Query psy318
Match_columns 438
No_of_seqs 270 out of 1938
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:22:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2383|consensus 100.0 4.7E-99 1E-103 760.2 28.2 382 8-434 33-440 (467)
2 PF03969 AFG1_ATPase: AFG1-lik 100.0 2.7E-94 5.8E-99 735.1 31.9 349 9-416 1-355 (362)
3 COG1485 Predicted ATPase [Gene 100.0 1.6E-93 3.4E-98 714.1 31.7 349 8-415 8-357 (367)
4 PRK08939 primosomal protein Dn 99.8 1.9E-18 4E-23 173.8 16.2 139 64-259 155-305 (306)
5 PRK08181 transposase; Validate 99.8 8.8E-18 1.9E-22 166.1 14.6 144 64-263 105-250 (269)
6 PRK08116 hypothetical protein; 99.7 3.1E-17 6.8E-22 161.9 16.8 166 26-262 89-256 (268)
7 PRK12377 putative replication 99.7 4.2E-16 9E-21 152.6 15.4 139 65-262 101-242 (248)
8 COG1484 DnaC DNA replication p 99.7 3.8E-16 8.3E-21 153.2 15.1 142 64-263 104-250 (254)
9 PRK06526 transposase; Provisio 99.7 1.6E-16 3.4E-21 156.0 11.9 143 64-262 97-241 (254)
10 PRK09183 transposase/IS protei 99.7 7.3E-16 1.6E-20 151.5 12.5 145 63-262 100-247 (259)
11 PF01695 IstB_IS21: IstB-like 99.7 1.8E-16 3.9E-21 147.6 7.6 131 64-249 46-178 (178)
12 PRK06835 DNA replication prote 99.7 2.3E-15 4.9E-20 152.9 15.9 140 65-262 183-324 (329)
13 PRK06921 hypothetical protein; 99.6 7.6E-15 1.6E-19 144.9 14.2 137 64-262 116-261 (266)
14 PRK07952 DNA replication prote 99.6 1.8E-14 3.8E-19 140.8 15.8 138 66-261 100-240 (244)
15 PF00308 Bac_DnaA: Bacterial d 99.6 1.3E-14 2.8E-19 139.2 11.3 124 66-252 35-164 (219)
16 COG0593 DnaA ATPase involved i 99.5 2.1E-14 4.5E-19 148.9 11.4 135 64-260 112-249 (408)
17 PRK08084 DNA replication initi 99.5 3.3E-13 7.1E-18 130.6 13.5 114 66-252 46-165 (235)
18 PRK14087 dnaA chromosomal repl 99.5 3.9E-13 8.4E-18 141.9 14.0 108 65-226 141-254 (450)
19 PRK14086 dnaA chromosomal repl 99.5 3.9E-13 8.5E-18 145.6 12.4 108 66-226 315-425 (617)
20 COG1222 RPT1 ATP-dependent 26S 99.4 6.1E-13 1.3E-17 134.8 12.0 146 61-262 181-351 (406)
21 PRK08727 hypothetical protein; 99.4 9.4E-13 2E-17 127.2 12.7 99 66-227 42-142 (233)
22 PRK05642 DNA replication initi 99.4 6.6E-13 1.4E-17 128.5 11.5 100 65-227 45-146 (234)
23 PRK12422 chromosomal replicati 99.4 1.1E-12 2.4E-17 138.3 12.6 108 65-226 141-250 (445)
24 PRK14088 dnaA chromosomal repl 99.4 1.6E-12 3.5E-17 136.8 13.0 108 65-227 130-243 (440)
25 PRK00149 dnaA chromosomal repl 99.4 2.3E-12 4.9E-17 135.7 11.1 107 65-227 148-260 (450)
26 TIGR00362 DnaA chromosomal rep 99.4 3.2E-12 6.9E-17 132.6 11.6 110 65-227 136-248 (405)
27 PRK06893 DNA replication initi 99.3 5.3E-12 1.2E-16 121.6 10.0 98 67-227 41-141 (229)
28 PRK06620 hypothetical protein; 99.3 1.9E-11 4.1E-16 117.1 10.3 44 179-225 84-127 (214)
29 KOG0734|consensus 99.3 3.2E-11 6.8E-16 127.2 12.1 168 32-262 311-500 (752)
30 KOG0733|consensus 99.2 3.2E-11 6.9E-16 128.8 11.3 142 61-262 219-390 (802)
31 KOG0727|consensus 99.2 1.6E-11 3.5E-16 119.9 7.9 129 61-245 185-332 (408)
32 KOG0733|consensus 99.2 3.5E-11 7.6E-16 128.5 10.7 147 61-263 541-711 (802)
33 PRK09087 hypothetical protein; 99.2 1E-10 2.2E-15 113.0 10.1 45 182-227 89-133 (226)
34 PLN00020 ribulose bisphosphate 99.1 4.1E-10 8.9E-15 115.7 10.1 146 61-261 144-325 (413)
35 KOG0730|consensus 99.1 3.6E-10 7.8E-15 121.8 8.8 145 61-262 464-631 (693)
36 KOG0651|consensus 98.9 2.1E-09 4.7E-14 107.6 8.6 142 61-259 162-329 (388)
37 TIGR03420 DnaA_homol_Hda DnaA 98.9 5.5E-09 1.2E-13 98.8 10.8 47 179-225 89-137 (226)
38 PTZ00454 26S protease regulato 98.9 7.8E-09 1.7E-13 107.9 12.8 82 179-260 237-343 (398)
39 KOG0736|consensus 98.9 1.6E-09 3.6E-14 118.3 7.7 147 57-261 697-872 (953)
40 KOG0728|consensus 98.9 1.4E-08 3.1E-13 99.4 12.6 145 61-261 177-346 (404)
41 PRK08903 DnaA regulatory inact 98.9 9.3E-09 2E-13 98.1 10.3 95 64-225 41-136 (227)
42 COG1223 Predicted ATPase (AAA+ 98.9 1E-08 2.2E-13 101.0 10.1 179 10-261 106-312 (368)
43 TIGR01242 26Sp45 26S proteasom 98.9 2.2E-08 4.7E-13 102.8 12.7 29 62-90 153-181 (364)
44 PRK03992 proteasome-activating 98.9 2.3E-08 5E-13 103.9 12.7 83 179-261 223-330 (389)
45 KOG0652|consensus 98.8 2.7E-08 5.8E-13 98.0 12.0 146 61-262 201-371 (424)
46 TIGR01241 FtsH_fam ATP-depende 98.8 3E-08 6.5E-13 105.9 13.5 55 29-90 59-113 (495)
47 CHL00176 ftsH cell division pr 98.8 4.1E-08 8.9E-13 108.0 14.6 167 29-259 187-379 (638)
48 TIGR03689 pup_AAA proteasome A 98.8 1.9E-08 4.2E-13 107.8 11.1 29 62-90 213-241 (512)
49 CHL00206 ycf2 Ycf2; Provisiona 98.8 1.5E-08 3.2E-13 119.7 10.4 65 171-237 1725-1802(2281)
50 PF00004 AAA: ATPase family as 98.8 2.8E-08 6.1E-13 85.1 9.6 23 68-90 1-23 (132)
51 COG0465 HflB ATP-dependent Zn 98.8 3.9E-08 8.6E-13 106.5 12.5 169 29-260 154-347 (596)
52 KOG0729|consensus 98.8 2.2E-08 4.9E-13 98.8 8.9 136 61-252 207-367 (435)
53 KOG0735|consensus 98.8 2.3E-08 5E-13 108.8 9.4 145 61-261 697-863 (952)
54 cd00009 AAA The AAA+ (ATPases 98.7 7.5E-08 1.6E-12 82.0 10.2 46 178-223 82-132 (151)
55 KOG0731|consensus 98.7 6.6E-08 1.4E-12 106.9 11.6 170 29-261 315-511 (774)
56 TIGR01243 CDC48 AAA family ATP 98.7 8.3E-08 1.8E-12 107.1 12.6 83 179-261 545-650 (733)
57 CHL00195 ycf46 Ycf46; Provisio 98.7 9E-08 2E-12 102.3 12.0 30 62-91 256-285 (489)
58 KOG0726|consensus 98.7 3.9E-08 8.4E-13 98.2 8.2 124 61-240 215-357 (440)
59 PTZ00361 26 proteosome regulat 98.7 7.2E-08 1.6E-12 101.8 10.2 81 179-260 275-381 (438)
60 COG0464 SpoVK ATPases of the A 98.7 1.2E-07 2.5E-12 101.0 11.4 146 61-262 272-441 (494)
61 PRK10733 hflB ATP-dependent me 98.5 7.3E-07 1.6E-11 98.4 11.9 81 179-259 243-348 (644)
62 PLN03025 replication factor C 98.5 1.1E-06 2.3E-11 88.8 11.6 58 180-252 99-156 (319)
63 TIGR00635 ruvB Holliday juncti 98.5 1.1E-06 2.5E-11 87.2 11.6 48 29-90 8-55 (305)
64 KOG0739|consensus 98.4 1.4E-06 3E-11 87.5 9.1 34 57-90 158-191 (439)
65 PHA02544 44 clamp loader, smal 98.4 5E-06 1.1E-10 83.0 13.2 59 179-252 99-158 (316)
66 TIGR01243 CDC48 AAA family ATP 98.4 1.7E-06 3.6E-11 96.8 10.8 29 62-90 209-237 (733)
67 PRK12402 replication factor C 98.4 2.9E-06 6.2E-11 84.9 11.1 25 66-90 37-61 (337)
68 PF05496 RuvB_N: Holliday junc 98.3 1.5E-06 3.2E-11 84.4 7.1 61 17-91 16-76 (233)
69 KOG0732|consensus 98.3 1.3E-06 2.8E-11 99.3 7.5 128 61-239 295-438 (1080)
70 PRK00080 ruvB Holliday junctio 98.3 5.9E-06 1.3E-10 83.7 11.4 48 29-90 29-76 (328)
71 KOG0738|consensus 98.2 3.2E-06 6.9E-11 87.3 8.7 35 57-91 237-271 (491)
72 TIGR03345 VI_ClpV1 type VI sec 98.2 9.2E-06 2E-10 92.4 13.0 50 179-228 667-726 (852)
73 PRK04195 replication factor C 98.2 1E-05 2.2E-10 86.4 12.1 26 65-90 39-64 (482)
74 TIGR02640 gas_vesic_GvpN gas v 98.2 2.5E-05 5.4E-10 77.0 13.1 36 65-101 21-56 (262)
75 KOG0730|consensus 98.2 2.6E-06 5.6E-11 92.5 6.5 142 61-259 214-377 (693)
76 TIGR02928 orc1/cdc6 family rep 98.2 5.8E-06 1.3E-10 84.0 8.3 27 64-90 39-65 (365)
77 PF00910 RNA_helicase: RNA hel 98.1 9.2E-06 2E-10 69.3 8.2 22 68-89 1-22 (107)
78 PRK00411 cdc6 cell division co 98.1 8.3E-06 1.8E-10 83.8 8.9 27 64-90 54-80 (394)
79 smart00382 AAA ATPases associa 98.1 2.5E-05 5.4E-10 65.4 9.8 28 65-92 2-29 (148)
80 PRK00440 rfc replication facto 98.1 2.8E-05 6.1E-10 77.1 11.4 58 180-252 102-159 (319)
81 PTZ00112 origin recognition co 98.1 3.4E-05 7.4E-10 87.0 12.7 69 180-248 869-951 (1164)
82 KOG0737|consensus 98.1 1.4E-05 3E-10 82.1 8.9 27 63-89 125-151 (386)
83 PRK13341 recombination factor 98.1 3.1E-05 6.8E-10 86.6 12.4 24 66-89 53-76 (725)
84 PHA02244 ATPase-like protein 98.1 1.5E-05 3.2E-10 82.6 9.1 71 178-252 178-259 (383)
85 PRK13342 recombination factor 98.1 2.9E-05 6.3E-10 81.3 11.4 25 65-89 36-60 (413)
86 PF13401 AAA_22: AAA domain; P 98.0 9.8E-06 2.1E-10 69.8 6.2 26 65-90 4-29 (131)
87 PRK14962 DNA polymerase III su 98.0 1.8E-05 3.8E-10 84.6 9.4 27 64-90 35-61 (472)
88 TIGR02639 ClpA ATP-dependent C 98.0 2.2E-05 4.8E-10 87.9 10.4 118 63-227 481-610 (731)
89 COG2256 MGS1 ATPase related to 98.0 1.5E-05 3.2E-10 82.8 8.2 26 65-90 48-73 (436)
90 PRK11034 clpA ATP-dependent Cl 98.0 1.8E-05 3.8E-10 89.0 8.6 39 64-103 486-525 (758)
91 PHA00729 NTP-binding motif con 98.0 4.4E-05 9.4E-10 74.3 9.9 24 66-89 18-41 (226)
92 cd00561 CobA_CobO_BtuR ATP:cor 98.0 3.6E-05 7.9E-10 71.0 8.9 133 68-227 5-144 (159)
93 PRK14961 DNA polymerase III su 97.9 8E-05 1.7E-09 76.8 11.4 44 29-90 20-63 (363)
94 TIGR02880 cbbX_cfxQ probable R 97.9 6E-05 1.3E-09 75.3 9.6 26 65-90 58-83 (284)
95 TIGR00763 lon ATP-dependent pr 97.9 3.4E-05 7.4E-10 87.0 8.4 33 66-99 348-380 (775)
96 PRK07940 DNA polymerase III su 97.9 0.00011 2.4E-09 76.8 11.5 53 29-90 9-61 (394)
97 PF07728 AAA_5: AAA domain (dy 97.8 3.4E-06 7.5E-11 74.1 0.0 38 67-105 1-38 (139)
98 cd01120 RecA-like_NTPases RecA 97.8 8E-05 1.7E-09 65.2 8.6 38 68-106 2-39 (165)
99 PRK14956 DNA polymerase III su 97.8 0.00011 2.5E-09 78.4 11.0 45 28-90 21-65 (484)
100 PF13604 AAA_30: AAA domain; P 97.8 0.00018 3.9E-09 67.9 11.0 158 25-260 1-162 (196)
101 PF00158 Sigma54_activat: Sigm 97.8 0.00012 2.6E-09 67.9 9.3 124 64-233 21-156 (168)
102 PHA02774 E1; Provisional 97.8 0.00022 4.7E-09 77.6 12.2 95 179-293 478-587 (613)
103 PRK10865 protein disaggregatio 97.8 0.00026 5.7E-09 80.8 13.5 48 180-227 670-727 (857)
104 PRK10865 protein disaggregatio 97.8 0.0001 2.2E-09 84.2 9.9 44 180-223 271-319 (857)
105 TIGR03015 pepcterm_ATPase puta 97.7 0.00043 9.2E-09 67.2 12.6 23 68-90 46-68 (269)
106 PF14532 Sigma54_activ_2: Sigm 97.7 0.00022 4.8E-09 63.2 9.6 50 180-229 69-118 (138)
107 TIGR02881 spore_V_K stage V sp 97.7 0.00015 3.2E-09 71.2 9.3 26 64-89 41-66 (261)
108 TIGR02639 ClpA ATP-dependent C 97.7 0.00022 4.7E-09 80.1 11.6 48 342-392 552-609 (731)
109 PRK14970 DNA polymerase III su 97.7 0.00017 3.6E-09 74.0 9.9 28 63-90 37-64 (367)
110 PF13173 AAA_14: AAA domain 97.7 0.00022 4.8E-09 62.3 9.0 25 66-90 3-27 (128)
111 cd00267 ABC_ATPase ABC (ATP-bi 97.7 0.00027 5.9E-09 63.6 9.7 114 64-221 24-140 (157)
112 PRK07003 DNA polymerase III su 97.7 0.0002 4.4E-09 80.0 10.6 44 29-90 20-63 (830)
113 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00016 3.5E-09 82.5 10.1 47 342-391 666-722 (852)
114 PRK11034 clpA ATP-dependent Cl 97.7 0.00038 8.2E-09 78.5 12.7 48 342-392 556-613 (758)
115 KOG0743|consensus 97.7 5.5E-05 1.2E-09 79.5 5.6 29 62-90 232-260 (457)
116 cd03216 ABC_Carb_Monos_I This 97.7 0.00046 9.9E-09 63.0 11.0 50 172-221 92-142 (163)
117 PRK12323 DNA polymerase III su 97.7 0.00034 7.4E-09 77.3 11.8 44 29-90 20-63 (700)
118 PRK14949 DNA polymerase III su 97.6 0.00025 5.4E-09 80.6 10.8 45 29-91 20-64 (944)
119 COG2884 FtsE Predicted ATPase 97.6 0.00061 1.3E-08 65.0 11.7 48 172-219 147-195 (223)
120 KOG0744|consensus 97.6 4.4E-05 9.6E-10 77.6 4.2 49 65-114 177-227 (423)
121 PRK08691 DNA polymerase III su 97.6 0.00041 8.8E-09 77.1 11.9 44 29-90 20-63 (709)
122 PRK13531 regulatory ATPase Rav 97.6 0.00012 2.6E-09 78.3 7.4 28 63-90 37-64 (498)
123 PF07724 AAA_2: AAA domain (Cd 97.6 9.8E-05 2.1E-09 68.6 5.9 37 67-103 5-44 (171)
124 COG0542 clpA ATP-binding subun 97.6 0.00062 1.3E-08 76.4 13.1 119 61-228 516-651 (786)
125 COG2255 RuvB Holliday junction 97.6 0.00034 7.3E-09 70.2 9.7 50 28-91 29-78 (332)
126 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00058 1.3E-08 78.0 13.0 48 180-227 667-724 (852)
127 CHL00095 clpC Clp protease ATP 97.6 0.00054 1.2E-08 78.0 12.5 118 63-226 536-667 (821)
128 cd03230 ABC_DR_subfamily_A Thi 97.6 0.00066 1.4E-08 62.3 10.9 129 64-221 25-155 (173)
129 TIGR00678 holB DNA polymerase 97.6 0.00024 5.3E-09 65.9 8.1 28 63-90 12-39 (188)
130 CHL00181 cbbX CbbX; Provisiona 97.6 0.00044 9.6E-09 69.3 10.3 24 66-89 60-83 (287)
131 PRK14960 DNA polymerase III su 97.6 0.00057 1.2E-08 75.7 11.8 28 63-90 35-62 (702)
132 PRK04296 thymidine kinase; Pro 97.6 0.00022 4.8E-09 67.0 7.4 38 180-220 78-115 (190)
133 cd01124 KaiC KaiC is a circadi 97.5 0.00057 1.2E-08 62.5 9.9 44 179-222 94-141 (187)
134 TIGR02397 dnaX_nterm DNA polym 97.5 0.00053 1.1E-08 69.3 10.4 45 28-90 17-61 (355)
135 cd03214 ABC_Iron-Siderophores_ 97.5 0.00065 1.4E-08 62.7 10.2 50 172-221 107-158 (180)
136 PF05729 NACHT: NACHT domain 97.5 0.00056 1.2E-08 60.4 9.2 41 67-107 2-46 (166)
137 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 0.00033 7.1E-09 69.3 8.2 48 172-219 149-197 (254)
138 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.00075 1.6E-08 60.5 9.8 47 172-221 80-127 (144)
139 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00033 7.1E-09 65.5 7.7 49 172-220 81-131 (177)
140 PRK14963 DNA polymerase III su 97.5 0.0009 2E-08 72.2 12.0 44 29-90 18-61 (504)
141 KOG2028|consensus 97.5 0.00028 6.1E-09 72.9 7.7 27 64-90 161-187 (554)
142 PRK06645 DNA polymerase III su 97.5 0.00078 1.7E-08 72.8 11.4 45 28-90 24-68 (507)
143 cd03238 ABC_UvrA The excision 97.5 0.00055 1.2E-08 63.9 8.9 50 172-221 97-149 (176)
144 KOG0740|consensus 97.5 0.00018 3.8E-09 75.8 6.0 28 62-89 183-210 (428)
145 PRK13695 putative NTPase; Prov 97.5 0.0012 2.5E-08 60.7 10.7 47 174-221 90-136 (174)
146 cd03247 ABCC_cytochrome_bd The 97.4 0.0016 3.6E-08 59.9 11.3 49 172-221 108-157 (178)
147 cd03232 ABC_PDR_domain2 The pl 97.4 0.0021 4.6E-08 60.0 12.1 51 172-222 118-169 (192)
148 cd03246 ABCC_Protease_Secretio 97.4 0.0019 4.1E-08 59.3 11.6 50 172-221 106-156 (173)
149 PRK14957 DNA polymerase III su 97.4 0.00095 2.1E-08 72.7 11.1 44 29-90 20-63 (546)
150 PRK07764 DNA polymerase III su 97.4 0.00039 8.5E-09 79.0 8.5 44 29-90 19-62 (824)
151 PRK14959 DNA polymerase III su 97.4 0.0016 3.5E-08 71.8 12.8 44 29-90 20-63 (624)
152 PRK14955 DNA polymerase III su 97.4 0.00064 1.4E-08 71.0 9.3 44 29-90 20-63 (397)
153 cd03229 ABC_Class3 This class 97.4 0.0011 2.4E-08 61.1 9.8 50 172-221 110-161 (178)
154 COG0714 MoxR-like ATPases [Gen 97.4 0.00045 9.8E-09 70.1 7.9 43 64-107 42-84 (329)
155 KOG0989|consensus 97.4 0.00093 2E-08 67.6 9.7 53 20-91 31-83 (346)
156 PRK06067 flagellar accessory p 97.4 0.0019 4.1E-08 62.1 11.6 41 61-103 21-62 (234)
157 cd03239 ABC_SMC_head The struc 97.4 0.0013 2.7E-08 61.4 10.0 43 179-221 115-158 (178)
158 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0016 3.5E-08 73.4 12.7 134 22-228 349-482 (744)
159 cd03215 ABC_Carb_Monos_II This 97.4 0.0017 3.7E-08 60.1 10.8 50 172-221 114-164 (182)
160 PRK06305 DNA polymerase III su 97.3 0.00068 1.5E-08 72.2 8.9 44 29-90 21-64 (451)
161 PRK07994 DNA polymerase III su 97.3 0.0013 2.9E-08 72.8 11.4 45 29-91 20-64 (647)
162 PRK08451 DNA polymerase III su 97.3 0.0012 2.7E-08 71.6 11.0 47 179-227 116-162 (535)
163 KOG0741|consensus 97.3 0.00055 1.2E-08 73.5 7.9 28 63-90 254-281 (744)
164 cd03213 ABCG_EPDR ABCG transpo 97.3 0.0027 5.9E-08 59.5 11.8 51 172-222 121-172 (194)
165 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0011 2.4E-08 75.7 10.8 49 342-393 667-725 (852)
166 TIGR02688 conserved hypothetic 97.3 0.0023 4.9E-08 67.7 12.2 25 64-88 208-232 (449)
167 PRK09112 DNA polymerase III su 97.3 0.0013 2.7E-08 68.0 10.2 59 179-252 140-198 (351)
168 PRK14969 DNA polymerase III su 97.3 0.0013 2.8E-08 71.4 10.6 44 29-90 20-63 (527)
169 COG1474 CDC6 Cdc6-related prot 97.3 0.00065 1.4E-08 70.6 7.9 115 63-221 40-166 (366)
170 PF13555 AAA_29: P-loop contai 97.3 0.00019 4.2E-09 56.3 3.1 35 65-101 21-57 (62)
171 PRK14951 DNA polymerase III su 97.3 0.001 2.3E-08 73.4 9.9 44 29-90 20-63 (618)
172 PRK14964 DNA polymerase III su 97.3 0.0017 3.6E-08 69.9 11.1 43 29-89 17-59 (491)
173 PRK05986 cob(I)alamin adenolsy 97.3 0.0012 2.5E-08 62.9 8.8 134 66-227 23-164 (191)
174 PRK14952 DNA polymerase III su 97.3 0.00099 2.2E-08 73.1 9.5 44 29-90 17-60 (584)
175 cd03283 ABC_MutS-like MutS-lik 97.3 0.0026 5.6E-08 60.4 11.1 42 180-221 105-148 (199)
176 TIGR00708 cobA cob(I)alamin ad 97.3 0.00094 2E-08 62.6 8.0 131 68-227 8-146 (173)
177 PRK14950 DNA polymerase III su 97.3 0.0011 2.4E-08 72.7 9.7 44 29-90 20-63 (585)
178 PRK08533 flagellar accessory p 97.3 0.0027 5.9E-08 61.5 11.4 43 179-221 116-163 (230)
179 PRK14965 DNA polymerase III su 97.3 0.0014 3E-08 71.9 10.2 44 29-90 20-63 (576)
180 PRK05800 cobU adenosylcobinami 97.2 0.0016 3.6E-08 60.4 9.2 113 68-223 4-128 (170)
181 cd03228 ABCC_MRP_Like The MRP 97.2 0.0032 6.9E-08 57.7 11.0 49 172-221 106-155 (171)
182 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0023 5E-08 61.3 10.3 48 174-221 102-154 (213)
183 CHL00095 clpC Clp protease ATP 97.2 0.0015 3.3E-08 74.3 10.6 47 342-391 610-666 (821)
184 PRK07133 DNA polymerase III su 97.2 0.0015 3.3E-08 73.1 10.2 44 29-90 22-65 (725)
185 PRK05342 clpX ATP-dependent pr 97.2 0.00081 1.8E-08 70.9 7.4 27 64-90 107-133 (412)
186 PF01637 Arch_ATPase: Archaeal 97.2 0.0013 2.9E-08 61.1 8.2 26 65-90 20-45 (234)
187 COG1126 GlnQ ABC-type polar am 97.2 0.0038 8.3E-08 60.6 11.2 47 172-218 146-193 (240)
188 cd03266 ABC_NatA_sodium_export 97.2 0.0048 1E-07 58.3 11.9 50 172-221 146-196 (218)
189 TIGR00960 3a0501s02 Type II (G 97.2 0.0076 1.7E-07 56.9 13.0 50 172-221 148-198 (216)
190 PRK14954 DNA polymerase III su 97.2 0.0023 5E-08 70.7 10.7 45 29-91 20-64 (620)
191 cd03217 ABC_FeS_Assembly ABC-t 97.1 0.0016 3.4E-08 61.3 8.2 50 172-221 114-164 (200)
192 cd00046 DEXDc DEAD-like helica 97.1 0.0046 1E-07 51.6 10.1 34 66-99 1-35 (144)
193 TIGR02858 spore_III_AA stage I 97.1 0.003 6.4E-08 63.1 10.2 25 66-90 112-136 (270)
194 PRK05896 DNA polymerase III su 97.1 0.0029 6.2E-08 69.6 10.9 28 63-90 36-63 (605)
195 smart00487 DEXDc DEAD-like hel 97.1 0.0089 1.9E-07 53.2 12.4 46 180-226 129-175 (201)
196 PRK13889 conjugal transfer rel 97.1 0.0077 1.7E-07 69.8 14.8 135 20-227 341-475 (988)
197 COG1120 FepC ABC-type cobalami 97.1 0.0065 1.4E-07 60.4 12.4 48 172-219 148-197 (258)
198 PRK14948 DNA polymerase III su 97.1 0.0027 5.8E-08 70.3 10.7 49 24-90 15-63 (620)
199 TIGR01448 recD_rel helicase, p 97.1 0.005 1.1E-07 69.3 13.0 166 20-260 318-485 (720)
200 PRK10820 DNA-binding transcrip 97.1 0.0025 5.3E-08 69.0 10.1 52 180-231 298-359 (520)
201 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0057 1.2E-07 57.6 11.2 43 178-220 106-150 (200)
202 PRK14958 DNA polymerase III su 97.1 0.0031 6.7E-08 68.2 10.6 45 29-91 20-64 (509)
203 cd03269 ABC_putative_ATPase Th 97.1 0.011 2.3E-07 55.7 13.0 50 172-221 138-188 (210)
204 COG1136 SalX ABC-type antimicr 97.1 0.0086 1.9E-07 58.4 12.5 49 172-220 152-202 (226)
205 TIGR02974 phageshock_pspF psp 97.1 0.0021 4.7E-08 65.6 8.7 50 180-229 93-152 (329)
206 PRK15429 formate hydrogenlyase 97.1 0.0027 5.9E-08 70.8 10.3 50 180-229 470-529 (686)
207 cd03243 ABC_MutS_homologs The 97.1 0.0035 7.7E-08 59.0 9.6 45 176-220 104-150 (202)
208 KOG0742|consensus 97.1 0.0015 3.3E-08 68.4 7.6 22 66-87 385-406 (630)
209 PRK09111 DNA polymerase III su 97.1 0.0041 8.9E-08 68.5 11.5 44 29-90 28-71 (598)
210 PRK06647 DNA polymerase III su 97.1 0.0041 8.9E-08 68.1 11.4 44 29-90 20-63 (563)
211 PRK14953 DNA polymerase III su 97.1 0.0036 7.9E-08 67.3 10.7 45 28-90 19-63 (486)
212 TIGR02903 spore_lon_C ATP-depe 97.0 0.0023 5E-08 70.7 9.3 27 63-89 173-199 (615)
213 cd03265 ABC_DrrA DrrA is the A 97.0 0.0066 1.4E-07 57.6 11.2 50 172-221 141-192 (220)
214 PRK11331 5-methylcytosine-spec 97.0 0.0026 5.6E-08 67.8 9.1 28 63-90 192-219 (459)
215 cd03227 ABC_Class2 ABC-type Cl 97.0 0.0087 1.9E-07 54.5 11.4 42 180-221 99-141 (162)
216 cd03226 ABC_cobalt_CbiO_domain 97.0 0.014 3.1E-07 54.7 13.1 50 172-221 136-186 (205)
217 PRK10619 histidine/lysine/argi 97.0 0.0076 1.6E-07 58.7 11.6 50 172-221 162-212 (257)
218 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0032 6.9E-08 57.6 8.3 47 172-221 101-148 (166)
219 PF05970 PIF1: PIF1-like helic 97.0 0.0039 8.4E-08 64.4 9.9 48 25-91 1-48 (364)
220 TIGR03608 L_ocin_972_ABC putat 97.0 0.0085 1.8E-07 56.0 11.4 50 172-221 144-194 (206)
221 TIGR03740 galliderm_ABC gallid 97.0 0.015 3.3E-07 55.3 13.1 50 172-221 134-184 (223)
222 PTZ00293 thymidine kinase; Pro 97.0 0.0016 3.4E-08 62.9 6.4 62 179-252 76-137 (211)
223 TIGR01618 phage_P_loop phage n 97.0 0.0024 5.2E-08 62.0 7.7 24 63-86 10-33 (220)
224 PRK13538 cytochrome c biogenes 97.0 0.01 2.3E-07 55.7 11.7 49 172-220 139-188 (204)
225 PF05621 TniB: Bacterial TniB 96.9 0.0085 1.9E-07 60.7 11.6 56 19-90 31-86 (302)
226 PRK05563 DNA polymerase III su 96.9 0.0025 5.4E-08 69.7 8.4 44 29-90 20-63 (559)
227 TIGR00382 clpX endopeptidase C 96.9 0.0028 6E-08 66.9 8.4 26 65-90 116-141 (413)
228 cd03292 ABC_FtsE_transporter F 96.9 0.016 3.6E-07 54.4 12.9 50 172-221 146-196 (214)
229 PRK08058 DNA polymerase III su 96.9 0.0047 1E-07 63.0 9.7 44 29-90 10-53 (329)
230 PRK10787 DNA-binding ATP-depen 96.9 0.0039 8.5E-08 70.7 9.9 36 65-101 349-384 (784)
231 cd03268 ABC_BcrA_bacitracin_re 96.9 0.016 3.5E-07 54.4 12.6 50 172-221 136-186 (208)
232 TIGR02315 ABC_phnC phosphonate 96.9 0.019 4.1E-07 55.2 13.3 49 172-220 155-205 (243)
233 TIGR02902 spore_lonB ATP-depen 96.9 0.0013 2.8E-08 71.5 5.7 66 22-89 28-110 (531)
234 smart00534 MUTSac ATPase domai 96.9 0.0064 1.4E-07 56.7 9.6 43 179-221 77-122 (185)
235 PRK10536 hypothetical protein; 96.9 0.01 2.2E-07 59.1 11.4 67 180-252 176-244 (262)
236 cd03235 ABC_Metallic_Cations A 96.9 0.022 4.7E-07 53.7 13.3 50 172-221 142-192 (213)
237 PRK11608 pspF phage shock prot 96.9 0.0031 6.6E-08 64.3 8.0 50 180-229 100-159 (326)
238 PRK07471 DNA polymerase III su 96.9 0.0061 1.3E-07 63.3 10.3 44 29-90 23-66 (365)
239 PRK13541 cytochrome c biogenes 96.9 0.0088 1.9E-07 55.8 10.5 50 172-221 133-183 (195)
240 cd03218 ABC_YhbG The ABC trans 96.9 0.0065 1.4E-07 57.9 9.7 49 172-220 143-192 (232)
241 PRK14971 DNA polymerase III su 96.9 0.0057 1.2E-07 67.6 10.4 28 63-90 37-64 (614)
242 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.8 0.016 3.5E-07 55.5 12.3 49 172-220 152-201 (224)
243 TIGR02324 CP_lyasePhnL phospho 96.8 0.025 5.5E-07 53.7 13.5 49 172-220 159-208 (224)
244 TIGR01817 nifA Nif-specific re 96.8 0.0066 1.4E-07 65.7 10.6 50 180-229 290-349 (534)
245 PF13086 AAA_11: AAA domain; P 96.8 0.0013 2.7E-08 61.2 4.3 24 66-89 17-41 (236)
246 cd00544 CobU Adenosylcobinamid 96.8 0.014 2.9E-07 54.3 11.0 45 68-116 2-50 (169)
247 PRK11124 artP arginine transpo 96.8 0.016 3.6E-07 55.7 12.0 50 172-221 151-201 (242)
248 cd03233 ABC_PDR_domain1 The pl 96.8 0.0034 7.3E-08 59.2 7.1 54 172-225 128-183 (202)
249 TIGR03410 urea_trans_UrtE urea 96.8 0.0086 1.9E-07 57.1 10.0 50 172-221 141-192 (230)
250 cd03293 ABC_NrtD_SsuB_transpor 96.8 0.029 6.2E-07 53.3 13.4 50 172-221 141-192 (220)
251 cd03225 ABC_cobalt_CbiO_domain 96.8 0.012 2.5E-07 55.4 10.7 50 172-221 144-194 (211)
252 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.012 2.6E-07 57.1 10.9 43 179-221 109-154 (222)
253 cd03300 ABC_PotA_N PotA is an 96.8 0.02 4.2E-07 55.0 12.4 50 172-221 140-191 (232)
254 COG1618 Predicted nucleotide k 96.8 0.0089 1.9E-07 55.7 9.5 61 177-250 97-157 (179)
255 PF13177 DNA_pol3_delta2: DNA 96.8 0.0061 1.3E-07 55.9 8.5 59 179-252 101-159 (162)
256 COG0470 HolB ATPase involved i 96.8 0.0041 8.9E-08 61.6 7.9 59 179-252 108-166 (325)
257 cd03259 ABC_Carb_Solutes_like 96.8 0.031 6.7E-07 52.7 13.5 50 172-221 140-191 (213)
258 cd03237 ABC_RNaseL_inhibitor_d 96.8 0.022 4.8E-07 55.7 12.8 49 172-220 125-175 (246)
259 TIGR02211 LolD_lipo_ex lipopro 96.8 0.022 4.8E-07 53.9 12.5 50 172-221 151-202 (221)
260 cd01131 PilT Pilus retraction 96.8 0.0038 8.2E-08 59.0 7.2 32 68-99 4-35 (198)
261 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.011 2.4E-07 56.8 10.4 43 178-220 107-152 (216)
262 cd03224 ABC_TM1139_LivF_branch 96.8 0.015 3.1E-07 55.1 11.0 49 172-220 142-191 (222)
263 TIGR02673 FtsE cell division A 96.7 0.021 4.6E-07 53.7 12.1 50 172-221 147-197 (214)
264 PRK13537 nodulation ABC transp 96.7 0.011 2.3E-07 59.7 10.7 50 172-221 148-198 (306)
265 PF00270 DEAD: DEAD/DEAH box h 96.7 0.023 4.9E-07 50.6 11.7 46 180-225 119-166 (169)
266 TIGR02868 CydC thiol reductant 96.7 0.0096 2.1E-07 63.9 10.9 48 172-220 480-528 (529)
267 PF05673 DUF815: Protein of un 96.7 0.005 1.1E-07 60.7 7.9 28 64-91 51-78 (249)
268 COG1131 CcmA ABC-type multidru 96.7 0.023 5E-07 57.1 12.9 54 172-226 146-201 (293)
269 cd03262 ABC_HisP_GlnQ_permease 96.7 0.025 5.5E-07 53.1 12.5 50 172-221 145-195 (213)
270 cd03231 ABC_CcmA_heme_exporter 96.7 0.01 2.2E-07 55.8 9.7 50 172-221 135-185 (201)
271 TIGR01184 ntrCD nitrate transp 96.7 0.031 6.7E-07 53.7 13.3 50 172-221 124-175 (230)
272 TIGR01650 PD_CobS cobaltochela 96.7 0.0013 2.9E-08 67.2 4.1 40 65-105 64-103 (327)
273 cd01121 Sms Sms (bacterial rad 96.7 0.0083 1.8E-07 62.5 9.9 40 62-102 79-118 (372)
274 PRK05564 DNA polymerase III su 96.7 0.0061 1.3E-07 61.4 8.7 59 179-252 92-150 (313)
275 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.018 3.8E-07 55.0 11.2 45 177-221 105-151 (204)
276 TIGR01277 thiQ thiamine ABC tr 96.7 0.031 6.8E-07 52.8 12.9 50 172-221 138-189 (213)
277 PRK13539 cytochrome c biogenes 96.7 0.012 2.6E-07 55.6 9.9 55 172-227 137-192 (207)
278 COG4133 CcmA ABC-type transpor 96.7 0.014 3.1E-07 55.6 10.2 50 172-221 140-190 (209)
279 cd03256 ABC_PhnC_transporter A 96.7 0.027 5.7E-07 54.0 12.4 49 172-220 154-204 (241)
280 TIGR03864 PQQ_ABC_ATP ABC tran 96.7 0.051 1.1E-06 52.1 14.3 50 172-221 142-193 (236)
281 cd03301 ABC_MalK_N The N-termi 96.7 0.028 6E-07 52.9 12.2 50 172-221 140-191 (213)
282 cd03258 ABC_MetN_methionine_tr 96.7 0.042 9.2E-07 52.5 13.6 49 172-220 150-200 (233)
283 TIGR01188 drrA daunorubicin re 96.6 0.036 7.8E-07 55.6 13.6 49 172-220 134-183 (302)
284 cd03219 ABC_Mj1267_LivG_branch 96.6 0.021 4.6E-07 54.6 11.4 49 172-220 153-202 (236)
285 PRK13639 cbiO cobalt transport 96.6 0.049 1.1E-06 53.9 14.2 50 172-221 147-197 (275)
286 PRK13826 Dtr system oriT relax 96.6 0.025 5.3E-07 66.3 13.8 135 20-227 376-510 (1102)
287 TIGR03005 ectoine_ehuA ectoine 96.6 0.031 6.7E-07 54.2 12.6 50 172-221 156-207 (252)
288 cd03261 ABC_Org_Solvent_Resist 96.6 0.046 1E-06 52.4 13.5 49 172-220 146-196 (235)
289 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.051 1.1E-06 51.3 13.6 50 172-221 150-201 (218)
290 TIGR00602 rad24 checkpoint pro 96.6 0.01 2.3E-07 65.8 10.1 24 66-89 111-134 (637)
291 PRK05022 anaerobic nitric oxid 96.6 0.0071 1.5E-07 65.2 8.7 50 180-229 281-340 (509)
292 PRK11823 DNA repair protein Ra 96.6 0.013 2.9E-07 62.4 10.6 40 62-102 77-116 (446)
293 PRK10253 iron-enterobactin tra 96.6 0.026 5.7E-07 55.4 12.0 49 172-220 153-203 (265)
294 TIGR03771 anch_rpt_ABC anchore 96.6 0.037 8.1E-07 52.9 12.7 50 172-221 123-173 (223)
295 PRK11247 ssuB aliphatic sulfon 96.6 0.02 4.3E-07 56.4 11.0 50 172-221 143-194 (257)
296 TIGR01189 ccmA heme ABC export 96.6 0.04 8.7E-07 51.5 12.5 55 172-227 137-192 (198)
297 cd03264 ABC_drug_resistance_li 96.6 0.045 9.7E-07 51.5 13.0 48 172-220 140-188 (211)
298 KOG0991|consensus 96.6 0.015 3.3E-07 57.3 9.8 102 65-221 48-153 (333)
299 cd03276 ABC_SMC6_euk Eukaryoti 96.6 0.023 5E-07 53.8 10.9 50 172-221 119-176 (198)
300 PF09848 DUF2075: Uncharacteri 96.6 0.0085 1.8E-07 61.5 8.6 23 67-89 3-25 (352)
301 PRK11388 DNA-binding transcrip 96.6 0.0052 1.1E-07 67.9 7.4 50 180-229 416-475 (638)
302 cd03250 ABCC_MRP_domain1 Domai 96.5 0.019 4.1E-07 53.8 10.2 50 172-221 137-188 (204)
303 PRK09493 glnQ glutamine ABC tr 96.5 0.041 8.8E-07 52.9 12.7 50 172-221 146-196 (240)
304 PRK10908 cell division protein 96.5 0.057 1.2E-06 51.3 13.6 50 172-221 147-197 (222)
305 PRK09544 znuC high-affinity zi 96.5 0.025 5.4E-07 55.4 11.4 50 172-221 130-181 (251)
306 PRK13648 cbiO cobalt transport 96.5 0.052 1.1E-06 53.4 13.5 50 172-221 152-203 (269)
307 PRK08699 DNA polymerase III su 96.5 0.025 5.4E-07 57.9 11.5 59 179-252 112-170 (325)
308 cd03297 ABC_ModC_molybdenum_tr 96.5 0.038 8.3E-07 52.2 12.0 50 172-221 141-192 (214)
309 PRK05707 DNA polymerase III su 96.5 0.017 3.7E-07 59.2 10.2 59 179-252 105-163 (328)
310 PRK11629 lolD lipoprotein tran 96.5 0.053 1.2E-06 51.9 13.1 50 172-221 155-206 (233)
311 TIGR03258 PhnT 2-aminoethylpho 96.5 0.029 6.2E-07 58.2 11.9 49 172-220 147-198 (362)
312 PRK11248 tauB taurine transpor 96.5 0.058 1.3E-06 52.8 13.6 49 172-220 138-188 (255)
313 cd03298 ABC_ThiQ_thiamine_tran 96.5 0.041 8.8E-07 51.8 12.0 49 172-220 138-188 (211)
314 PRK11614 livF leucine/isoleuci 96.5 0.029 6.2E-07 53.9 11.2 49 172-220 147-196 (237)
315 TIGR01288 nodI ATP-binding ABC 96.5 0.027 5.8E-07 56.6 11.3 50 172-221 145-195 (303)
316 cd03263 ABC_subfamily_A The AB 96.5 0.05 1.1E-06 51.4 12.6 49 172-221 143-192 (220)
317 PF00931 NB-ARC: NB-ARC domain 96.5 0.012 2.6E-07 57.4 8.6 28 63-90 17-44 (287)
