RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3177
(425 letters)
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol
endoplasmic reticulum, hydrolase, membrane,
transmembrane; 1.96A {Saccharomyces cerevisiae}
Length = 505
Score = 165 bits (419), Expect = 2e-46
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 13/208 (6%)
Query: 42 YLVMVTGCVSVGKIHESEIFRVTSTAFISLRNQAQDE----ERISEVRKLLNSGTFYFSW 97
Y ++ G+ + +RV + +S + ++ + E I + L + TFYFS+
Sbjct: 70 YAIIANTVEETGRFNGHVFYRVLQHSIVSTKFNSRIDSEEAEYIKLLELHLKNSTFYFSY 129
Query: 98 SSGAADSLDLTLCAQRRKYTSETDRRFFWNRMLHIHLLRFS---IDPSPWLLKIMCGSIE 154
+ +SL D RFFWN L L F+ ++ ++ G +
Sbjct: 130 TYDLTNSLQRNEKVGPAASWKTADERFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAK 189
Query: 155 IRTVYVGHRQARAVIISRLSCERAGTRFNVRGVNDDGHVANFVETEQVLFLDDE------ 208
+ +I+R S RAGTR+ RGV+ DG+V NF ETEQ+L ++
Sbjct: 190 TVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNETEQILLAENPESEKIH 249
Query: 209 VTSYVQTRGSVPLFWEQPGIQHPKRQIQ 236
V S++QTRGSVP++W + K +
Sbjct: 250 VFSFLQTRGSVPIYWAEINNLKYKPNLV 277
Score = 123 bits (308), Expect = 8e-31
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 244 SWMLMDVLEFCRSMQVR--NKFNVRGVNDDGHVANFVETEQVLFLDDE------VTSYVQ 295
+ + + R R ++ RGV+ DG+V NF ETEQ+L ++ V S++Q
Sbjct: 196 NATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNETEQILLAENPESEKIHVFSFLQ 255
Query: 296 TRGSVPLFWEQPGIQVGSHKVRMSRGVESSSAAFNRHMGFIKERYGHQVIVNLLGTSLIG 355
TRGSVP++W + + + E+S A +H KE YG +VNL+
Sbjct: 256 TRGSVPIYWAEINNLKYKPNLVLG---ENSLDATKKHFDQQKELYGDNYLVNLVNQ---- 308
Query: 356 SKEGEATLSNLFQSHHAKSSHSSDVPHIVYDYHQECRGGNTKNISKLLAKVEKYLQAFGL 415
K E + ++ + + + ++ +D+H ECR + L+ +EK +
Sbjct: 309 -KGHELPVKEGYE-SVVHALNDPKIHYVYFDFHHECRKMQWHRVKLLIDHLEKLGLSNED 366
Query: 416 FY 417
F+
Sbjct: 367 FF 368
Score = 34.1 bits (77), Expect = 0.087
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1 MCGSIEIRTAYVRHRQARAVIISRLSCERAGTRF 34
+ G + A + +I+R S RAGTR+
Sbjct: 184 IYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRY 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.002
Identities = 63/404 (15%), Positives = 120/404 (29%), Gaps = 126/404 (31%)
Query: 59 EIFRVTSTAFISLRNQAQDEERISEVRKLLNSGTF--YFSW-----SSGAADS-LDLTLC 110
E F A D+E + +L+ G F Y S G D L+L L
Sbjct: 35 EQF--NKILPEPTEGFAADDEPTTPA-ELV--GKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 111 AQRRKYTSETDRRFFWNRMLHIHLLRFSIDPSPWLLKIMCGSIEIRTVYVGHRQARAVII 170
Y D IH L + + + I+ AR +
Sbjct: 90 EFENCYLEGND----------IHALAAKLLQENDTTLVKTKEL-IKNYI----TARIMA- 133
Query: 171 SRLSCERAGTRFNVRGVNDDGHVANFVETEQVLF---LDDEVTSYV----QTRGSVPLFW 223
+R + ++ LF + Q G+ ++
Sbjct: 134 -----KRPFDK----------------KSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYF 170
Query: 224 EQPGIQHPKRQIQSRNNTPNSWMLMDVL--------EFCRSMQVRNKFNVRGVNDDGHVA 275
E+ ++ T + ++ D++ E R+ K +G+N +
Sbjct: 171 EE---------LRDLYQTYHV-LVGDLIKFSAETLSELIRTTLDAEKVFTQGLN----IL 216
Query: 276 NFVETEQ----VLFLDDEVTSYVQTRGSVPLFWEQPGIQVG--SHKVRMSRGVESSSAAF 329
++E +L S+P+ P I V +H V ++ + +
Sbjct: 217 EWLENPSNTPDKDYLL-----------SIPISC--PLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 330 NRHM-GFIKERYGH-QVIVNLLGTSLIGSKE-----GEATLSNLF----QSHHAKSSHSS 378
++ G GH Q +V + + S E ++ LF + + A ++S
