Periplasmic binding domain of two-component sensor
kinase signaling systems, some of which are fused with a
C-terminal histidine kinase A domain (HisK) and/or a
signal receiver domain (REC). Members of this group
share homology with a family of pentose/hexose
sugar-binding proteins of the type I periplasmic binding
protein superfamily and are predicted to be involved in
sensing of environmental stimuli; their substrate
specificities, however, are not known in detail.
Length = 270
Score = 28.7 bits (65), Expect = 5.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 320 RGVESSSAAFNRHMGFIKE 338
G+E SS A RH GF +
Sbjct: 129 WGLEGSSPAIERHDGFKEA 147
>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
Length = 881
Score = 28.5 bits (64), Expect = 8.1
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 173 LSCERAGTRFNVRGVNDDG-HVANFVETEQVLFLD 206
S E+ G R ++D+G + V+ E LF+
Sbjct: 6 TSVEQVGDNILERYIDDNGKERSRKVKYEPTLFVH 40
>gnl|CDD|205156 pfam12945, YcgR_2, Flagellar protein YcgR. This domain is found N
terminal to pfam07238. Proteins which contain YcgR
domains are known to interact with the flagellar
switch-complex proteins FliG and FliM. This interaction
results in a reduction of torque generation and induces
CCW motor bias. This family contains members not
captured by pfam07317.
Length = 87
Score = 26.4 bits (59), Expect = 9.0
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 156 RTVYVGHRQARAVIIS------RLSCERAGTRFNVRGVNDDGHVANF 196
++ +G R +IIS R R GT VR V+DDG V F
Sbjct: 21 KSRLIGIDPDRYLIISLPVDDGRTLPLREGTEVIVRFVSDDGAVYAF 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.402
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,291,347
Number of extensions: 2016967
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1552
Number of HSP's successfully gapped: 11
Length of query: 425
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 325
Effective length of database: 6,502,202
Effective search space: 2113215650
Effective search space used: 2113215650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)