318 cd03299 ABC_ModC_like Archeal 96.5 0.026 5.5E-07 54.4 10.7 50 172-221 139-190 (235)
319 PRK13638 cbiO cobalt transport 96.5 0.034 7.5E-07 54.7 11.8 49 172-220 146-195 (271)
320 PRK13543 cytochrome c biogenes 96.5 0.06 1.3E-06 51.0 13.1 49 172-220 147-196 (214)
321 PRK11174 cysteine/glutathione 96.4 0.0055 1.2E-07 66.6 6.7 48 172-220 495-543 (588)
322 PRK13657 cyclic beta-1,2-gluca 96.4 0.0066 1.4E-07 66.2 7.3 49 172-221 481-530 (588)
323 TIGR03411 urea_trans_UrtD urea 96.4 0.027 5.8E-07 54.2 10.7 48 172-220 153-201 (242)
324 PRK10895 lipopolysaccharide AB 96.4 0.041 8.9E-07 52.9 12.0 49 172-220 147-196 (241)
325 KOG1514|consensus 96.4 0.0051 1.1E-07 68.0 6.2 59 179-237 507-575 (767)
326 PRK11231 fecE iron-dicitrate t 96.4 0.045 9.8E-07 53.2 12.3 49 172-220 148-197 (255)
327 TIGR00968 3a0106s01 sulfate AB 96.4 0.022 4.8E-07 54.9 10.0 50 172-221 140-191 (237)
328 cd03279 ABC_sbcCD SbcCD and ot 96.4 0.012 2.6E-07 55.9 8.1 41 180-220 151-192 (213)
329 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.4 0.045 9.8E-07 52.5 12.1 49 172-221 149-198 (238)
330 TIGR01069 mutS2 MutS2 family p 96.4 0.022 4.8E-07 64.7 11.4 44 179-222 401-446 (771)
331 PRK13652 cbiO cobalt transport 96.4 0.063 1.4E-06 53.1 13.4 50 172-221 147-198 (277)
332 cd03286 ABC_MSH6_euk MutS6 hom 96.4 0.025 5.5E-07 54.6 10.3 43 179-221 108-153 (218)
333 TIGR02982 heterocyst_DevA ABC 96.4 0.086 1.9E-06 50.1 13.7 50 172-221 151-202 (220)
334 PRK10575 iron-hydroxamate tran 96.4 0.041 8.8E-07 54.0 11.8 50 172-221 157-208 (265)
335 PRK09361 radB DNA repair and r 96.4 0.041 8.9E-07 52.4 11.5 39 64-103 22-60 (225)
336 PRK11176 lipid transporter ATP 96.4 0.028 6E-07 61.1 11.6 49 172-221 490-539 (582)
337 COG0466 Lon ATP-dependent Lon 96.4 0.0062 1.3E-07 67.6 6.5 24 67-90 352-375 (782)
338 cd03253 ABCC_ATM1_transporter 96.4 0.041 8.8E-07 52.6 11.4 49 172-221 147-196 (236)
339 TIGR00955 3a01204 The Eye Pigm 96.4 0.043 9.3E-07 60.6 13.1 55 172-226 176-231 (617)
340 PRK10584 putative ABC transpor 96.4 0.042 9.2E-07 52.3 11.5 50 172-221 156-207 (228)
341 PRK13651 cobalt transporter AT 96.3 0.08 1.7E-06 53.5 13.9 49 172-220 175-224 (305)
342 TIGR01842 type_I_sec_PrtD type 96.3 0.019 4.1E-07 62.1 10.0 50 172-221 464-514 (544)
343 PRK10790 putative multidrug tr 96.3 0.015 3.3E-07 63.3 9.3 49 172-221 486-535 (592)
344 PRK13640 cbiO cobalt transport 96.3 0.067 1.5E-06 53.1 13.1 50 172-221 153-204 (282)
345 cd03254 ABCC_Glucan_exporter_l 96.3 0.11 2.4E-06 49.4 14.1 49 172-221 149-198 (229)
346 PRK09536 btuD corrinoid ABC tr 96.3 0.027 5.8E-07 59.3 10.7 49 172-220 149-198 (402)
347 cd03236 ABC_RNaseL_inhibitor_d 96.3 0.12 2.6E-06 50.9 14.6 50 172-221 149-199 (255)
348 PRK15424 propionate catabolism 96.3 0.014 3E-07 63.6 8.8 50 181-230 323-382 (538)
349 TIGR02031 BchD-ChlD magnesium 96.3 0.0049 1.1E-07 67.8 5.3 36 65-100 16-52 (589)
350 TIGR01420 pilT_fam pilus retra 96.3 0.0093 2E-07 61.2 7.0 36 65-100 121-157 (343)
351 TIGR02314 ABC_MetN D-methionin 96.3 0.025 5.4E-07 58.3 10.1 49 172-220 150-200 (343)
352 TIGR03522 GldA_ABC_ATP gliding 96.3 0.03 6.6E-07 56.2 10.5 49 172-221 143-192 (301)
353 PRK14250 phosphate ABC transpo 96.3 0.029 6.3E-07 54.2 10.0 50 172-221 141-192 (241)
354 cd03294 ABC_Pro_Gly_Bertaine T 96.3 0.091 2E-06 51.8 13.7 49 172-220 170-220 (269)
355 PRK09452 potA putrescine/sperm 96.3 0.046 1E-06 57.0 12.2 50 172-221 154-205 (375)
356 TIGR01186 proV glycine betaine 96.3 0.034 7.3E-07 57.8 11.1 50 172-221 139-190 (363)
357 PRK05973 replicative DNA helic 96.3 0.041 8.8E-07 54.1 11.0 45 65-110 64-111 (237)
358 TIGR02329 propionate_PrpR prop 96.3 0.018 3.8E-07 62.7 9.3 50 180-229 307-366 (526)
359 PRK13546 teichoic acids export 96.3 0.067 1.5E-06 52.9 12.6 49 172-220 153-202 (264)
360 cd03260 ABC_PstB_phosphate_tra 96.2 0.12 2.7E-06 49.1 14.0 49 172-221 151-200 (227)
361 PRK07399 DNA polymerase III su 96.2 0.033 7.1E-07 56.7 10.6 58 179-252 123-180 (314)
362 PRK13536 nodulation factor exp 96.2 0.026 5.6E-07 58.0 9.8 50 172-221 182-232 (340)
363 cd03244 ABCC_MRP_domain2 Domai 96.2 0.082 1.8E-06 50.0 12.6 49 172-221 149-198 (221)
364 KOG1051|consensus 96.2 0.039 8.6E-07 63.1 12.1 115 65-228 591-718 (898)
365 cd03369 ABCC_NFT1 Domain 2 of 96.2 0.024 5.2E-07 53.3 8.9 48 172-220 135-183 (207)
366 PRK10419 nikE nickel transport 96.2 0.072 1.6E-06 52.4 12.6 49 172-220 161-211 (268)
367 cd03240 ABC_Rad50 The catalyti 96.2 0.028 6.1E-07 53.4 9.3 48 173-220 132-182 (204)
368 PRK14261 phosphate ABC transpo 96.2 0.089 1.9E-06 51.1 13.0 49 172-221 159-208 (253)
369 PRK11153 metN DL-methionine tr 96.2 0.061 1.3E-06 55.2 12.3 49 172-220 150-200 (343)
370 cd03267 ABC_NatA_like Similar 96.2 0.079 1.7E-06 51.1 12.5 50 172-221 163-214 (236)
371 COG3845 ABC-type uncharacteriz 96.2 0.042 9.1E-07 58.8 11.2 50 172-221 150-200 (501)
372 cd03251 ABCC_MsbA MsbA is an e 96.2 0.033 7E-07 53.2 9.6 49 172-221 148-197 (234)
373 PRK13636 cbiO cobalt transport 96.2 0.12 2.6E-06 51.4 13.9 50 172-221 151-202 (283)
374 PRK13633 cobalt transporter AT 96.2 0.1 2.2E-06 51.8 13.3 50 172-221 154-205 (280)
375 TIGR03265 PhnT2 putative 2-ami 96.2 0.053 1.2E-06 56.0 11.8 49 172-220 144-194 (353)
376 TIGR02857 CydD thiol reductant 96.2 0.013 2.9E-07 62.9 7.6 49 172-221 468-517 (529)
377 PRK09984 phosphonate/organopho 96.2 0.075 1.6E-06 51.9 12.3 50 172-221 162-213 (262)
378 PRK11650 ugpC glycerol-3-phosp 96.1 0.045 9.6E-07 56.6 11.1 50 172-221 144-195 (356)
379 TIGR03415 ABC_choXWV_ATP choli 96.1 0.043 9.3E-07 57.5 11.1 50 172-221 174-225 (382)
380 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0096 2.1E-07 61.8 6.1 27 64-90 77-103 (361)
381 PRK13650 cbiO cobalt transport 96.1 0.14 3.1E-06 50.7 14.3 50 172-221 150-201 (279)
382 PRK10938 putative molybdenum t 96.1 0.059 1.3E-06 57.5 12.3 50 172-221 145-195 (490)
383 PRK14269 phosphate ABC transpo 96.1 0.061 1.3E-06 52.1 11.4 48 172-220 152-200 (246)
384 PF13191 AAA_16: AAA ATPase do 96.1 0.0045 9.8E-08 56.0 3.3 30 63-92 22-51 (185)
385 COG1122 CbiO ABC-type cobalt t 96.1 0.028 6E-07 55.1 8.9 48 171-218 147-196 (235)
386 cd00268 DEADc DEAD-box helicas 96.1 0.15 3.2E-06 47.2 13.5 46 178-224 141-187 (203)
387 TIGR02203 MsbA_lipidA lipid A 96.1 0.043 9.3E-07 59.4 11.3 48 172-220 479-527 (571)
388 PRK15439 autoinducer 2 ABC tra 96.1 0.061 1.3E-06 57.9 12.4 50 172-221 150-200 (510)
389 PRK10789 putative multidrug tr 96.1 0.03 6.5E-07 61.0 10.1 49 172-221 461-510 (569)
390 cd01125 repA Hexameric Replica 96.1 0.055 1.2E-06 52.3 10.8 49 68-116 4-66 (239)
391 PRK11144 modC molybdate transp 96.1 0.055 1.2E-06 55.7 11.4 49 172-220 138-188 (352)
392 PLN03211 ABC transporter G-25; 96.1 0.069 1.5E-06 59.7 13.0 54 172-225 216-270 (659)
393 TIGR02237 recomb_radB DNA repa 96.1 0.035 7.7E-07 52.0 9.2 39 63-102 10-48 (209)
394 cd03272 ABC_SMC3_euk Eukaryoti 96.1 0.044 9.5E-07 52.6 10.0 47 173-220 169-220 (243)
395 PRK15112 antimicrobial peptide 96.1 0.08 1.7E-06 52.0 12.1 49 172-220 159-209 (267)
396 PRK05703 flhF flagellar biosyn 96.1 0.042 9.2E-07 58.2 10.7 38 65-102 221-259 (424)
397 PRK10070 glycine betaine trans 96.1 0.059 1.3E-06 56.7 11.7 50 172-221 174-225 (400)
398 PRK13549 xylose transporter AT 96.0 0.043 9.3E-07 58.9 10.7 49 172-220 153-202 (506)
399 PF03969 AFG1_ATPase: AFG1-lik 96.0 0.016 3.5E-07 60.1 7.2 76 175-250 280-358 (362)
400 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.056 1.2E-06 52.3 10.5 42 180-221 126-171 (237)
401 PF06309 Torsin: Torsin; Inte 96.0 0.014 3E-07 52.1 5.7 41 67-107 55-95 (127)
402 PRK11432 fbpC ferric transport 96.0 0.056 1.2E-06 55.8 11.0 49 172-220 146-196 (351)
403 COG4618 ArpD ABC-type protease 96.0 0.038 8.2E-07 59.5 9.9 50 172-221 482-532 (580)
404 PRK15177 Vi polysaccharide exp 96.0 0.1 2.2E-06 49.7 12.0 48 172-220 114-162 (213)
405 PF02572 CobA_CobO_BtuR: ATP:c 95.9 0.041 8.8E-07 51.6 8.8 132 68-227 6-145 (172)
406 cd01394 radB RadB. The archaea 95.9 0.03 6.4E-07 53.0 8.1 34 66-100 20-53 (218)
407 PRK13545 tagH teichoic acids e 95.9 0.13 2.8E-06 56.2 13.7 50 172-221 153-203 (549)
408 TIGR00416 sms DNA repair prote 95.9 0.056 1.2E-06 57.8 10.9 40 62-102 91-130 (454)
409 TIGR02442 Cob-chelat-sub cobal 95.9 0.025 5.3E-07 62.8 8.5 25 66-90 26-50 (633)
410 TIGR01194 cyc_pep_trnsptr cycl 95.9 0.032 6.8E-07 60.7 9.2 50 172-221 480-531 (555)
411 cd03245 ABCC_bacteriocin_expor 95.9 0.13 2.7E-06 48.7 12.2 49 172-221 150-199 (220)
412 PF04851 ResIII: Type III rest 95.9 0.015 3.3E-07 52.0 5.7 49 24-90 2-50 (184)
413 PRK11000 maltose/maltodextrin 95.9 0.045 9.8E-07 56.8 9.9 49 172-220 143-193 (369)
414 TIGR01193 bacteriocin_ABC ABC- 95.9 0.046 1E-06 61.0 10.6 48 172-221 621-669 (708)
415 TIGR01187 potA spermidine/putr 95.9 0.085 1.8E-06 53.7 11.6 49 172-220 110-160 (325)
416 TIGR03375 type_I_sec_LssB type 95.9 0.11 2.3E-06 58.0 13.3 49 172-221 611-660 (694)
417 PRK10762 D-ribose transporter 95.9 0.16 3.4E-06 54.5 14.1 50 172-221 151-201 (501)
418 PRK14259 phosphate ABC transpo 95.8 0.11 2.3E-06 51.2 11.9 48 172-220 164-212 (269)
419 PRK14722 flhF flagellar biosyn 95.8 0.056 1.2E-06 56.5 10.2 37 65-101 137-174 (374)
420 PRK11607 potG putrescine trans 95.8 0.1 2.3E-06 54.4 12.2 49 172-220 159-209 (377)
421 cd03278 ABC_SMC_barmotin Barmo 95.8 0.067 1.5E-06 50.5 9.9 42 179-221 134-176 (197)
422 PRK11361 acetoacetate metaboli 95.8 0.014 3.1E-07 61.1 5.8 50 181-230 238-297 (457)
423 PRK00409 recombination and DNA 95.8 0.065 1.4E-06 61.0 11.3 43 179-221 406-450 (782)
424 KOG0061|consensus 95.8 0.072 1.6E-06 59.0 11.4 56 172-227 180-236 (613)
425 TIGR03269 met_CoM_red_A2 methy 95.8 0.15 3.3E-06 54.8 13.7 50 172-221 178-229 (520)
426 cd03248 ABCC_TAP TAP, the Tran 95.8 0.18 3.9E-06 47.9 12.8 49 172-221 160-209 (226)
427 PF01078 Mg_chelatase: Magnesi 95.8 0.0067 1.5E-07 58.3 3.0 26 65-90 22-47 (206)
428 COG1125 OpuBA ABC-type proline 95.8 0.11 2.5E-06 51.9 11.5 45 173-217 146-192 (309)
429 COG1117 PstB ABC-type phosphat 95.8 0.18 3.8E-06 49.4 12.5 49 172-220 159-208 (253)
430 TIGR02204 MsbA_rel ABC transpo 95.8 0.15 3.3E-06 55.3 13.6 49 172-221 486-535 (576)
431 PRK08769 DNA polymerase III su 95.8 0.077 1.7E-06 54.3 10.7 58 180-252 113-170 (319)
432 TIGR01192 chvA glucan exporter 95.7 0.026 5.7E-07 61.8 7.7 49 172-221 481-530 (585)
433 PRK06964 DNA polymerase III su 95.7 0.066 1.4E-06 55.3 10.1 59 179-252 131-189 (342)
434 PRK03695 vitamin B12-transport 95.7 0.036 7.8E-07 53.9 7.8 50 172-221 136-193 (248)
435 PRK10851 sulfate/thiosulfate t 95.7 0.11 2.4E-06 53.7 11.7 49 172-220 146-196 (353)
436 TIGR01587 cas3_core CRISPR-ass 95.7 0.14 3E-06 52.0 12.3 45 181-225 125-169 (358)
437 TIGR03797 NHPM_micro_ABC2 NHPM 95.7 0.051 1.1E-06 60.5 9.8 47 172-221 598-645 (686)
438 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.13 2.9E-06 50.6 11.8 41 180-220 131-175 (259)
439 PRK11160 cysteine/glutathione 95.7 0.02 4.2E-07 62.6 6.3 49 172-221 485-534 (574)
440 PRK15064 ABC transporter ATP-b 95.6 0.065 1.4E-06 57.9 10.1 46 172-220 165-211 (530)
441 PRK09473 oppD oligopeptide tra 95.6 0.29 6.3E-06 50.0 14.4 50 172-221 171-222 (330)
442 PRK14275 phosphate ABC transpo 95.6 0.22 4.7E-06 49.7 13.1 48 172-220 192-240 (286)
443 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.16 3.4E-06 48.4 11.7 41 180-220 121-165 (229)
444 TIGR02142 modC_ABC molybdenum 95.6 0.12 2.6E-06 53.2 11.6 50 172-221 141-192 (354)
445 PRK15079 oligopeptide ABC tran 95.6 0.12 2.6E-06 52.9 11.5 49 172-220 171-221 (331)
446 TIGR03796 NHPM_micro_ABC1 NHPM 95.6 0.076 1.6E-06 59.3 10.8 47 172-221 625-672 (710)
447 COG4555 NatA ABC-type Na+ tran 95.5 0.23 4.9E-06 48.3 12.2 49 172-220 143-192 (245)
448 COG4988 CydD ABC-type transpor 95.5 0.074 1.6E-06 58.0 10.0 49 172-221 466-515 (559)
449 TIGR02633 xylG D-xylose ABC tr 95.5 0.16 3.4E-06 54.4 12.5 49 172-220 151-200 (500)
450 cd03115 SRP The signal recogni 95.5 0.15 3.3E-06 46.4 10.8 31 68-99 3-33 (173)
451 cd03289 ABCC_CFTR2 The CFTR su 95.5 0.03 6.4E-07 55.8 6.6 49 172-221 148-197 (275)
452 PRK04040 adenylate kinase; Pro 95.5 0.019 4.1E-07 54.1 4.9 42 65-107 2-43 (188)
453 PRK10982 galactose/methyl gala 95.5 0.17 3.7E-06 54.0 12.8 50 172-221 144-194 (491)
454 COG1132 MdlB ABC-type multidru 95.5 0.022 4.7E-07 61.9 6.0 48 172-220 475-523 (567)
455 TIGR02633 xylG D-xylose ABC tr 95.5 0.13 2.8E-06 55.1 11.8 50 172-221 413-463 (500)
456 COG4778 PhnL ABC-type phosphon 95.5 0.11 2.3E-06 49.4 9.6 44 173-216 163-207 (235)
457 COG1221 PspF Transcriptional r 95.5 0.029 6.3E-07 59.0 6.6 46 180-225 173-228 (403)
458 PRK13409 putative ATPase RIL; 95.5 0.17 3.6E-06 55.9 12.8 49 172-220 463-513 (590)
459 TIGR00956 3a01205 Pleiotropic 95.5 0.082 1.8E-06 63.8 11.2 55 172-226 219-275 (1394)
460 KOG0735|consensus 95.5 0.11 2.3E-06 58.2 11.0 29 62-90 428-456 (952)
461 TIGR00368 Mg chelatase-related 95.5 0.033 7.2E-07 60.2 7.1 48 180-227 295-354 (499)
462 PF07726 AAA_3: ATPase family 95.5 0.0096 2.1E-07 53.4 2.5 32 68-100 2-33 (131)
463 TIGR02030 BchI-ChlI magnesium 95.4 0.013 2.7E-07 60.4 3.7 26 65-90 25-50 (337)
464 TIGR02760 TraI_TIGR conjugativ 95.4 0.2 4.4E-06 62.3 14.6 119 65-220 446-566 (1960)
465 TIGR01846 type_I_sec_HlyB type 95.4 0.073 1.6E-06 59.4 9.9 49 172-221 603-652 (694)
466 PRK13709 conjugal transfer nic 95.4 0.15 3.4E-06 62.4 13.2 43 180-227 1062-1104(1747)
467 PRK11308 dppF dipeptide transp 95.4 0.35 7.7E-06 49.4 14.1 49 172-220 164-214 (327)
468 TIGR03880 KaiC_arch_3 KaiC dom 95.4 0.16 3.4E-06 48.4 10.8 42 180-221 107-154 (224)
469 PF13245 AAA_19: Part of AAA d 95.4 0.035 7.6E-07 44.9 5.4 45 66-110 10-58 (76)
470 PRK00131 aroK shikimate kinase 95.3 0.016 3.5E-07 51.9 3.7 27 64-90 3-29 (175)
471 PRK13409 putative ATPase RIL; 95.3 0.23 5.1E-06 54.8 13.3 49 172-221 222-271 (590)
472 COG1118 CysA ABC-type sulfate/ 95.3 0.04 8.7E-07 56.1 6.6 48 172-219 147-196 (345)
473 cd03285 ABC_MSH2_euk MutS2 hom 95.3 0.16 3.4E-06 49.1 10.6 23 65-87 30-52 (222)
474 cd00984 DnaB_C DnaB helicase C 95.3 0.13 2.8E-06 49.2 10.0 37 66-102 14-50 (242)
475 PRK10923 glnG nitrogen regulat 95.3 0.04 8.7E-07 58.2 7.0 49 181-229 233-291 (469)
476 PRK11022 dppD dipeptide transp 95.3 0.2 4.4E-06 51.0 11.9 49 172-220 163-213 (326)
477 PTZ00424 helicase 45; Provisio 95.3 0.21 4.6E-06 51.3 12.2 48 178-226 168-216 (401)
478 PRK14264 phosphate ABC transpo 95.3 0.18 3.8E-06 50.8 11.3 48 172-220 210-258 (305)
479 PLN03210 Resistant to P. syrin 95.3 0.064 1.4E-06 63.4 9.3 36 63-98 205-240 (1153)
480 PF13207 AAA_17: AAA domain; P 95.3 0.016 3.5E-07 49.2 3.2 23 68-90 2-24 (121)
481 PF00488 MutS_V: MutS domain V 95.3 0.29 6.3E-06 47.8 12.4 43 179-221 121-166 (235)
482 cd03288 ABCC_SUR2 The SUR doma 95.2 0.22 4.7E-06 48.7 11.5 49 172-221 166-215 (257)
483 PRK10535 macrolide transporter 95.2 0.19 4.1E-06 55.9 12.3 50 172-221 154-204 (648)
484 PRK13764 ATPase; Provisional 95.2 0.055 1.2E-06 59.8 7.9 33 64-97 256-288 (602)
485 KOG0056|consensus 95.2 0.32 6.9E-06 52.7 13.1 151 63-217 562-730 (790)
486 PLN03232 ABC transporter C fam 95.2 0.074 1.6E-06 64.6 9.6 49 172-221 750-800 (1495)
487 PRK09862 putative ATP-dependen 95.2 0.043 9.3E-07 59.5 6.9 27 64-90 209-235 (506)
488 TIGR00958 3a01208 Conjugate Tr 95.2 0.032 6.9E-07 62.5 6.1 47 172-221 627-674 (711)
489 TIGR00390 hslU ATP-dependent p 95.2 0.017 3.6E-07 61.3 3.6 30 62-91 44-73 (441)
490 PF13671 AAA_33: AAA domain; P 95.1 0.017 3.8E-07 50.3 3.1 23 68-90 2-24 (143)
491 PRK04841 transcriptional regul 95.1 0.12 2.6E-06 58.6 10.6 25 65-89 32-56 (903)
492 PRK04328 hypothetical protein; 95.1 0.27 5.8E-06 48.2 11.6 42 180-221 128-173 (249)
493 TIGR00954 3a01203 Peroxysomal 95.1 0.35 7.5E-06 54.0 13.9 47 172-221 592-639 (659)
494 COG0606 Predicted ATPase with 95.1 0.012 2.7E-07 62.7 2.2 28 63-90 196-223 (490)
495 COG0410 LivF ABC-type branched 95.1 0.091 2E-06 51.5 8.0 48 169-216 143-192 (237)
496 PRK12727 flagellar biosynthesi 95.0 0.18 3.9E-06 55.1 10.9 49 178-227 426-476 (559)
497 PF13238 AAA_18: AAA domain; P 95.0 0.021 4.6E-07 48.3 3.2 22 68-89 1-22 (129)
498 COG1129 MglA ABC-type sugar tr 95.0 0.068 1.5E-06 57.7 7.7 114 70-220 39-204 (500)
499 PRK15134 microcin C ABC transp 95.0 0.22 4.8E-06 53.7 11.7 49 172-220 166-216 (529)
500 PRK12723 flagellar biosynthesi 95.0 0.25 5.5E-06 51.9 11.7 48 178-226 252-303 (388)
No 1
>KOG2383|consensus
Probab=100.00 E-value=4.7e-99 Score=760.25 Aligned_cols=382 Identities=46% Similarity=0.791 Sum_probs=339.9
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH-hhcCCCCC---------Ccc----ccccc----------cCC
Q psy318 8 SSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSI-KNYAPQSK---------SMF----SFFQD----------KVK 63 (438)
Q Consensus 8 ~~~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l-~~~~~~~~---------~~~----~~~~~----------~~~ 63 (438)
..+|+..|..+|..|.++.|++|+.++..+.+|+.++ +.|.|.-+ +|. +.|.+ .+.
T Consensus 33 ~~tpl~~y~k~V~~g~l~~d~yq~~~~~~~~~L~~~~~e~y~p~~~~~~~~~e~~r~i~~l~k~~~~~k~~~~~a~~~~~ 112 (467)
T KOG2383|consen 33 LLTPLKEYSKLVNTGTLKSDPYQRKTVSAFERLYHELIEYYDPRLKQWSAKREEGRWIFELKKSFDDGKLDTPNASGQPG 112 (467)
T ss_pred ccCcchHHHhHhccCcccCCchhhhhHHHHHHHHhhhhhhcCccccccccchhhhhHHHHHHHHHhccCCCCcccccCCC
Confidence 4589999999999999999999999999999999954 44555421 111 11111 245
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh-hcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC-ETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK 142 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l-~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (438)
+||||||||+||||||||||+||+++ ++.+|+|+|||.||+.||++||+++++.+..+. +
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~-------------~------ 173 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKP-------------G------ 173 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCc-------------c------
Confidence 69999999999999999999999888 578899999999999999999999887632110 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 143 EREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
..++...||++.||.+++.++.||||||||++|++|||+|.+||..|+..|+++|+||||+|
T Consensus 174 ------------------~a~~~~~Dpl~~vA~eIa~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P 235 (467)
T KOG2383|consen 174 ------------------YAKSWEIDPLPVVADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAP 235 (467)
T ss_pred ------------------ccccccCCccHHHHHHHhhhceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCCh
Confidence 00112469999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCcCCcccHHHHHHhhccccccccccchhccccccccCCCceeecCch-hHHHHHHHHHHHHcCCCCCCccCc
Q psy318 223 DDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNF-ANEKKLHGIFKLLCSQENDIVRPR 301 (438)
Q Consensus 223 ~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~l~~~~~~~~~~~ 301 (438)
++||+||+||+.|.|||+.|+++|.|+.|+|+.|||+... ++++.||++++ +.+..++++|+.+++.+++...++
T Consensus 236 ~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDYR~~~~----~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~~~~ 311 (467)
T KOG2383|consen 236 EDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYRRKAK----SAGENYYFISETDVETVLKEWFKLLAADQNDGTRQR 311 (467)
T ss_pred HHHhhcchhhhhhhhHHHHHHHhheEEecCCccchhhccC----CCCceeEecChhhHHHHHHHHHHHHhccCCCCCCCc
Confidence 9999999999999999999999999999999999995443 46677887777 889999999999998888777888
Q ss_pred eeccCCceEEeccccCcEEEeeHHHHhcCCCChhhHHHHhhccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEE
Q psy318 302 VITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLV 381 (438)
Q Consensus 302 ~l~v~gR~l~v~~~~~~va~f~F~eLC~~plg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~ 381 (438)
+++|+||+|.||++|++||+|||+|||++|+||+|||.||++||||+|+|||+|++.++|++||||||||+|||+++||+
T Consensus 312 ~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~fhti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv 391 (467)
T KOG2383|consen 312 TLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLV 391 (467)
T ss_pred ceeeecceEEecccCCCcccccHHHHhCCccchHHHHHHHhhcceeEeeccchhhhHHHHHHhhHhHHHHHHhhccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhhccccccCCCCChHHHHhHhhhccccCCCCCccccccccccccc
Q psy318 382 ISSDVPLNKLFSNEAVIDTHSDEHRMLMDDLNIKANDGTDANLKSNIFTVGTS 434 (438)
Q Consensus 382 ~~a~~~~~~Lf~~~~~~~~~~d~~R~~~~~l~~~~~~~~~~~~~~~~f~~~~~ 434 (438)
|+|++|+++||.........++..|++|||++++.+. ..++++|+|+|.
T Consensus 392 ~sa~~p~~~Lf~~~~~~e~ls~s~r~~mddl~iks~~----~~~~~mf~g~EE 440 (467)
T KOG2383|consen 392 CSAATPLEELFQFTGHSEALSDSPRTLMDDLGIKSDS----AGGSPMFSGEEE 440 (467)
T ss_pred ecCCCCHHHHhcccCcccccccCcccchhhhcccccC----ccccccccchHH
Confidence 9999999999998887677889999999999999766 478889999985
No 2
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=100.00 E-value=2.7e-94 Score=735.05 Aligned_cols=349 Identities=45% Similarity=0.809 Sum_probs=321.6
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--Cccc-cccc--cCCCCCceEEEccCCCCHhHHHH
Q psy318 9 SLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSK--SMFS-FFQD--KVKQPKGLYIYGAVGGGKTMLMD 83 (438)
Q Consensus 9 ~~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~--~~~~-~~~~--~~~~pkGlyL~G~vG~GKT~Lmd 83 (438)
|+|+++|+++|++|.+..|+.|.+++++|++++++|..+.++.. +++. +|++ ..++|+||||||+||+|||||||
T Consensus 1 ~tp~~~y~~~~~~~~~~~D~~q~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GlYl~G~vG~GKT~Lmd 80 (362)
T PF03969_consen 1 TTPLERYQARVAQGELFPDPAQRQAIEHLDRLYQELQKYKPARQSKSRLRKLFGRKPPPPPPKGLYLWGPVGRGKTMLMD 80 (362)
T ss_pred CChHHHHHHHhcCCCCCCCHHHHHHHHhHHHHHHHHHhccccchhhHHHHHHhcCCccCCCCceEEEECCCCCchhHHHH
Confidence 68999999999999999999999999999999999998776543 2333 4443 35679999999999999999999
Q ss_pred HHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy318 84 IFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERERERERERERERERERERE 163 (438)
Q Consensus 84 ~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 163 (438)
+||+++++++|+|+|||+||.++|++||++++
T Consensus 81 ~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~------------------------------------------------ 112 (362)
T PF03969_consen 81 LFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRG------------------------------------------------ 112 (362)
T ss_pred HHHHhCCccccccccccHHHHHHHHHHHHHhC------------------------------------------------
Confidence 99999999999999999999999999998762
Q ss_pred ccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHH
Q psy318 164 AKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLK 243 (438)
Q Consensus 164 ~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~ 243 (438)
..||+..+|+++++++.|||||||+++|++|||+|.+||+.|+++|++||+|||++|++||+||++|+.|+|+|++|+
T Consensus 113 --~~~~l~~va~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~ 190 (362)
T PF03969_consen 113 --QDDPLPQVADELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLK 190 (362)
T ss_pred --CCccHHHHHHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccchhccccccccCCCceeecCch-hHHHHHHHHHHHHcCCCCCCccCceeccCCceEEeccccCcEEEe
Q psy318 244 TYCDVASLNSNIDYRSLKANAEESSTKTYFVKNF-ANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEA 322 (438)
Q Consensus 244 ~~~~vv~ld~g~DyR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~l~~~~~~~~~~~~l~v~gR~l~v~~~~~~va~f 322 (438)
++|+|++|++++|||+.... ....|++|.+ .+...++++|..++... +..+.+|+|.||+|.|+++++++|||
T Consensus 191 ~~~~vv~ld~~~DyR~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~v~gR~i~v~~~~~~va~F 264 (362)
T PF03969_consen 191 RRCDVVELDGGVDYRRRGAP----PAPVYFYPLDEEADAALERLFQRLTGGE--PEEPRTLEVGGREIPVPRACGGVAWF 264 (362)
T ss_pred hceEEEEecCCCchhhhccc----ccccccCcchHHHHHHHHHHHHHhcccc--CCCCceeEEeeeEEeeecccCCEEEe
Confidence 99999999999999998754 4568888877 77789999999998754 34677899999999999999999999
Q ss_pred eHHHHhcCCCChhhHHHHhhccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCCChhhhccccccCCCCC
Q psy318 323 TFDELCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHS 402 (438)
Q Consensus 323 ~F~eLC~~plg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~~~~~Lf~~~~~~~~~~ 402 (438)
+|+|||++|+|++||++||++|+||+|+|||+|+..++|+|||||+|||+|||++|+|+|+|++||++||.++.. ..
T Consensus 265 ~F~eLC~~plg~aDYlaLA~~F~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~v~L~~sa~~~~~~L~~~~~~---~~ 341 (362)
T PF03969_consen 265 DFDELCERPLGAADYLALAERFHTIFISDVPVLSESDRNEARRFITLIDVLYDRKVKLIISAAAPPDELFQGGRL---AF 341 (362)
T ss_pred cHHHhhccCCCHHHHHHHHHhCCEEEEcCCCCcccCChhHHHHHHHHHHHHhhCCCcEEEEcCCCHHHHHhCCCc---hh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988773 57
Q ss_pred hHHHHhHhhhcccc
Q psy318 403 DEHRMLMDDLNIKA 416 (438)
Q Consensus 403 d~~R~~~~~l~~~~ 416 (438)
++.|+++++..+..
T Consensus 342 ~f~RT~SRL~Em~~ 355 (362)
T PF03969_consen 342 EFQRTASRLSEMQS 355 (362)
T ss_pred hhhHHHHHHHHHhh
Confidence 99999999988764
No 3
>COG1485 Predicted ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-93 Score=714.14 Aligned_cols=349 Identities=38% Similarity=0.664 Sum_probs=323.2
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHH
Q psy318 8 SSLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 8 ~~~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.++|.++|.+++..|.+++|++|..++.+|++|++++.......+.+.++|++.+..|+|||||||||+|||||||+||+
T Consensus 8 ~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~ 87 (367)
T COG1485 8 TMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYE 87 (367)
T ss_pred CCCHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHh
Confidence 46999999999999999999999999999999999887654444433346766678899999999999999999999999
Q ss_pred hhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy318 88 SCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSY 167 (438)
Q Consensus 88 ~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 167 (438)
++|+++|+|+|||.||.++|++|+++++ ..
T Consensus 88 ~lp~~~k~R~HFh~FM~~vH~~l~~l~g--------------------------------------------------~~ 117 (367)
T COG1485 88 SLPGERKRRLHFHRFMARVHQRLHTLQG--------------------------------------------------QT 117 (367)
T ss_pred hCCccccccccHHHHHHHHHHHHHHHcC--------------------------------------------------CC
Confidence 9999999999999999999999998863 35
Q ss_pred CCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcc
Q psy318 168 DPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD 247 (438)
Q Consensus 168 d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~ 247 (438)
||++.+|++++.+++|||||||+++|++|||+|.+||+.|+++|+++|+|||++|++||+|||||++|+|+|++|+++|+
T Consensus 118 dpl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~ 197 (367)
T COG1485 118 DPLPPIADELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFE 197 (367)
T ss_pred CccHHHHHHHHhcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhccccccccCCCceeecCch-hHHHHHHHHHHHHcCCCCCCccCceeccCCceEEeccccCcEEEeeHHH
Q psy318 248 VASLNSNIDYRSLKANAEESSTKTYFVKNF-ANEKKLHGIFKLLCSQENDIVRPRVITIMGRNVTFNKTCGQILEATFDE 326 (438)
Q Consensus 248 vv~ld~g~DyR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~l~~~~~~~~~~~~l~v~gR~l~v~~~~~~va~f~F~e 326 (438)
|+++|+++|||++... ....|++|.+ ++++.|+++|..++... ...+.+|.|.||+|.|+..+++++||+|.+
T Consensus 198 v~~vD~~~DYR~r~l~----~a~~y~~Pl~~~~~~~l~~~~~~ls~~~--~~~~~~l~i~gR~i~~~~~~~~~~~f~f~~ 271 (367)
T COG1485 198 VVNVDGPVDYRLRKLE----QAPVYLTPLDAEAEAALDKLWAALSDGA--PEAAANLEIKGREIRVPAVAGGLLWFDFAQ 271 (367)
T ss_pred EEEecCCccccccccc----cCceeecCCcHHHHHHHHHHHHHhccCC--ccCCchhhccCceeecccccCcchhccHHH
Confidence 9999999999998875 4458999988 88899999999998743 245668999999999999999999999999
Q ss_pred HhcCCCChhhHHHHhhccCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCCChhhhccccccCCCCChHHH
Q psy318 327 LCSRDLGSSDYLHICQIFHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDVPLNKLFSNEAVIDTHSDEHR 406 (438)
Q Consensus 327 LC~~plg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~~~~~Lf~~~~~~~~~~d~~R 406 (438)
||+.|+|+.|||+||++||||+|+|||.|+...+|+|||||+|||+|||+++||++||++||++||.++.. ..++.|
T Consensus 272 Lc~~p~s~~DYl~l~~~f~tv~l~~vp~m~~~~~~~arRFI~lVD~lYD~~vkL~~Sae~~~~~Ly~~~~~---afeF~R 348 (367)
T COG1485 272 LCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRFIALVDELYDRGVKLVASAEVPLNELYQGGRL---AFEFQR 348 (367)
T ss_pred HhhCcCCHHHHHHHHhhccEEEEcCCCCCChhhhHHHHHHHHHHHHHHhcCCcEEEEccCCHHHhccCchh---hhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999885 468999
Q ss_pred HhHhhhccc
Q psy318 407 MLMDDLNIK 415 (438)
Q Consensus 407 ~~~~~l~~~ 415 (438)
++++...+.