Sbjct: 264 RSYLKGAT----GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA-YPNTS 318
Query: 379 DVPHIVYDY--HQE--------CRGGNTKNISKLLAKVEKYLQA 412
P I+ D + E + + + K +L A
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Score = 32.7 bits (74), Expect = 0.30
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 310 QVGSHKVRMSRGVE---SSSAA---FNRHMGFIKERYGHQV--IVNLLGTSLI---GSKE 358
Q GS + M G++ +S AA +NR K+ YG + IV +L G ++
Sbjct: 1624 Q-GSQEQGM--GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 359 GEATLSN 365
G+ N
Sbjct: 1681 GKRIREN 1687
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.20
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 25/111 (22%)
Query: 74 QAQDEERISEVR-----------KLLNSGTFYFSWSSGAADSLDLTLCAQRRKYTSETDR 122
+ ER++ R K+ + T + + S L + Y + D
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF---YKPYICDNDP 539
Query: 123 RFFWNRMLHIHLLRFSIDPSPWLLKIMCGSI-------EIRTVYV-GHRQA 165
++ R+++ +L F L+ + E ++ H+Q
Sbjct: 540 KY--ERLVN-AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 32.5 bits (73), Expect = 0.34
Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 66/256 (25%)
Query: 115 KYTSETDRRFFWNRML-HIHLLRFSIDPSPWLLKIMCGSIEIRTVYV----GHRQARAVI 169
K + + + HI + + ++ + L + E V R +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFL 94
Query: 170 ISRLSCERAGTRFNVRGVNDDGHVANFVETEQVLFLDDEVTSYVQTRGSVPLFWEQPGIQ 229
+S + E+ R ++E L+ D++V + + +V
Sbjct: 95 MSPIKTEQRQPSMMTR---------MYIEQRDRLYNDNQVFA----KYNVS-------RL 134
Query: 230 HPKRQIQS--RNNTPNSWMLMD----------VLEFCRSMQVRNKF-------NVRGVND 270
P +++ P +L+D L+ C S +V+ K N++ N
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 271 DGHVANFVETEQVLFLDDEVTSYVQTRGSVPLFWEQPGIQVGSHKVRMSRGVESSSAAFN 330
V +E Q L + H + + S A
Sbjct: 195 PETV---LEMLQKLLYQ----------------IDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 331 RHMGFIKERYGHQVIV 346
R + Y + ++V
Sbjct: 236 RL--LKSKPYENCLLV 249
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.26
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 79 ERISEVRKLLNSGTFYFSWSSGAADSLD-LTLCAQ 112
E+ ++KL S Y A DS L + A
Sbjct: 18 EK-QALKKLQASLKLY------ADDSAPALAIKAT 45
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer,
kinetochore, mitosis, spindle checkpoint protein,
nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Length = 123
Score = 27.9 bits (62), Expect = 2.6
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 261 NKFNVRGVNDDGHVANFVETEQVLFLDDEVTSYVQTRGSVPLF 303
+ + + G +ETE + + + +++ + S+P F
Sbjct: 66 DCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAF 108
Score = 27.6 bits (61), Expect = 4.4
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 182 FNVRGVNDDGHVANFVETEQVLFLDDEVTSYVQTRGSVPLF 222
+ + G +ETE + + + +++ + S+P F
Sbjct: 68 LIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAF 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.402
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,427,632
Number of extensions: 377026
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 11
Length of query: 425
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 329
Effective length of database: 4,021,377
Effective search space: 1323033033
Effective search space used: 1323033033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)