T Consensus 349 t~SRL~EMq 357 (367)
T COG1485 349 TLSRLQEMQ 357 (367)
T ss_pred HHHHHHHHH
Confidence 999987664
No 4
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.79 E-value=1.9e-18 Score=173.76 Aligned_cols=139 Identities=18% Similarity=0.304 Sum_probs=105.6
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhc--ccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCET--KQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE 141 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~--~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (438)
.++||||||++|+||||||.++++.+.. .....+|+.+|+.++...+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~----------------------------- 205 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISD----------------------------- 205 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhc-----------------------------
Confidence 4689999999999999999999999952 223566788887777543211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC---hhhHHHHHHHHHHHHHCCCEEEEec
Q psy318 142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD---IADAMILKRLFTELFQLGVVVVATS 218 (438)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d---~~da~iL~~Lfn~l~~~g~~lV~TS 218 (438)
+.+....+. +.+++|||||||+... +....+|+.+++.++..+.++|+||
T Consensus 206 --------------------------~~~~~~l~~-l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TS 258 (306)
T PRK08939 206 --------------------------GSVKEKIDA-VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTS 258 (306)
T ss_pred --------------------------CcHHHHHHH-hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEEC
Confidence 011122333 5799999999999854 3333567888899988889999999
Q ss_pred CCChhhhhcC------C-CCcCCcccHHHHHHhhccccccccccchhc
Q psy318 219 NRAPDDLYKN------G-LQRSNFLPFIDVLKTYCDVASLNSNIDYRS 259 (438)
Q Consensus 219 N~~P~~L~~~------g-l~r~~F~p~I~~L~~~~~vv~ld~g~DyR~ 259 (438)
|.++++|... | .+.....++++||.++|++|.+. |.|||.
T Consensus 259 Nl~~~el~~~~~~~~~g~~e~~~a~ri~dRI~~~~~~i~l~-G~s~R~ 305 (306)
T PRK08939 259 NFDFDELEHHLAYTQRGEDETWKAARIMERIRYLAKEVHLE-GKNRRN 305 (306)
T ss_pred CCCHHHHHHHHhhhccCcchhhHHHHHHHHHHHhcEEEEee-cCCCCC
Confidence 9999999873 1 12334567999999999999999 899995
No 5
>PRK08181 transposase; Validated
Probab=99.76 E-value=8.8e-18 Score=166.11 Aligned_cols=144 Identities=18% Similarity=0.216 Sum_probs=106.6
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE 143 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
..++|||+||+|+|||||+.++.+.+. .++.++.|..... +...+......
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~~~~-L~~~l~~a~~~--------------------------- 155 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRTTD-LVQKLQVARRE--------------------------- 155 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeeeHHH-HHHHHHHHHhC---------------------------
Confidence 457899999999999999999998874 3456777766432 22233221110
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
..+..+.+ .+.+++||||||++... ..++..||+++|.+++. ..+|+|||.+
T Consensus 156 ------------------------~~~~~~l~-~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~ 209 (269)
T PRK08181 156 ------------------------LQLESAIA-KLDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQP 209 (269)
T ss_pred ------------------------CcHHHHHH-HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence 01112233 34689999999999864 45567899999999987 5899999999
Q ss_pred hhhhhcCCCCcCCcccHHHHHHhhccccccccccchhccccc
Q psy318 222 PDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKAN 263 (438)
Q Consensus 222 P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~~ 263 (438)
|.+|..---+.....+++|||.++|+++.+. |.|||++.+.
T Consensus 210 ~~~w~~~~~D~~~a~aildRL~h~~~~i~~~-g~s~R~~~~~ 250 (269)
T PRK08181 210 FGEWNRVFPDPAMTLAAVDRLVHHATIFEMN-VESYRRRTAL 250 (269)
T ss_pred HHHHHHhcCCccchhhHHHhhhcCceEEecC-CccchhHHHH
Confidence 9999985334445567899999999999999 8999987643
No 6
>PRK08116 hypothetical protein; Validated
Probab=99.75 E-value=3.1e-17 Score=161.94 Aligned_cols=166 Identities=19% Similarity=0.201 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHH
Q psy318 26 EDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLD 105 (438)
Q Consensus 26 ~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~ 105 (438)
.++.|..|+....++.+.... ....+.|+||||++|+|||||+.++++.+... ..++.|..+-..
T Consensus 89 ~~~~~~~a~~~a~~y~~~~~~--------------~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~~~l 153 (268)
T PRK08116 89 FDKGSEKAYKIARKYVKKFEE--------------MKKENVGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNFPQL 153 (268)
T ss_pred CChHHHHHHHHHHHHHHHHHh--------------hccCCceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHHH
Confidence 345565566555555444321 01234689999999999999999999998543 556666554222
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEE
Q psy318 106 VHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLIC 185 (438)
Q Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc 185 (438)
+. .+....... ....... ..+.+.+++||+
T Consensus 154 l~-~i~~~~~~~------------------------------------------------~~~~~~~-~~~~l~~~dlLv 183 (268)
T PRK08116 154 LN-RIKSTYKSS------------------------------------------------GKEDENE-IIRSLVNADLLI 183 (268)
T ss_pred HH-HHHHHHhcc------------------------------------------------ccccHHH-HHHHhcCCCEEE
Confidence 22 111110000 0000111 233456899999
Q ss_pred EecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318 186 FDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 186 ~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
|||++.... .....|++++|.++..|.++|+|||.+|++|... ++ .++++||.++|.+|.+. |.|||....
T Consensus 184 iDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~-~~----~ri~sRl~e~~~~v~~~-g~d~R~~~~ 256 (268)
T PRK08116 184 LDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQ-YG----KRIYDRILEMCTPVENE-GKSYRKEIA 256 (268)
T ss_pred EecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH-Hh----HHHHHHHHHcCEEEEee-CcChhHHHH
Confidence 999987532 2345699999999999999999999999999764 22 56889999999999999 899998764
No 7
>PRK12377 putative replication protein; Provisional
Probab=99.69 E-value=4.2e-16 Score=152.55 Aligned_cols=139 Identities=15% Similarity=0.106 Sum_probs=100.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
..++||||++|+|||||+.++.+.+.. +...+.|..+. ++...+.......
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~-~l~~~l~~~~~~~--------------------------- 151 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVP-DVMSRLHESYDNG--------------------------- 151 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHH-HHHHHHHHHHhcc---------------------------
Confidence 478999999999999999999999863 34556655443 2222222211100
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
..... .-+.+.+++|||||||+.. ....+.+|+.+++.++..+.++|+|||.++
T Consensus 152 -----------------------~~~~~-~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~ 207 (248)
T PRK12377 152 -----------------------QSGEK-FLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNH 207 (248)
T ss_pred -----------------------chHHH-HHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCH
Confidence 00011 2233578999999999875 334567899999999999999999999999
Q ss_pred hhhhcCCCCcCCcccHHHHHHhh-ccccccccccchhcccc
Q psy318 223 DDLYKNGLQRSNFLPFIDVLKTY-CDVASLNSNIDYRSLKA 262 (438)
Q Consensus 223 ~~L~~~gl~r~~F~p~I~~L~~~-~~vv~ld~g~DyR~~~~ 262 (438)
++|.+. +. .++++||.+. |.+|.++ |.|||+..+
T Consensus 208 ~~l~~~-~~----~ri~dRl~~~~~~~v~~~-g~s~R~~~~ 242 (248)
T PRK12377 208 EAMSTL-LG----ERVMDRMTMNGGRWVNFN-WESWRPNVS 242 (248)
T ss_pred HHHHHH-hh----HHHHHHHhhCCCeEEEeC-CcCcccccc
Confidence 999863 22 4689999875 7899999 899998764
No 8
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.69 E-value=3.8e-16 Score=153.21 Aligned_cols=142 Identities=18% Similarity=0.142 Sum_probs=108.0
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh---hhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK---FMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~---fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
.++|+||||++|+|||||+-|+.+.+. +++.++-|.. +|.++......
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~---------------------------- 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDE---------------------------- 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHhc----------------------------
Confidence 578999999999999999999999997 6667777754 44444322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEec
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATS 218 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TS 218 (438)
.....-..+.+.+++||+|||++... ...+..+++++..+++.... ++||
T Consensus 155 ---------------------------~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~ts 206 (254)
T COG1484 155 ---------------------------GRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITS 206 (254)
T ss_pred ---------------------------CchHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeec
Confidence 00111134446799999999999953 33467788999999988766 9999
Q ss_pred CCChhhhhcCCCCcCCcccHHHHHHhhccccccccccchhccccc
Q psy318 219 NRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKAN 263 (438)
Q Consensus 219 N~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~~ 263 (438)
|.++.+|....-....-.+.+++|.++|+++.+. |.+||+....
T Consensus 207 N~~~~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~-g~s~rl~~~~ 250 (254)
T COG1484 207 NLSFGEWDELFGDDALTEALLDRILHHSHVIVIK-GESYRLNVRR 250 (254)
T ss_pred CCChHHHHhhccCchhHHHHHHHHHhcceeeEec-chHhhhhccc
Confidence 9999999985333335578999999999999987 8999987654
No 9
>PRK06526 transposase; Provisional
Probab=99.69 E-value=1.6e-16 Score=155.98 Aligned_cols=143 Identities=19% Similarity=0.140 Sum_probs=105.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE 143 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
.+++|+|+||+|+|||||+.++...+. ..+.++.|...-..+ +.+......
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f~t~~~l~-~~l~~~~~~--------------------------- 147 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFATAAQWV-ARLAAAHHA--------------------------- 147 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhhhhHHHHH-HHHHHHHhc---------------------------
Confidence 467999999999999999999988774 346678885543322 222111100
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
..+....+. +.++++|+|||++... ...+.+|+.+++..++++ .+|+|||.+
T Consensus 148 ------------------------~~~~~~l~~-l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 148 ------------------------GRLQAELVK-LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred ------------------------CcHHHHHHH-hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 001112233 3578999999999864 455668999999999875 699999999
Q ss_pred hhhhhcCCCCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318 222 PDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 222 P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
|.+|+..--++....++++||.++|++|.+. |.|||.+.+
T Consensus 202 ~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~-g~s~R~~~~ 241 (254)
T PRK06526 202 FGRWGEVFGDDVVAAAMIDRLVHHAEVISLK-GDSYRLKDR 241 (254)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCceEEeec-CCCcchhhh
Confidence 9999985334445567899999999999999 899998765
No 10
>PRK09183 transposase/IS protein; Provisional
Probab=99.65 E-value=7.3e-16 Score=151.46 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=103.2
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK 142 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (438)
....+++|+||+|+|||||+.++...+.. ...++.|-..- ++...+......
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~~-~l~~~l~~a~~~-------------------------- 151 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTAA-DLLLQLSTAQRQ-------------------------- 151 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeHH-HHHHHHHHHHHC--------------------------
Confidence 34578999999999999999999877642 34566664321 111111111100
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 143 EREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
..+..+.+..+..+++|||||++.. +..++..||.+++.+++++ .+|+|||.
T Consensus 152 -------------------------~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 152 -------------------------GRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred -------------------------CcHHHHHHHHhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 0112234444567899999999985 3445568999999999886 58999999
Q ss_pred ChhhhhcCC-CCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318 221 APDDLYKNG-LQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 221 ~P~~L~~~g-l~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
+|.+|+..- -+.....++++||.++|++|.++ |.|||++..
T Consensus 206 ~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~-g~s~R~~~~ 247 (259)
T PRK09183 206 PFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIK-GESYRLKQK 247 (259)
T ss_pred CHHHHHHHhcCchhHHHHHHHHHhcceEEEeec-CCCCccccc
Confidence 999999862 23334567999999999999999 899998764
No 11
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.65 E-value=1.8e-16 Score=147.59 Aligned_cols=131 Identities=19% Similarity=0.233 Sum_probs=72.7
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE 143 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
.++||||+|++|+|||||+.++...+-. ++..+-|-.+...+ ..+.....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~-~~l~~~~~---------------------------- 95 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLL-DELKQSRS---------------------------- 95 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHH-HHHHCCHC----------------------------
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCcee-cccccccc----------------------------
Confidence 4689999999999999999999988743 45566665543322 22221110
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+......+. +.+++||+||||+.... .....||.+++.++++ .++|+|||.+
T Consensus 96 -----------------------~~~~~~~~~~-l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~-~~tIiTSN~~ 150 (178)
T PF01695_consen 96 -----------------------DGSYEELLKR-LKRVDLLILDDLGYEPLSEWEAELLFEIIDERYER-KPTIITSNLS 150 (178)
T ss_dssp -----------------------CTTHCHHHHH-HHTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred -----------------------ccchhhhcCc-cccccEecccccceeeecccccccchhhhhHhhcc-cCeEeeCCCc
Confidence 0011122333 45899999999999643 3345799999999986 4899999999
Q ss_pred hhhhhcCCCCcCCcccHHHHHHhhcccc
Q psy318 222 PDDLYKNGLQRSNFLPFIDVLKTYCDVA 249 (438)
Q Consensus 222 P~~L~~~gl~r~~F~p~I~~L~~~~~vv 249 (438)
|++|.+.--++....++++||.++|++|
T Consensus 151 ~~~l~~~~~d~~~a~aildRl~~~~~~i 178 (178)
T PF01695_consen 151 PSELEEVLGDRALAEAILDRLLHHCHVI 178 (178)
T ss_dssp HHHHHT----------------------
T ss_pred hhhHhhccccccccccccccccccccCC
Confidence 9999986556777889999999999986
No 12
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.65 E-value=2.3e-15 Score=152.92 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=103.9
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
.+||||||++|+|||||+.++.+.+.. +..+|.|...-. +...+...+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~~-l~~~l~~~~~~~--------------------------- 233 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLD-RGKSVIYRTADE-LIEILREIRFNN--------------------------- 233 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHHH-HHHHHHHHHhcc---------------------------
Confidence 389999999999999999999998853 456788866533 333333221110
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
..+ .... -+.+.++|||||||++... ..+...||.++|.++..+.++|+|||.+|
T Consensus 234 ---------------------~~~-~~~~-~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~ 290 (329)
T PRK06835 234 ---------------------DKE-LEEV-YDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSL 290 (329)
T ss_pred ---------------------chh-HHHH-HHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCH
Confidence 000 0011 2445689999999999853 44456799999999999999999999999
Q ss_pred hhhhcCCCCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318 223 DDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 223 ~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
++|... +. .++.+||.++|.+|.+. |.|+|...+
T Consensus 291 ~el~~~-~~----eri~SRL~~~~~~i~~~-G~d~R~~~~ 324 (329)
T PRK06835 291 EELLKT-YS----ERISSRLLGNFTLLKFY-GEDIRIKKN 324 (329)
T ss_pred HHHHHH-Hh----HHHHHHHHcCCEEEEec-CcChhhHHH
Confidence 999753 21 35789999999999998 899998654
No 13
>PRK06921 hypothetical protein; Provisional
Probab=99.61 E-value=7.6e-15 Score=144.92 Aligned_cols=137 Identities=11% Similarity=0.141 Sum_probs=94.0
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE 143 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
..++|||||++|+|||||+.++.+.+.......+-|-.+...+. .+......
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~-~l~~~~~~--------------------------- 167 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG-DLKDDFDL--------------------------- 167 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH-HHHHHHHH---------------------------
Confidence 35789999999999999999999988543234555544322221 11111000
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCC-----C--ChhhHHHHHHHHHHHHHCCCEEEE
Q psy318 144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQV-----T--DIADAMILKRLFTELFQLGVVVVA 216 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v-----~--d~~da~iL~~Lfn~l~~~g~~lV~ 216 (438)
+.. ..+.+.+++||||||++. . ..-....||.++|.++..+.++|+
T Consensus 168 --------------------------~~~-~~~~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIi 220 (266)
T PRK06921 168 --------------------------LEA-KLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILI 220 (266)
T ss_pred --------------------------HHH-HHHHhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 000 123356899999999954 1 122245799999999999899999
Q ss_pred ecCCChhhhhcCCCCcCCcccHHHHHHhhcc--ccccccccchhcccc
Q psy318 217 TSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD--VASLNSNIDYRSLKA 262 (438)
Q Consensus 217 TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~--vv~ld~g~DyR~~~~ 262 (438)
|||.+|.+|..- + .++.+||.++|. ++.++ |.+||+..+
T Consensus 221 tsn~~~~el~~~--~----~~l~sRi~~r~~~~~i~~~-g~s~r~~~r 261 (266)
T PRK06921 221 SSELTIDELLDI--D----EALGSRIVEMCKDYLVIIK-GDSFELNHR 261 (266)
T ss_pred ECCCCHHHHhhh--h----hHHHHHHHHhccCeEEEec-Ccccccchh
Confidence 999999999863 2 356677777665 78887 787887654
No 14
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.60 E-value=1.8e-14 Score=140.82 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=99.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE 145 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (438)
+|+||+|++|+|||||+.++.+.+.. .+.++.|... .++...+.......
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it~-~~l~~~l~~~~~~~---------------------------- 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITV-ADIMSAMKDTFSNS---------------------------- 149 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEH-HHHHHHHHHHHhhc----------------------------
Confidence 59999999999999999999999853 3456666543 22222222110000
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhh--HHHHHHHHHHHHHCCCEEEEecCCChh
Q psy318 146 REREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIAD--AMILKRLFTELFQLGVVVVATSNRAPD 223 (438)
Q Consensus 146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~d--a~iL~~Lfn~l~~~g~~lV~TSN~~P~ 223 (438)
......+.+. +.++++|||||++.....+ ..+|+.+++.++....++|+|||.+|+
T Consensus 150 ---------------------~~~~~~~l~~-l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 150 ---------------------ETSEEQLLND-LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred ---------------------cccHHHHHHH-hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 0001123333 4589999999999865332 457999999999988999999999999
Q ss_pred hhhcCCCCcCCcccHHHHHH-hhccccccccccchhccc
Q psy318 224 DLYKNGLQRSNFLPFIDVLK-TYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 224 ~L~~~gl~r~~F~p~I~~L~-~~~~vv~ld~g~DyR~~~ 261 (438)
+|... +. .++++||. +++.+|.++ +.|||...
T Consensus 208 ~l~~~-~g----~ri~sRl~~~~~~~i~f~-~~s~R~~~ 240 (244)
T PRK07952 208 EMTKL-LG----ERVMDRMRLGNSLWVIFN-WDSYRSRV 240 (244)
T ss_pred HHHHH-hC----hHHHHHHHHCCceEEEee-CCcccccc
Confidence 99863 32 35789996 789999999 89999765
No 15
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.57 E-value=1.3e-14 Score=139.18 Aligned_cols=124 Identities=24% Similarity=0.346 Sum_probs=86.8
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhc-ccceeeec---hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCET-KQKQRVHF---NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE 141 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~-~~k~R~Hf---~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (438)
+++||||++|+|||||+.++++.+.. ..+.|+.| .+|+.++...+.. .
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~---~------------------------- 86 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD---G------------------------- 86 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT---T-------------------------
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc---c-------------------------
Confidence 57999999999999999999998842 23456666 4566665543322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecC
Q psy318 142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSN 219 (438)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN 219 (438)
.+.. .++.++.+++|||||+|.+.. .++..|+++||.+.++|+++|+||+
T Consensus 87 ---------------------------~~~~-~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 87 ---------------------------EIEE-FKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp ---------------------------SHHH-HHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred ---------------------------cchh-hhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 1111 445567999999999999754 4478899999999999999999999
Q ss_pred CChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 220 RAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 220 ~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
.+|.+|.. +. ..+++||.. +-++.+.
T Consensus 139 ~~P~~l~~--~~----~~L~SRl~~-Gl~~~l~ 164 (219)
T PF00308_consen 139 RPPSELSG--LL----PDLRSRLSW-GLVVELQ 164 (219)
T ss_dssp S-TTTTTT--S-----HHHHHHHHC-SEEEEE-
T ss_pred CCCccccc--cC----hhhhhhHhh-cchhhcC
Confidence 99999873 32 124555533 3345554
No 16
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.55 E-value=2.1e-14 Score=148.93 Aligned_cols=135 Identities=20% Similarity=0.181 Sum_probs=98.7
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh-hcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC-ETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK 142 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l-~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (438)
.-+.||||||+|+||||||.++.+.+ ....+.|+.|-+--..+.+.+.+.+...+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~------------------------ 167 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEM------------------------ 167 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhH------------------------
Confidence 35789999999999999999999988 34455678886655555554544443210
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 143 EREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.-.++.+ ++++|||||+|.... .+++.+|++||.+.+.|+.||+||.+
T Consensus 168 -----------------------------~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 168 -----------------------------EKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred -----------------------------HHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 1267778 999999999999654 45889999999999999999999999
Q ss_pred ChhhhhcCCCCcCCcccHHHHHHhhccccccccccchhcc
Q psy318 221 APDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDYRSL 260 (438)
Q Consensus 221 ~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~ 260 (438)
+|.+|..- . .++.+|+.. +.++.+. +.|+..+
T Consensus 218 ~P~~l~~~--~----~rL~SR~~~-Gl~~~I~-~Pd~e~r 249 (408)
T COG0593 218 PPKELNGL--E----DRLRSRLEW-GLVVEIE-PPDDETR 249 (408)
T ss_pred Cchhhccc--c----HHHHHHHhc-eeEEeeC-CCCHHHH
Confidence 99999842 1 123344433 2567777 5666544
No 17
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.49 E-value=3.3e-13 Score=130.59 Aligned_cols=114 Identities=17% Similarity=0.317 Sum_probs=83.4
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE 145 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (438)
..+|||||+|+|||||+.++.+.+.. ...++.|..+-.... ..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~~~~--------~~---------------------------- 88 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDKRAW--------FV---------------------------- 88 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHHHhh--------hh----------------------------
Confidence 57999999999999999999988753 356777766632110 00
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCC-EEEEecCCCh
Q psy318 146 REREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGV-VVVATSNRAP 222 (438)
Q Consensus 146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~-~lV~TSN~~P 222 (438)
.. +.+.+.++++|||||+|.. +..++..||++||.+++.|. .+|+|||.||
T Consensus 89 -------------------------~~-~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 89 -------------------------PE-VLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred -------------------------HH-HHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 00 1222346799999999986 45678889999999999885 7999999999
Q ss_pred hhhhcCCCCcCCcccHHHHHHhhc---cccccc
Q psy318 223 DDLYKNGLQRSNFLPFIDVLKTYC---DVASLN 252 (438)
Q Consensus 223 ~~L~~~gl~r~~F~p~I~~L~~~~---~vv~ld 252 (438)
.+|..- ...|+.+| .++.+.
T Consensus 143 ~~l~~~----------~~~L~SRl~~g~~~~l~ 165 (235)
T PRK08084 143 RQLNLG----------LPDLASRLDWGQIYKLQ 165 (235)
T ss_pred HHcCcc----------cHHHHHHHhCCceeeec
Confidence 998742 23455566 566666
No 18
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=3.9e-13 Score=141.90 Aligned_cols=108 Identities=20% Similarity=0.285 Sum_probs=78.8
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhc-ccceeeechh---hhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCET-KQKQRVHFNK---FMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~-~~k~R~Hf~~---fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
.+++||||++|+||||||.++.+.+.. ..+.++.|-. |+.++...+ ....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l---~~~~----------------------- 194 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL---QKTH----------------------- 194 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH---HHhh-----------------------
Confidence 468999999999999999999998742 3345666644 443333222 1100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEec
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATS 218 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TS 218 (438)
+.+ .-+.+.+.++++|||||+|... ...+..||.+||.+++.|.++|+||
T Consensus 195 ---------------------------~~~-~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIlts 246 (450)
T PRK14087 195 ---------------------------KEI-EQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSS 246 (450)
T ss_pred ---------------------------hHH-HHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEEC
Confidence 000 1144456789999999999875 4456789999999999999999999
Q ss_pred CCChhhhh
Q psy318 219 NRAPDDLY 226 (438)
Q Consensus 219 N~~P~~L~ 226 (438)
|.+|.+|.
T Consensus 247 d~~P~~l~ 254 (450)
T PRK14087 247 DKSPELLN 254 (450)
T ss_pred CCCHHHHh
Confidence 99998884
No 19
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=3.9e-13 Score=145.56 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=78.9
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhc-ccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCET-KQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~-~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
++|||||++|+|||||+.++.+.+.. ....++.|-..-..+.+.+...+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~--------------------------- 367 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGK--------------------------- 367 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhcc---------------------------
Confidence 56999999999999999999998842 23456666554333322222221110
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
+ ...++.+.++++||||||+.+. ..++..||++||.+++.|+.||+|||++|
T Consensus 368 -------------------------~-~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 368 -------------------------G-DSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred -------------------------H-HHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 0 1144556789999999999974 34567899999999999999999999999
Q ss_pred hhhh
Q psy318 223 DDLY 226 (438)
Q Consensus 223 ~~L~ 226 (438)
.+|.
T Consensus 422 ~eL~ 425 (617)
T PRK14086 422 KQLV 425 (617)
T ss_pred Hhhh
Confidence 9986
No 20
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.1e-13 Score=134.82 Aligned_cols=146 Identities=25% Similarity=0.345 Sum_probs=104.0
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
...+||||+||||||||||+|+.|.++..... =.|+-=.+|+ +++-+..++
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-FIrvvgSElV-------qKYiGEGaR--------------------- 231 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-FIRVVGSELV-------QKYIGEGAR--------------------- 231 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCce-EEEeccHHHH-------HHHhccchH---------------------
Confidence 46789999999999999999999999987432 2333333322 222221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC-----C---hhh---HHHHHHHHHHHH-
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT-----D---IAD---AMILKRLFTELF- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~-----d---~~d---a~iL~~Lfn~l~- 208 (438)
=.|. +..+|++ +.+++++|||++.+ | .+| +..+..|+|+|-
T Consensus 232 -----------------lVRe--------lF~lAre--kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 232 -----------------LVRE--------LFELARE--KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred -----------------HHHH--------HHHHHhh--cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 0011 3456776 57999999999974 2 233 345667777773
Q ss_pred --HC-CCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhcccc
Q psy318 209 --QL-GVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 209 --~~-g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
.+ .+.||+++|++ |+-|.+++++|..-.| ...+|+-|+..+++..++||.....
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~ 351 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR 351 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence 22 36899999996 9999999999987666 4679999999999998999997654
No 21
>PRK08727 hypothetical protein; Validated
Probab=99.44 E-value=9.4e-13 Score=127.25 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=74.3
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE 145 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (438)
+.+||||++|+|||||+.++.+.+... ..++.|-.+ .+....+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~~-~~~~~~~----------------------------------- 84 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLPL-QAAAGRL----------------------------------- 84 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEeH-HHhhhhH-----------------------------------
Confidence 569999999999999999999887533 456666542 1111000
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCChh
Q psy318 146 REREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAPD 223 (438)
Q Consensus 146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~ 223 (438)
.. +-+.+.++++||||||+... ..++..+|+++|.+++.|+.+|+|||.+|.
T Consensus 85 -------------------------~~-~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 85 -------------------------RD-ALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPD 138 (233)
T ss_pred -------------------------HH-HHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChh
Confidence 01 11234678999999999863 566788999999999999899999999999
Q ss_pred hhhc
Q psy318 224 DLYK 227 (438)
Q Consensus 224 ~L~~ 227 (438)
+|..
T Consensus 139 ~l~~ 142 (233)
T PRK08727 139 GLAL 142 (233)
T ss_pred hhhh
Confidence 9974
No 22
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=6.6e-13 Score=128.46 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=75.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
..++||||++|+|||||+.++.+.+.. +..++.|-..-. +.... .
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~-~~~~v~y~~~~~-~~~~~-----~---------------------------- 89 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ-RGEPAVYLPLAE-LLDRG-----P---------------------------- 89 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEeeHHH-HHhhh-----H----------------------------
Confidence 368999999999999999999887743 245666655422 11100 0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
-..+.+.++++|||||++... ..++..||++||.+++.|+++|+|||.+|
T Consensus 90 ----------------------------~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 90 ----------------------------ELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred ----------------------------HHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 022334678999999999864 45678899999999999999999999999
Q ss_pred hhhhc
Q psy318 223 DDLYK 227 (438)
Q Consensus 223 ~~L~~ 227 (438)
.+|..
T Consensus 142 ~~l~~ 146 (234)
T PRK05642 142 RELPI 146 (234)
T ss_pred HHcCc
Confidence 98864
No 23
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=1.1e-12 Score=138.29 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=77.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
.+++||||++|+|||||+.++.+.+... ..++.|-..-......+..++...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~~~~f~~~~~~~l~~~~--------------------------- 192 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVRSELFTEHLVSAIRSGE--------------------------- 192 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEeeHHHHHHHHHHHHhcch---------------------------
Confidence 3689999999999999999999988532 345555433222221111111100
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
....++.+.++++|+|||+|.... ..+..|+.+||.+++.|.++|+|||.+|
T Consensus 193 --------------------------~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p 246 (445)
T PRK12422 193 --------------------------MQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP 246 (445)
T ss_pred --------------------------HHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence 112455567899999999999743 4567899999999999999999999999
Q ss_pred hhhh
Q psy318 223 DDLY 226 (438)
Q Consensus 223 ~~L~ 226 (438)
.+|.
T Consensus 247 ~~l~ 250 (445)
T PRK12422 247 QDLK 250 (445)
T ss_pred HHHh
Confidence 9986
No 24
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=1.6e-12 Score=136.83 Aligned_cols=108 Identities=27% Similarity=0.349 Sum_probs=76.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeec---hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHF---NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf---~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
.+++||||++|+||||||.++++.+... ...++.| ++|+.++...+.. .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~---~------------------------ 182 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKE---G------------------------ 182 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhc---c------------------------
Confidence 4679999999999999999999988432 2345665 5555555433211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEec
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATS 218 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TS 218 (438)
.+.........++++|||||++..- ...+..|+++|+.+++.|..+|+||
T Consensus 183 ----------------------------~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIits 234 (440)
T PRK14088 183 ----------------------------KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICS 234 (440)
T ss_pred ----------------------------cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence 0111122222369999999999752 2334679999999999999999999
Q ss_pred CCChhhhhc
Q psy318 219 NRAPDDLYK 227 (438)
Q Consensus 219 N~~P~~L~~ 227 (438)
|.+|.+|..
T Consensus 235 d~~p~~l~~ 243 (440)
T PRK14088 235 DREPQKLSE 243 (440)
T ss_pred CCCHHHHHH
Confidence 999998853
No 25
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.37 E-value=2.3e-12 Score=135.69 Aligned_cols=107 Identities=24% Similarity=0.327 Sum_probs=77.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeec---hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHF---NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf---~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
.+++||||++|+|||||+.++.+.+... ...++.| .+|+.++...+ +..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~---~~~------------------------ 200 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNAL---RNN------------------------ 200 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH---HcC------------------------
Confidence 3679999999999999999999998422 1345555 44444443222 110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEec
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATS 218 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TS 218 (438)
.+.. ..+.+.++++|||||+|.... ..+..|+++||.+++.|..+|+||
T Consensus 201 ----------------------------~~~~-~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits 251 (450)
T PRK00149 201 ----------------------------TMEE-FKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTS 251 (450)
T ss_pred ----------------------------cHHH-HHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEEC
Confidence 0111 334456899999999998643 345679999999999999999999
Q ss_pred CCChhhhhc
Q psy318 219 NRAPDDLYK 227 (438)
Q Consensus 219 N~~P~~L~~ 227 (438)
|.+|.+|..
T Consensus 252 ~~~p~~l~~ 260 (450)
T PRK00149 252 DRPPKELPG 260 (450)
T ss_pred CCCHHHHHH
Confidence 999999863
No 26
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.36 E-value=3.2e-12 Score=132.61 Aligned_cols=110 Identities=21% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE 143 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
..++||||++|+|||||+.++++.+... .+.++.|-.......+.+......
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~--------------------------- 188 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNN--------------------------- 188 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcC---------------------------
Confidence 4689999999999999999999988432 135555544322222111111100
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+.. ..+.+.++++|+|||+|.... ..+..|+++|+.+++.|.++|+|||.+
T Consensus 189 -------------------------~~~~-~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 189 -------------------------KMEE-FKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRP 242 (405)
T ss_pred -------------------------CHHH-HHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 0111 334456799999999998643 345679999999999999999999999
Q ss_pred hhhhhc
Q psy318 222 PDDLYK 227 (438)
Q Consensus 222 P~~L~~ 227 (438)
|.+|..
T Consensus 243 p~~l~~ 248 (405)
T TIGR00362 243 PKELPG 248 (405)
T ss_pred HHHHhh
Confidence 999874
No 27
>PRK06893 DNA replication initiation factor; Validated
Probab=99.33 E-value=5.3e-12 Score=121.62 Aligned_cols=98 Identities=16% Similarity=0.314 Sum_probs=70.7
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERER 146 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (438)
.+|||||+|+|||||+.++.+.+... ..++.|-.+.. .....
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~--------~~~~~----------------------------- 82 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSK--------SQYFS----------------------------- 82 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHH--------hhhhh-----------------------------
Confidence 58999999999999999999987433 34555544310 00000
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHHHHHHHHHHHHCCCE-EEEecCCChh
Q psy318 147 EREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMILKRLFTELFQLGVV-VVATSNRAPD 223 (438)
Q Consensus 147 ~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~iL~~Lfn~l~~~g~~-lV~TSN~~P~ 223 (438)
.. ..+.+.++++|||||++.. +..++..|+++||.+.+.|.. +|+|||.+|.
T Consensus 83 ------------------------~~-~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 83 ------------------------PA-VLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ------------------------HH-HHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 00 1122457899999999985 456677899999999998764 5789999999
Q ss_pred hhhc
Q psy318 224 DLYK 227 (438)
Q Consensus 224 ~L~~ 227 (438)
+|..
T Consensus 138 ~l~~ 141 (229)
T PRK06893 138 ALSI 141 (229)
T ss_pred Hccc
Confidence 9873
No 28
>PRK06620 hypothetical protein; Validated
Probab=99.27 E-value=1.9e-11 Score=117.14 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=37.9
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDL 225 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L 225 (438)
+..++||+||+|.. +...|+++||.+.+.|..+|+||+.+|..+
T Consensus 84 ~~~d~lliDdi~~~---~~~~lf~l~N~~~e~g~~ilits~~~p~~l 127 (214)
T PRK06620 84 EKYNAFIIEDIENW---QEPALLHIFNIINEKQKYLLLTSSDKSRNF 127 (214)
T ss_pred hcCCEEEEeccccc---hHHHHHHHHHHHHhcCCEEEEEcCCCcccc
Confidence 46799999999954 235799999999999999999999999854
No 29
>KOG0734|consensus
Probab=99.26 E-value=3.2e-11 Score=127.24 Aligned_cols=168 Identities=20% Similarity=0.311 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHH
Q psy318 32 QIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIH 111 (438)
Q Consensus 32 ~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~ 111 (438)
+|.++|+++.+=|++ |. .+-+ + ....||||+|.||||+|||||+.+++-...++ .||.-=.++.+-+-
T Consensus 311 EAK~ELeEiVefLkd--P~--kftr-L--GGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-----FF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 311 EAKQELEEIVEFLKD--PT--KFTR-L--GGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-----FFYASGSEFDEMFV 378 (752)
T ss_pred HHHHHHHHHHHHhcC--cH--Hhhh-c--cCcCCCceEEeCCCCCchhHHHHHhhcccCCC-----eEeccccchhhhhh
Confidence 677788887777754 21 1111 1 34679999999999999999999998887666 44332222221100
Q ss_pred HHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCC
Q psy318 112 EVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQV 191 (438)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v 191 (438)
+.- ++|.|. +...|+. +.+++++|||++.
T Consensus 379 ---GvG--------------------------------------ArRVRd--------LF~aAk~--~APcIIFIDEiDa 407 (752)
T KOG0734|consen 379 ---GVG--------------------------------------ARRVRD--------LFAAAKA--RAPCIIFIDEIDA 407 (752)
T ss_pred ---ccc--------------------------------------HHHHHH--------HHHHHHh--cCCeEEEEechhh
Confidence 000 112222 2233444 6799999999998
Q ss_pred CC----hhhHHHHHHHHHHHH--------HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhcccc
Q psy318 192 TD----IADAMILKRLFTELF--------QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVA 249 (438)
Q Consensus 192 ~d----~~da~iL~~Lfn~l~--------~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv 249 (438)
+. ..++....+.+|+|+ ..|+++|.++|+| |+-+.+++|+|+...| ..++|+.+...|
T Consensus 408 vG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 408 VGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred hcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 53 233334555566654 4688889999995 4444568888887666 578999999999
Q ss_pred ccccccchhcccc
Q psy318 250 SLNSNIDYRSLKA 262 (438)
Q Consensus 250 ~ld~g~DyR~~~~ 262 (438)
.++.++|--...+
T Consensus 488 ~~~~~VD~~iiAR 500 (752)
T KOG0734|consen 488 PLDEDVDPKIIAR 500 (752)
T ss_pred CcccCCCHhHhcc
Confidence 9998999876654
No 30
>KOG0733|consensus
Probab=99.24 E-value=3.2e-11 Score=128.79 Aligned_cols=142 Identities=24% Similarity=0.387 Sum_probs=95.1
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHH--HHHHHHHHHhhhcccCCCCCCCCCccccchH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVH--AKIHEVKKILARDKAKSYDPGVPNRLDVMKE 138 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (438)
...+|+||+||||||||||||++++...+.++ | ..|. +.+... ...
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vP---------f-~~isApeivSGv----------------------SGE 266 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVP---------F-LSISAPEIVSGV----------------------SGE 266 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCCc---------e-Eeecchhhhccc----------------------Ccc
Confidence 56789999999999999999999999999765 1 1111 111100 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh-hcCCeEEEecCCCCChhh-----H---HHHHHHHHHHHH
Q psy318 139 EEEKEREREREREREREREREREREAKSYDPIPPVANDII-SKTWLICFDEFQVTDIAD-----A---MILKRLFTELFQ 209 (438)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~-~~~~lLc~DEf~v~d~~d-----a---~iL~~Lfn~l~~ 209 (438)
.+|+.+ .++++-. ..+++++||||+.+.+.. . .++.+|++.|-+
T Consensus 267 SEkkiR---------------------------elF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~ 319 (802)
T KOG0733|consen 267 SEKKIR---------------------------ELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDE 319 (802)
T ss_pred cHHHHH---------------------------HHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhc
Confidence 122222 2232222 347999999999975422 2 367777777642
Q ss_pred --------CCCEEEEecCCChhhhhc-----CCCCcCCccc------HHHHHHhhccccccccccchhcccc
Q psy318 210 --------LGVVVVATSNRAPDDLYK-----NGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 210 --------~g~~lV~TSN~~P~~L~~-----~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
.++.||.|+|+| +.|.+ ++|+|++-+. .-++|+..|.-+.+++..||++...
T Consensus 320 l~~~~~~g~~VlVIgATnRP-DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~ 390 (802)
T KOG0733|consen 320 LSNEKTKGDPVLVIGATNRP-DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAK 390 (802)
T ss_pred ccccccCCCCeEEEecCCCC-cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHh
Confidence 345678899995 66654 6778876543 4579999999999999999998653
No 31
>KOG0727|consensus
Probab=99.24 E-value=1.6e-11 Score=119.90 Aligned_cols=129 Identities=29% Similarity=0.366 Sum_probs=88.0
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
...+|+|++||||||||||||+.+..++... .-.|+-=.+|+... -+..++ |
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~a-~firvvgsefvqky-------lgegpr----------------m---- 236 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-AFIRVVGSEFVQKY-------LGEGPR----------------M---- 236 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccch-heeeeccHHHHHHH-------hccCcH----------------H----
Confidence 3578999999999999999999999987642 23555555553322 111100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH-
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFTELF- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~- 208 (438)
.| | +..+|++ ..+.+++|||++.+. .+| +.+|..|+|.+-
T Consensus 237 ------------------vr-------d-vfrlake--napsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 237 ------------------VR-------D-VFRLAKE--NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred ------------------HH-------H-HHHHHhc--cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 00 0 2344555 558999999999742 222 567888888873
Q ss_pred -HC--CCEEEEecCCC----hhhhhcCCCCcCCcccHHHHHHhh
Q psy318 209 -QL--GVVVVATSNRA----PDDLYKNGLQRSNFLPFIDVLKTY 245 (438)
Q Consensus 209 -~~--g~~lV~TSN~~----P~~L~~~gl~r~~F~p~I~~L~~~ 245 (438)
+. ++.+|+++|++ |+-|.+++|+|..-.|.-++-+.+
T Consensus 289 fdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkr 332 (408)
T KOG0727|consen 289 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 332 (408)
T ss_pred cCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhh
Confidence 33 46799999995 999999999999887766654444
No 32
>KOG0733|consensus
Probab=99.23 E-value=3.5e-11 Score=128.48 Aligned_cols=147 Identities=24% Similarity=0.366 Sum_probs=98.7
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
...+|.|++||||||||||.|+.+.++..-.. -+|- .--+.|.++-+..
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag~N---FisV-----KGPELlNkYVGES----------------------- 589 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN---FISV-----KGPELLNKYVGES----------------------- 589 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhccCc---eEee-----cCHHHHHHHhhhH-----------------------
Confidence 45789999999999999999999999876321 0110 0012333333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhhHHHHHHHHHHHH----
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IADAMILKRLFTELF---- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~da~iL~~Lfn~l~---- 208 (438)
+ | ..|. ...+.....++|++||||+.+. .....++.+|+..|-
T Consensus 590 ----E------r-----AVR~----------vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~ 644 (802)
T KOG0733|consen 590 ----E------R-----AVRQ----------VFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE 644 (802)
T ss_pred ----H------H-----HHHH----------HHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc
Confidence 0 0 0011 1133445679999999999853 223445556655553
Q ss_pred HCCCEEEEecCCC----hhhhhcCCCCcCCcccH------HHHHHhhcc--ccccccccchhccccc
Q psy318 209 QLGVVVVATSNRA----PDDLYKNGLQRSNFLPF------IDVLKTYCD--VASLNSNIDYRSLKAN 263 (438)
Q Consensus 209 ~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~------I~~L~~~~~--vv~ld~g~DyR~~~~~ 263 (438)
..|+.||+++|+| |+-|.+++|++-.|..+ .++|+.+.. -..+++.+|+--..+.
T Consensus 645 R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 645 RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 4577899999997 99999999999999764 678888777 7778878888766543
No 33
>PRK09087 hypothetical protein; Validated
Probab=99.18 E-value=1e-10 Score=112.97 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=40.1
Q ss_pred CeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 182 WLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 182 ~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
++||+||++... .++..||++||.+++.|+.+|+||+.+|.+|..
T Consensus 89 ~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~ 133 (226)
T PRK09087 89 GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNV 133 (226)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhcc
Confidence 699999999874 446779999999999999999999999999974
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.08 E-value=4.1e-10 Score=115.73 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=91.8
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
....|+||.||||||||||+++.+++..+..+ | ++...-+.+.++-++. +
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~------~--i~vsa~eL~sk~vGEs----------------------E 193 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIE------P--IVMSAGELESENAGEP----------------------G 193 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCC------e--EEEEHHHhhcCcCCcH----------------------H
Confidence 45789999999999999999999999988543 1 2223322222222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh---hcCCeEEEecCCCCC---------hhhHHHHHHHHHHHH
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDII---SKTWLICFDEFQVTD---------IADAMILKRLFTELF 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~---~~~~lLc~DEf~v~d---------~~da~iL~~Lfn~l~ 208 (438)
+. -|+++ ..|.+.+ .++++|+||||+..- ...++....|++.+-
T Consensus 194 k~------IR~~F------------------~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D 249 (413)
T PLN00020 194 KL------IRQRY------------------REAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIAD 249 (413)
T ss_pred HH------HHHHH------------------HHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhc
Confidence 11 11111 1243332 468999999999642 123444455555431
Q ss_pred ----------------HCCCEEEEecCCC----hhhhhcCCCCcCCccc----HHHHHHhhccccccccccchhccc
Q psy318 209 ----------------QLGVVVVATSNRA----PDDLYKNGLQRSNFLP----FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 209 ----------------~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p----~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
..++.||+|+|+| |+-+.++++++..++| .+++|+.++.-..++ ..|..+..
T Consensus 250 ~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv 325 (413)
T PLN00020 250 NPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVS-REDVVKLV 325 (413)
T ss_pred CCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCC-HHHHHHHH
Confidence 3457899999995 5666668898887777 466788887777776 56665543
No 35
>KOG0730|consensus
Probab=99.06 E-value=3.6e-10 Score=121.82 Aligned_cols=145 Identities=26% Similarity=0.386 Sum_probs=97.7
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHH-HHHHHHHHHHHhhhcccCCCCCCCCCccccchHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLD-VHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEE 139 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~-v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (438)
...+||||++|||||||||+++.++.+.+... |..- --+.+.++-+..
T Consensus 464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n---------FlsvkgpEL~sk~vGeS---------------------- 512 (693)
T KOG0730|consen 464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMN---------FLSVKGPELFSKYVGES---------------------- 512 (693)
T ss_pred cCCCCceEEEECCCCcchHHHHHHHhhhhcCC---------eeeccCHHHHHHhcCch----------------------
Confidence 35789999999999999999999999887421 1100 011112222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hhHHHHHHHHHHHH---
Q psy318 140 EEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------ADAMILKRLFTELF--- 208 (438)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~da~iL~~Lfn~l~--- 208 (438)
++.. |. +..-|++ ..+++|+|||++.+.. ....+|.+|++.|.
T Consensus 513 Er~i----------------r~--------iF~kAR~--~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 513 ERAI----------------RE--------VFRKARQ--VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred HHHH----------------HH--------HHHHHhh--cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 0000 00 1112333 3469999999998532 23456778887774
Q ss_pred -HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhcccc
Q psy318 209 -QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 209 -~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
..++.||+++|+| |+-|.+|++++-.+.| .+++|+.+.+.+.++..+|.+....
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 3356788999996 7778889999888776 5789999999999988888887654
No 36
>KOG0651|consensus
Probab=98.95 E-value=2.1e-09 Score=107.62 Aligned_cols=142 Identities=27% Similarity=0.371 Sum_probs=88.0
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHH-HHHHHHhhhcccCCCCCCCCCccccchHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKI-HEVKKILARDKAKSYDPGVPNRLDVMKEE 139 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (438)
...+|+|+.||||+|+|||+|+.+++.++-+. |+.-+...+ .+.-++.+
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~n---------fl~v~ss~lv~kyiGEsa--------------------- 211 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVN---------FLKVVSSALVDKYIGESA--------------------- 211 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCc---------eEEeeHhhhhhhhcccHH---------------------
Confidence 67889999999999999999999999988543 222222111 11111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC--------ChhhHHH---HHHHHHHHH
Q psy318 140 EEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT--------DIADAMI---LKRLFTELF 208 (438)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~--------d~~da~i---L~~Lfn~l~ 208 (438)
++ -|++.+| |++. ..++|++||++.. ..++.++ |-+|.|.+.
T Consensus 212 ----Rl-IRemf~y--------------------A~~~--~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd 264 (388)
T KOG0651|consen 212 ----RL-IRDMFRY--------------------AREV--IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD 264 (388)
T ss_pred ----HH-HHHHHHH--------------------Hhhh--CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc
Confidence 00 0122222 5553 3599999999974 2455555 445555553
Q ss_pred H----CCCEEEEecCCC----hhhhhcCCCCcCCcccHH------HHHHhhccccccccccchhc
Q psy318 209 Q----LGVVVVATSNRA----PDDLYKNGLQRSNFLPFI------DVLKTYCDVASLNSNIDYRS 259 (438)
Q Consensus 209 ~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~I------~~L~~~~~vv~ld~g~DyR~ 259 (438)
. ..+.+|+|+|+| |.-|.+++++|....|++ .+++-|...+..-+..||+-
T Consensus 265 gfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~ea 329 (388)
T KOG0651|consen 265 GFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEA 329 (388)
T ss_pred cchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHH
Confidence 2 346899999996 667777899998888854 34444555555555556653
No 37
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.94 E-value=5.5e-09 Score=98.80 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=39.4
Q ss_pred hcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318 179 SKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATSNRAPDDL 225 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L 225 (438)
.+.++|+|||++..+. .++..|+.+++.+...+..+|+|||.+|.++
T Consensus 89 ~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~ 137 (226)
T TIGR03420 89 EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL 137 (226)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence 4578999999998765 4477899999998888889999999988665
No 38
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.94 E-value=7.8e-09 Score=107.86 Aligned_cols=82 Identities=23% Similarity=0.273 Sum_probs=51.4
Q ss_pred hcCCeEEEecCCCCC-----------hhhHHHHHHHHHHHHH----CCCEEEEecCCC----hhhhhcCCCCcCCccc--
Q psy318 179 SKTWLICFDEFQVTD-----------IADAMILKRLFTELFQ----LGVVVVATSNRA----PDDLYKNGLQRSNFLP-- 237 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d-----------~~da~iL~~Lfn~l~~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-- 237 (438)
..+.+|+|||++..- ...+..+..+++.+-. .++.+|+|||++ |+-+.++++++....|
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 467899999999641 1112345666666532 356789999974 4444456677665554
Q ss_pred ----HHHHHHhhccccccccccchhcc
Q psy318 238 ----FIDVLKTYCDVASLNSNIDYRSL 260 (438)
Q Consensus 238 ----~I~~L~~~~~vv~ld~g~DyR~~ 260 (438)
...+++.++....+..+.|+-..
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd~~~l 343 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVDLEDF 343 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccCHHHH
Confidence 34567777776777666666543
No 39
>KOG0736|consensus
Probab=98.93 E-value=1.6e-09 Score=118.28 Aligned_cols=147 Identities=22% Similarity=0.379 Sum_probs=97.9
Q ss_pred cccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHHHHhhhcccCCCCCCCCCccc
Q psy318 57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVKKILARDKAKSYDPGVPNRLD 134 (438)
Q Consensus 57 ~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (438)
+|+.......||+||||||||||.|+.|.+..++.. | +.| -+.|..+-++.
T Consensus 697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~------F----lSVKGPELLNMYVGqS----------------- 749 (953)
T KOG0736|consen 697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN------F----LSVKGPELLNMYVGQS----------------- 749 (953)
T ss_pred hhhccccccceeEEECCCCCchHHHHHHHHhhceee------E----EeecCHHHHHHHhcch-----------------
Confidence 344445556899999999999999999998887532 1 111 12333332221
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hh--HHHHHHHH
Q psy318 135 VMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------AD--AMILKRLF 204 (438)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~d--a~iL~~Lf 204 (438)
++ -.|. ...+.....+++|+|||++.+.+ +. ..++.+|+
T Consensus 750 ----------E~-----------NVR~----------VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLL 798 (953)
T KOG0736|consen 750 ----------EE-----------NVRE----------VFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLL 798 (953)
T ss_pred ----------HH-----------HHHH----------HHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHH
Confidence 00 0011 11233335789999999998643 22 24677777
Q ss_pred HHHH------HCCCEEEEecCCC----hhhhhcCCCCcCCccc-------HHHHHHhhccccccccccchhccc
Q psy318 205 TELF------QLGVVVVATSNRA----PDDLYKNGLQRSNFLP-------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 205 n~l~------~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
..|- ..++-||.++||| |+-|.+|+|++-.|+- -...|+.....+.+|.++|.+...
T Consensus 799 AELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiA 872 (953)
T KOG0736|consen 799 AELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIA 872 (953)
T ss_pred HHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHH
Confidence 7764 2346788999997 7888888887665543 357888889999999999998754
No 40
>KOG0728|consensus
Probab=98.91 E-value=1.4e-08 Score=99.44 Aligned_cols=145 Identities=24% Similarity=0.328 Sum_probs=100.1
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
....|||++||||||+|||.|+.+.++..... -.|+.=.+.++.. -+...
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahht~c~-firvsgselvqk~-------igegs---------------------- 226 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT-FIRVSGSELVQKY-------IGEGS---------------------- 226 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhhcceE-EEEechHHHHHHH-------hhhhH----------------------
Confidence 45789999999999999999999999876422 3455443332221 11100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH-
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFTELF- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~- 208 (438)
+-.|. +...|++ ..+.+++.||++.+. .+| +.-+..|+|+|.
T Consensus 227 ----------------rmvre--------lfvmare--hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 227 ----------------RMVRE--------LFVMARE--HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred ----------------HHHHH--------HHHHHHh--cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 00001 2334555 458999999999742 223 233556777763
Q ss_pred ---HCCCEEEEecCC----ChhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318 209 ---QLGVVVVATSNR----APDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 209 ---~~g~~lV~TSN~----~P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
..+..+|+++|+ .|+-|.+++++|..-.| ..++|+-|+..+++..|.|.|...
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kia 346 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIA 346 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHH
Confidence 234679999998 59999999999886544 688999999999999999999764
No 41
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.88 E-value=9.3e-09 Score=98.13 Aligned_cols=95 Identities=19% Similarity=0.292 Sum_probs=67.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE 143 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
.+++++|+|++|+|||||+.++++.+..+ ...+.|-+.-....
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~~~~~i~~~~~~~------------------------------------ 83 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYG-GRNARYLDAASPLL------------------------------------ 83 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEehHHhHH------------------------------------
Confidence 35789999999999999999999887433 33444433211100
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCC-EEEEecCCCh
Q psy318 144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGV-VVVATSNRAP 222 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~-~lV~TSN~~P 222 (438)
........++|+|||++..+...+..|+++++.+.+.+. .+|+|++.+|
T Consensus 84 ------------------------------~~~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 84 ------------------------------AFDFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred ------------------------------HHhhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 001124689999999998877777789999999988876 4778888776
Q ss_pred hhh
Q psy318 223 DDL 225 (438)
Q Consensus 223 ~~L 225 (438)
..+
T Consensus 134 ~~~ 136 (227)
T PRK08903 134 LAL 136 (227)
T ss_pred HhC
Confidence 433
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.87 E-value=1e-08 Score=100.95 Aligned_cols=179 Identities=24% Similarity=0.386 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 10 LPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 10 ~p~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+|-+.....+..-.+..=-.|..|.....-+.+=|++ |. . |+ .=+||.|++|||+|+||||++.++.+.+
T Consensus 106 ~~~~~~~e~~~~it~ddViGqEeAK~kcrli~~yLen--Pe--~----Fg--~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 106 TPREEDREIISDITLDDVIGQEEAKRKCRLIMEYLEN--PE--R----FG--DWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred CcchhhhhhhccccHhhhhchHHHHHHHHHHHHHhhC--hH--H----hc--ccCcceeEEECCCCccHHHHHHHHhccc
Confidence 3444444433333332233799999988888777764 21 1 21 2368999999999999999999999988
Q ss_pred hcccceeeech------hhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy318 90 ETKQKQRVHFN------KFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERERERERERERERERERERE 163 (438)
Q Consensus 90 ~~~~k~R~Hf~------~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 163 (438)
.++- +|-. +.+.+-.+++|++-
T Consensus 176 kvp~---l~vkat~liGehVGdgar~Ihely------------------------------------------------- 203 (368)
T COG1223 176 KVPL---LLVKATELIGEHVGDGARRIHELY------------------------------------------------- 203 (368)
T ss_pred CCce---EEechHHHHHHHhhhHHHHHHHHH-------------------------------------------------
Confidence 5541 1111 11222223333221
Q ss_pred ccCCCCchHHHHHHhhcCCeEEEecCCCC--ChhhHHH---HHHHHHHHH--------HCCCEEEEecCCChhhhhcC--
Q psy318 164 AKSYDPIPPVANDIISKTWLICFDEFQVT--DIADAMI---LKRLFTELF--------QLGVVVVATSNRAPDDLYKN-- 228 (438)
Q Consensus 164 ~~~~d~i~~va~~~~~~~~lLc~DEf~v~--d~~da~i---L~~Lfn~l~--------~~g~~lV~TSN~~P~~L~~~-- 228 (438)
.-|.+ ..+++++|||++.+ |..-|.+ +..+.|+|+ ..|++.|+++|+ |+-|.+.
T Consensus 204 --------~rA~~--~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~-p~~LD~aiR 272 (368)
T COG1223 204 --------ERARK--AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR-PELLDPAIR 272 (368)
T ss_pred --------HHHHh--cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC-hhhcCHHHH
Confidence 12334 35899999999984 3222221 333344443 467889999999 5777663
Q ss_pred -CCCcCC-c-cc----HHHHHHhhccccccccccchhccc
Q psy318 229 -GLQRSN-F-LP----FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 229 -gl~r~~-F-~p----~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
++.-+. | +| .+.+|+.....+.|.-..+.|...
T Consensus 273 sRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~ 312 (368)
T COG1223 273 SRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLA 312 (368)
T ss_pred hhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHH
Confidence 232221 1 22 466777777776665445555443
No 43
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.86 E-value=2.2e-08 Score=102.80 Aligned_cols=29 Identities=34% Similarity=0.707 Sum_probs=26.2
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...|+|++||||+|||||+|+.++++.+.
T Consensus 153 ~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 153 IEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 45689999999999999999999998774
No 44
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.85 E-value=2.3e-08 Score=103.90 Aligned_cols=83 Identities=23% Similarity=0.289 Sum_probs=50.4
Q ss_pred hcCCeEEEecCCCCC-----------hhhHHHHHHHHHHHHH----CCCEEEEecCCC----hhhhhcCCCCcCCccc--
Q psy318 179 SKTWLICFDEFQVTD-----------IADAMILKRLFTELFQ----LGVVVVATSNRA----PDDLYKNGLQRSNFLP-- 237 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d-----------~~da~iL~~Lfn~l~~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-- 237 (438)
....+|+|||++.+- ...+..+..+++.+-. .++.+|+|+|++ |+-+.++++++....|
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 356799999999751 1112234455544431 246788999984 3444445566554443
Q ss_pred ----HHHHHHhhccccccccccchhccc
Q psy318 238 ----FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 238 ----~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
..++|+.++.-+.+..+.|+....
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~~~~la 330 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVDLEELA 330 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCCHHHHH
Confidence 356777777777777567766543
No 45
>KOG0652|consensus
Probab=98.84 E-value=2.7e-08 Score=98.03 Aligned_cols=146 Identities=21% Similarity=0.351 Sum_probs=94.6
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
...+|||+++|||||+|||+++.+....... +|+...--.+-+.- +.+..
T Consensus 201 gi~pPKGvLmYGPPGTGKTlmARAcAaqT~a---------TFLKLAgPQLVQMf---------------------IGdGA 250 (424)
T KOG0652|consen 201 GIRPPKGVLMYGPPGTGKTLMARACAAQTNA---------TFLKLAGPQLVQMF---------------------IGDGA 250 (424)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHHhccc---------hHHHhcchHHHhhh---------------------hcchH
Confidence 4678999999999999999999988665421 23222111111110 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH-
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFTELF- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~- 208 (438)
+ + .|. -.++|++ +.+.+++|||++.+. .+| +.-+..|+|+|-
T Consensus 251 k-L---------------VRD--------AFaLAKE--kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 251 K-L---------------VRD--------AFALAKE--KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred H-H---------------HHH--------HHHHhhc--cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 0 0 011 1234555 568999999999742 122 334556777774
Q ss_pred ---HCCCEEEEecCC----ChhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhcccc
Q psy318 209 ---QLGVVVVATSNR----APDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 209 ---~~g~~lV~TSN~----~P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
...+.+|+++|+ .|+-|..++|+|..-.| .-.+++-|+..+++...+.|-...+
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 234679999998 49999999999987665 3467888899999987888876554
No 46
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.84 E-value=3e-08 Score=105.90 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+..+..+|.++..-+.+ |. . +-......|+|++||||||||||+|+.++...+.
T Consensus 59 g~~~~k~~l~~~~~~l~~--~~---~--~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 59 GIDEAKEELMEIVDFLKN--PS---K--FTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CHHHHHHHHHHHHHHHHC--HH---H--HHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 455666666666554432 10 0 0001246689999999999999999999987763
No 47
>CHL00176 ftsH cell division protein; Validated
Probab=98.84 E-value=4.1e-08 Score=108.00 Aligned_cols=167 Identities=21% Similarity=0.280 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHH
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHA 108 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~ 108 (438)
.+.++.++|..+..-+++.. . +.-+ ....|+|++||||||||||+|+.++...+..+- ..+...+|.....
T Consensus 187 G~~~~k~~l~eiv~~lk~~~----~-~~~~--g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-i~is~s~f~~~~~- 257 (638)
T CHL00176 187 GIEEAKEEFEEVVSFLKKPE----R-FTAV--GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-FSISGSEFVEMFV- 257 (638)
T ss_pred ChHHHHHHHHHHHHHHhCHH----H-Hhhc--cCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-eeccHHHHHHHhh-
Confidence 46666777777766554310 0 0001 235689999999999999999999988764321 1111122211100
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHH-HHHhhcCCeEEEe
Q psy318 109 KIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVA-NDIISKTWLICFD 187 (438)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va-~~~~~~~~lLc~D 187 (438)
..... .+..+. ......+++|+||
T Consensus 258 ---g~~~~----------------------------------------------------~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 258 ---GVGAA----------------------------------------------------RVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred ---hhhHH----------------------------------------------------HHHHHHHHHhcCCCcEEEEe
Confidence 00000 000011 1112457899999
Q ss_pred cCCCCC-----------hhhHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHH
Q psy318 188 EFQVTD-----------IADAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVL 242 (438)
Q Consensus 188 Ef~v~d-----------~~da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L 242 (438)
|++.+. ......|..|++.+- ..++.+|+|+|++ |+-+.++++++....+ ..++|
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL 362 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL 362 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence 998752 122344666665552 2456788999984 4555566777655433 35677
Q ss_pred Hhhccccccccccchhc
Q psy318 243 KTYCDVASLNSNIDYRS 259 (438)
Q Consensus 243 ~~~~~vv~ld~g~DyR~ 259 (438)
+.++.-..+....|+..
T Consensus 363 ~~~l~~~~~~~d~~l~~ 379 (638)
T CHL00176 363 KVHARNKKLSPDVSLEL 379 (638)
T ss_pred HHHHhhcccchhHHHHH
Confidence 77776555554455544
No 48
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.82 E-value=1.9e-08 Score=107.81 Aligned_cols=29 Identities=38% Similarity=0.698 Sum_probs=26.6
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+.|+|++||||||||||+++.++++.+.
T Consensus 213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 213 LKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 46789999999999999999999999884
No 49
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.81 E-value=1.5e-08 Score=119.71 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=47.2
Q ss_pred hHHHHHHhhcCCeEEEecCCCCChhhHH--HHHHHHHHHH-------HCCCEEEEecCCC----hhhhhcCCCCcCCccc
Q psy318 171 PPVANDIISKTWLICFDEFQVTDIADAM--ILKRLFTELF-------QLGVVVVATSNRA----PDDLYKNGLQRSNFLP 237 (438)
Q Consensus 171 ~~va~~~~~~~~lLc~DEf~v~d~~da~--iL~~Lfn~l~-------~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p 237 (438)
...|++ ..+++|.||||+.++..+.. .|..|++.|- ..|+.||+|+|+| |+-+.+|+++|....+
T Consensus 1725 FelARk--~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir 1802 (2281)
T CHL00206 1725 FELAKA--MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIR 1802 (2281)
T ss_pred HHHHHH--CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeC
Confidence 344555 46999999999998765532 2566667764 2356788999996 7778889999887654
No 50
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.80 E-value=2.8e-08 Score=85.14 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=21.4
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|+||||+|+|||+|+..+.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999884
No 51
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.9e-08 Score=106.54 Aligned_cols=169 Identities=22% Similarity=0.344 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHH
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHA 108 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~ 108 (438)
...+|.++|.++.+-|++ |. + |..-...-|+|++|+||||+|||+|+.+....+.+|- ..+...+|+....
T Consensus 154 G~dEakeel~EiVdfLk~--p~--k---y~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-f~iSGS~FVemfV- 224 (596)
T COG0465 154 GVDEAKEELSELVDFLKN--PK--K---YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-FSISGSDFVEMFV- 224 (596)
T ss_pred CcHHHHHHHHHHHHHHhC--ch--h---hHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-eeccchhhhhhhc-
Confidence 456888999998888864 21 1 1111236799999999999999999999999887762 3445555544332
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEec
Q psy318 109 KIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDE 188 (438)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DE 188 (438)
.+-+ .+.|. +..-|++ ..+++++|||
T Consensus 225 GvGA--------------------------------------------sRVRd--------LF~qAkk--~aP~IIFIDE 250 (596)
T COG0465 225 GVGA--------------------------------------------SRVRD--------LFEQAKK--NAPCIIFIDE 250 (596)
T ss_pred CCCc--------------------------------------------HHHHH--------HHHHhhc--cCCCeEEEeh
Confidence 0000 00111 1111333 4578999999
Q ss_pred CCCCCh---------hh--HHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCcccH------HHHHH
Q psy318 189 FQVTDI---------AD--AMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLPF------IDVLK 243 (438)
Q Consensus 189 f~v~d~---------~d--a~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~------I~~L~ 243 (438)
++.+.. .| ..-|.+|+-.+- ..|+.+++++|+| |+-|.+++++|+...+. -++|+
T Consensus 251 iDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk 330 (596)
T COG0465 251 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILK 330 (596)
T ss_pred hhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHH
Confidence 997531 11 112444444442 2567888999998 99999999999987664 35778
Q ss_pred hhccccccccccchhcc
Q psy318 244 TYCDVASLNSNIDYRSL 260 (438)
Q Consensus 244 ~~~~vv~ld~g~DyR~~ 260 (438)
-|..-+.+...+|+...
T Consensus 331 vH~~~~~l~~~Vdl~~i 347 (596)
T COG0465 331 VHAKNKPLAEDVDLKKI 347 (596)
T ss_pred HHhhcCCCCCcCCHHHH
Confidence 78888888878888874
No 52
>KOG0729|consensus
Probab=98.77 E-value=2.2e-08 Score=98.81 Aligned_cols=136 Identities=26% Similarity=0.343 Sum_probs=82.3
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
...+|||++||||||+|||.++.+..+....- -.||-=.+. ++++-+..+
T Consensus 207 gidppkgvllygppgtgktl~aravanrtdac-firvigsel-------vqkyvgega---------------------- 256 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDAC-FIRVIGSEL-------VQKYVGEGA---------------------- 256 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCce-EEeehhHHH-------HHHHhhhhH----------------------
Confidence 46789999999999999999999998865321 122222111 122222110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC------C--hhh---HHHHHHHHHHHH-
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT------D--IAD---AMILKRLFTELF- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~------d--~~d---a~iL~~Lfn~l~- 208 (438)
+-.|. +.+.|+. +.+++++|||++.. | .+| +.-+..|+|+|-
T Consensus 257 ----------------rmvre--------lf~mart--kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldg 310 (435)
T KOG0729|consen 257 ----------------RMVRE--------LFEMART--KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG 310 (435)
T ss_pred ----------------HHHHH--------HHHHhcc--cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccC
Confidence 00011 2222332 67999999999974 2 122 334556777764
Q ss_pred --HCC-CEEEEecCCC----hhhhhcCCCCcCCc--ccH----HHHHHhhccccccc
Q psy318 209 --QLG-VVVVATSNRA----PDDLYKNGLQRSNF--LPF----IDVLKTYCDVASLN 252 (438)
Q Consensus 209 --~~g-~~lV~TSN~~----P~~L~~~gl~r~~F--~p~----I~~L~~~~~vv~ld 252 (438)
.+| ..+++++|+| |+-|.+++++|..- +|- -.+++-|...+.++
T Consensus 311 fdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve 367 (435)
T KOG0729|consen 311 FDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE 367 (435)
T ss_pred CCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc
Confidence 344 5788999997 88888899998643 332 23455555555555
No 53
>KOG0735|consensus
Probab=98.76 E-value=2.3e-08 Score=108.79 Aligned_cols=145 Identities=21% Similarity=0.356 Sum_probs=95.2
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
+.+.+.|++||||||||||+|+.+...+.+.. |-.- .--+.+.++-++.
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~------fisv--KGPElL~KyIGaS----------------------- 745 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLR------FISV--KGPELLSKYIGAS----------------------- 745 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCee------EEEe--cCHHHHHHHhccc-----------------------
Confidence 44567999999999999999999998877421 1000 0012233332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hhHHHHHHHHHHHH----
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------ADAMILKRLFTELF---- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~da~iL~~Lfn~l~---- 208 (438)
.+..|. -.-+.....+++|+||||+.+.+ -....+.+|+..|-
T Consensus 746 ---------------Eq~vR~----------lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg 800 (952)
T KOG0735|consen 746 ---------------EQNVRD----------LFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG 800 (952)
T ss_pred ---------------HHHHHH----------HHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc
Confidence 001111 11223345789999999998532 11345666777664
Q ss_pred HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318 209 QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 209 ~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
-.|+.+++++.|| |+-|.+|++++..+-| .+++|+....-..++...|+-...
T Consensus 801 l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a 863 (952)
T KOG0735|consen 801 LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA 863 (952)
T ss_pred cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence 2466778888886 8889999999988766 477888888888888788887654
No 54
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.74 E-value=7.5e-08 Score=81.96 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=34.0
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHH-----CCCEEEEecCCChh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQ-----LGVVVVATSNRAPD 223 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~-----~g~~lV~TSN~~P~ 223 (438)
.....+|++||++.........+..+++.+.. .+..+|+|+|..+.
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 35679999999998755444556677777653 56788999998765
No 55
>KOG0731|consensus
Probab=98.72 E-value=6.6e-08 Score=106.91 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHH
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHA 108 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~ 108 (438)
.+.+|.++|+++.+=|++ |. .|-......|||++|.||||||||.|+.|.+-...+| =.-+.=.+|+..+.
T Consensus 315 G~deAK~El~E~V~fLKN--P~-----~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-F~svSGSEFvE~~~- 385 (774)
T KOG0731|consen 315 GVDEAKEELMEFVKFLKN--PE-----QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFSVSGSEFVEMFV- 385 (774)
T ss_pred CcHHHHHHHHHHHHHhcC--HH-----HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-eeeechHHHHHHhc-
Confidence 588999999999887764 11 0111245789999999999999999999998877655 11111133332221
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEec
Q psy318 109 KIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDE 188 (438)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DE 188 (438)
... ..+.|. |...|+. ..++++++||
T Consensus 386 ------g~~--------------------------------------asrvr~--------lf~~ar~--~aP~iifide 411 (774)
T KOG0731|consen 386 ------GVG--------------------------------------ASRVRD--------LFPLARK--NAPSIIFIDE 411 (774)
T ss_pred ------ccc--------------------------------------hHHHHH--------HHHHhhc--cCCeEEEecc
Confidence 000 000111 3334444 5689999999
Q ss_pred CCCCC---------hhh---HHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHH
Q psy318 189 FQVTD---------IAD---AMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVL 242 (438)
Q Consensus 189 f~v~d---------~~d---a~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L 242 (438)
|+... .++ +.-|.+|+-.+- ..++++++++|+| |+-|.+++++|..+.. ..+++
T Consensus 412 ida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 412 IDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred cccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHH
Confidence 99742 111 223555555543 3456788899996 7888889999988765 35788
Q ss_pred Hhhccccccc-cccchhccc
Q psy318 243 KTYCDVASLN-SNIDYRSLK 261 (438)
Q Consensus 243 ~~~~~vv~ld-~g~DyR~~~ 261 (438)
+-|..-+.++ ...||....
T Consensus 492 ~~h~~~~~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 492 KVHLRKKKLDDEDVDLSKLA 511 (774)
T ss_pred HHHhhccCCCcchhhHHHHH
Confidence 8888888884 578898843
No 56
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.72 E-value=8.3e-08 Score=107.15 Aligned_cols=83 Identities=27% Similarity=0.377 Sum_probs=55.5
Q ss_pred hcCCeEEEecCCCCCh---------hhHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCcccH---
Q psy318 179 SKTWLICFDEFQVTDI---------ADAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLPF--- 238 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~---------~da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~--- 238 (438)
....+|+|||++.+.. ....++..|+..+- ..++.||+|+|+| |+-+.++++++..+.|.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 4578999999987421 11234455555553 2356788999995 66666778887776663
Q ss_pred ---HHHHHhhccccccccccchhccc
Q psy318 239 ---IDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 239 ---I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
.++++.+..-+.++...|+....
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~l~~la 650 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVDLEELA 650 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHH
Confidence 56777777777777677776554
No 57
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.71 E-value=9e-08 Score=102.34 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=26.9
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
.+.|+|++||||||||||+++.++.+.+..
T Consensus 256 l~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 256 LPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 467899999999999999999999988743
No 58
>KOG0726|consensus
Probab=98.70 E-value=3.9e-08 Score=98.15 Aligned_cols=124 Identities=23% Similarity=0.331 Sum_probs=81.6
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
...+||||.|||+||+|||.|+.+.++..+. +|+.-+-..+-+.....++ .
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANqTSA---------TFlRvvGseLiQkylGdGp------------k-------- 265 (440)
T KOG0726|consen 215 GIKPPKGVILYGEPGTGKTLLAKAVANQTSA---------TFLRVVGSELIQKYLGDGP------------K-------- 265 (440)
T ss_pred CCCCCCeeEEeCCCCCchhHHHHHHhcccch---------hhhhhhhHHHHHHHhccch------------H--------
Confidence 4578999999999999999999999998753 3555555433221111100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH-
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFTELF- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~- 208 (438)
.-.-+..+|.+ ..+.++++|||+.+. .+. +.-+..|+|+|-
T Consensus 266 -------------------------lvRqlF~vA~e--~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldG 318 (440)
T KOG0726|consen 266 -------------------------LVRELFRVAEE--HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 318 (440)
T ss_pred -------------------------HHHHHHHHHHh--cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccC
Confidence 00124566777 458999999999742 111 222446777763
Q ss_pred --HCC-CEEEEecCC----ChhhhhcCCCCcCCcccHHH
Q psy318 209 --QLG-VVVVATSNR----APDDLYKNGLQRSNFLPFID 240 (438)
Q Consensus 209 --~~g-~~lV~TSN~----~P~~L~~~gl~r~~F~p~I~ 240 (438)
.+| +.||+++|+ .|+-+.+++++|..-.|.-+
T Consensus 319 FdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pD 357 (440)
T KOG0726|consen 319 FDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 357 (440)
T ss_pred ccccCCeEEEEecccccccCHhhcCCCccccccccCCCc
Confidence 333 679999998 58889999999887655443
No 59
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.68 E-value=7.2e-08 Score=101.79 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=50.3
Q ss_pred hcCCeEEEecCCCCC--------hhh---HHHHHHHHHHHH----HCCCEEEEecCCChhhhh-----cCCCCcCCccc-
Q psy318 179 SKTWLICFDEFQVTD--------IAD---AMILKRLFTELF----QLGVVVVATSNRAPDDLY-----KNGLQRSNFLP- 237 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn~l~----~~g~~lV~TSN~~P~~L~-----~~gl~r~~F~p- 237 (438)
....+|+|||++.+- .++ +..+..+++.+. ..++.||+|+|++ +.|. ++.+++....|
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~-d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI-ESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh-HHhhHHhccCCeeEEEEEeCC
Confidence 357899999998631 111 234566666663 2357889999983 4444 45566655544
Q ss_pred -----HHHHHHhhccccccccccchhcc
Q psy318 238 -----FIDVLKTYCDVASLNSNIDYRSL 260 (438)
Q Consensus 238 -----~I~~L~~~~~vv~ld~g~DyR~~ 260 (438)
..++++.+..-+.+..+.|+...
T Consensus 354 Pd~~~R~~Il~~~~~k~~l~~dvdl~~l 381 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSKMTLAEDVDLEEF 381 (438)
T ss_pred CCHHHHHHHHHHHHhcCCCCcCcCHHHH
Confidence 35677777666666656666544
No 60
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.2e-07 Score=101.03 Aligned_cols=146 Identities=25% Similarity=0.349 Sum_probs=86.1
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
....|+|++||||||||||||+.++++.+. .+|..+... ..+.++-++. +
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~--~l~sk~vGes----------------------e 321 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGS--ELLSKWVGES----------------------E 321 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeCH--HHhccccchH----------------------H
Confidence 356788999999999999999999988542 233222211 1122111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hhHHHHHHHHHHHH----
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------ADAMILKRLFTELF---- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~da~iL~~Lfn~l~---- 208 (438)
+..+ . +...|+ ...+++|+|||++..-. ....++.+++..+-
T Consensus 322 k~ir----------------~--------~F~~A~--~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 322 KNIR----------------E--------LFEKAR--KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred HHHH----------------H--------HHHHHH--cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc
Confidence 0000 0 111133 35789999999997421 11356677776663
Q ss_pred HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhcc--ccccccccchhcccc
Q psy318 209 QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCD--VASLNSNIDYRSLKA 262 (438)
Q Consensus 209 ~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~--vv~ld~g~DyR~~~~ 262 (438)
..++.||.|+|+| |+-+.+++|++..+.| ..++++.++. ...+....|++....
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~ 441 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE 441 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH
Confidence 2345678899985 5555667888777665 3566666666 332344677776543
No 61
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.50 E-value=7.3e-07 Score=98.44 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=51.0
Q ss_pred hcCCeEEEecCCCCCh-----------hhHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc--
Q psy318 179 SKTWLICFDEFQVTDI-----------ADAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP-- 237 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~-----------~da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-- 237 (438)
..+.+|+|||++.... .....+..++..+- ..++.+|+|+|+| |.-+.+++++|....+
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 3578999999987521 11224555554442 2456788899984 4445556777765554
Q ss_pred ----HHHHHHhhccccccccccchhc
Q psy318 238 ----FIDVLKTYCDVASLNSNIDYRS 259 (438)
Q Consensus 238 ----~I~~L~~~~~vv~ld~g~DyR~ 259 (438)
...+|+.+...+.+....|+..
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d~~~ 348 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDIDAAI 348 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCCHHH
Confidence 4567787777777765666543
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.48 E-value=1.1e-06 Score=88.81 Aligned_cols=58 Identities=12% Similarity=0.276 Sum_probs=40.7
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
...+++|||++......+..|.+.++. +...+.+|+++|.++. ++.-|+.+|.++.+.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~-~~~~t~~il~~n~~~~--------------i~~~L~SRc~~i~f~ 156 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEI-YSNTTRFALACNTSSK--------------IIEPIQSRCAIVRFS 156 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhc-ccCCceEEEEeCCccc--------------cchhHHHhhhcccCC
Confidence 478999999999887767777666653 3345678889986431 234566677777776
No 63
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.47 E-value=1.1e-06 Score=87.21 Aligned_cols=48 Identities=29% Similarity=0.355 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++.+|......... ....+++++||||+|+|||+|+.++.+.+.
T Consensus 8 G~~~~~~~l~~~l~~~~~--------------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 8 GQEKVKEQLQLFIEAAKM--------------RQEALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CHHHHHHHHHHHHHHHHh--------------cCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 477777777776544321 123457899999999999999999988774
No 64
>KOG0739|consensus
Probab=98.37 E-value=1.4e-06 Score=87.50 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=27.4
Q ss_pred cccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 57 ~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+|..+..+-+|++||||||+|||.|+.+......
T Consensus 158 lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 158 LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 4433445569999999999999999999977664
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.37 E-value=5e-06 Score=83.00 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=39.3
Q ss_pred hcCCeEEEecCCCC-ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVT-DIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~-d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
...++|+|||++.. ....+..|..+++.. ..++.+|+|+|.+. .++..|+.+|.++.+.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~-~~~~~~Ilt~n~~~--------------~l~~~l~sR~~~i~~~ 158 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAY-SKNCSFIITANNKN--------------GIIEPLRSRCRVIDFG 158 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhc-CCCceEEEEcCChh--------------hchHHHHhhceEEEeC
Confidence 35789999999987 433344555555542 35678999998632 1345677788777764
No 66
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.36 E-value=1.7e-06 Score=96.79 Aligned_cols=29 Identities=34% Similarity=0.705 Sum_probs=26.1
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...|+|++||||+|||||+|+.++.+.+.
T Consensus 209 i~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 209 IEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 46789999999999999999999988774
No 67
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.35 E-value=2.9e-06 Score=84.92 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.8
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++++||||+|+|||+++.++...+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3699999999999999999998874
No 68
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.29 E-value=1.5e-06 Score=84.38 Aligned_cols=61 Identities=25% Similarity=0.303 Sum_probs=41.4
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 17 EKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 17 ~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
..+.=..|..=..|.+++..|.-+.+..+. .......++||||||+|||.|+..+.+.+..
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~--------------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~ 76 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKK--------------RGEALDHMLFYGPPGLGKTTLARIIANELGV 76 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHC--------------TTS---EEEEESSTTSSHHHHHHHHHHHCT-
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHh--------------cCCCcceEEEECCCccchhHHHHHHHhccCC
Confidence 334444555556899999999888776542 1123457999999999999999999998853
No 69
>KOG0732|consensus
Probab=98.28 E-value=1.3e-06 Score=99.32 Aligned_cols=128 Identities=24% Similarity=0.391 Sum_probs=83.7
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
+..+|+|+++||+||+|||..+.+...+++.. .+++-| ||..-..-+.++-+.. +
T Consensus 295 ~itpPrgvL~~GppGTGkTl~araLa~~~s~~-~~kisf--fmrkgaD~lskwvgEa----------------------E 349 (1080)
T KOG0732|consen 295 NITPPRGVLFHGPPGTGKTLMARALAAACSRG-NRKISF--FMRKGADCLSKWVGEA----------------------E 349 (1080)
T ss_pred ccCCCcceeecCCCCCchhHHHHhhhhhhccc-ccccch--hhhcCchhhccccCcH----------------------H
Confidence 46789999999999999999999999999743 456666 6766655555443321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hhHHHHHHHHH---HHHH
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------ADAMILKRLFT---ELFQ 209 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~da~iL~~Lfn---~l~~ 209 (438)
..++ -++..|++ .++.++.||||+-+.+ ..+.+...||. .+-.
T Consensus 350 Rqlr------------------------llFeeA~k--~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds 403 (1080)
T KOG0732|consen 350 RQLR------------------------LLFEEAQK--TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS 403 (1080)
T ss_pred HHHH------------------------HHHHHHhc--cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC
Confidence 1111 13444655 5689999999995432 12334433333 3345
Q ss_pred CC-CEEEEecCCC----hhhhhcCCCCcCCcccHH
Q psy318 210 LG-VVVVATSNRA----PDDLYKNGLQRSNFLPFI 239 (438)
Q Consensus 210 ~g-~~lV~TSN~~----P~~L~~~gl~r~~F~p~I 239 (438)
+| ++||.++||+ |+.-.+++++|+.+.|.-
T Consensus 404 RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp 438 (1080)
T KOG0732|consen 404 RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLP 438 (1080)
T ss_pred CCceEEEcccCCccccchhhcCCcccceeEeeeCC
Confidence 66 4677899996 344456888998776643
No 70
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.28 E-value=5.9e-06 Score=83.66 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|.+++..|..+...... ....+.+++||||+|+|||+|+.++.+.+.
T Consensus 29 G~~~~~~~l~~~l~~~~~--------------~~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKK--------------RGEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CcHHHHHHHHHHHHHHHh--------------cCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 688888888877655422 123467899999999999999999998874
No 71
>KOG0738|consensus
Probab=98.25 E-value=3.2e-06 Score=87.33 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=28.5
Q ss_pred cccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 57 ~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
||..-..+-|||+++||||+|||||+.+++..+.+
T Consensus 237 ~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 237 FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred HHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 44323345699999999999999999999998864
No 72
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.23 E-value=9.2e-06 Score=92.41 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=37.7
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHH--H--------CCCEEEEecCCChhhhhcC
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELF--Q--------LGVVVVATSNRAPDDLYKN 228 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~--~--------~g~~lV~TSN~~P~~L~~~ 228 (438)
....||+||||+..++.-..+|+++++.-+ + +...+|+|||..+..|...
T Consensus 667 ~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~ 726 (852)
T TIGR03345 667 KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMAL 726 (852)
T ss_pred CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHh
Confidence 457999999999887765566777776543 1 3467899999998888763
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=98.21 E-value=1e-05 Score=86.41 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=24.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+++++||||+|+|||+++.++.+.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999988873
No 74
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.18 E-value=2.5e-05 Score=76.97 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=28.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
.+.|+|+|++|||||+|+.++...+. ..-.+++++.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg-~~~~~i~~~~ 56 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRD-RPVMLINGDA 56 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC-CCEEEEeCCc
Confidence 46799999999999999999987663 2345666654
No 75
>KOG0730|consensus
Probab=98.17 E-value=2.6e-06 Score=92.54 Aligned_cols=142 Identities=25% Similarity=0.392 Sum_probs=84.6
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
..+.|+|+++|||||+|||+|++++.+... .|+ |.....+-|++.-++. +
T Consensus 214 g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~--~~i~~peli~k~~gEt----------------------e 263 (693)
T KOG0730|consen 214 GIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFL--FLINGPELISKFPGET----------------------E 263 (693)
T ss_pred CCCCCCCccccCCCCCChHHHHHHHHHHhC------cee--EecccHHHHHhcccch----------------------H
Confidence 467899999999999999999999987653 222 3444444444432221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhc-CCeEEEecCCCCCh------h-hHHHHHHHHHHHH---H
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISK-TWLICFDEFQVTDI------A-DAMILKRLFTELF---Q 209 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~-~~lLc~DEf~v~d~------~-da~iL~~Lfn~l~---~ 209 (438)
+.+| ..++.....+ ..++++||++.+.+ . ...+..+|+..+. .
T Consensus 264 ~~LR--------------------------~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~ 317 (693)
T KOG0730|consen 264 SNLR--------------------------KAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP 317 (693)
T ss_pred HHHH--------------------------HHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC
Confidence 1111 1112222233 78999999998643 1 2234444444443 2
Q ss_pred CC-CEEEEecCCChhhhhc----CCCCcCCccc------HHHHHHhhccccccccccchhc
Q psy318 210 LG-VVVVATSNRAPDDLYK----NGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRS 259 (438)
Q Consensus 210 ~g-~~lV~TSN~~P~~L~~----~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~ 259 (438)
.+ ++++.|+|+ |+.|.+ ++++++.+.- ..++|+.++..+.+.+..|.-.
T Consensus 318 ~~~vivl~atnr-p~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~ 377 (693)
T KOG0730|consen 318 DAKVIVLAATNR-PDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLED 377 (693)
T ss_pred cCcEEEEEecCC-ccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHH
Confidence 23 456667777 466655 3566665432 4678888998888875555543
No 76
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.15 E-value=5.8e-06 Score=83.99 Aligned_cols=27 Identities=33% Similarity=0.692 Sum_probs=24.3
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+..+|||||+|+|||+++..+++.+.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998874
No 77
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.15 E-value=9.2e-06 Score=69.33 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.0
Q ss_pred eEEEccCCCCHhHHHHHHHHhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l 89 (438)
|||||++|+|||+|+..+...+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999987766
No 78
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.13 E-value=8.3e-06 Score=83.82 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=24.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..+||||++|+|||+++..+++.+.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999884
No 79
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.10 E-value=2.5e-05 Score=65.37 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcc
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETK 92 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~ 92 (438)
++.++|+||+|+|||+++..+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4679999999999999999998888543
No 80
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.08 E-value=2.8e-05 Score=77.09 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=37.2
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
...+|++||++.........|..+++... ....+|+++|.+. .+++.|+.+|.++.+.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~-~~~~lIl~~~~~~--------------~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYS-QNTRFILSCNYSS--------------KIIDPIQSRCAVFRFS 159 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCC-CCCeEEEEeCCcc--------------ccchhHHHHhheeeeC
Confidence 35799999999987655555666665533 3357788887541 1234466667666665
No 81
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.06 E-value=3.4e-05 Score=86.97 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=44.3
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCC--CEEEEecCC--Chhhhhc-----CCCCcCCccc-----HHHHHHhh
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLG--VVVVATSNR--APDDLYK-----NGLQRSNFLP-----FIDVLKTY 245 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g--~~lV~TSN~--~P~~L~~-----~gl~r~~F~p-----~I~~L~~~ 245 (438)
...|||||||+.+....+.+|++||+.....+ +.||+.||. -|..|.+ -+..+-.|.| +.++|+.+
T Consensus 869 ~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~R 948 (1164)
T PTZ00112 869 NVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKER 948 (1164)
T ss_pred cceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHH
Confidence 46799999999976556778999999876544 356678874 2334332 1222344555 46667666
Q ss_pred ccc
Q psy318 246 CDV 248 (438)
Q Consensus 246 ~~v 248 (438)
...
T Consensus 949 Ae~ 951 (1164)
T PTZ00112 949 LEN 951 (1164)
T ss_pred HHh
Confidence 553
No 82
>KOG0737|consensus
Probab=98.06 E-value=1.4e-05 Score=82.10 Aligned_cols=27 Identities=41% Similarity=0.792 Sum_probs=24.4
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.+|+|++||||||||||||+.+.....
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea 151 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA 151 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc
Confidence 478999999999999999999997655
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.06 E-value=3.1e-05 Score=86.63 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=22.0
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..++||||+|+|||+|+.++++.+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 84
>PHA02244 ATPase-like protein
Probab=98.05 E-value=1.5e-05 Score=82.61 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=44.3
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCC-CcCCcccHHHHHHhhc
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGL-QRSNFLPFIDVLKTYC 246 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl-~r~~F~p~I~~L~~~~ 246 (438)
+.+..+|+||||+...+.-+..|..++.... ..+..+|+|+|.+...+... + .+. .+-+.+..++
T Consensus 178 ~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~-y~G~k---~L~~AllDRF 253 (383)
T PHA02244 178 FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHI-YVARN---KIDGATLDRF 253 (383)
T ss_pred hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccc-cCCCc---ccCHHHHhhc
Confidence 3578999999999988766666666664321 13458999999987665321 1 111 1123444555
Q ss_pred cccccc
Q psy318 247 DVASLN 252 (438)
Q Consensus 247 ~vv~ld 252 (438)
.+|.++
T Consensus 254 v~I~~d 259 (383)
T PHA02244 254 APIEFD 259 (383)
T ss_pred EEeeCC
Confidence 566666
No 85
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.05 E-value=2.9e-05 Score=81.27 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+..++||||+|+|||+|+.++...+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998866
No 86
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.03 E-value=9.8e-06 Score=69.75 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=20.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+-++|+|++|+|||+++..+...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 35699999999999999999998874
No 87
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=1.8e-05 Score=84.64 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|.+++||||||+|||+++.+|...+.
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456799999999999999999998874
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.02 E-value=2.2e-05 Score=87.92 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=68.2
Q ss_pred CCCCc-eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318 63 KQPKG-LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE 141 (438)
Q Consensus 63 ~~pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (438)
..|.| ++++||+|+|||+|+.++...+. ..-.|+...+|+..- .+..+-+.. +| ...
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-~~~~~~d~se~~~~~--~~~~lig~~---------~g---yvg------- 538 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALG-VHLERFDMSEYMEKH--TVSRLIGAP---------PG---YVG------- 538 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhc-CCeEEEeCchhhhcc--cHHHHhcCC---------CC---Ccc-------
Confidence 34665 78999999999999999999884 234566655555421 111111110 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHH-hhcCCeEEEecCCCCChhhHHHHHHHHHHHH----------HC
Q psy318 142 KEREREREREREREREREREREAKSYDPIPPVANDI-ISKTWLICFDEFQVTDIADAMILKRLFTELF----------QL 210 (438)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~-~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~ 210 (438)
.+....+...+ .....+|+|||++..++.-+..|.++++.-. -+
T Consensus 539 -------------------------~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 539 -------------------------FEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred -------------------------cchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCC
Confidence 00000111111 1356899999999988765556666665421 02
Q ss_pred CCEEEEecCCChhhhhc
Q psy318 211 GVVVVATSNRAPDDLYK 227 (438)
Q Consensus 211 g~~lV~TSN~~P~~L~~ 227 (438)
.+.+|+|||..-..+.+
T Consensus 594 ~~iii~Tsn~g~~~~~~ 610 (731)
T TIGR02639 594 NVILIMTSNAGASEMSK 610 (731)
T ss_pred CCEEEECCCcchhhhhh
Confidence 34689999997666654
No 89
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.02 E-value=1.5e-05 Score=82.83 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.8
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.....||||||+|||.|+.++..+..
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhC
Confidence 45699999999999999999988663
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.98 E-value=1.8e-05 Score=88.98 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=29.4
Q ss_pred CCC-ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318 64 QPK-GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM 103 (438)
Q Consensus 64 ~pk-GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm 103 (438)
.|. .++|+||+|+|||.|+.++...+. ..-.|++..+|+
T Consensus 486 kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-~~~i~id~se~~ 525 (758)
T PRK11034 486 KPVGSFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEYM 525 (758)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhC-CCcEEeechhhc
Confidence 344 489999999999999999988884 234566655554
No 91
>PHA00729 NTP-binding motif containing protein
Probab=97.96 E-value=4.4e-05 Score=74.26 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.9
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..++|+|+||+|||||+.++...+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999999999998876
No 92
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.96 E-value=3.6e-05 Score=71.02 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=73.5
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERE 145 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (438)
+.+|+++|.|||+++-...-.+. .+..|+.|-+||.-- ......++.- +.-.-+..+.+-.+.. .+ ......
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~-~~g~~v~~vQFlKg~~~~gE~~~l~~l---~~v~~~~~g~~~~~~~-~~-~~~~~~ 78 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRAL-GHGYRVGVVQFLKGGWKYGELKALERL---PNIEIHRMGRGFFWTT-EN-DEEDIA 78 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEEeCCCCccCHHHHHHhC---CCcEEEECCCCCccCC-CC-hHHHHH
Confidence 67999999999999888766654 457899999998762 1111111110 0000000111100000 00 000000
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 146 REREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 146 ~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+++.+ ..|++.+ .++|+|+|||+... ..-+...+..+++...+ +.-||+|+..
T Consensus 79 ~a~~~~--------------------~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~-~~evIlTGr~ 137 (159)
T cd00561 79 AAAEGW--------------------AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPE-DLELVLTGRN 137 (159)
T ss_pred HHHHHH--------------------HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCC-CCEEEEECCC
Confidence 111111 1133333 46899999999973 23344556777776554 4689999999
Q ss_pred Chhhhhc
Q psy318 221 APDDLYK 227 (438)
Q Consensus 221 ~P~~L~~ 227 (438)
+|.+|-.
T Consensus 138 ~p~~l~e 144 (159)
T cd00561 138 APKELIE 144 (159)
T ss_pred CCHHHHH
Confidence 9998865
No 93
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=8e-05 Score=76.79 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...+.. ...|..++|+||+|+|||+++.++...+.
T Consensus 20 Gq~~~~~~l~~~~~~------------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSL------------------GRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHc------------------CCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 688888877665431 13456789999999999999999998874
No 94
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.88 E-value=6e-05 Score=75.33 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+++|+||||||||+++.+++..+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999988887763
No 95
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.87 E-value=3.4e-05 Score=87.03 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=26.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
+.++||||||+|||+|+.++...+..+ ..|+.+
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~-~~~i~~ 380 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRK-FVRFSL 380 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCC-eEEEeC
Confidence 469999999999999999999988432 334443
No 96
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00011 Score=76.84 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|.+++..|.+....=..+.. .+ ....|.+++||||+|+|||.++.+|...+-
T Consensus 9 Gq~~~~~~L~~~i~~~~~~~~-------~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 9 GQEAVVAELRAAARAARADVA-------AA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred ChHHHHHHHHHHHHhcccccc-------cc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 588889888887654211100 01 123578899999999999999999988773
No 97
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.85 E-value=3.4e-06 Score=74.10 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLD 105 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~ 105 (438)
+|+|+|++|+|||.|+..++..+. ..-.+++.|..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~-~~~~~i~~~~~~~~ 38 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG-RPVIRINCSSDTTE 38 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT-CEEEEEE-TTTSTH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh-cceEEEEecccccc
Confidence 589999999999999999999883 33456677665543
No 98
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.84 E-value=8e-05 Score=65.25 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=28.8
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV 106 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v 106 (438)
+.|+|++|+|||+++..+...+.. +..++-|..+....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcch
Confidence 578999999999999999887754 45667676554443
No 99
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00011 Score=78.44 Aligned_cols=45 Identities=27% Similarity=0.348 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|..++..|...... ...+..++||||+|+|||.++.+|...+.
T Consensus 21 VGQe~iv~~L~~~i~~------------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 21 IHQDLAIGALQNALKS------------------GKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred hChHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3688888777665431 12356799999999999999999998885
No 100
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.81 E-value=0.00018 Score=67.94 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH
Q psy318 25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML 104 (438)
Q Consensus 25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~ 104 (438)
++++.|++|+..+-. ...+-.+|.|++|+|||++|..+...+... +.++.+-.+..
T Consensus 1 ~L~~~Q~~a~~~~l~-----------------------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~~v~~~apT~ 56 (196)
T PF13604_consen 1 TLNEEQREAVRAILT-----------------------SGDRVSVLQGPAGTGKTTLLKALAEALEAA-GKRVIGLAPTN 56 (196)
T ss_dssp -S-HHHHHHHHHHHH-----------------------CTCSEEEEEESTTSTHHHHHHHHHHHHHHT-T--EEEEESSH
T ss_pred CCCHHHHHHHHHHHh-----------------------cCCeEEEEEECCCCCHHHHHHHHHHHHHhC-CCeEEEECCcH
Confidence 368899998876421 112458899999999999999998888643 57888866665
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCchHHHHHHhhcC
Q psy318 105 DVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAK---SYDPIPPVANDIISKT 181 (438)
Q Consensus 105 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~d~i~~va~~~~~~~ 181 (438)
.....|.+.-.... .. +. ........ ...+- ....
T Consensus 57 ~Aa~~L~~~~~~~a---~T---------i~-----------------------~~l~~~~~~~~~~~~~-------~~~~ 94 (196)
T PF13604_consen 57 KAAKELREKTGIEA---QT---------IH-----------------------SFLYRIPNGDDEGRPE-------LPKK 94 (196)
T ss_dssp HHHHHHHHHHTS-E---EE---------HH-----------------------HHTTEECCEECCSSCC--------TST
T ss_pred HHHHHHHHhhCcch---hh---------HH-----------------------HHHhcCCccccccccc-------CCcc
Confidence 55544443311100 00 00 00000000 00000 3567
Q ss_pred CeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcc-ccccccccchhcc
Q psy318 182 WLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD-VASLNSNIDYRSL 260 (438)
Q Consensus 182 ~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~-vv~ld~g~DyR~~ 260 (438)
++|++||....+... +..|+......|..+|+.++. .+|.+-+-. .....+.+... .+.|. .-+|..
T Consensus 95 ~vliVDEasmv~~~~---~~~ll~~~~~~~~klilvGD~--~QL~pV~~g-----~~~~~l~~~~~~~~~L~--~i~Rq~ 162 (196)
T PF13604_consen 95 DVLIVDEASMVDSRQ---LARLLRLAKKSGAKLILVGDP--NQLPPVGAG-----SPFADLQESGGITVELT--EIRRQK 162 (196)
T ss_dssp SEEEESSGGG-BHHH---HHHHHHHS-T-T-EEEEEE-T--TSHHHCSTT-----CHHHHHCGCSTTEEEE-----SCCC
T ss_pred cEEEEecccccCHHH---HHHHHHHHHhcCCEEEEECCc--chhcCCcCC-----cHHHHHHhcCCCeEEeC--hhhcCC
Confidence 899999999988654 445555555668889988874 566654321 12334444444 67776 446654
No 101
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.79 E-value=0.00012 Score=67.88 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=70.9
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccc--eeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQK--QRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE 141 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k--~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (438)
.+..|+|+|++||||++++.++++..+.+.+ ..++...+-.+... .++-+.. ...+ .+.
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e--~~LFG~~----~~~~-~~~------------ 81 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLE--SELFGHE----KGAF-TGA------------ 81 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHH--HHHHEBC----SSSS-TTT------------
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhh--hhhhccc----cccc-ccc------------
Confidence 4578999999999999999999887654333 34444444333211 1121110 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCC
Q psy318 142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELF----------QLG 211 (438)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g 211 (438)
..+-. ..--..+--.|+||||+.+...-+..|.++++.-. ...
T Consensus 82 ------------------------~~~~~---G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 82 ------------------------RSDKK---GLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp ------------------------SSEBE---HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred ------------------------ccccC---CceeeccceEEeecchhhhHHHHHHHHHHHHhhchhcccccccccccc
Confidence 00000 11111356799999999999888887777776421 113
Q ss_pred CEEEEecCCChhhhhcCCCCcC
Q psy318 212 VVVVATSNRAPDDLYKNGLQRS 233 (438)
Q Consensus 212 ~~lV~TSN~~P~~L~~~gl~r~ 233 (438)
+.+|+|||.++.++-..|..|+
T Consensus 135 ~RiI~st~~~l~~~v~~g~fr~ 156 (168)
T PF00158_consen 135 VRIIASTSKDLEELVEQGRFRE 156 (168)
T ss_dssp EEEEEEESS-HHHHHHTTSS-H
T ss_pred ceEEeecCcCHHHHHHcCCChH
Confidence 5799999999999988776553
No 102
>PHA02774 E1; Provisional
Probab=97.77 E-value=0.00022 Score=77.63 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=54.0
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHC---------------CCEEEEecCCChhhhhcCCCCcCCcccHHHHHH
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQL---------------GVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLK 243 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~---------------g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~ 243 (438)
.+++++++||+- ...+..+--.|.+.|--. ..++|+|||..+..- +-..-|.
T Consensus 478 ~d~ki~vlDD~t--~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~-----------~~~~yL~ 544 (613)
T PHA02774 478 ADAKIALLDDAT--HPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAE-----------DRYKYLH 544 (613)
T ss_pred ccCCEEEEecCc--chHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccc-----------hhhHHhh
Confidence 478999999992 223332222222222111 157999999765541 1234466
Q ss_pred hhccccccccccchhccccccccCCCceeecCchhHHHHHHHHHHHHcCC
Q psy318 244 TYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKLHGIFKLLCSQ 293 (438)
Q Consensus 244 ~~~~vv~ld~g~DyR~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~ 293 (438)
.+..+++....- =. ...+...|.++...-...+.++|.+|--.
T Consensus 545 sRi~~f~F~n~~--P~-----d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 545 SRITVFEFPNPF--PL-----DENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred hhEEEEECCCCC--Cc-----CCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 666666665221 11 01244566666657788899999988643
No 103
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.77 E-value=0.00026 Score=80.80 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=34.5
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHH--HH--------CCCEEEEecCCChhhhhc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTEL--FQ--------LGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l--~~--------~g~~lV~TSN~~P~~L~~ 227 (438)
...+|+|||++..++.-+..|+++++.- .+ +...+|+|||..+..|..
T Consensus 670 p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~ 727 (857)
T PRK10865 670 PYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQE 727 (857)
T ss_pred CCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHH
Confidence 4589999999998877667777777542 11 223589999998776654
No 104
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.75 E-value=0.0001 Score=84.18 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=30.6
Q ss_pred cCCeEEEecCCCCChh----hHHHHHHHHHHHHHCC-CEEEEecCCChh
Q psy318 180 KTWLICFDEFQVTDIA----DAMILKRLFTELFQLG-VVVVATSNRAPD 223 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~----da~iL~~Lfn~l~~~g-~~lV~TSN~~P~ 223 (438)
...+|+|||+|.+..+ ..+-..+++.-..++| ..+|+|++..+-
T Consensus 271 ~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 271 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred CCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 4679999999986422 2334456666666777 578888888764
No 105
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.73 E-value=0.00043 Score=67.19 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.3
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.|+|++|+|||+|+..+++.+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcC
Confidence 77999999999999999998875
No 106
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.73 E-value=0.00022 Score=63.15 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=38.9
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~g 229 (438)
..-.|+|+|++.++...+..|.+++...-....++|+||..++.++...|
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~ 118 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEG 118 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHS
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhcc
Confidence 56789999999999888888877777644456899999999999877644
No 107
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.72 E-value=0.00015 Score=71.17 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.+.+++||||||||||+|+.+++..+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998765
No 108
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.71 E-value=0.00022 Score=80.12 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=34.2
Q ss_pred hccCEEEEcCCCCCCcCCchHHHHHHHHHHHhh----------hCCCeEEEEeCCChhhhc
Q psy318 342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDALY----------DNNIRLVISSDVPLNKLF 392 (438)
Q Consensus 342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lY----------d~~vkL~~~a~~~~~~Lf 392 (438)
..|.+|++++|-.+ +.+...-|..++|.-+ =.++-+|+++...-+.+.
T Consensus 552 ~p~~VvllDEieka---~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~ 609 (731)
T TIGR02639 552 HPHCVLLLDEIEKA---HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMS 609 (731)
T ss_pred CCCeEEEEechhhc---CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhh
Confidence 46889999999876 5677778888888631 135668888876655443
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00017 Score=74.01 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.5
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|++++||||+|+|||+++.++...+.
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999988774
No 110
>PF13173 AAA_14: AAA domain
Probab=97.69 E-value=0.00022 Score=62.35 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+-+.|+|+-|+|||+||.-++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999987764
No 111
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=0.00027 Score=63.60 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=72.6
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh-hHHH-HHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF-MLDV-HAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE 141 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f-m~~v-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (438)
...=+.|.|+.|+|||.|++++...++. .+-++.|+.- +... .... .... ++.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~~~~~~~~~~---~~~i------~~~~q------------- 80 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKDIAKLPLEEL---RRRI------GYVPQ------------- 80 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccCCHHHH---Hhce------EEEee-------------
Confidence 3456889999999999999999887753 4556666541 1110 0010 0000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+..=+++| -.++..++.+++++|+||... +|......+.+++..+...+..+|++|+.
T Consensus 81 ---lS~G~~~r------------------~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 81 ---LSGGQRQR------------------VALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred ---CCHHHHHH------------------HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 00000011 236888899999999999997 68877788889999887777778888776
Q ss_pred C
Q psy318 221 A 221 (438)
Q Consensus 221 ~ 221 (438)
.
T Consensus 140 ~ 140 (157)
T cd00267 140 P 140 (157)
T ss_pred H
Confidence 3
No 112
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.0002 Score=80.03 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..+++.|.+.++ ....+..++|||+.|+|||.++.+|...+.
T Consensus 20 GQe~Vv~~L~~aL~------------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 20 GQEHVVRALTHALD------------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CcHHHHHHHHHHHh------------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57777777766532 113456789999999999999999988874
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.68 E-value=0.00016 Score=82.46 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=33.6
Q ss_pred hccCEEEEcCCCCCCcCCchHHHHHHHHHHHhh----------hCCCeEEEEeCCChhhh
Q psy318 342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDALY----------DNNIRLVISSDVPLNKL 391 (438)
Q Consensus 342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lY----------d~~vkL~~~a~~~~~~L 391 (438)
..+.+|++++|-.+ +.+....|..++|.=. =+++-+|+++....+.+
T Consensus 666 ~p~~vlllDeieka---~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~ 722 (852)
T TIGR03346 666 KPYSVVLFDEVEKA---HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFI 722 (852)
T ss_pred CCCcEEEEeccccC---CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhH
Confidence 45779999999765 6677777777777531 14566999999866644
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00038 Score=78.46 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=34.3
Q ss_pred hccCEEEEcCCCCCCcCCchHHHHHHHHHHHh--hh--------CCCeEEEEeCCChhhhc
Q psy318 342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDAL--YD--------NNIRLVISSDVPLNKLF 392 (438)
Q Consensus 342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~l--Yd--------~~vkL~~~a~~~~~~Lf 392 (438)
..+.+|++++|-.+ +.+....|..++|.= .| +++-+|+++....+.+.
T Consensus 556 ~p~sVlllDEieka---~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~ 613 (758)
T PRK11034 556 HPHAVLLLDEIEKA---HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 613 (758)
T ss_pred CCCcEEEeccHhhh---hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHh
Confidence 45789999999887 456677888888843 22 35568888887766543
No 115
>KOG0743|consensus
Probab=97.67 E-value=5.5e-05 Score=79.53 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=25.6
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+-.+|-+||||||||||.+..|.++.+.
T Consensus 232 kawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 232 KAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred cchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 34568999999999999999999999883
No 116
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.66 E-value=0.00046 Score=63.02 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+..++..+.++|..+|++|...
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46889999999999999986 788888888899988877787777877764
No 117
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00034 Score=77.26 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|.+.+.. ...+..++|+|++|+|||+|+.+|...+.
T Consensus 20 GQe~vv~~L~~al~~------------------gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 20 GQEHVVRALTHALEQ------------------QRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred CcHHHHHHHHHHHHh------------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 577777777665432 23457789999999999999999998885
No 118
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00025 Score=80.57 Aligned_cols=45 Identities=22% Similarity=0.337 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
.|..++..|.+.... ...+.-++||||+|+|||+++.+|...+..
T Consensus 20 GQe~Iv~~LknaI~~------------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 20 GQSHVLHALTNALTQ------------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CcHHHHHHHHHHHHh------------------CCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 677777777665421 133555689999999999999999998853
No 119
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.65 E-value=0.00061 Score=64.98 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSN 219 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN 219 (438)
.+|+.+..++.+|+-||--- +|+.-+..+.+||+.+...|..||+++.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATH 195 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEec
Confidence 47899999999999999765 7998899999999999999987776654
No 120
>KOG0744|consensus
Probab=97.64 E-value=4.4e-05 Score=77.57 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=33.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVK 114 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~ 114 (438)
.+=++||||||+|||.|..++...+++.---|. ++.-|.++ |+...++-
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y-~~~~liEinshsLFSKWF 227 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY-YKGQLIEINSHSLFSKWF 227 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCcc-ccceEEEEehhHHHHHHH
Confidence 477999999999999999999999976533232 33334444 33344443
No 121
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.00041 Score=77.13 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...+.. ...+.+++|+|++|+|||+++.+|...+.
T Consensus 20 GQe~vv~~L~~ai~~------------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 20 GQEHVVKALQNALDE------------------GRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 577777777665431 23467899999999999999999988874
No 122
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.62 E-value=0.00012 Score=78.29 Aligned_cols=28 Identities=11% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+...++|+|+||+|||+|+.++...+.
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 3567899999999999999999988764
No 123
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.61 E-value=9.8e-05 Score=68.62 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=27.0
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhc-c--cceeeechhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCET-K--QKQRVHFNKFM 103 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~-~--~k~R~Hf~~fm 103 (438)
.++|.||.|+|||.|+.++...+-. . .-.++-..+|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 4889999999999999999998863 2 23444444443
No 124
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00062 Score=76.40 Aligned_cols=119 Identities=17% Similarity=0.304 Sum_probs=71.9
Q ss_pred cCCCCCceEE-EccCCCCHhHHHHHHHHhhh--cccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccch
Q psy318 61 KVKQPKGLYI-YGAVGGGKTMLMDIFYESCE--TKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMK 137 (438)
Q Consensus 61 ~~~~pkGlyL-~G~vG~GKT~Lmd~f~~~l~--~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (438)
.+..|-|.+| -||+|+|||-|+.++...+- .....|+-..+||..- .+.++-+. |++-.
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH--sVSrLIGa-------------PPGYV--- 577 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH--SVSRLIGA-------------PPGYV--- 577 (786)
T ss_pred CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH--HHHHHhCC-------------CCCCc---
Confidence 3455666555 99999999999999999983 2445677767776542 23333322 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCC------
Q psy318 138 EEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLG------ 211 (438)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g------ 211 (438)
|- .+.--+....++ +-+.||+||||+.-++. ++++|-+.++.|
T Consensus 578 -----------------------Gy--eeGG~LTEaVRr--~PySViLlDEIEKAHpd----V~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 578 -----------------------GY--EEGGQLTEAVRR--KPYSVILLDEIEKAHPD----VFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred -----------------------ee--ccccchhHhhhc--CCCeEEEechhhhcCHH----HHHHHHHHhcCCeeecCC
Confidence 00 000011111111 23789999999997765 556665555433
Q ss_pred --------CEEEEecCCChhhhhcC
Q psy318 212 --------VVVVATSNRAPDDLYKN 228 (438)
Q Consensus 212 --------~~lV~TSN~~P~~L~~~ 228 (438)
..+|+|||.--..+..+
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhh
Confidence 35889999987777665
No 125
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00034 Score=70.19 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
-.|.++.++|+-+.+.-+. ...+.--++||||||.|||.|+..+.+.+.+
T Consensus 29 iGQ~~vk~~L~ifI~AAk~--------------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKK--------------RGEALDHVLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred cChHHHHHHHHHHHHHHHh--------------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence 4699999999888766542 2345678999999999999999999998854
No 126
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.60 E-value=0.00058 Score=77.97 Aligned_cols=48 Identities=17% Similarity=0.137 Sum_probs=35.1
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~ 227 (438)
...+|+||||+..++.-+..|.++++.-. -+.+.+|+|||.....+..
T Consensus 667 p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~ 724 (852)
T TIGR03346 667 PYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQE 724 (852)
T ss_pred CCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhh
Confidence 45799999999988776666777775421 1335699999998776654
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.59 E-value=0.00054 Score=77.95 Aligned_cols=118 Identities=15% Similarity=0.190 Sum_probs=67.2
Q ss_pred CCCCc-eEEEccCCCCHhHHHHHHHHhhh--cccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHH
Q psy318 63 KQPKG-LYIYGAVGGGKTMLMDIFYESCE--TKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEE 139 (438)
Q Consensus 63 ~~pkG-lyL~G~vG~GKT~Lmd~f~~~l~--~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (438)
..|.| ++++||+|+|||.|+.++...+- ...-.|+...+|+..- .+.++-+. |+...
T Consensus 536 ~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~--~~~~l~g~-------------~~gyv----- 595 (821)
T CHL00095 536 NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKH--TVSKLIGS-------------PPGYV----- 595 (821)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccc--cHHHhcCC-------------CCccc-----
Confidence 44555 67999999999999999998873 2334555555554321 11111110 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh-hcCCeEEEecCCCCChhhHHHHHHHHHHHH----------
Q psy318 140 EEKEREREREREREREREREREREAKSYDPIPPVANDII-SKTWLICFDEFQVTDIADAMILKRLFTELF---------- 208 (438)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~-~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~---------- 208 (438)
| .+....+...+. ....||+|||++..++.-...|.++++.-.
T Consensus 596 ---------------------g-----~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~ 649 (821)
T CHL00095 596 ---------------------G-----YNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTID 649 (821)
T ss_pred ---------------------C-----cCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEe
Confidence 0 011111122221 235899999999988765566666666411
Q ss_pred HCCCEEEEecCCChhhhh
Q psy318 209 QLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 209 ~~g~~lV~TSN~~P~~L~ 226 (438)
-....+|+|||.....+.
T Consensus 650 ~~~~i~I~Tsn~g~~~i~ 667 (821)
T CHL00095 650 FKNTLIIMTSNLGSKVIE 667 (821)
T ss_pred cCceEEEEeCCcchHHHH
Confidence 133568999999765443
No 128
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00066 Score=62.33 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=75.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH-HHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML-DVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK 142 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~-~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (438)
...-+.|.|+.|+|||.|++++..-++ +..-+++|+.--. .... ..+..- ++.+.-+.....+.- .+-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~---~~~~~i------~~~~q~~~~~~~~tv-~~~ 93 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPE---EVKRRI------GYLPEEPSLYENLTV-REN 93 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchH---hhhccE------EEEecCCccccCCcH-HHH
Confidence 345589999999999999999987664 2344566643211 1000 111100 011111111111110 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 143 EREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
..+..-+++| -.+|+.++.++++|++||--. +|......+.+++..+.++|..+|++|..+
T Consensus 94 ~~LS~G~~qr------------------v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 94 LKLSGGMKQR------------------LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred hhcCHHHHHH------------------HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 0011112221 246899999999999999987 688888889999999987777777777664
No 129
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.58 E-value=0.00024 Score=65.88 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.6
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|..++|||++|+|||.++..|...+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3467799999999999999999988874
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.57 E-value=0.00044 Score=69.33 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.7
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..++|+||||||||+++.+++..+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999999999998876
No 131
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.00057 Score=75.66 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+..++|+||+|+|||.++.+|..++.
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999998874
No 132
>PRK04296 thymidine kinase; Provisional
Probab=97.55 E-value=0.00022 Score=66.98 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=29.9
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+.++|++||+|..+..+ +..+++.+...|+.+|+|+-.
T Consensus 78 ~~dvviIDEaq~l~~~~---v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQ---VVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CCCEEEEEccccCCHHH---HHHHHHHHHHcCCeEEEEecC
Confidence 68999999999876432 456788888899989888544
No 133
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.55 E-value=0.00057 Score=62.48 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=32.3
Q ss_pred hcCCeEEEecCCCC-C---hhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 179 SKTWLICFDEFQVT-D---IADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 179 ~~~~lLc~DEf~v~-d---~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
.++++|++|++... + ......+.+++..+...|+.+|++++...
T Consensus 94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 46899999999974 3 22234567788888888988888877643
No 134
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.53 E-value=0.00053 Score=69.34 Aligned_cols=45 Identities=29% Similarity=0.382 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|.+++..|...... ...|+.++||||+|+|||.++.++...+.
T Consensus 17 ig~~~~~~~l~~~~~~------------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 17 IGQEHIVQTLKNAIKN------------------GRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cCcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4677777777764321 12356789999999999999999998874
No 135
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.53 E-value=0.00065 Score=62.74 Aligned_cols=50 Identities=24% Similarity=0.250 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+..+ |..+|++|...
T Consensus 107 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46889999999999999986 7887778888999988776 77777787764
No 136
>PF05729 NACHT: NACHT domain
Probab=97.52 E-value=0.00056 Score=60.44 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=28.8
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhccc----ceeeechhhhHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQ----KQRVHFNKFMLDVH 107 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~----k~R~Hf~~fm~~v~ 107 (438)
=++|+|++|+|||++|..+...+.... +..+.|.-++....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDIS 46 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhh
Confidence 378999999999999999998884322 12455544444444
No 137
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00033 Score=69.30 Aligned_cols=48 Identities=25% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSN 219 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN 219 (438)
-+|+.++.++++|++||-.. +|+..+..+..|+..+.+.|+.|++.+.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtH 197 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 36899999999999999877 7999999999999999999876666553
No 138
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.50 E-value=0.00075 Score=60.49 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|......+..++..+ +..++++|+..
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~ 127 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR 127 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH
Confidence 35889999999999999886 6777666677777655 45667777663
No 139
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.49 E-value=0.00033 Score=65.51 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCC-CEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLG-VVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g-~~lV~TSN~ 220 (438)
.+|+.++.+++++++||-.. +|+.....+..++..+..++ ..+|++|..
T Consensus 81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46889999999999999986 68887778888888887665 667777765
No 140
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0009 Score=72.24 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...... ...|.-++||||+|+|||.++.+|+..+.
T Consensus 18 Gq~~v~~~L~~~i~~------------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 18 GQEHVKEVLLAALRQ------------------GRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred ChHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 577777777665432 12345679999999999999999998884
No 141
>KOG2028|consensus
Probab=97.49 E-value=0.00028 Score=72.86 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=23.1
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.-..+.||||||+|||.|+.++..+..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcC
Confidence 345799999999999999999987653
No 142
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.00078 Score=72.76 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|..++..|...... ...+..++|+||+|+|||+++.+|+..+.
T Consensus 24 iGq~~vv~~L~~ai~~------------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 24 QGQEVLVKVLSYTILN------------------DRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred cCcHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4788888877764321 23467899999999999999999999884
No 143
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.47 E-value=0.00055 Score=63.93 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=41.8
Q ss_pred HHHHHHhhc--CCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISK--TWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~--~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.+ +++|++||--. +|......+.+++..+.+.|..+|++|...
T Consensus 97 ~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 368889999 99999999987 688878888888888877788888877764
No 144
>KOG0740|consensus
Probab=97.46 E-value=0.00018 Score=75.78 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=25.0
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.+.++|++|.||+|+|||||..+++..+
T Consensus 183 r~p~rglLLfGPpgtGKtmL~~aiAsE~ 210 (428)
T KOG0740|consen 183 REPVRGLLLFGPPGTGKTMLAKAIATES 210 (428)
T ss_pred ccccchhheecCCCCchHHHHHHHHhhh
Confidence 4567999999999999999999997765
No 145
>PRK13695 putative NTPase; Provisional
Probab=97.45 E-value=0.0012 Score=60.67 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=35.6
Q ss_pred HHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 174 ANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 174 a~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
+...+.++++|++||++..+..+ ..+..++..+.+.|..+|+|+|..
T Consensus 90 ~~~~l~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 90 LERALEEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred HHhccCCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECch
Confidence 44455689999999998765444 445677777778899999999973
No 146
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.42 E-value=0.0016 Score=59.90 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+.+++..+. ++..+|++|+..
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~ 157 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL 157 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence 46899999999999999987 78887788888888874 567777777654
No 147
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.0021 Score=60.04 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..+.
T Consensus 118 ~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 118 TIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 46899999999999999987 6888888888899888777878888887753
No 148
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.42 E-value=0.0019 Score=59.28 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46889999999999999886 788888888889988877787777777764
No 149
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.00095 Score=72.69 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...+.. ...+..++||||+|+|||.++.+|...+.
T Consensus 20 Gq~~~v~~L~~~i~~------------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 20 GQQHALNSLVHALET------------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 677877776665431 12356688999999999999999998774
No 150
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.00039 Score=78.98 Aligned_cols=44 Identities=25% Similarity=0.263 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|.+.+.. ...+..++|||+.|+|||.++.+|...+.
T Consensus 19 Gqe~v~~~L~~~i~~------------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 19 GQEHVTEPLSTALDS------------------GRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CcHHHHHHHHHHHHh------------------CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 577777776665431 13456789999999999999999988884
No 151
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0016 Score=71.75 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|.+.... ...+..++||||+|+|||.++.+|...+-
T Consensus 20 GQe~v~~~L~~ai~~------------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 20 GQETVKAILSRAAQE------------------NRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 567777766665431 12345788999999999999999998884
No 152
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.00064 Score=70.98 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|.+..+. ...|..+++|||+|+|||.++-+|...+.
T Consensus 20 Gq~~~~~~L~~~~~~------------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 20 AQEHITRTIQNSLRM------------------GRVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred ChHHHHHHHHHHHHh------------------CCcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 577887777665431 23467899999999999999999988884
No 153
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.0011 Score=61.08 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus 110 ~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46899999999999999987 7888888899999998876 67777777653
No 154
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.39 E-value=0.00045 Score=70.07 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=36.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVH 107 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~ 107 (438)
....++|-|+||+|||+|+..+...+. ..-.|+.|+..+.--.
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~-~~~~~i~~t~~l~p~d 84 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALG-LPFVRIQCTPDLLPSD 84 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhC-CCeEEEecCCCCCHHH
Confidence 356899999999999999999999986 3468999998876553
No 155
>KOG0989|consensus
Probab=97.38 E-value=0.00093 Score=67.64 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=40.4
Q ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
.-..+.....|..+++.|-.-..+ ..-..+++|||||+|||.-+-+|..++..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~-------------------~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR-------------------RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh-------------------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 345677788999999887764332 11235899999999999999999998854
No 156
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.38 E-value=0.0019 Score=62.06 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=30.0
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHH-hhhcccceeeechhhh
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYE-SCETKQKQRVHFNKFM 103 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~-~l~~~~k~R~Hf~~fm 103 (438)
..+.+.-++|+|++|+|||+|+..|.. .+. ...++-|-.+-
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e 62 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTE 62 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcC
Confidence 345667799999999999999999944 443 35566665553
No 157
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.37 E-value=0.0013 Score=61.42 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=35.4
Q ss_pred hcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
..++++|+||... .|......+.+++..+...|..+|++|..+
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 5799999999997 687777778888888877777888888774
No 158
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.37 E-value=0.0016 Score=73.40 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=80.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 22 NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 22 g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
..+.+++.|++|+..+-. ..+=..|.|++|+|||+++.++...+.. ...++++-.
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~------------------------s~~~~il~G~aGTGKTtll~~i~~~~~~-~g~~V~~~A 403 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTG------------------------SGDIAVVVGRAGTGKSTMLKAAREAWEA-AGYRVIGAA 403 (744)
T ss_pred ccCCCCHHHHHHHHHHhc------------------------CCCEEEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEEe
Confidence 346678888887764311 0134789999999999999999887753 356777755
Q ss_pred hhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcC
Q psy318 102 FMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKT 181 (438)
Q Consensus 102 fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~ 181 (438)
.-....++|.+..... +. ++ +.++ .+.. ... ..+...
T Consensus 404 pTg~Aa~~L~~~~g~~----a~--------Ti--------~~~~-----------~~~~----~~~--------~~~~~~ 440 (744)
T TIGR02768 404 LSGKAAEGLQAESGIE----SR--------TL--------ASLE-----------YAWA----NGR--------DLLSDK 440 (744)
T ss_pred CcHHHHHHHHhccCCc----ee--------eH--------HHHH-----------hhhc----cCc--------ccCCCC
Confidence 5444444443211100 00 00 0000 0000 000 113578
Q ss_pred CeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcC
Q psy318 182 WLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKN 228 (438)
Q Consensus 182 ~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~ 228 (438)
+||++||+..++... +..|+......|..||+-+. |.+|.+-
T Consensus 441 ~llIvDEasMv~~~~---~~~Ll~~~~~~~~kliLVGD--~~QLpsV 482 (744)
T TIGR02768 441 DVLVIDEAGMVGSRQ---MARVLKEAEEAGAKVVLVGD--PEQLQPI 482 (744)
T ss_pred cEEEEECcccCCHHH---HHHHHHHHHhcCCEEEEECC--hHHcccc
Confidence 999999999998543 45677766678888888885 4666653
No 159
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.37 E-value=0.0017 Score=60.10 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+...|..+|++|...
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999887 688888888899998877777788887763
No 160
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.00068 Score=72.16 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...+.. ...|..++||||+|+|||.++.+|...+.
T Consensus 21 Gq~~~v~~L~~~i~~------------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 21 GQDAVVAVLKNALRF------------------NRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CcHHHHHHHHHHHHc------------------CCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 577777766654421 13456788999999999999999998873
No 161
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.0013 Score=72.84 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
.|..++..|.+.+.. ...+..++|||++|+|||.++.+|...+..
T Consensus 20 GQe~vv~~L~~~l~~------------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 20 GQEHVLTALANALDL------------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 688888877665432 123566789999999999999999888853
No 162
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.0012 Score=71.59 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=31.1
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
....|++|||.+......+..|...++.- ...+.+|+++|.+ ..+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEp-p~~t~FIL~ttd~-~kL~~ 162 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEP-PSYVKFILATTDP-LKLPA 162 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhc-CCceEEEEEECCh-hhCch
Confidence 35789999999998866555565555554 2345667777664 45443
No 163
>KOG0741|consensus
Probab=97.34 E-value=0.00055 Score=73.51 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=25.0
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+-.||++||||||||||.++.-+..-|.
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqIGkMLN 281 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQIGKMLN 281 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHHHHHhc
Confidence 4569999999999999999999988774
No 164
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.33 E-value=0.0027 Score=59.49 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
.+|+.++.++++|++||--. +|......+..++..+..+|..+|++|..++
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 46899999999999999987 6888778888999988777888888887754
No 165
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.32 E-value=0.0011 Score=75.68 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=38.4
Q ss_pred hccCEEEEcCCCCCCcCCchHHHHHHHHHHHhh----------hCCCeEEEEeCCChhhhcc
Q psy318 342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDALY----------DNNIRLVISSDVPLNKLFS 393 (438)
Q Consensus 342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~lY----------d~~vkL~~~a~~~~~~Lf~ 393 (438)
..|..|++++|-. .+.+...-|..++|.-| =.++-+|+++....+.+..
T Consensus 667 ~p~svvllDEiek---a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~ 725 (852)
T TIGR03345 667 KPYSVVLLDEVEK---AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMA 725 (852)
T ss_pred CCCcEEEEechhh---cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHH
Confidence 5688999999965 46677778889999876 2578889999988876654
No 166
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.32 E-value=0.0023 Score=67.70 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
...++.+.||+|+|||||..++...
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHH
Confidence 3478999999999999999998665
No 167
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0013 Score=68.01 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=39.4
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
....|++|||++..+...+..|..+++.--. +..+|+.|+. |..| +..|+.+|..+.+.
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~-~~~fiLit~~-~~~l-------------lptIrSRc~~i~l~ 198 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPA-RALFILISHS-SGRL-------------LPTIRSRCQPISLK 198 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCC-CceEEEEECC-hhhc-------------cHHHHhhccEEEec
Confidence 3578999999999988777767666665333 3444455544 3333 23567888888876
No 168
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0013 Score=71.39 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...+.. ...+..++||||+|+|||+++.+|...+.
T Consensus 20 Gq~~v~~~L~~~i~~------------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 20 GQEHVVRALTNALEQ------------------QRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 677777777665431 13456788999999999999999988874
No 169
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00065 Score=70.55 Aligned_cols=115 Identities=25% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhccccee-eec-----hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCC-cccc
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQR-VHF-----NKFMLDVHAKIHEVKKILARDKAKSYDPGVPN-RLDV 135 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R-~Hf-----~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 135 (438)
..|..+||||++|||||.++.-+...+....... +.| +.-+..+...+...-.+ +|. ++..
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~------------~p~~g~~~ 107 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGK------------VPLTGDSS 107 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC------------CCCCCCch
Confidence 3455699999999999999999999885443333 222 12233333333332111 111 1111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHH---hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCC-
Q psy318 136 MKEEEEKEREREREREREREREREREREAKSYDPIPPVANDI---ISKTWLICFDEFQVTDIADAMILKRLFTELFQLG- 211 (438)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~---~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g- 211 (438)
+ .+.....+. ....-++++||++.+...+...|+.|+..-....
T Consensus 108 ~--------------------------------~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~ 155 (366)
T COG1474 108 L--------------------------------EILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKV 155 (366)
T ss_pred H--------------------------------HHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccce
Confidence 1 011111111 2357899999999975554477888877654432
Q ss_pred -CEEEEecCCC
Q psy318 212 -VVVVATSNRA 221 (438)
Q Consensus 212 -~~lV~TSN~~ 221 (438)
+.+|+.+|-.
T Consensus 156 ~v~vi~i~n~~ 166 (366)
T COG1474 156 KVSIIAVSNDD 166 (366)
T ss_pred eEEEEEEeccH
Confidence 3577888875
No 170
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.30 E-value=0.00019 Score=56.27 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=28.0
Q ss_pred CCc--eEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 65 PKG--LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 65 pkG--lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
+.| .+|+|+.|+|||.||||+.-.+-.. . |.+|+.
T Consensus 21 ~~g~~tli~G~nGsGKSTllDAi~~~L~~~-~-~~~fN~ 57 (62)
T PF13555_consen 21 PRGDVTLITGPNGSGKSTLLDAIQTVLYGN-T-RRRFNA 57 (62)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHcCC-c-hhhhhh
Confidence 345 9999999999999999998777433 2 777765
No 171
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.001 Score=73.36 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|.+.+.. ...+..++|||+.|+|||+++.+|..++.
T Consensus 20 GQe~vv~~L~~~l~~------------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 20 GQEHVVQALTNALTQ------------------QRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 578888877776542 13456789999999999999999988774
No 172
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0017 Score=69.94 Aligned_cols=43 Identities=30% Similarity=0.409 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.|..++..|.+.+. ....|+.++|+||+|+|||.++.++..++
T Consensus 17 GQe~vv~~L~~a~~------------------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 17 GQDVLVRILRNAFT------------------LNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CcHHHHHHHHHHHH------------------cCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 57777776665432 12446889999999999999999998876
No 173
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.29 E-value=0.0012 Score=62.88 Aligned_cols=134 Identities=16% Similarity=0.073 Sum_probs=72.4
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHHHHhhhcccCCCCCCCC-CccccchHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVKKILARDKAKSYDPGVP-NRLDVMKEEEEK 142 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 142 (438)
--|.+||++|.|||+++-...-.+. .+..||.+-+||.-- ......++.-. .-.-...+.+ .|.. .+.. .
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~-g~G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~~~--~~~~-e 95 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAV-GHGKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTWET--QDRE-R 95 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCcccC--CCcH-H
Confidence 3589999999999999877765553 457899999999754 11222222100 0000001111 1111 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEe
Q psy318 143 EREREREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVAT 217 (438)
Q Consensus 143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~T 217 (438)
.....++. ...|++.+ .++++|+|||+-.. ..-+...+..+++. ...+.-||+|
T Consensus 96 ~~~~~~~~--------------------~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~-rp~~~evVlT 154 (191)
T PRK05986 96 DIAAAREG--------------------WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA-RPGMQHVVIT 154 (191)
T ss_pred HHHHHHHH--------------------HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc-CCCCCEEEEE
Confidence 00011111 11244443 56899999999862 11222234445543 2345689999
Q ss_pred cCCChhhhhc
Q psy318 218 SNRAPDDLYK 227 (438)
Q Consensus 218 SN~~P~~L~~ 227 (438)
+..+|.+|-.
T Consensus 155 GR~~p~~Lie 164 (191)
T PRK05986 155 GRGAPRELIE 164 (191)
T ss_pred CCCCCHHHHH
Confidence 9999998875
No 174
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.00099 Score=73.10 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...... ...+..++||||+|+|||.++.+|...+.
T Consensus 17 Gq~~i~~~L~~~i~~------------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 17 GQEHVTEPLSSALDA------------------GRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 577777766665421 13455678999999999999999998874
No 175
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.28 E-value=0.0026 Score=60.35 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=31.5
Q ss_pred cCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCCC
Q psy318 180 KTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 180 ~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
++++|++||... +|+.+.. ++..+++.+.+.|..+|++|...
T Consensus 105 ~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~ 148 (199)
T cd03283 105 EPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDL 148 (199)
T ss_pred CCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH
Confidence 789999999976 6766554 34557888877787777777763
No 176
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.28 E-value=0.00094 Score=62.55 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=69.7
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH--HHHHHHHHHHhhhcccCCCCCCCC-CccccchHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV--HAKIHEVKKILARDKAKSYDPGVP-NRLDVMKEEEEKER 144 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 144 (438)
+.+|+++|.|||+++-...-.+. .+..|+.+-+||.-- ......+..-.-.- ...+-+ .|.. .+.+...
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~-~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~----~~~g~g~~~~~---~~~~~~~ 79 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRAL-GHGKKVGVIQFIKGAWPNGERAAFEPHGVEF----QVMGTGFTWET---QNREADT 79 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCcccChHHHHHhcCcEE----EECCCCCeecC---CCcHHHH
Confidence 78999999999999877765553 457899998888753 11111111100000 000110 1111 0000000
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVATSN 219 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~TSN 219 (438)
...++.+ ..|++.+ .++|+|++||+-.. ..-+...+..+++.. ..+.-||+|+-
T Consensus 80 ~~~~~~~--------------------~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r-p~~~evVlTGR 138 (173)
T TIGR00708 80 AIAKAAW--------------------QHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER-PGHQHVIITGR 138 (173)
T ss_pred HHHHHHH--------------------HHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC-CCCCEEEEECC
Confidence 0111111 1144433 56899999999852 111122344566543 34568999999
Q ss_pred CChhhhhc
Q psy318 220 RAPDDLYK 227 (438)
Q Consensus 220 ~~P~~L~~ 227 (438)
.+|..|-.
T Consensus 139 ~~p~~l~e 146 (173)
T TIGR00708 139 GCPQDLLE 146 (173)
T ss_pred CCCHHHHH
Confidence 99998875
No 177
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0011 Score=72.72 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...+.. ...+..++|||++|+|||.++.+|...+.
T Consensus 20 Gq~~~~~~L~~~i~~------------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 20 GQEHVVQTLRNAIAE------------------GRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHHHHHHHHHHh------------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 577777766655431 12345678999999999999999998874
No 178
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.27 E-value=0.0027 Score=61.52 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=31.4
Q ss_pred hcCCeEEEecCCCC-----ChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQVT-----DIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v~-----d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+++++++||+... |+.....+.+++..+.+.|..+++|++..
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~ 163 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 36899999999862 33333456778887878888888898854
No 179
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0014 Score=71.87 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...... ...+..++||||+|+|||.++.+|...+.
T Consensus 20 Gq~~v~~~L~~~i~~------------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 20 GQEHVSRTLQNAIDT------------------GRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 577777666654321 13456788999999999999999998874
No 180
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.25 E-value=0.0016 Score=60.39 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=64.4
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeechh---hhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK---FMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~---fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
++|.|++|+|||.++..+...+. +..+|..+ +-.++.+++..++..++ ..|...
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~---~~~~~iat~~~~~~e~~~ri~~h~~~R~------------~~w~t~-------- 60 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSG---LQVLYIATAQPFDDEMAARIAHHRQRRP------------AHWQTV-------- 60 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcC---CCcEeCcCCCCChHHHHHHHHHHHhcCC------------CCCeEe--------
Confidence 79999999999999998876642 22233333 23345555544433321 111100
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC-------Ch-h-hHHHHHHHHHHHHHCCCEEE
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT-------DI-A-DAMILKRLFTELFQLGVVVV 215 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~-------d~-~-da~iL~~Lfn~l~~~g~~lV 215 (438)
...-.+..+......+..++++|-+... +. . ....+..+++.+.+.+..+|
T Consensus 61 --------------------E~~~~l~~~i~~~~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvV 120 (170)
T PRK05800 61 --------------------EEPLDLAELLRADAAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKII 120 (170)
T ss_pred --------------------cccccHHHHHHhhcCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEE
Confidence 0000122333333445778999977653 11 1 12346678888888888899
Q ss_pred EecCCChh
Q psy318 216 ATSNRAPD 223 (438)
Q Consensus 216 ~TSN~~P~ 223 (438)
++||-.-.
T Consensus 121 lVs~Evg~ 128 (170)
T PRK05800 121 LVTNEVGM 128 (170)
T ss_pred EEEcCCcc
Confidence 99997533
No 181
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.0032 Score=57.67 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+.+++..+. .+..+|++|+..
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~ 155 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRL 155 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence 36888999999999999886 78887778888888885 467778887764
No 182
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.23 E-value=0.0023 Score=61.33 Aligned_cols=48 Identities=27% Similarity=0.350 Sum_probs=32.9
Q ss_pred HHHHhhcCCeEEEecCCC-CChhh-HHHHHHHHHHHHHCC---CEEEEecCCC
Q psy318 174 ANDIISKTWLICFDEFQV-TDIAD-AMILKRLFTELFQLG---VVVVATSNRA 221 (438)
Q Consensus 174 a~~~~~~~~lLc~DEf~v-~d~~d-a~iL~~Lfn~l~~~g---~~lV~TSN~~ 221 (438)
+...+.+..+++|||+.. +|+.+ ..++..++..+.+.| ..+|+||...
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 444557889999999997 56655 344556888887653 3566677663
No 183
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.23 E-value=0.0015 Score=74.32 Aligned_cols=47 Identities=9% Similarity=0.177 Sum_probs=33.7
Q ss_pred hccCEEEEcCCCCCCcCCchHHHHHHHHHHHh----------hhCCCeEEEEeCCChhhh
Q psy318 342 QIFHTVIIRNVPQLNIKLRSQSRRFITLIDAL----------YDNNIRLVISSDVPLNKL 391 (438)
Q Consensus 342 ~~f~ti~i~~VP~l~~~~~n~arRFI~LID~l----------Yd~~vkL~~~a~~~~~~L 391 (438)
.-|.+|++++|-.+ +.+...-|..++|.= +=.++-+|+++...-+.+
T Consensus 610 ~p~~VvllDeieka---~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i 666 (821)
T CHL00095 610 KPYTVVLFDEIEKA---HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVI 666 (821)
T ss_pred CCCeEEEECChhhC---CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHH
Confidence 45789999999865 566777777788862 235788888888765533
No 184
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.0015 Score=73.07 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...... ...+..+++|||+|+|||.++.+|..++.
T Consensus 22 GQe~~v~~L~~aI~~------------------~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 22 GQDHIVQTLKNIIKS------------------NKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 577777776665431 13356678999999999999999998874
No 185
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.20 E-value=0.00081 Score=70.88 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...+++|+||+|||||+|+.++...+.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999987764
No 186
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.20 E-value=0.0013 Score=61.08 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+.++||||.|+|||.||..+.+.+.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 46799999999999999999998884
No 187
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0038 Score=60.64 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEec
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATS 218 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TS 218 (438)
++|+.++-++++++|||.-. +|+.---.+..++..|.+.|..+|+.+
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVT 193 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVT 193 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 47899999999999999987 788776678888999999997655544
No 188
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.19 E-value=0.0048 Score=58.29 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+..++..+.+.|..+|++|...
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46888999999999999987 788888889999998877787777777764
No 189
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.16 E-value=0.0076 Score=56.93 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46888999999999999987 788888888889988877777777777663
No 190
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0023 Score=70.73 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
.|..++..|.+... ....+..+++|||+|+|||.++-+|...+..
T Consensus 20 GQe~i~~~L~~~i~------------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 20 AQEHITHTIQNSLR------------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CcHHHHHHHHHHHH------------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57777777666432 1244677999999999999999999988843
No 191
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.15 E-value=0.0016 Score=61.27 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+..++..+.+.|..+|++|+.+
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 46899999999999999886 688777788888988877787788888764
No 192
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.14 E-value=0.0046 Score=51.65 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=25.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcc-cceeeec
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHF 99 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf 99 (438)
++++|+|++|+|||+++-.+...+... ...++.+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv 35 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLV 35 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEE
Confidence 478999999999999988887766432 2345544
No 193
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.13 E-value=0.003 Score=63.07 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=23.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+++.|.|++|+|||+|+.++...++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999988875
No 194
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.12 E-value=0.0029 Score=69.59 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=24.6
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..++.+++|||+|+|||.++.+|...+.
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998874
No 195
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.12 E-value=0.0089 Score=53.19 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=28.5
Q ss_pred cCCeEEEecCCCCCh-hhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 180 KTWLICFDEFQVTDI-ADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~-~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
..++|++||+|.... .....+..++..+ ..+..+|+.|..|+....
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~-~~~~~~v~~saT~~~~~~ 175 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLL-PKNVQLLLLSATPPEEIE 175 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhC-CccceEEEEecCCchhHH
Confidence 467999999998764 3334444555544 345566666666654443
No 196
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.12 E-value=0.0077 Score=69.80 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=76.8
Q ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
...++.+++.|++|+..+-. ..+=++|.|++|+|||++|.++...+.. ...+|..
T Consensus 341 ~~~g~~Ls~eQr~Av~~il~------------------------s~~v~vv~G~AGTGKTT~l~~~~~~~e~-~G~~V~~ 395 (988)
T PRK13889 341 EARGLVLSGEQADALAHVTD------------------------GRDLGVVVGYAGTGKSAMLGVAREAWEA-AGYEVRG 395 (988)
T ss_pred HhcCCCCCHHHHHHHHHHhc------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEE
Confidence 34557788888887764310 0123579999999999999988776643 2455665
Q ss_pred hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhh
Q psy318 100 NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIIS 179 (438)
Q Consensus 100 ~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~ 179 (438)
-......-+.|.+..+ +.. ....++ -.++.. + ...+.
T Consensus 396 ~ApTGkAA~~L~e~tG-------------i~a--------~TI~sl----------l~~~~~---~---------~~~l~ 432 (988)
T PRK13889 396 AALSGIAAENLEGGSG-------------IAS--------RTIASL----------EHGWGQ---G---------RDLLT 432 (988)
T ss_pred ecCcHHHHHHHhhccC-------------cch--------hhHHHH----------Hhhhcc---c---------ccccc
Confidence 4443333333322100 000 000000 000000 0 11235
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
..+||++||..+++.. .+..|+......|..||+-+.. .+|.+
T Consensus 433 ~~~vlIVDEASMv~~~---~m~~LL~~a~~~garvVLVGD~--~QLps 475 (988)
T PRK13889 433 SRDVLVIDEAGMVGTR---QLERVLSHAADAGAKVVLVGDP--QQLQA 475 (988)
T ss_pred cCcEEEEECcccCCHH---HHHHHHHhhhhCCCEEEEECCH--HHcCC
Confidence 7899999999999754 3456777666788888888763 44444
No 197
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.12 E-value=0.0065 Score=60.36 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSN 219 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN 219 (438)
-+|+.+++++++|++||--. +|+..+..+..++..+. ++|..+|++..
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlH 197 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 47899999999999999987 79999999999999998 55776766653
No 198
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.12 E-value=0.0027 Score=70.28 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 24 IQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 24 l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+..=..|..++..|...+.. ...+..++|||++|+|||.++.+|...+-
T Consensus 15 f~~liGq~~i~~~L~~~l~~------------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 15 FDELVGQEAIATTLKNALIS------------------NRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred HhhccChHHHHHHHHHHHHc------------------CCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 33344688888887776542 12345799999999999999999998884
No 199
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.11 E-value=0.005 Score=69.26 Aligned_cols=166 Identities=17% Similarity=0.081 Sum_probs=88.5
Q ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhccc-ceeee
Q psy318 20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQ-KQRVH 98 (438)
Q Consensus 20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~-k~R~H 98 (438)
....+.+++.|++|+..+.. .+-+.|.|++|||||+++.++...+.... ..++.
T Consensus 318 ~~~~~~l~~~Q~~Ai~~~~~-------------------------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~ 372 (720)
T TIGR01448 318 KKLRKGLSEEQKQALDTAIQ-------------------------HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVG 372 (720)
T ss_pred HhcCCCCCHHHHHHHHHHHh-------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEE
Confidence 34567888899888775411 12488999999999999999988775332 14455
Q ss_pred chhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh
Q psy318 99 FNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDII 178 (438)
Q Consensus 99 f~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~ 178 (438)
....-...-++|.+..+.. ..+ -+..+. . ..+....--.+-.
T Consensus 373 l~ApTg~AA~~L~e~~g~~---a~T-----------------ih~lL~---------------~---~~~~~~~~~~~~~ 414 (720)
T TIGR01448 373 LAAPTGRAAKRLGEVTGLT---AST-----------------IHRLLG---------------Y---GPDTFRHNHLEDP 414 (720)
T ss_pred EEeCchHHHHHHHHhcCCc---ccc-----------------HHHHhh---------------c---cCCccchhhhhcc
Confidence 4333333333333221100 000 000000 0 0000000000112
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhh-ccccccccccch
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTY-CDVASLNSNIDY 257 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~-~~vv~ld~g~Dy 257 (438)
...++|++||...+|... +.+|+..+ ..|..+|+-++ |.+|.+-+-. .+|-+++... ..++.|. .-|
T Consensus 415 ~~~~llIvDEaSMvd~~~---~~~Ll~~~-~~~~rlilvGD--~~QLpsV~~G----~v~~dl~~~~~~~~~~L~--~i~ 482 (720)
T TIGR01448 415 IDCDLLIVDESSMMDTWL---ALSLLAAL-PDHARLLLVGD--TDQLPSVGPG----QVLKDLILSQAIPVTRLT--KVY 482 (720)
T ss_pred ccCCEEEEeccccCCHHH---HHHHHHhC-CCCCEEEEECc--cccccCCCCC----chHHHHHhcCCCCEEEeC--eee
Confidence 368999999999998543 45555544 46778888886 4666664322 1233444433 3455565 346
Q ss_pred hcc
Q psy318 258 RSL 260 (438)
Q Consensus 258 R~~ 260 (438)
|..
T Consensus 483 RQ~ 485 (720)
T TIGR01448 483 RQA 485 (720)
T ss_pred ccC
Confidence 654
No 200
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.10 E-value=0.0025 Score=69.03 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=37.8
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHH--HH--------CCCEEEEecCCChhhhhcCCCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTEL--FQ--------LGVVVVATSNRAPDDLYKNGLQ 231 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l--~~--------~g~~lV~TSN~~P~~L~~~gl~ 231 (438)
+-..|+|||++.+....+..|.++++.- .. ..+.+|+||+.++.++-..|..
T Consensus 298 ~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f 359 (520)
T PRK10820 298 NGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEF 359 (520)
T ss_pred CCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 3578999999999888777777777652 11 1247999999999887654433
No 201
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.09 E-value=0.0057 Score=57.59 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=32.9
Q ss_pred hhcCCeEEEecCCC-CChhhHHHH-HHHHHHHHHCCCEEEEecCC
Q psy318 178 ISKTWLICFDEFQV-TDIADAMIL-KRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 178 ~~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+.+++++++||... +|+.....+ ..++..+.+.|..+|++|..
T Consensus 106 ~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 106 ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 46899999999997 676654444 45788887778888888875
No 202
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0031 Score=68.21 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
.|..++..|...+.. ...|..+++|||+|+|||.++.+|...+..
T Consensus 20 Gq~~v~~~L~~~~~~------------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 20 GQAPVVRALSNALDQ------------------QYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCHHHHHHHHHHHHh------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 577777777765532 134567899999999999999999998853
No 203
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.011 Score=55.70 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||-.. +|+.....+.+++..+..+|..+|++|...
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 46888999999999999987 788888888899998877787788888764
No 204
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.07 E-value=0.0086 Score=58.42 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++.+|+.||--- +|...+..+..+|..+... |..+|+.+.-
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 47899999999999999764 7888888899999999755 7666555544
No 205
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.06 E-value=0.0021 Score=65.61 Aligned_cols=50 Identities=20% Similarity=0.164 Sum_probs=36.0
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g 229 (438)
+--.|+|||++.++...+..|.++++.-. ...+.+|+|||..+.++-..|
T Consensus 93 ~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g 152 (329)
T TIGR02974 93 DGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEG 152 (329)
T ss_pred CCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcC
Confidence 45789999999999887777777665421 123579999999886665543
No 206
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.06 E-value=0.0027 Score=70.77 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=36.7
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g 229 (438)
.--.|+||||+......+..|.+++..-. ..++.+|+|||.++.++-..+
T Consensus 470 ~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 529 (686)
T PRK15429 470 DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 529 (686)
T ss_pred CCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcC
Confidence 34789999999999887777777775421 123579999999987765443
No 207
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.06 E-value=0.0035 Score=59.00 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHhhcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCC
Q psy318 176 DIISKTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 176 ~~~~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
..+.+.+++++||... +|+.+.. ++..++..+.+.+..+|++|..
T Consensus 104 ~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~ 150 (202)
T cd03243 104 SLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHF 150 (202)
T ss_pred HhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECCh
Confidence 3346899999999987 6776554 4456778787778888888876
No 208
>KOG0742|consensus
Probab=97.06 E-value=0.0015 Score=68.41 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.4
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
+++++|||||+||||.+.-+..
T Consensus 385 RNilfyGPPGTGKTm~ArelAr 406 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELAR 406 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHh
Confidence 7899999999999998877643
No 209
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.06 E-value=0.0041 Score=68.53 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...+.. ...+..++|||++|+|||.++.++...+.
T Consensus 28 Gq~~~v~~L~~~~~~------------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 28 GQEAMVRTLTNAFET------------------GRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 588888777775432 24567899999999999999999998874
No 210
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.06 E-value=0.0041 Score=68.10 Aligned_cols=44 Identities=25% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...... ...+..++||||+|+|||.++.+|..++.
T Consensus 20 Gqe~iv~~L~~~i~~------------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 20 GQDFVVETLKHSIES------------------NKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 577777776665431 12356688999999999999999999884
No 211
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0036 Score=67.31 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|..++..|...... ...+..++||||+|+|||.++.++...+.
T Consensus 19 iGq~~i~~~L~~~i~~------------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 19 IGQEIVVRILKNAVKL------------------QRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred cChHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688888777665421 12234566899999999999999998874
No 212
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.04 E-value=0.0023 Score=70.70 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.8
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+.+..+.|+|++|+|||+|+.+++...
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998766
No 213
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0066 Score=57.59 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|......+..++..+..+ |..+|++|...
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 141 EIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999887 7888888889999988775 77777776653
No 214
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.02 E-value=0.0026 Score=67.78 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...+.++|+|+||+|||+++..++..+.
T Consensus 192 ~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 192 TIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999998874
No 215
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.01 E-value=0.0087 Score=54.52 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=33.4
Q ss_pred cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 180 KTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 180 ~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
+++++++||+.. +|+.+...+...+..+..+|..+|++|..+
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~ 141 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 679999999987 688877777777777766677788887764
No 216
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.01 E-value=0.014 Score=54.74 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|..+
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 186 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY 186 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46888999999999999887 788888888899998877787777777764
No 217
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.00 E-value=0.0076 Score=58.74 Aligned_cols=50 Identities=18% Similarity=0.211 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|..+
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46889999999999999887 788888889999999877788777777763
No 218
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.99 E-value=0.0032 Score=57.65 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+ +..+|++|+..
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~ 148 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP 148 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh
Confidence 46889999999999999987 6877777777777765 56677777664
No 219
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.98 E-value=0.0039 Score=64.44 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
++++.|++++...-+. +.. ..|..+||.|+.|+|||+|+.++.+.+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~---~~~----------------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEA---IEN----------------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCCHHHHHHHHHHHHH---HHc----------------cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3578899887765432 221 23567999999999999999999888743
No 220
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.98 E-value=0.0085 Score=56.02 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|...
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999987 688888889999988877777788887774
No 221
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.97 E-value=0.015 Score=55.29 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+...|..+|++|+.+
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~ 184 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL 184 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46888999999999999887 688888888999998877787888888763
No 222
>PTZ00293 thymidine kinase; Provisional
Probab=96.97 E-value=0.0016 Score=62.88 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=43.0
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
..+++|.+||.|..+ + +..+.+.+.+.|+.||+++=. . -+.++.|.+...+|.-.=.|..+.
T Consensus 76 ~~~dvI~IDEaQFf~--~---i~~~~~~l~~~g~~VivaGLd------~-Df~~~~F~~~~~Ll~~AD~V~kl~ 137 (211)
T PTZ00293 76 KNYDVIAIDEGQFFP--D---LVEFSEAAANLGKIVIVAALD------G-TFQRKPFGQILNLIPLAERVTKLT 137 (211)
T ss_pred cCCCEEEEEchHhhH--h---HHHHHHHHHHCCCeEEEEecC------c-ccccCcCccHHHHHHhhCEEEEcc
Confidence 678999999999984 2 667788888899988877533 2 255667777666444443444454
No 223
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.97 E-value=0.0024 Score=61.98 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=20.4
Q ss_pred CCCCceEEEccCCCCHhHHHHHHH
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~ 86 (438)
..|.-++|||++|+|||+++..+.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 345669999999999999998874
No 224
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.01 Score=55.74 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||-.. +|......+..++..+.+.|..+|++|..
T Consensus 139 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 188 (204)
T PRK13538 139 ALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQ 188 (204)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 46888999999999999986 68888888889998887777777777776
No 225
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.94 E-value=0.0085 Score=60.70 Aligned_cols=56 Identities=20% Similarity=0.371 Sum_probs=36.7
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 19 LSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 19 v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.+..+..-|.=.++++.|..|++ + |+ ..-+.+++|+|++|.||||++.-|...-+
T Consensus 31 i~~~rWIgY~~A~~~L~~L~~Ll~----~-P~-----------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 31 IRADRWIGYPRAKEALDRLEELLE----Y-PK-----------RHRMPNLLIVGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred HhcCCeecCHHHHHHHHHHHHHHh----C-Cc-----------ccCCCceEEecCCCCcHHHHHHHHHHHCC
Confidence 344444444444556666666543 2 21 23357899999999999999999986553
No 226
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.0025 Score=69.68 Aligned_cols=44 Identities=32% Similarity=0.380 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...+.. ...++.+++|||+|+|||.++.+|..++.
T Consensus 20 Gq~~v~~~L~~~i~~------------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 20 GQEHITKTLKNAIKQ------------------GKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CcHHHHHHHHHHHHc------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567766666654331 12356678899999999999999988874
No 227
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.93 E-value=0.0028 Score=66.93 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+..++|+||+|+|||+|+.++...+.
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC
Confidence 46899999999999999999987664
No 228
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.93 E-value=0.016 Score=54.42 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=42.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46888999999999999987 788888889999998877787788887764
No 229
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.0047 Score=63.02 Aligned_cols=44 Identities=25% Similarity=0.194 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|...... ...|..++||||+|+|||.++..|...+-
T Consensus 10 ~q~~~~~~L~~~~~~------------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 10 LQPVVVKMLQNSIAK------------------NRLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred hHHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 377777777665431 23567889999999999999999988873
No 230
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.91 E-value=0.0039 Score=70.71 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
+..++|+||+|+|||+++..+...+..+ -.|+.+..
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~-~~~i~~~~ 384 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRK-YVRMALGG 384 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 3569999999999999999999877532 34555433
No 231
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.90 E-value=0.016 Score=54.35 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+...|..+|++|...
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 186 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL 186 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46888999999999999987 688777788888888877777788887664
No 232
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.90 E-value=0.019 Score=55.15 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.++++|++||-.. +|+.....+..++..+... |..+|++|..
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47889999999999999986 7888888888999888654 7777777765
No 233
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.90 E-value=0.0013 Score=71.46 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-----HHh-hcCCCCCCccccccc-----------cCCCCCceEEEccCCCCHhHHHHH
Q psy318 22 NEIQEDKHQEQIVKQLDNVYV-----SIK-NYAPQSKSMFSFFQD-----------KVKQPKGLYIYGAVGGGKTMLMDI 84 (438)
Q Consensus 22 g~l~~D~~Q~~a~~~L~~l~~-----~l~-~~~~~~~~~~~~~~~-----------~~~~pkGlyL~G~vG~GKT~Lmd~ 84 (438)
..+..|-.-.+-+++|.++-+ .|. .|.|.. |-.+.+. ..+.+..++|||++|||||+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~--f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~ 105 (531)
T TIGR02902 28 NKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKS--FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARL 105 (531)
T ss_pred CeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCC--HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 345557777777777777644 121 133321 1001111 224568899999999999999999
Q ss_pred HHHhh
Q psy318 85 FYESC 89 (438)
Q Consensus 85 f~~~l 89 (438)
+++.+
T Consensus 106 i~~~~ 110 (531)
T TIGR02902 106 VLEEA 110 (531)
T ss_pred HHHHh
Confidence 98754
No 234
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.89 E-value=0.0064 Score=56.67 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=31.7
Q ss_pred hcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHC-CCEEEEecCCC
Q psy318 179 SKTWLICFDEFQV-TDIADAM-ILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+.+++++||+.. +|+.+.. ++..++..+.+. +..+|++|...
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 4789999999997 6776544 345677777764 77777777774
No 235
>PRK10536 hypothetical protein; Provisional
Probab=96.89 E-value=0.01 Score=59.07 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=41.7
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHh--hccccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKT--YCDVASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~--~~~vv~ld 252 (438)
..++|++||.|.+++... ..++ .....+..+|++++..--|+..+ ...-+...+++++. .+.+|.++
T Consensus 176 ~~~~vIvDEaqn~~~~~~---k~~l-tR~g~~sk~v~~GD~~QiD~p~~--~~sGL~~~~~~~k~~~~~~~i~l~ 244 (262)
T PRK10536 176 ENAVVILDEAQNVTAAQM---KMFL-TRLGENVTVIVNGDITQCDLPRG--VKSGLSDALERFEEDEMVGIVRFG 244 (262)
T ss_pred cCCEEEEechhcCCHHHH---HHHH-hhcCCCCEEEEeCChhhccCCCC--CCCCHHHHHHHhCCCCceEEEEEe
Confidence 458999999999987532 2233 44457789999999866666431 11223456676663 33445554
No 236
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.88 E-value=0.022 Score=53.70 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~ 192 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL 192 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999887 688877888888988877777777777663
No 237
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.88 E-value=0.0031 Score=64.29 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=35.9
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH--H--------CCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF--Q--------LGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~--~--------~g~~lV~TSN~~P~~L~~~g 229 (438)
+--.|+|||++.+....+..|.++++.-. . ..+.+|+|||..+.++-..|
T Consensus 100 ~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 100 DGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred CCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence 35689999999999887777777775421 1 12579999999887665543
No 238
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.0061 Score=63.29 Aligned_cols=44 Identities=20% Similarity=0.092 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++..|.+.+.+ ...|..++|+||.|+||+.|+..|...+-
T Consensus 23 Gq~~~~~~L~~~~~~------------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 23 GHAAAEAALLDAYRS------------------GRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred ChHHHHHHHHHHHHc------------------CCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 577887777765542 24567899999999999999999998883
No 239
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.88 E-value=0.0088 Score=55.85 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. .|+.....+..++....+.|..+|++|+..
T Consensus 133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 183 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE 183 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 46888999999999999986 688777788888876666778888888775
No 240
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.86 E-value=0.0065 Score=57.94 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|......+..++..+.+.|..+|++|..
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 192 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN 192 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46888999999999999887 78888888999999988778788888875
No 241
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0057 Score=67.65 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+..+++|||.|+|||.++.+|...+.
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3466789999999999999999988773
No 242
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.85 E-value=0.016 Score=55.49 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus 152 ~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~ 201 (224)
T cd03220 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46888999999999999987 78887788888888887777777777766
No 243
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.85 E-value=0.025 Score=53.67 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46788999999999999987 68888888999999987778777777776
No 244
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.84 E-value=0.0066 Score=65.67 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=35.8
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH-H---------CCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF-Q---------LGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~-~---------~g~~lV~TSN~~P~~L~~~g 229 (438)
+--.|+|||++.+....+..|.+++..-. . ..+.+|+|||..+.++-..|
T Consensus 290 ~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~ 349 (534)
T TIGR01817 290 DGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKG 349 (534)
T ss_pred CCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcC
Confidence 34689999999999887777777665421 1 12579999999987765543
No 245
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.82 E-value=0.0013 Score=61.25 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=17.5
Q ss_pred Cc-eEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KG-LYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kG-lyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.+ .+|+||||||||++.-.+...+
T Consensus 17 ~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 17 NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHh
Confidence 35 8999999999997666555554
No 246
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.81 E-value=0.014 Score=54.32 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=29.5
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIHEVKKI 116 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~~~~~~ 116 (438)
++|.|++|+|||.++-.|... ...++.| ..+=.++.+++.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~H~~~ 50 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIARHRKR 50 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHHHHHh
Confidence 589999999999999888654 1234444 23444556666555443
No 247
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.016 Score=55.71 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 151 ~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46888999999999999987 688877888899998877777777777663
No 248
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0034 Score=59.21 Aligned_cols=54 Identities=15% Similarity=0.357 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCChhhh
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRAPDDL 225 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~P~~L 225 (438)
.+|..++.++++|++||--. +|......+.+++..+... +..+|+++...++++
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~ 183 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEI 183 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHH
Confidence 46899999999999999876 6888778888999988765 555555555444443
No 249
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.80 E-value=0.0086 Score=57.14 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus 141 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 141 AIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 46788999999999999987 6888778888999988764 77777777663
No 250
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.029 Score=53.26 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.. .|..+|++|..+
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~ 192 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI 192 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 46888999999999999887 788888889999988865 477777777764
No 251
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.80 E-value=0.012 Score=55.37 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|...
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 144 AIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46888999999999999987 788888888899988877787777777763
No 252
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.79 E-value=0.012 Score=57.08 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=31.0
Q ss_pred hcCCeEEEecCCC-CChhhHHH-HHHHHHHHHHC-CCEEEEecCCC
Q psy318 179 SKTWLICFDEFQV-TDIADAMI-LKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da~i-L~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+..++++||+.. ++..+... ...+++.+.+. +..+|+++...
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~ 154 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP 154 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence 4679999999986 45444443 46788888887 66777777764
No 253
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.02 Score=54.99 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|+.....+..++..+..+ |..+|++|...
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46889999999999999998 6888778888999888764 77788887764
No 254
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0089 Score=55.71 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=40.5
Q ss_pred HhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccc
Q psy318 177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVAS 250 (438)
Q Consensus 177 ~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ 250 (438)
.+..+|++++||++-..-.... +...++..+..+.++|+|=.+- .=-|.++.++....++.
T Consensus 97 A~~~aDvIIIDEIGpMElks~~-f~~~ve~vl~~~kpliatlHrr------------sr~P~v~~ik~~~~v~v 157 (179)
T COG1618 97 ALEEADVIIIDEIGPMELKSKK-FREAVEEVLKSGKPLIATLHRR------------SRHPLVQRIKKLGGVYV 157 (179)
T ss_pred HhhcCCEEEEecccchhhccHH-HHHHHHHHhcCCCcEEEEEecc------------cCChHHHHhhhcCCEEE
Confidence 3456899999999986544322 5667788888888898885532 11366666666544443
No 255
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.79 E-value=0.0061 Score=55.93 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=38.5
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
....+++|||++......+-+|...++.-- .++.+|++++.+ .. ++.-|+.+|.++.+.
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp-~~~~fiL~t~~~-~~-------------il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPP-ENTYFILITNNP-SK-------------ILPTIRSRCQVIRFR 159 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTT-TTEEEEEEES-G-GG-------------S-HHHHTTSEEEEE-
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCC-CCEEEEEEECCh-HH-------------ChHHHHhhceEEecC
Confidence 357899999999988776666666666543 345666666553 22 356788999988875
No 256
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0041 Score=61.60 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=38.4
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
....++++||.+......+-+|..+++.- ....++|+++|. |..+.+ -|+.+|.++.+.
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep-~~~~~~il~~n~-~~~il~-------------tI~SRc~~i~f~ 166 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEP-PKNTRFILITND-PSKILP-------------TIRSRCQRIRFK 166 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccC-CCCeEEEEEcCC-hhhccc-------------hhhhcceeeecC
Confidence 45799999999998765555554444432 234688899994 444443 466677766665
No 257
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.031 Score=52.67 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+ .|..+|++|...
T Consensus 140 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 46888999999999999987 788888888999998876 477777777764
No 258
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.78 E-value=0.022 Score=55.69 Aligned_cols=49 Identities=8% Similarity=0.143 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.+++++++||--. +|+.....+..++..+... |..+|++|..
T Consensus 125 ~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 125 AIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46889999999999999987 7888888888999888754 6777777765
No 259
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.78 E-value=0.022 Score=53.90 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|......+..++..+... |..+|++|...
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL 202 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999987 7888888888999888754 77777777764
No 260
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.77 E-value=0.0038 Score=58.96 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=25.6
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
+.|.||+|+|||.++.++...++...+.++.+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t 35 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILT 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEE
Confidence 67899999999999999988886544555554
No 261
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.77 E-value=0.011 Score=56.79 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=29.4
Q ss_pred hhcCCeEEEecCCC-CChhhH-HHHHHHHHHHHHC-CCEEEEecCC
Q psy318 178 ISKTWLICFDEFQV-TDIADA-MILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 178 ~~~~~lLc~DEf~v-~d~~da-~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
+.+..+|++||+.. ++.-|. .+...+++.+.+. +..+|++|..
T Consensus 107 ~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~ 152 (216)
T cd03284 107 ATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHY 152 (216)
T ss_pred CCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCc
Confidence 35789999999965 333332 3345667777776 7778888877
No 262
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.75 E-value=0.015 Score=55.10 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+.+.|..+|++|..
T Consensus 142 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 191 (222)
T cd03224 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN 191 (222)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46888999999999999987 68888888999999887777778888765
No 263
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.75 E-value=0.021 Score=53.75 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..+
T Consensus 147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46888999999999999987 688888889999998877777777777663
No 264
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.75 E-value=0.011 Score=59.69 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|+||...
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l 198 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM 198 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 47899999999999999987 799888889999999987888888888874
No 265
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.75 E-value=0.023 Score=50.58 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=30.2
Q ss_pred cCCeEEEecCCCCChhh-HHHHHHHHHHHHHC-CCEEEEecCCChhhh
Q psy318 180 KTWLICFDEFQVTDIAD-AMILKRLFTELFQL-GVVVVATSNRAPDDL 225 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~d-a~iL~~Lfn~l~~~-g~~lV~TSN~~P~~L 225 (438)
..++|+|||+|...... ...+..+++.+... ...+|++|-.++..+
T Consensus 119 ~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 119 RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHH
T ss_pred cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhH
Confidence 38999999999875422 22455666665433 467777777766544
No 266
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.74 E-value=0.0096 Score=63.94 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=35.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+++++++|+|||.-. +|...+..+.+.+..+. .+..+|+-|.+
T Consensus 480 aiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHr 528 (529)
T TIGR02868 480 ALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHH 528 (529)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 47899999999999999997 68777766666666654 34555555544
No 267
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.74 E-value=0.005 Score=60.74 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=24.7
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
+...++|||+.|||||.|+.++.+....
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999887753
No 268
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.74 E-value=0.023 Score=57.13 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCC-CEEEEecCCChhhhh
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLG-VVVVATSNRAPDDLY 226 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g-~~lV~TSN~~P~~L~ 226 (438)
.+|..++.++++|++||--. +|+.....+.+++..+...| +.|++||.. ++++.
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~-l~e~~ 201 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI-LEEAE 201 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc-HHHHH
Confidence 47889999999999999988 79999999999999999988 456666655 45444
No 269
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.74 E-value=0.025 Score=53.11 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 145 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46888999999999999886 788888889999999887777777777653
No 270
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.74 E-value=0.01 Score=55.82 Aligned_cols=50 Identities=22% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|..+
T Consensus 135 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 135 ALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 47889999999999999987 688877788888888777788888888764
No 271
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.73 E-value=0.031 Score=53.68 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+..+ |..+|++|...
T Consensus 124 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 175 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175 (230)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999886 7888888888988888764 77777777763
No 272
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.73 E-value=0.0013 Score=67.21 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLD 105 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~ 105 (438)
.+.|+|.|++|+|||.|+..+...+..+ -.|+.++.-+..
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~-~~rV~~~~~l~~ 103 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWP-CVRVNLDSHVSR 103 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCC-eEEEEecCCCCh
Confidence 5789999999999999999999998644 568888876544
No 273
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.73 E-value=0.0083 Score=62.52 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=28.8
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
.....-++|+|+||+|||+|+-.|...+.. .+.++-|-.+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~ 118 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSG 118 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEC
Confidence 344456899999999999999998877643 2346665443
No 274
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.0061 Score=61.40 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=39.1
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
.+..+++|||.+......+-.|...++.- ..++.+|++++. |+.+ +..|+++|.++.+.
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEep-p~~t~~il~~~~-~~~l-------------l~TI~SRc~~~~~~ 150 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEP-PKGVFIILLCEN-LEQI-------------LDTIKSRCQIYKLN 150 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCC-CCCeEEEEEeCC-hHhC-------------cHHHHhhceeeeCC
Confidence 46789999999988765555555555542 235666666643 4533 34578889888886
No 275
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.70 E-value=0.018 Score=55.03 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=34.1
Q ss_pred HhhcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCCC
Q psy318 177 IISKTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 177 ~~~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+.+.+++++||+.. +++.+.. +...+++.+.+.|..+|+||...
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 456789999999987 5665544 34567888888888888888763
No 276
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.70 E-value=0.031 Score=52.78 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|...+..+..++..+.+. |..+|++|...
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999987 6888888899999998764 77777777764
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.69 E-value=0.012 Score=55.58 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.++|..+|++|... +++..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~ 192 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG 192 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc
Confidence 46888999999999999987 687777778889988877788888887774 44443
No 278
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.014 Score=55.63 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=42.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+-++...+|-++||-.. +|...-..|..+|..-...|+.||+||..|
T Consensus 140 AlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 140 ALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 46788889999999999987 687776778888888888999999998875
No 279
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.027 Score=54.00 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+. |..+|++|..
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 204 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ 204 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46888999999999999987 7888888889999988754 7777777765
No 280
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.67 E-value=0.051 Score=52.15 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.. .|..+|++|...
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV 193 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 47889999999999999987 788888888899988874 577777777653
No 281
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.67 E-value=0.028 Score=52.90 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+..+ |..+|++|...
T Consensus 140 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 140 ALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47888999999999999987 7888888899999988764 77788888764
No 282
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.042 Score=52.47 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46888999999999999886 7888888899999988765 7777777765
No 283
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.65 E-value=0.036 Score=55.60 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=42.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 134 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~ 183 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183 (302)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 47889999999999999987 78888888999999988778888888876
No 284
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.64 E-value=0.021 Score=54.55 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 202 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD 202 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 46888999999999999987 68888888999999887777777777775
No 285
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.049 Score=53.88 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=42.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~ 197 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV 197 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 46888999999999999987 788888889999999887777777777763
No 286
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.64 E-value=0.025 Score=66.27 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=78.7
Q ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
....+.+++.|.+|+..+.. ..+=..|.|+.|+|||++|..+...+... +.+|+-
T Consensus 376 ~~~~~~Ls~eQ~~Av~~i~~------------------------~~r~~~v~G~AGTGKTt~l~~~~~~~e~~-G~~V~g 430 (1102)
T PRK13826 376 FARHARLSDEQKTAIEHVAG------------------------PARIAAVVGRAGAGKTTMMKAAREAWEAA-GYRVVG 430 (1102)
T ss_pred HhcCCCCCHHHHHHHHHHhc------------------------cCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 34567889999998875420 01237899999999999999998877532 445654
Q ss_pred hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhh
Q psy318 100 NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIIS 179 (438)
Q Consensus 100 ~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~ 179 (438)
-..-...-+.|.+..+.. .. ++ +.++ .++. ...++ +.
T Consensus 431 ~ApTgkAA~~L~e~~Gi~---a~---------TI--------as~l-----------l~~~----~~~~~--------l~ 467 (1102)
T PRK13826 431 GALAGKAAEGLEKEAGIQ---SR---------TL--------SSWE-----------LRWN----QGRDQ--------LD 467 (1102)
T ss_pred EcCcHHHHHHHHHhhCCC---ee---------eH--------HHHH-----------hhhc----cCccC--------CC
Confidence 333333333332211100 00 00 0000 0000 00111 34
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
..+||++||..+++..+ +..|+...-..|..||+-+. |.+|.+
T Consensus 468 ~~~vlVIDEAsMv~~~~---m~~Ll~~~~~~garvVLVGD--~~QL~~ 510 (1102)
T PRK13826 468 NKTVFVLDEAGMVASRQ---MALFVEAVTRAGAKLVLVGD--PEQLQP 510 (1102)
T ss_pred CCcEEEEECcccCCHHH---HHHHHHHHHhcCCEEEEECC--HHHcCC
Confidence 57899999999997554 34566666667888888885 466665
No 287
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.63 E-value=0.031 Score=54.24 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||-.. +|+.....+..++..+... |..+|++|...
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 46888999999999999987 7888788888999888764 77777777764
No 288
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.046 Score=52.36 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+... |..+|++|..
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 46888999999999999887 7888888888999888764 7777777765
No 289
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.60 E-value=0.051 Score=51.31 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.. .|..+|++|...
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 46888999999999999987 788888889999998876 577777777763
No 290
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.60 E-value=0.01 Score=65.79 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.6
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+-++|+||+|+|||.++.++...+
T Consensus 111 ~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999998766
No 291
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.60 E-value=0.0071 Score=65.23 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=35.6
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g 229 (438)
+--.|+|||++.+....+..|.+++..-. ...+.+|+|||..+.++-..|
T Consensus 281 ~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 340 (509)
T PRK05022 281 DGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG 340 (509)
T ss_pred CCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence 45679999999999877776776665321 113579999999987765443
No 292
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.60 E-value=0.013 Score=62.36 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=28.4
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
.+...-++|+|+||+|||+|+-.|...+.. +..++-|-.+
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~ 116 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSG 116 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEc
Confidence 344556889999999999999999877752 2345555443
No 293
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.60 E-value=0.026 Score=55.35 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~ 203 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999999999999986 7888888899999988764 7777777765
No 294
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.59 E-value=0.037 Score=52.86 Aligned_cols=50 Identities=24% Similarity=0.354 Sum_probs=42.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.++|..+|++|...
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~ 173 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46888999999999999887 788888889999998877787788887763
No 295
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.58 E-value=0.02 Score=56.38 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+..++..+.. .|..+|++|...
T Consensus 143 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~ 194 (257)
T PRK11247 143 ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194 (257)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47889999999999999987 688877788888888765 467777777663
No 296
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.58 E-value=0.04 Score=51.47 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|+.+ .++..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~ 192 (198)
T TIGR01189 137 ALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD-LGLVE 192 (198)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc-ccccc
Confidence 46888999999999999987 688877788888888877788888888775 44443
No 297
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.045 Score=51.51 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.. +..+|++|..
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~ 188 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHI 188 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 46888999999999999987 688888888899988865 4667777765
No 298
>KOG0991|consensus
Probab=96.57 E-value=0.015 Score=57.30 Aligned_cols=102 Identities=21% Similarity=0.254 Sum_probs=64.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
...+.|.||||+|||.-..+++..+-.+ .|-+-+++++.. ++. .+++
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG~-----~~ke~vLELNAS----------deR---------GIDv--------- 94 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLGD-----SYKEAVLELNAS----------DER---------GIDV--------- 94 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhCh-----hhhhHhhhccCc----------ccc---------ccHH---------
Confidence 4579999999999999999998888432 234667777521 000 0111
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh----hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDII----SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~----~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+|. .|...|++.. .+..++++||-+....+.+.+|.+..+-. .......+++|.
T Consensus 95 --------------VRn-------~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-S~ttRFalaCN~ 152 (333)
T KOG0991|consen 95 --------------VRN-------KIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-SNTTRFALACNQ 152 (333)
T ss_pred --------------HHH-------HHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-cccchhhhhhcc
Confidence 011 1222333322 45689999999997666667788877644 455667777886
Q ss_pred C
Q psy318 221 A 221 (438)
Q Consensus 221 ~ 221 (438)
.
T Consensus 153 s 153 (333)
T KOG0991|consen 153 S 153 (333)
T ss_pred h
Confidence 4
No 299
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.57 E-value=0.023 Score=53.76 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=35.8
Q ss_pred HHHHHH----hhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC--C-CEEEEecCCC
Q psy318 172 PVANDI----ISKTWLICFDEFQV-TDIADAMILKRLFTELFQL--G-VVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~----~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~--g-~~lV~TSN~~ 221 (438)
.+|..+ +.++++|++||... .|......+.+++..+... + ..++++++..
T Consensus 119 ~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~ 176 (198)
T cd03276 119 TVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI 176 (198)
T ss_pred HHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence 345555 47999999999987 6877777788888877543 3 3566666553
No 300
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.56 E-value=0.0085 Score=61.46 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.3
Q ss_pred ceEEEccCCCCHhHHHHHHHHhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
=++|.|++|||||.|+-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37899999999999998888877
No 301
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.56 E-value=0.0052 Score=67.86 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=36.1
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH-H---------CCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF-Q---------LGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~-~---------~g~~lV~TSN~~P~~L~~~g 229 (438)
+--.|+|||++.+....+..|.++++.-. . -.+.+|+|||..+.++-..|
T Consensus 416 ~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~ 475 (638)
T PRK11388 416 HGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQN 475 (638)
T ss_pred CCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcC
Confidence 35689999999998887777777775321 0 02469999999987776544
No 302
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.55 E-value=0.019 Score=53.82 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHH-HHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKR-LFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~-Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|+.....+.. ++..+...|..+|++|+.+
T Consensus 137 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 46889999999999999887 67766555655 5666656677788888774
No 303
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.55 E-value=0.041 Score=52.92 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||-.. +|+.....+..++..+.++|..+|++|...
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 196 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI 196 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46888999999999999987 688877888889998877777777777653
No 304
>PRK10908 cell division protein FtsE; Provisional
Probab=96.55 E-value=0.057 Score=51.28 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|...
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46888999999999999987 688777788889998877777777777763
No 305
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.54 E-value=0.025 Score=55.35 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+... |..+|++|...
T Consensus 130 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 46888999999999999987 6888778888888888765 77777777663
No 306
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.52 E-value=0.052 Score=53.39 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|......+..++..+... |..+|++|...
T Consensus 152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 47899999999999999987 7888888888999888764 77777777764
No 307
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.025 Score=57.87 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=42.8
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
....|+++|+++..|...+..|..+++..- .++.+|++|+.+ ..+ +..|.++|.++.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~-~~l-------------l~ti~SRc~~~~~~ 170 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAA-DKV-------------LPTIKSRCRKMVLP 170 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCCh-HhC-------------hHHHHHHhhhhcCC
Confidence 457899999999999888887777887764 456677776663 332 23577788887775
No 308
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.038 Score=52.17 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+.+++..+.++ |..+|++|...
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH
Confidence 46888999999999999887 6888788889999988765 77777777653
No 309
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.017 Score=59.19 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=40.1
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
....|++||+.+..+.+.+-.|..+++.=- .++.+|++|+.+ ..|. ..|+.+|.++.+.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-~~~~fiL~t~~~-~~ll-------------~TI~SRc~~~~~~ 163 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPS-GDTVLLLISHQP-SRLL-------------PTIKSRCQQQACP 163 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCC-CCeEEEEEECCh-hhCc-------------HHHHhhceeeeCC
Confidence 457899999999998776666655555422 356677777764 3333 3577888888775
No 310
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.49 E-value=0.053 Score=51.94 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.. .|..+|++|...
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46888999999999999887 688888888999998875 477777777763
No 311
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.49 E-value=0.029 Score=58.23 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC--CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL--GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~--g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+.+. |..+|++|..
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd 198 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD 198 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 46899999999999999887 7887777788888888776 6666666655
No 312
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.058 Score=52.77 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.. .|..+|++|..
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46888999999999999887 788888889999998864 47777777765
No 313
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.041 Score=51.78 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.. .|..+|++|..
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 188 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46888999999999999987 688888888899988865 47777777765
No 314
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.029 Score=53.85 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|......+..++..+.+.|..+|++|..
T Consensus 147 ~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (237)
T PRK11614 147 AIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN 196 (237)
T ss_pred HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 46888999999999999987 68877788889999888778777777765
No 315
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.47 E-value=0.027 Score=56.57 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=42.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+...|..+|++|...
T Consensus 145 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~ 195 (303)
T TIGR01288 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 195 (303)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 46888999999999999987 788888889999999887888888887763
No 316
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.46 E-value=0.05 Score=51.45 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+.. +..+|++|..+
T Consensus 143 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~ 192 (220)
T cd03263 143 SLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM 192 (220)
T ss_pred HHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH
Confidence 46888999999999999887 788888888888888765 56777777763
No 317
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.46 E-value=0.012 Score=57.41 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...+=|.|||..|+|||.|+..+++...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccc
Confidence 3456799999999999999999998844
No 318
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.026 Score=54.36 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+..++..+..+ |..+|++|...
T Consensus 139 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~ 190 (235)
T cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190 (235)
T ss_pred HHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 46888999999999999987 7888888888888888664 77788888764
No 319
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.034 Score=54.69 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~ 195 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47888999999999999987 68888888899999987777777777765
No 320
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.45 E-value=0.06 Score=51.03 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=40.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 46788999999999999987 68887788888998887777777777765
No 321
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.45 E-value=0.0055 Score=66.65 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+++++++|++||.-. +|...+..+.+.+..+. .+..+|+-|.+
T Consensus 495 alARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHr 543 (588)
T PRK11174 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQ 543 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence 47999999999999999997 68777777777777665 44555555555
No 322
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.44 E-value=0.0066 Score=66.21 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=37.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|+|||.-. +|...+..+.+.+..+.. ++.+|+.|.++
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~ 530 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRL 530 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecH
Confidence 47899999999999999997 687777777777776643 55666666664
No 323
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.44 E-value=0.027 Score=54.15 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.. +..+|++|..
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~ 201 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHD 201 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECC
Confidence 46888999999999999987 788888888899988865 6677788776
No 324
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.43 E-value=0.041 Score=52.91 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~ 196 (241)
T PRK10895 147 EIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196 (241)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC
Confidence 46888999999999999987 68877777888888887778778888765
No 325
>KOG1514|consensus
Probab=96.42 E-value=0.0051 Score=67.98 Aligned_cols=59 Identities=29% Similarity=0.400 Sum_probs=44.0
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCC--CEEEEecCC--ChhhhhcC------CCCcCCccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLG--VVVVATSNR--APDDLYKN------GLQRSNFLP 237 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g--~~lV~TSN~--~P~~L~~~------gl~r~~F~p 237 (438)
+...||++||++.+-.-.+-+|+++|++-...+ .+||+-+|. -|+.+..+ |+.|-.|.|
T Consensus 507 ~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p 575 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP 575 (767)
T ss_pred CCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCC
Confidence 457899999999987666889999999876554 355566665 47766653 667777877
No 326
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.42 E-value=0.045 Score=53.24 Aligned_cols=49 Identities=29% Similarity=0.262 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~ 197 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD 197 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 46889999999999999987 68887888889998887777777777776
No 327
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.42 E-value=0.022 Score=54.87 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|++|..+
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999998 6888888888899888765 67777777764
No 328
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.42 E-value=0.012 Score=55.91 Aligned_cols=41 Identities=12% Similarity=-0.082 Sum_probs=32.9
Q ss_pred cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 180 KTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 180 ~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
++++|++||... +|+.....+.++++.+.+.|..+|++|..
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~ 192 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV 192 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 468999999986 68877778889999987767777777664
No 329
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.41 E-value=0.045 Score=52.46 Aligned_cols=49 Identities=12% Similarity=0.276 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+. .|..+|++|...
T Consensus 149 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~ 198 (238)
T cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL 198 (238)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH
Confidence 46888999999999999987 68887778888888876 677777777653
No 330
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.41 E-value=0.022 Score=64.66 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=35.6
Q ss_pred hcCCeEEEecCCC-CChhhHHHH-HHHHHHHHHCCCEEEEecCCCh
Q psy318 179 SKTWLICFDEFQV-TDIADAMIL-KRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
....+|++||+.. +|+.+...+ ..++..+.+.|..+|+||....
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 5789999999997 687776655 5688888888888999998853
No 331
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.063 Score=53.13 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+..+ |..+|++|...
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47889999999999999986 7888888899999998775 77777777764
No 332
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.41 E-value=0.025 Score=54.64 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=30.3
Q ss_pred hcCCeEEEecCCC-CChhhHHHHHHH-HHHHHHC-CCEEEEecCCC
Q psy318 179 SKTWLICFDEFQV-TDIADAMILKRL-FTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da~iL~~L-fn~l~~~-g~~lV~TSN~~ 221 (438)
.+..++++||+.. +++.+...+... ++.|.+. +..+|+++...
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 4678999999987 555554444444 6777765 77788887763
No 333
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.39 E-value=0.086 Score=50.06 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|...+..+..++..+.. .|..+|++|...
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46888999999999999987 788888889999998876 477788887763
No 334
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.041 Score=53.99 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999887 6888888889999988764 77777777763
No 335
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.38 E-value=0.041 Score=52.35 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM 103 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm 103 (438)
...=+.|+|++|+|||.|+-.|...+.. ...++-|-.+-
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 3444789999999999998888766632 24566666654
No 336
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.38 E-value=0.028 Score=61.11 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||.-. +|...+..+...+..+.+ +..+|+.|.++
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~ 539 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL 539 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence 47899999999999999997 688777777777777654 45555555553
No 337
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0062 Score=67.60 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=22.1
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
=|.|.||||+|||.|...++.++.
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhC
Confidence 388999999999999999999985
No 338
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.041 Score=52.63 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.. |..+|++|...
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 46888999999999999987 688777778888888765 77777777653
No 339
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.36 E-value=0.043 Score=60.59 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
.+|.+++.++++|++||--. +|...+..+.+++..+...|..+|+|+..|..++.
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~ 231 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELF 231 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHH
Confidence 57899999999999999987 78888888888999888788888899888755544
No 340
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.36 E-value=0.042 Score=52.29 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 46888999999999999987 7888888899999888654 77777777764
No 341
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.34 E-value=0.08 Score=53.49 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus 175 alA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 47888999999999999987 68887888889999988778777766655
No 342
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.33 E-value=0.019 Score=62.08 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+...|..+|++|.+.
T Consensus 464 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~ 514 (544)
T TIGR01842 464 ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP 514 (544)
T ss_pred HHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCH
Confidence 47899999999999999886 687777777777777765677777777774
No 343
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.33 E-value=0.015 Score=63.32 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=38.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+.. ++.+|+.|+++
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~ 535 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL 535 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence 47899999999999999997 687777777777776654 46677777774
No 344
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.32 E-value=0.067 Score=53.12 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|......|..++..+... |..||++|...
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 204 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI 204 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47899999999999999987 7888888888999988764 77777776653
No 345
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.11 Score=49.37 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+.+++..+. .|..+|++|...
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~ 198 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRL 198 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence 47888999999999999886 78887777888888874 577777777653
No 346
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.31 E-value=0.027 Score=59.30 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHd 198 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHD 198 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 47899999999999999887 78888888889999998778777777765
No 347
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.31 E-value=0.12 Score=50.92 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.+++++++||--. +|+.....+..++..+...|..+|++|...
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 46788899999999999987 688877778889998877777788887763
No 348
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.30 E-value=0.014 Score=63.63 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=36.4
Q ss_pred CCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCC
Q psy318 181 TWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGL 230 (438)
Q Consensus 181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl 230 (438)
--.|+|||++.+....+..|.+++..-. .-.+.+|+|||..+.++-..|.
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~ 382 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGR 382 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhccc
Confidence 4579999999999888887777775421 1123799999999877655443
No 349
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.30 E-value=0.0049 Score=67.83 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=27.8
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeech
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHFN 100 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf~ 100 (438)
-.||+|.|++|+|||+|+.++...++.. .-.|++++
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~ 52 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLG 52 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcc
Confidence 4589999999999999999998877532 13455543
No 350
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.30 E-value=0.0093 Score=61.21 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=27.8
Q ss_pred CCc-eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 65 PKG-LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 65 pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
++| ++|.||+|+|||++|.++...++...+.++..-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 345 579999999999999999988864445566553
No 351
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.29 E-value=0.025 Score=58.31 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46899999999999999987 7888888888999998765 7777777765
No 352
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.29 E-value=0.03 Score=56.16 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+ +..+|+||...
T Consensus 143 ~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l 192 (301)
T TIGR03522 143 GLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM 192 (301)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 46888999999999999987 788888888889988854 67788888774
No 353
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.29 E-value=0.029 Score=54.20 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=41.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+. |..+|++|...
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~ 192 (241)
T PRK14250 141 SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM 192 (241)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 46888999999999999987 6888788888999988764 77777777663
No 354
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.091 Score=51.76 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=40.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999999999999887 6888788889999888654 7777777765
No 355
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.28 E-value=0.046 Score=56.99 Aligned_cols=50 Identities=16% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|......+..++..+... |..+|++|...
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46899999999999999887 7887777788888888764 77777666653
No 356
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.28 E-value=0.034 Score=57.79 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|+.....+..++..+... |..+|++|...
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~ 190 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL 190 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 37899999999999999886 7888888888888888754 77777776653
No 357
>PRK05973 replicative DNA helicase; Provisional
Probab=96.27 E-value=0.041 Score=54.05 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=29.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh---HHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM---LDVHAKI 110 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm---~~v~~~l 110 (438)
..-++|.|+||+|||.++--|..... ....++.|-.|- .++.+++
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a-~~Ge~vlyfSlEes~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM-KSGRTGVFFTLEYTEQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHH
Confidence 34478899999999999888765543 235566665544 3444444
No 358
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.26 E-value=0.018 Score=62.69 Aligned_cols=50 Identities=22% Similarity=0.188 Sum_probs=35.9
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g 229 (438)
.--.|+|||++.+....+..|.+++..-. .-.+.+|+|||.++.++-..|
T Consensus 307 ~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g 366 (526)
T TIGR02329 307 HRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQG 366 (526)
T ss_pred CCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhc
Confidence 34679999999999888777777765421 112379999999987765543
No 359
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.26 E-value=0.067 Score=52.88 Aligned_cols=49 Identities=14% Similarity=0.023 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||-.. +|+.....+.+++..+.+.|..+|++|..
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46888999999999999886 68777777888888887778777777765
No 360
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.25 E-value=0.12 Score=49.06 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+. ..+|++|...
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~ 200 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM 200 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH
Confidence 46888999999999999987 7888888888999988776 6677777664
No 361
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.24 E-value=0.033 Score=56.71 Aligned_cols=58 Identities=10% Similarity=0.217 Sum_probs=41.6
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
....|++||+.+....+.+-.|..+++.-- . ..+|++++. |+. ++..|+++|.++.+.
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~-~~fILi~~~-~~~-------------Ll~TI~SRcq~i~f~ 180 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-N-GTLILIAPS-PES-------------LLPTIVSRCQIIPFY 180 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-C-CeEEEEECC-hHh-------------CcHHHHhhceEEecC
Confidence 457999999999988777777777777654 4 356666664 333 345678888888886
No 362
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.24 E-value=0.026 Score=58.02 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l 232 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM 232 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 46888999999999999988 798888889999999988888888888763
No 363
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.23 E-value=0.082 Score=50.00 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.. +..+|++|...
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 198 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL 198 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 46889999999999999987 688877788888888754 56667777653
No 364
>KOG1051|consensus
Probab=96.23 E-value=0.039 Score=63.12 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh--hcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC--ETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEK 142 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l--~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (438)
+--+++-||.|+|||=|+.++...+ .-+.-.|+-+-+||. +- +.-.. |++
T Consensus 591 ~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-vs----kligs-------------p~g---------- 642 (898)
T KOG1051|consen 591 DAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-VS----KLIGS-------------PPG---------- 642 (898)
T ss_pred CeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh-hh----hccCC-------------Ccc----------
Confidence 3458899999999999999998888 334557888888887 32 22111 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh-hcCCeEEEecCCCCChhhHHHHHHHHHHHH---H-------CC
Q psy318 143 EREREREREREREREREREREAKSYDPIPPVANDII-SKTWLICFDEFQVTDIADAMILKRLFTELF---Q-------LG 211 (438)
Q Consensus 143 ~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~-~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~---~-------~g 211 (438)
.+|. .....++..+- +-..|++||||+.-++.-.+.|.++++.-. . ..
T Consensus 643 ----------------yvG~-----e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 643 ----------------YVGK-----EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred ----------------cccc-----hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 0111 11123333333 346999999999988877777777776532 1 22
Q ss_pred CEEEEecCCChhhhhcC
Q psy318 212 VVVVATSNRAPDDLYKN 228 (438)
Q Consensus 212 ~~lV~TSN~~P~~L~~~ 228 (438)
+++|+|||..-..+..+
T Consensus 702 ~I~IMTsn~~~~~i~~~ 718 (898)
T KOG1051|consen 702 AIFIMTSNVGSSAIAND 718 (898)
T ss_pred eEEEEecccchHhhhcc
Confidence 46899999976666554
No 365
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.22 E-value=0.024 Score=53.29 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+. .|..+|++|+.
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~ 183 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHR 183 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 46888999999999999987 68777777888888874 46677777765
No 366
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.22 E-value=0.072 Score=52.44 Aligned_cols=49 Identities=20% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+.+. |..+|++|..
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~ 211 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD 211 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC
Confidence 47888999999999999886 6887777888889888764 6677777766
No 367
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.21 E-value=0.028 Score=53.36 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=38.8
Q ss_pred HHHHHhhcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHC-CCEEEEecCC
Q psy318 173 VANDIISKTWLICFDEFQV-TDIADAM-ILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 173 va~~~~~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
+++.+..++++|++||... +|+.... .+..++..+... |..+|++|..
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 5677788999999999997 6877777 788889888765 6677777776
No 368
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.089 Score=51.05 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|+.....+..++..+.. +..+|++|...
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~ 208 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM 208 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH
Confidence 46888999999999999987 688877788899988865 46677777653
No 369
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.061 Score=55.20 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=40.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+... |..+|++|..
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46889999999999999987 7888888888999888654 7777777766
No 370
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.19 E-value=0.079 Score=51.06 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+... |..+|++|..+
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 47888999999999999987 7888888899999888664 66777777764
No 371
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.18 E-value=0.042 Score=58.84 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+.+.+++++++|+|||--. +.+..+..||.++..|.+.|+.||+-|.+-
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL 200 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL 200 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 46788999999999999875 577778889999999999999888887764
No 372
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.033 Score=53.22 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+. +|..+|++|+..
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~ 197 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRL 197 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence 47888999999999999987 68887788888888885 477777777664
No 373
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.12 Score=51.40 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 46888999999999999987 7888888899999988765 77777776653
No 374
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.1 Score=51.78 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....|..++..+.. .|..+|++|...
T Consensus 154 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~ 205 (280)
T PRK13633 154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM 205 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 47899999999999999987 788888889999998875 477777777664
No 375
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.16 E-value=0.053 Score=55.98 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+...+..+... |..+|++|..
T Consensus 144 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd 194 (353)
T TIGR03265 144 ALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194 (353)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 46899999999999999987 7877777788888887664 7776666654
No 376
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.16 E-value=0.013 Score=62.89 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||.-. +|...+..+.+.+..+. .+..+|+.|.+.
T Consensus 468 ~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~ 517 (529)
T TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRL 517 (529)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence 47899999999999999987 68777776767776664 456666666664
No 377
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.15 E-value=0.075 Score=51.90 Aligned_cols=50 Identities=24% Similarity=0.289 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.+++||++||--. +|......+.+++..+..+ |..+|++|...
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46888999999999999987 7888888899999998754 77777777664
No 378
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.045 Score=56.62 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|++|...
T Consensus 144 alARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 144 AMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46899999999999999987 7887777788888888765 77777777653
No 379
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.14 E-value=0.043 Score=57.45 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|+.....+.+++..+... |..+|++|...
T Consensus 174 ~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl 225 (382)
T TIGR03415 174 GLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL 225 (382)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46889999999999999887 7888888888888888764 77777777663
No 380
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.14 E-value=0.0096 Score=61.79 Aligned_cols=27 Identities=37% Similarity=0.690 Sum_probs=24.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+.|+|.||||+|||+|+.++...+.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 458899999999999999999988884
No 381
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.14 Score=50.73 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|...
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47899999999999999887 7888788888999998764 77777777764
No 382
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.13 E-value=0.059 Score=57.51 Aligned_cols=50 Identities=28% Similarity=0.333 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~ 195 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 46888999999999999987 788888889999999877787777777653
No 383
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.061 Score=52.06 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.. |..+|++|..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~ 200 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHN 200 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 47899999999999999987 688777788888988754 7666666665
No 384
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.12 E-value=0.0045 Score=55.98 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=20.5
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhcc
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETK 92 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~ 92 (438)
..++.++|+|++|+|||+|+..+...+...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999999999998888543
No 385
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.028 Score=55.12 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=38.2
Q ss_pred hHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCC-CEEEEec
Q psy318 171 PPVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLG-VVVVATS 218 (438)
Q Consensus 171 ~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g-~~lV~TS 218 (438)
-++|.-++.++++|++||--. +|+.....+..++..|...+ ..+|+.|
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~t 196 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT 196 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 457888889999999999987 78888888889999998874 4444443
No 386
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.11 E-value=0.15 Score=47.19 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=29.6
Q ss_pred hhcCCeEEEecCCCCC-hhhHHHHHHHHHHHHHCCCEEEEecCCChhh
Q psy318 178 ISKTWLICFDEFQVTD-IADAMILKRLFTELFQLGVVVVATSNRAPDD 224 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d-~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~ 224 (438)
+...+++++||+|... .+-...+..+++.+ ..++.++++|-.+|..
T Consensus 141 ~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l-~~~~~~~~~SAT~~~~ 187 (203)
T cd00268 141 LSKVKYLVLDEADRMLDMGFEDQIREILKLL-PKDRQTLLFSATMPKE 187 (203)
T ss_pred hhhCCEEEEeChHHhhccChHHHHHHHHHhC-CcccEEEEEeccCCHH
Confidence 3567899999999854 22234455566655 3466777777776643
No 387
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.11 E-value=0.043 Score=59.36 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+.. +..+|+.|.+
T Consensus 479 aLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~ 527 (571)
T TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHR 527 (571)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehh
Confidence 47899999999999999997 687777777777776654 4455555555
No 388
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.10 E-value=0.061 Score=57.88 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 150 ~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~ 200 (510)
T PRK15439 150 EILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL 200 (510)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47888999999999999887 788888889999999887787777777663
No 389
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.10 E-value=0.03 Score=61.03 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||.-. +|...+..+...+..+. .|..+|+.|.+.
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~ 510 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRL 510 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch
Confidence 47899999999999999987 68777676767776664 566677777664
No 390
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.08 E-value=0.055 Score=52.28 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=34.7
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh-----------cccceeeechhh---hHHHHHHHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE-----------TKQKQRVHFNKF---MLDVHAKIHEVKKI 116 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~-----------~~~k~R~Hf~~f---m~~v~~~l~~~~~~ 116 (438)
-.|+|++|+|||+|+--+..++. .....+|.|... ..+++++++.+...
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQH 66 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhh
Confidence 36899999999999988876653 123456766443 45678888776543
No 391
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.055 Score=55.73 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 46899999999999999886 6887777888888888765 7767777665
No 392
>PLN03211 ABC transporter G-25; Provisional
Probab=96.08 E-value=0.069 Score=59.65 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDL 225 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L 225 (438)
.+|..++.++++|++||--. +|...+..+.+++..+.+.|..+|+|+..+..++
T Consensus 216 ~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i 270 (659)
T PLN03211 216 SIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270 (659)
T ss_pred HHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence 57899999999999999987 7888888889999998878888888988865433
No 393
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.08 E-value=0.035 Score=52.03 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=26.6
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
+..+=+.|+|++|+|||.|+-.|....... ..++-|-.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~ 48 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDT 48 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence 444558999999999999988876655322 344544333
No 394
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.07 E-value=0.044 Score=52.63 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=36.2
Q ss_pred HHHHHh----hcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 173 VANDII----SKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 173 va~~~~----~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+|..++ ..+++|++||--. +|+.....+.+++..+.. +..+|+|++.
T Consensus 169 la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~ 220 (243)
T cd03272 169 LALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFR 220 (243)
T ss_pred HHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 566664 3589999999997 688877778888887755 6777777776
No 395
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.07 E-value=0.08 Score=52.04 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.++++|++||-.. +|+.....+.+++..+... |..+|++|..
T Consensus 159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 46888999999999999887 7888778888999888764 7667777665
No 396
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.07 E-value=0.042 Score=58.21 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=29.1
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh-cccceeeechhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE-TKQKQRVHFNKF 102 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~-~~~k~R~Hf~~f 102 (438)
++-+.|.||.|+|||+++-.+...+. ...+.++.+-.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 34689999999999999888877665 345678887544
No 397
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.06 E-value=0.059 Score=56.72 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|+.....+..++..+.. .|..+|++|...
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~ 225 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL 225 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH
Confidence 46889999999999999887 788888888888988865 477777777653
No 398
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.02 E-value=0.043 Score=58.88 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~ 202 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 47888999999999999986 78888888999999987778777777765
No 399
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.02 E-value=0.016 Score=60.14 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=65.4
Q ss_pred HHHhhcCCeEEEecCCCCC---hhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccc
Q psy318 175 NDIISKTWLICFDEFQVTD---IADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVAS 250 (438)
Q Consensus 175 ~~~~~~~~lLc~DEf~v~d---~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ 250 (438)
-.++++.+.++|+++-..+ ...+.-+-+|++.||++++.+++++..+|++|+.++-....|.+.++||.++...-.
T Consensus 280 laLA~~F~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~v~L~~sa~~~~~~L~~~~~~~~~f~RT~SRL~Em~~~~y 358 (362)
T PF03969_consen 280 LALAERFHTIFISDVPVLSESDRNEARRFITLIDVLYDRKVKLIISAAAPPDELFQGGRLAFEFQRTASRLSEMQSEEY 358 (362)
T ss_pred HHHHHhCCEEEEcCCCCcccCChhHHHHHHHHHHHHhhCCCcEEEEcCCCHHHHHhCCCchhhhhHHHHHHHHHhhHHH
Confidence 3466889999999999865 455677999999999999999999999999999987777789999999999876433
No 400
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.02 E-value=0.056 Score=52.35 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=30.3
Q ss_pred cCCeEEEecCCCCC---hhh-HHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 180 KTWLICFDEFQVTD---IAD-AMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 180 ~~~lLc~DEf~v~d---~~d-a~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
++++|+||=+...- +.. -.+++.|++.+.+.|+.+|+|+..+
T Consensus 126 ~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~~~ 171 (237)
T TIGR03877 126 NAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQVS 171 (237)
T ss_pred CCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 58899999888632 211 1346778888889999999997654
No 401
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.01 E-value=0.014 Score=52.12 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=27.7
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVH 107 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~ 107 (438)
=|-++|++|+|||++..++++++=.....--+.|.|+...|
T Consensus 55 VlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~h 95 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHH 95 (127)
T ss_pred EEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeeccccc
Confidence 34499999999999999999997322223334444554443
No 402
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.056 Score=55.84 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|..-...+..++..+... |..+|+.|..
T Consensus 146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 146 ALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 46899999999999999887 6877666777778777654 7666666654
No 403
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.99 E-value=0.038 Score=59.54 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=43.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++.++++||-.. +|...+.+|.+-+..+..+|+.+|+-+.+|
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 36899999999999999998 587777888899999999999888888885
No 404
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.99 E-value=0.1 Score=49.71 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=33.5
Q ss_pred HHHHHHhhcCCeEEEec-CCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDE-FQVTDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DE-f~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++|| +...|......+..++....... .+|++|..
T Consensus 114 ~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~-~ii~vsH~ 162 (213)
T PRK15177 114 AFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQK-GLIVLTHN 162 (213)
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCC-cEEEEECC
Confidence 46888999999999999 56678777666777664433332 35556555
No 405
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.94 E-value=0.041 Score=51.60 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=58.8
Q ss_pred eEEEccCCCCHhHHHHHHHHhh-hcccceeeechhhhHH-HHHH-HHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYESC-ETKQKQRVHFNKFMLD-VHAK-IHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l-~~~~k~R~Hf~~fm~~-v~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
|.+|=+.|-|||. .++.-++ ..-+..||++-+||.. .+.. +..++ ..+.-. -...+- .+...+.+ +++..
T Consensus 6 i~vytG~GKGKTT--AAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~-~l~~~~--~~~~g~-~f~~~~~~-~~~~~ 78 (172)
T PF02572_consen 6 IQVYTGDGKGKTT--AALGLALRAAGHGMRVLIVQFLKGGRYSGELKALK-KLPNVE--IERFGK-GFVWRMNE-EEEDR 78 (172)
T ss_dssp EEEEESSSS-HHH--HHHHHHHHHHCTT--EEEEESS--SS--HHHHHHG-GGT--E--EEE--T-T----GGG-HHHHH
T ss_pred EEEEeCCCCCchH--HHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHH-hCCeEE--EEEcCC-cccccCCC-cHHHH
Confidence 7889999999998 5666666 3467889999999988 3322 11111 110000 000000 00001111 11111
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318 145 EREREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVVATSN 219 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV~TSN 219 (438)
...++.+ ..|++.+ ..+++|++||+-.. ..-+...+..+++.. ....-||+|+.
T Consensus 79 ~~~~~~~--------------------~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~r-p~~~evVlTGR 137 (172)
T PF02572_consen 79 AAAREGL--------------------EEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENR-PESLEVVLTGR 137 (172)
T ss_dssp HHHHHHH--------------------HHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS--TT-EEEEE-S
T ss_pred HHHHHHH--------------------HHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcC-CCCeEEEEECC
Confidence 1111111 1244444 46999999998752 111222344455532 34568999999
Q ss_pred CChhhhhc
Q psy318 220 RAPDDLYK 227 (438)
Q Consensus 220 ~~P~~L~~ 227 (438)
.+|.+|-+
T Consensus 138 ~~~~~l~e 145 (172)
T PF02572_consen 138 NAPEELIE 145 (172)
T ss_dssp S--HHHHH
T ss_pred CCCHHHHH
Confidence 99988764
No 406
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.94 E-value=0.03 Score=53.01 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=25.8
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
.=+.|+|++|+|||.|+-.|...+.. ...++-|-
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi 53 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYI 53 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 33899999999999999988776642 34566554
No 407
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.92 E-value=0.13 Score=56.20 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=41.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 153 aLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl 203 (549)
T PRK13545 153 GFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203 (549)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 46888999999999999886 788877788888888877787777777663
No 408
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.92 E-value=0.056 Score=57.79 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=27.6
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
.+...=++|+|+||+|||+|+-.|...+... ..++-|-.+
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~ 130 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSG 130 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEC
Confidence 3444558999999999999999887666432 234545443
No 409
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=95.92 E-value=0.025 Score=62.84 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=23.0
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.||+|+|++|+|||+++.++...++
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp 50 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLP 50 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCC
Confidence 5899999999999999999988874
No 410
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=95.91 E-value=0.032 Score=60.71 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHH-HHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKR-LFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~-Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||.-. +|...+..+.+ ++..+...|..+|+.|+++
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 47899999999999999997 68776665544 5555555677777777763
No 411
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.91 E-value=0.13 Score=48.70 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+.+++..+... ..+|++|...
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~ 199 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP 199 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCH
Confidence 46888999999999999987 6888888888888887654 5666666653
No 412
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=95.91 E-value=0.015 Score=52.01 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 24 IQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 24 l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.+=++|.+|+..+.+....- ..++.++|.+++|+|||.+|-.+...+.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~------------------~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENK------------------KEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTT------------------SGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc------------------CCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 456689999988777654321 1356899999999999999997666653
No 413
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.045 Score=56.77 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 46899999999999999887 7887777788888888764 7777777665
No 414
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.89 E-value=0.046 Score=61.04 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+ .|..+|+.|.++
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~ 669 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRL 669 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecch
Confidence 47899999999999999987 6776666666555554 466667777764
No 415
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=95.87 E-value=0.085 Score=53.70 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus 110 alaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46888999999999999887 7888778888888888764 7777777665
No 416
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.85 E-value=0.11 Score=57.99 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||.-. +|...+..+.+.+..+.. +..+|+.|.++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl 660 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRT 660 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 47899999999999999887 688777777777777764 55566666664
No 417
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.85 E-value=0.16 Score=54.50 Aligned_cols=50 Identities=24% Similarity=0.175 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|...
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47888999999999999887 788888888899999877787777777654
No 418
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.11 Score=51.24 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+. .+..+|++|..
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~ 212 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHN 212 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 46888999999999999987 68887788888998884 46666777665
No 419
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.056 Score=56.50 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=27.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhccc-ceeeechh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQ-KQRVHFNK 101 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~-k~R~Hf~~ 101 (438)
+.-+.|.||+|+|||+++..+...+.... +.++.+-.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 45689999999999999999987764332 24665543
No 420
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.1 Score=54.36 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+...+..+.. .|..+|++|..
T Consensus 159 aLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 159 ALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 46899999999999999887 687766666666666654 57778877775
No 421
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.82 E-value=0.067 Score=50.55 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=32.7
Q ss_pred hcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
..+++|++||-.. +|+.....+..++..+.+ +..+|++|..+
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~ 176 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRK 176 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCH
Confidence 4569999999987 688888888888888865 56677777663
No 422
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.82 E-value=0.014 Score=61.12 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=36.2
Q ss_pred CCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCC
Q psy318 181 TWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGL 230 (438)
Q Consensus 181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl 230 (438)
--.|+|||++..+...+..|.++++.-. ..++.+|+|||.++..+-..|.
T Consensus 238 ~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~ 297 (457)
T PRK11361 238 EGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT 297 (457)
T ss_pred CCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCC
Confidence 4589999999999877776766665421 1125899999999887766443
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.79 E-value=0.065 Score=61.03 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=34.5
Q ss_pred hcCCeEEEecCCC-CChhhHHHH-HHHHHHHHHCCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQV-TDIADAMIL-KRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
....|+++||+.. +|+.+...+ ..+++.+.+.|..+|+||+.+
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~ 450 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK 450 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH
Confidence 5789999999997 677765555 467888888888888898874
No 424
>KOG0061|consensus
Probab=95.79 E-value=0.072 Score=59.02 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=49.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
.+|.+++.++.+|++||--. +|...|..+-+++..+...|+.||+|=..|+.+++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~ 236 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFE 236 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHH
Confidence 47899999999999999998 788888888899999998898888888888888875
No 425
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.79 E-value=0.15 Score=54.81 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.. .|..||++|...
T Consensus 178 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 229 (520)
T TIGR03269 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229 (520)
T ss_pred HHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 47889999999999999887 788888888889988865 476666666653
No 426
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.79 E-value=0.18 Score=47.91 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.. +..+|++|..+
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 209 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRL 209 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCH
Confidence 47888999999999999986 788888888888888754 56667776653
No 427
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.79 E-value=0.0067 Score=58.35 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=20.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.+|+|+|++|+|||||+..+-.-+|
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 47999999999999999999987775
No 428
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.77 E-value=0.11 Score=51.85 Aligned_cols=45 Identities=27% Similarity=0.331 Sum_probs=30.6
Q ss_pred HHHHHhhcCCeEEEec-CCCCChhhHHHHHHHHHHHHH-CCCEEEEe
Q psy318 173 VANDIISKTWLICFDE-FQVTDIADAMILKRLFTELFQ-LGVVVVAT 217 (438)
Q Consensus 173 va~~~~~~~~lLc~DE-f~v~d~~da~iL~~Lfn~l~~-~g~~lV~T 217 (438)
||+.++.++.+|++|| |+.+|+-.-..|-..|..+.. .|..+|+-
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV 192 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV 192 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE
Confidence 7899999999999999 556786554445555555543 35545443
No 429
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.18 Score=49.37 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
-+|+.++-++++|++||--. +|+-..+-+-.|+..|.+.=.++|+|=|-
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCH
Confidence 57899999999999999987 78888888899999998777788888775
No 430
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=95.76 E-value=0.15 Score=55.29 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=37.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+. .+..+|+.|.++
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~ 535 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL 535 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch
Confidence 46899999999999999987 67776666777777665 466777777775
No 431
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.077 Score=54.28 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=40.7
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
...|++||+.+....+.+-.|..+++.=- .++.+|++||.+ ..| +..|+.+|.++.+.
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~~~fiL~~~~~-~~l-------------LpTIrSRCq~i~~~ 170 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPS-PGRYLWLISAQP-ARL-------------PATIRSRCQRLEFK 170 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCC-CCCeEEEEECCh-hhC-------------chHHHhhheEeeCC
Confidence 46899999999988776666666665532 245677777663 323 34688999999887
No 432
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.74 E-value=0.026 Score=61.78 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+. .+..+|+.|.++
T Consensus 481 ~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~ 530 (585)
T TIGR01192 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRL 530 (585)
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCh
Confidence 47899999999999999997 68877777777777764 466777777774
No 433
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.71 E-value=0.066 Score=55.32 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=38.9
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
....|++||+.+......+-.|..+++.=- .++.+|++|+.+ +.|. ..|+.+|..+.+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~-~~LL-------------pTI~SRcq~i~~~ 189 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPP-PGTVFLLVSARI-DRLL-------------PTILSRCRQFPMT 189 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCC-cCcEEEEEECCh-hhCc-------------HHHHhcCEEEEec
Confidence 457899999999998776666666666432 345566666653 4433 3466777777766
No 434
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=95.71 E-value=0.036 Score=53.92 Aligned_cols=50 Identities=32% Similarity=0.418 Sum_probs=40.3
Q ss_pred HHHHHHhh-------cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIIS-------KTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~-------~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++. ++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 136 ~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~ 193 (248)
T PRK03695 136 RLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL 193 (248)
T ss_pred HHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 36777775 669999999987 788888888899998877787788887763
No 435
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.70 E-value=0.11 Score=53.71 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|+.|..
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46899999999999999887 7888778888899888765 6655555444
No 436
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.68 E-value=0.14 Score=51.97 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=31.5
Q ss_pred CCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318 181 TWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDL 225 (438)
Q Consensus 181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L 225 (438)
..+++|||+|......-..+..++..+...+.++|+.|-..|..+
T Consensus 125 ~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SATlp~~l 169 (358)
T TIGR01587 125 NSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSATLPKFL 169 (358)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCchHHH
Confidence 378999999997643333366777777766777777777767544
No 437
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.67 E-value=0.051 Score=60.45 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+ +..+|+.|.++
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~ 645 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL 645 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh
Confidence 47899999999999999987 6877666565555544 55667777763
No 438
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.67 E-value=0.13 Score=50.60 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=28.5
Q ss_pred cCCeEEEecCCCCC---hhh-HHHHHHHHHHHHHCCCEEEEecCC
Q psy318 180 KTWLICFDEFQVTD---IAD-AMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 180 ~~~lLc~DEf~v~d---~~d-a~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
++++++||=+...- ... ..++..|++.+.+.++.+++|+..
T Consensus 131 ~~~~vVIDSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e~ 175 (259)
T TIGR03878 131 KVKNTVIDSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQK 175 (259)
T ss_pred CCCEEEEcCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 68999999886432 111 124566788888889888888764
No 439
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.65 E-value=0.02 Score=62.57 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=38.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+. .+..+|+.|.++
T Consensus 485 alARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~ 534 (574)
T PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRL 534 (574)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCh
Confidence 47899999999999999987 68777777777777765 466666677664
No 440
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.63 E-value=0.065 Score=57.87 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....|.+++. +.|..||++|..
T Consensus 165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd 211 (530)
T PRK15064 165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHD 211 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCC
Confidence 46888999999999999987 68777776666664 456666666654
No 441
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.63 E-value=0.29 Score=50.03 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|..++.++++|++||--. +|...+..+..++..+.+. |..+|++|...
T Consensus 171 ~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl 222 (330)
T PRK09473 171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL 222 (330)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 47889999999999999887 7888778888889888764 77777777653
No 442
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.63 E-value=0.22 Score=49.68 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=39.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.. +..+|++|+.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~ 240 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHN 240 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 46889999999999999986 788888888888888754 5667777765
No 443
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.61 E-value=0.16 Score=48.39 Aligned_cols=41 Identities=17% Similarity=0.010 Sum_probs=28.5
Q ss_pred cCCeEEEecCCCC---ChhhH-HHHHHHHHHHHHCCCEEEEecCC
Q psy318 180 KTWLICFDEFQVT---DIADA-MILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 180 ~~~lLc~DEf~v~---d~~da-~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+.+++++|-+... ++... ..+..|...+.+.|+.+|+|+..
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~ 165 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQY 165 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 4678999998875 22222 23455667777889999999874
No 444
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.61 E-value=0.12 Score=53.20 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|++|...
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 47889999999999999987 7888778888889888765 77677776653
No 445
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.59 E-value=0.12 Score=52.87 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|...+..+..++..+.+. |..+|+.|..
T Consensus 171 ~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 171 GIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47888999999999999987 7888888888999988764 7666666654
No 446
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.59 E-value=0.076 Score=59.30 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+. +.+..+|+.|.+.
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~---~~~~T~IiitHrl 672 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLR---RRGCTCIIVAHRL 672 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHH---hcCCEEEEEecCH
Confidence 47899999999999999987 67766655544444 3567777777774
No 447
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.23 Score=48.30 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+..++++++|||--. +|+.....+..++.++.+.|..+|++|..
T Consensus 143 ~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~ 192 (245)
T COG4555 143 AIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192 (245)
T ss_pred HHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc
Confidence 47999999999999999887 68877788899999999999888887765
No 448
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.074 Score=57.99 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++++|||--. +|...+.++.+.+..+.+. ..+++.|.+.
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl 515 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL 515 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh
Confidence 46899999999999999987 6888888888888888877 4555666664
No 449
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=95.53 E-value=0.16 Score=54.39 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=41.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd 200 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK 200 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 47888999999999999887 78888888999999988778766666654
No 450
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.53 E-value=0.15 Score=46.37 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=24.1
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
+.+.|++|+|||.++..+...+... ..|+.+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~ 33 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLL 33 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEE
Confidence 5688999999999999998877533 445654
No 451
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.53 E-value=0.03 Score=55.85 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++||+||--. +|+.....+..++..+. .++.+|++|...
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~ 197 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI 197 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH
Confidence 47899999999999999887 68777777888888775 466777777764
No 452
>PRK04040 adenylate kinase; Provisional
Probab=95.52 E-value=0.019 Score=54.10 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=32.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVH 107 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~ 107 (438)
|+=+.|+|.||+|||+++..+...++. .-.-++|.++|.++-
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~-~~~~~~~g~~~~~~a 43 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKE-DYKIVNFGDVMLEVA 43 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhcc-CCeEEecchHHHHHH
Confidence 456899999999999999999998852 234577777776653
No 453
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.52 E-value=0.17 Score=54.02 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+...|..+|++|...
T Consensus 144 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~ 194 (491)
T PRK10982 144 EIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM 194 (491)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 46888999999999999987 788888888899999877787777777653
No 454
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.51 E-value=0.022 Score=61.91 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+++++++|+|||--. +|...+..+...+..+. +++.+++-+.+
T Consensus 475 aiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHR 523 (567)
T COG1132 475 AIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHR 523 (567)
T ss_pred HHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEecc
Confidence 57999999999999999987 67777666777777666 44444444444
No 455
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=95.51 E-value=0.13 Score=55.06 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|...
T Consensus 413 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 47888999999999999987 788888889999999988887787777653
No 456
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.11 Score=49.38 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=36.4
Q ss_pred HHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEE
Q psy318 173 VANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVA 216 (438)
Q Consensus 173 va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~ 216 (438)
+|+.++-+..+|++||--. +|.+.-..+-.|++.-.++|..+|.
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvG 207 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVG 207 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEE
Confidence 6899999999999999876 5666666677889998899987764
No 457
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.49 E-value=0.029 Score=59.03 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=34.8
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHH----------HHCCCEEEEecCCChhhh
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTEL----------FQLGVVVVATSNRAPDDL 225 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l----------~~~g~~lV~TSN~~P~~L 225 (438)
+--.|++||++......+..|+++++.. ....+.+|+++|-.+.+.
T Consensus 173 ~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~ 228 (403)
T COG1221 173 NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEA 228 (403)
T ss_pred CCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHH
Confidence 4568999999999988888888888873 233467888888765443
No 458
>PRK13409 putative ATPase RIL; Provisional
Probab=95.48 E-value=0.17 Score=55.90 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+.+++..+..+ |..+|++|.-
T Consensus 463 aiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD 513 (590)
T PRK13409 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513 (590)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46888999999999999987 7988888899999998764 6666666554
No 459
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=95.47 E-value=0.082 Score=63.78 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCCChhhhh
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNRAPDDLY 226 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~P~~L~ 226 (438)
.+|..++.++++||+||--. +|...+..+.+++..+.+ .|..+|+|+..++.++.
T Consensus 219 sIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~ 275 (1394)
T TIGR00956 219 SIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAY 275 (1394)
T ss_pred HHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH
Confidence 57899999999999999998 788888888899999876 47788888877655554
No 460
>KOG0735|consensus
Probab=95.47 E-value=0.11 Score=58.16 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=25.7
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...+..+||+||.|+|||-|+.++++.+.
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~ 456 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYS 456 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhc
Confidence 34467899999999999999999999986
No 461
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.46 E-value=0.033 Score=60.24 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=32.5
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHH------------HHCCCEEEEecCCChhhhhc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTEL------------FQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l------------~~~g~~lV~TSN~~P~~L~~ 227 (438)
.--+|||||+...+...+..|.+.++.- +.....+|+|+|.-|-..+.
T Consensus 295 ~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~ 354 (499)
T TIGR00368 295 HNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYG 354 (499)
T ss_pred CCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCC
Confidence 4579999999988766655565555321 11235789999987755553
No 462
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.45 E-value=0.0096 Score=53.42 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=22.3
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
|+|+|+||+|||.|+.++..++... -.|+.|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~-f~RIq~t 33 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS-FKRIQFT 33 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT---EEEEE--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc-eeEEEec
Confidence 7999999999999999999988644 4678875
No 463
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.45 E-value=0.013 Score=60.41 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|++|.|++|+|||+|+.++...++
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~ 50 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLP 50 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhc
Confidence 46899999999999999999988775
No 464
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.45 E-value=0.2 Score=62.32 Aligned_cols=119 Identities=12% Similarity=0.067 Sum_probs=65.8
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKER 144 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (438)
.+=..|.|++|+|||.+|..+...+.. ...+|+--.--....++|.+.-+..+ ..-+.|
T Consensus 446 ~~v~ii~G~aGTGKTt~l~~l~~~~~~-~G~~V~~lAPTgrAA~~L~e~~g~~A--------------------~Ti~~~ 504 (1960)
T TIGR02760 446 KRFIIINGFGGTGSTEIAQLLLHLASE-QGYEIQIITAGSLSAQELRQKIPRLA--------------------STFITW 504 (1960)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHhcchh--------------------hhHHHH
Confidence 356889999999999999999887753 35677765544444444443211100 000011
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCchHHH--HHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 145 EREREREREREREREREREAKSYDPIPPVA--NDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 145 ~~~~~~~~~~~~~~~r~~~~~~~d~i~~va--~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+++-. ++ ...+.+.... ..-+...++|++||...++..+ +..|+...-..|..||+-++.
T Consensus 505 l~~l~----------~~---~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~---~~~Ll~~a~~~garvVlvGD~ 566 (1960)
T TIGR02760 505 VKNLF----------ND---DQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNE---LLKLIDKAEQHNSKLILLNDS 566 (1960)
T ss_pred HHhhc----------cc---ccchhHHHhhcccCCCCCCCEEEEECCCCCCHHH---HHHHHHHHhhcCCEEEEEcCh
Confidence 11000 00 0000000000 0012468999999999997554 556677776778878776553
No 465
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.43 E-value=0.073 Score=59.37 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..+. .+..+|+.|+++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~ 652 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRL 652 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCCh
Confidence 47899999999999999987 68777777777777764 566777777764
No 466
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.42 E-value=0.15 Score=62.36 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=30.1
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
..+||++||..+++..+ +..|+...-..|..+|+-++. .+|.+
T Consensus 1062 ~~~llIVDEaSMv~~~~---m~~Ll~~~~~~garvVLVGD~--~QL~s 1104 (1747)
T PRK13709 1062 SNTLFLLDESSMVGNTD---MARAYALIAAGGGRAVSSGDT--DQLQA 1104 (1747)
T ss_pred CCcEEEEEccccccHHH---HHHHHHhhhcCCCEEEEecch--HhcCC
Confidence 46999999999998655 344555554567788888764 45544
No 467
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.41 E-value=0.35 Score=49.36 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|...+..+.+++..+.+. |..+|++|..
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47889999999999999987 7888777888888888764 7766666654
No 468
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.41 E-value=0.16 Score=48.44 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=30.6
Q ss_pred cCCeEEEecCCCC-----Chh-hHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 180 KTWLICFDEFQVT-----DIA-DAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 180 ~~~lLc~DEf~v~-----d~~-da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.++++++|-+... +.. ....+..+++.+.+.|+.+|+|++..
T Consensus 107 ~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~ 154 (224)
T TIGR03880 107 GASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEAD 154 (224)
T ss_pred CCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 5789999987754 212 12357788888888999899988754
No 469
>PF13245 AAA_19: Part of AAA domain
Probab=95.37 E-value=0.035 Score=44.90 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=27.5
Q ss_pred CceE-EEccCCCCHh-HHHHHHHHhhhc--ccceeeechhhhHHHHHHH
Q psy318 66 KGLY-IYGAVGGGKT-MLMDIFYESCET--KQKQRVHFNKFMLDVHAKI 110 (438)
Q Consensus 66 kGly-L~G~vG~GKT-~Lmd~f~~~l~~--~~k~R~Hf~~fm~~v~~~l 110 (438)
.+++ |.||||+||| .+++++...+.. ....|+-+-.|-...-+.|
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l 58 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADEL 58 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHH
Confidence 3445 5999999999 556666555421 1156777766654444433
No 470
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.34 E-value=0.016 Score=51.95 Aligned_cols=27 Identities=15% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.++.++|+|++|||||.++..+...+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998874
No 471
>PRK13409 putative ATPase RIL; Provisional
Probab=95.34 E-value=0.23 Score=54.78 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|..++.++++|+|||--. +|+.....+.+++..+.+ |..+|++|...
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~ 271 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL 271 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 46888999999999999887 788888889999999887 87777777653
No 472
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.04 Score=56.14 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCeEEEecCC-CCChhhHHHHHHHHHHHHHC-CCEEEEecC
Q psy318 172 PVANDIISKTWLICFDEFQ-VTDIADAMILKRLFTELFQL-GVVVVATSN 219 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~-v~d~~da~iL~~Lfn~l~~~-g~~lV~TSN 219 (438)
++|+.++.++.+|++||-. .+|...-..|.+.+..+.++ |+.+|+.|.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 4688999999999999955 57877767788888888776 776666554
No 473
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.31 E-value=0.16 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.+-+.|+||.|+|||.|+..+..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHH
Confidence 45589999999999999998754
No 474
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.31 E-value=0.13 Score=49.18 Aligned_cols=37 Identities=24% Similarity=0.149 Sum_probs=25.6
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
.=+.|.|+||+|||.++--+...+......++-|-.+
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 4477899999999999887766554443455555443
No 475
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.30 E-value=0.04 Score=58.16 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=34.6
Q ss_pred CCeEEEecCCCCChhhHHHHHHHHHHHH--H--------CCCEEEEecCCChhhhhcCC
Q psy318 181 TWLICFDEFQVTDIADAMILKRLFTELF--Q--------LGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~--~--------~g~~lV~TSN~~P~~L~~~g 229 (438)
--.|+|||++.+....+..|.++++.-- . ..+.+|+|||..+.++-..|
T Consensus 233 ~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 3478999999999887777777665321 0 12379999999887665544
No 476
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.2 Score=51.04 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|...+..+.+++..+.+ .|..+|+.|..
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 36888999999999999987 788888888899999876 47666666655
No 477
>PTZ00424 helicase 45; Provisional
Probab=95.29 E-value=0.21 Score=51.34 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=29.3
Q ss_pred hhcCCeEEEecCCCC-ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 178 ISKTWLICFDEFQVT-DIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~-d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
+...++|++||.|.. +......+..++..+. ...++|+.|...|.++.
T Consensus 168 l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~ 216 (401)
T PTZ00424 168 VDDLKLFILDEADEMLSRGFKGQIYDVFKKLP-PDVQVALFSATMPNEIL 216 (401)
T ss_pred cccccEEEEecHHHHHhcchHHHHHHHHhhCC-CCcEEEEEEecCCHHHH
Confidence 567899999999974 2222223444454442 34567777777776543
No 478
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.28 E-value=0.18 Score=50.81 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... ..+|++|..
T Consensus 210 ~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~ 258 (305)
T PRK14264 210 CIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHN 258 (305)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcC
Confidence 47899999999999999987 6888777888888888664 556666654
No 479
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=95.28 E-value=0.064 Score=63.42 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=27.6
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeee
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVH 98 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~H 98 (438)
..++-+-|||+.|.|||+||.++|+.+...-...++
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vf 240 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVF 240 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEE
Confidence 345679999999999999999999987543333333
No 480
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.27 E-value=0.016 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.8
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.|.|++|+|||+++..+.+.+.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 67999999999999999988763
No 481
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.26 E-value=0.29 Score=47.78 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=30.1
Q ss_pred hcCCeEEEecCCC-CChhhH-HHHHHHHHHHHH-CCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQV-TDIADA-MILKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da-~iL~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+-.|+++|||.. ++..+. .+...+++.|.+ .+..+++|++..
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~ 166 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH 166 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc
Confidence 4567999999998 454443 356667888888 488888888885
No 482
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.24 E-value=0.22 Score=48.65 Aligned_cols=49 Identities=24% Similarity=0.378 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+..++..+. .+..+|++|...
T Consensus 166 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~ 215 (257)
T cd03288 166 CLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRV 215 (257)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecCh
Confidence 46888999999999999987 68777777888887764 467777777664
No 483
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=95.22 E-value=0.19 Score=55.92 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||-.. +|......+.++++.+.+.|..+|++|...
T Consensus 154 ~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~ 204 (648)
T PRK10535 154 SIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204 (648)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 46888999999999999887 788888889999999877787777777764
No 484
>PRK13764 ATPase; Provisional
Probab=95.21 E-value=0.055 Score=59.77 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceee
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV 97 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~ 97 (438)
..+|+++.|++|+|||+++.++.+.++. ..+.+
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~-~~riV 288 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYAD-MGKIV 288 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh-CCCEE
Confidence 3589999999999999999999988863 33444
No 485
>KOG0056|consensus
Probab=95.20 E-value=0.32 Score=52.68 Aligned_cols=151 Identities=14% Similarity=0.209 Sum_probs=79.5
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhcccc-eeeechhhhHHHHHHHHHHHHHhhh-cccCC-CC--------CCCCC
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQK-QRVHFNKFMLDVHAKIHEVKKILAR-DKAKS-YD--------PGVPN 131 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k-~R~Hf~~fm~~v~~~l~~~~~~~~~-~~~~~-~~--------~~~~~ 131 (438)
.+.|-+-|.||.|.|||.+|.+++.-..+... .++-=.. +..+ .++.++++-+- |.+.. |- .+-|+
T Consensus 562 ~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd-Irnv--t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~ 638 (790)
T KOG0056|consen 562 QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD-IRNV--TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS 638 (790)
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCch-HHHH--HHHHHHHhcCcccCcceeecceeeeheeecCCC
Confidence 45688999999999999999998765533211 1111111 1111 12333333211 11100 00 11111
Q ss_pred ccc-cchHHHHHHHHHHH---HHHHHHHHHHHHhhhc--cCCCCchHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHH
Q psy318 132 RLD-VMKEEEEKERERER---EREREREREREREREA--KSYDPIPPVANDIISKTWLICFDEFQV-TDIADAMILKRLF 204 (438)
Q Consensus 132 ~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~--~~~d~i~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lf 204 (438)
--+ ..-...+...-+.+ +++.|.-+-++||-+- +++. --++|+.+++.+.++++||--. +|-..+..+-.-+
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQ-RVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQ-RVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchh-hHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 100 00011222233333 5666666667777421 2222 2467899999999999999876 5555555566667
Q ss_pred HHHHHCCCEEEEe
Q psy318 205 TELFQLGVVVVAT 217 (438)
Q Consensus 205 n~l~~~g~~lV~T 217 (438)
+++......+|++
T Consensus 718 ~rlca~RTtIVvA 730 (790)
T KOG0056|consen 718 ARLCANRTTIVVA 730 (790)
T ss_pred HHHhcCCceEEEe
Confidence 7777665555554
No 486
>PLN03232 ABC transporter C family member; Provisional
Probab=95.18 E-value=0.074 Score=64.56 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHH-HHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAM-ILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~-iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++++|||.-. +|...+. ++.+++..+. .++.+|+.|++.
T Consensus 750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~ 800 (1495)
T PLN03232 750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQL 800 (1495)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECCh
Confidence 47999999999999999987 6765444 4556666544 455556666653
No 487
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.17 E-value=0.043 Score=59.47 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
....+.|.|++|+|||||+..+..-++
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllp 235 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLP 235 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCC
Confidence 345699999999999999999977664
No 488
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.17 E-value=0.032 Score=62.55 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=33.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.+++++++|++||.-. +|...+..+.. .....+..+|+.|.+.
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl 674 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRL 674 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccH
Confidence 47899999999999999987 67766655555 2223556666777663
No 489
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.16 E-value=0.017 Score=61.28 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.2
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
...|++++|+||+|+|||+|+.++...+..
T Consensus 44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 44 EVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346799999999999999999999888743
No 490
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.13 E-value=0.017 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+++.|++|+|||++++.+...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999987664
No 491
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.11 E-value=0.12 Score=58.59 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.+=++|.||.|.|||.|+.-|....
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~ 56 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGK 56 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhC
Confidence 3558999999999999999998644
No 492
>PRK04328 hypothetical protein; Provisional
Probab=95.10 E-value=0.27 Score=48.17 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=29.6
Q ss_pred cCCeEEEecCCCC---ChhhH-HHHHHHHHHHHHCCCEEEEecCCC
Q psy318 180 KTWLICFDEFQVT---DIADA-MILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 180 ~~~lLc~DEf~v~---d~~da-~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
++++++||=+... +.... ..+..|.+.+...|+.+++|+..+
T Consensus 128 ~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e~~ 173 (249)
T PRK04328 128 GAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQVS 173 (249)
T ss_pred CCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 6799999987643 22211 346667777888999999997654
No 493
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=95.09 E-value=0.35 Score=54.01 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++. +.|..+|+.|.+.
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~---~~~~tvI~isH~~ 639 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR---EFGITLFSVSHRK 639 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH---HcCCEEEEEeCch
Confidence 47899999999999999987 67766665555554 3477777777764
No 494
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.012 Score=62.72 Aligned_cols=28 Identities=29% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.-.+||+++||||||||||+.-+-.-+|
T Consensus 196 AGgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 196 AGGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred hcCCcEEEecCCCCchHHhhhhhcccCC
Confidence 3468999999999999999988866664
No 495
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.05 E-value=0.091 Score=51.49 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=35.4
Q ss_pred CchHHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEE
Q psy318 169 PIPPVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVA 216 (438)
Q Consensus 169 ~i~~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~ 216 (438)
-+-.+|+.++.++.+|++||--. +.+.=...++..+..+.+. |..|++
T Consensus 143 QMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL 192 (237)
T COG0410 143 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL 192 (237)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 35678999999999999999876 4444445578888888866 534444
No 496
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.18 Score=55.11 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=30.5
Q ss_pred hhcCCeEEEecCCCCChhh--HHHHHHHHHHHHHCCCEEEEecCCChhhhhc
Q psy318 178 ISKTWLICFDEFQVTDIAD--AMILKRLFTELFQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~d--a~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~ 227 (438)
+.+.++|+||..+...... ...|..| .........+|+.++..+.+|..
T Consensus 426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss~~Dl~e 476 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAHFSDLDE 476 (559)
T ss_pred hccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCChhHHHH
Confidence 3579999999999853221 1223322 22223345788888888877763
No 497
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.00 E-value=0.021 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.1
Q ss_pred eEEEccCCCCHhHHHHHHHHhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l 89 (438)
|+|.|++|+|||.|+..+...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998766
No 498
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.068 Score=57.72 Aligned_cols=114 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred EEccCCCCHhHHHHHHHHhhhc------------------------------------------------cccee---ee
Q psy318 70 IYGAVGGGKTMLMDIFYESCET------------------------------------------------KQKQR---VH 98 (438)
Q Consensus 70 L~G~vG~GKT~Lmd~f~~~l~~------------------------------------------------~~k~R---~H 98 (438)
|-|..|.|||+||..+.-..+. ...++ +.
T Consensus 39 L~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id 118 (500)
T COG1129 39 LLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID 118 (500)
T ss_pred EecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccC
Q ss_pred chhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh
Q psy318 99 FNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDII 178 (438)
Q Consensus 99 f~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~ 178 (438)
+...-....+.|.++..... +.... +.-+....-+-++|+.+.
T Consensus 119 ~~~m~~~A~~~l~~lg~~~~-~~~~v------------------------------------~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 119 RKAMRRRARELLARLGLDID-PDTLV------------------------------------GDLSIAQRQMVEIARALS 161 (500)
T ss_pred HHHHHHHHHHHHHHcCCCCC-hhhhh------------------------------------hhCCHHHHHHHHHHHHHh
Q ss_pred hcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 179 SKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 179 ~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.++++|++||--. ++..+...||.++..|.++|+.+|+-|.+
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr 204 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR 204 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc
No 499
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=94.98 E-value=0.22 Score=53.75 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=40.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+... |..+|++|..
T Consensus 166 ~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 47899999999999999987 7988888899999988764 6666666655
No 500
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.25 Score=51.91 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=31.1
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHC----CCEEEEecCCChhhhh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQL----GVVVVATSNRAPDDLY 226 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~----g~~lV~TSN~~P~~L~ 226 (438)
+..++++++|+.+... .+.+.|..+-..+-.. .+.+|+.++..+.++.
T Consensus 252 ~~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 252 SKDFDLVLVDTIGKSP-KDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred hCCCCEEEEcCCCCCc-cCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 3689999999999864 2333333433333221 3568888888877776
Done!