Query psy318
Match_columns 438
No_of_seqs 270 out of 1938
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:22:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w58_A DNAI, primosome compone 99.7 4.5E-17 1.5E-21 149.2 12.0 159 27-258 31-202 (202)
2 2qgz_A Helicase loader, putati 99.7 2.7E-17 9.3E-22 163.1 10.2 141 65-262 152-304 (308)
3 3ec2_A DNA replication protein 99.7 2.7E-16 9.2E-21 141.9 11.3 156 27-251 16-179 (180)
4 4b4t_J 26S protease regulatory 99.3 2.9E-11 1E-15 124.6 14.5 141 61-261 178-347 (405)
5 2kjq_A DNAA-related protein; s 99.3 8E-12 2.7E-16 111.2 8.6 96 64-227 35-131 (149)
6 1l8q_A Chromosomal replication 99.2 6.8E-11 2.3E-15 116.1 14.5 106 64-226 36-146 (324)
7 4b4t_L 26S protease subunit RP 99.2 1E-10 3.4E-15 121.8 13.8 141 61-261 211-380 (437)
8 4b4t_I 26S protease regulatory 99.2 7.9E-11 2.7E-15 122.2 11.8 141 61-261 212-381 (437)
9 4b4t_M 26S protease regulatory 99.2 9.9E-11 3.4E-15 121.7 12.2 141 61-261 211-380 (434)
10 4b4t_H 26S protease regulatory 99.2 1.7E-10 5.8E-15 120.7 13.7 141 61-261 239-408 (467)
11 2z4s_A Chromosomal replication 99.2 1E-10 3.5E-15 121.1 11.8 106 65-226 130-242 (440)
12 4b4t_K 26S protease regulatory 99.1 1.7E-10 5.9E-15 119.7 11.5 141 61-261 202-372 (428)
13 2qz4_A Paraplegin; AAA+, SPG7, 99.0 1.9E-09 6.6E-14 101.4 12.0 29 62-90 36-64 (262)
14 3bos_A Putative DNA replicatio 99.0 1.2E-09 4.2E-14 100.4 9.3 100 64-226 51-153 (242)
15 3co5_A Putative two-component 99.0 8E-10 2.7E-14 96.7 7.2 49 181-230 76-124 (143)
16 3t15_A Ribulose bisphosphate c 98.9 2.1E-09 7.2E-14 105.2 8.3 29 62-90 33-61 (293)
17 2ce7_A Cell division protein F 98.9 1E-08 3.5E-13 107.7 13.6 168 29-259 20-212 (476)
18 3h4m_A Proteasome-activating n 98.9 5.4E-09 1.8E-13 100.1 9.2 29 62-90 48-76 (285)
19 3cf0_A Transitional endoplasmi 98.8 9.8E-09 3.4E-13 100.5 9.8 29 62-90 46-74 (301)
20 3n70_A Transport activator; si 98.8 8.6E-09 2.9E-13 90.2 7.3 49 180-229 76-124 (145)
21 3cf2_A TER ATPase, transitiona 98.8 1.3E-08 4.5E-13 113.0 10.5 83 179-261 296-400 (806)
22 1xwi_A SKD1 protein; VPS4B, AA 98.8 2.8E-08 9.7E-13 98.5 11.1 28 62-89 42-69 (322)
23 2qp9_X Vacuolar protein sortin 98.8 2.8E-08 9.6E-13 99.8 10.8 29 62-90 81-109 (355)
24 3eie_A Vacuolar protein sortin 98.7 1.7E-08 5.7E-13 99.6 8.5 54 30-90 23-76 (322)
25 3cf2_A TER ATPase, transitiona 98.7 9.8E-09 3.3E-13 114.0 7.0 145 61-261 507-676 (806)
26 2r62_A Cell division protease 98.7 8.1E-09 2.8E-13 98.1 4.2 29 62-90 41-69 (268)
27 2bjv_A PSP operon transcriptio 98.6 2.5E-07 8.5E-12 87.9 12.6 48 180-227 100-157 (265)
28 2p65_A Hypothetical protein PF 98.6 1.2E-07 4.1E-12 83.3 8.3 27 64-90 42-68 (187)
29 2dhr_A FTSH; AAA+ protein, hex 98.6 3.3E-07 1.1E-11 96.8 13.1 55 29-90 35-89 (499)
30 2zan_A Vacuolar protein sortin 98.6 1E-07 3.5E-12 98.7 8.3 28 62-89 164-191 (444)
31 1jbk_A CLPB protein; beta barr 98.5 2.2E-07 7.4E-12 81.4 8.9 27 64-90 42-68 (195)
32 2chg_A Replication factor C sm 98.5 1.7E-07 5.8E-12 84.1 8.3 42 179-221 101-142 (226)
33 2v1u_A Cell division control p 98.5 2.5E-07 8.7E-12 90.9 10.3 42 181-222 131-178 (387)
34 1d2n_A N-ethylmaleimide-sensit 98.5 1.8E-07 6.3E-12 89.3 8.8 57 21-90 33-89 (272)
35 3vfd_A Spastin; ATPase, microt 98.5 3.7E-07 1.3E-11 92.3 10.8 28 63-90 146-173 (389)
36 1lv7_A FTSH; alpha/beta domain 98.5 3.5E-07 1.2E-11 86.5 9.7 28 63-90 43-70 (257)
37 3hu3_A Transitional endoplasmi 98.5 2.7E-07 9.2E-12 97.1 9.1 28 62-89 235-262 (489)
38 3d8b_A Fidgetin-like protein 1 98.5 3.7E-07 1.3E-11 91.5 9.4 28 63-90 115-142 (357)
39 3u61_B DNA polymerase accessor 98.5 3.5E-07 1.2E-11 89.3 8.9 58 180-252 105-163 (324)
40 2qby_B CDC6 homolog 3, cell di 98.5 5.3E-07 1.8E-11 89.2 10.2 28 63-90 43-70 (384)
41 3b9p_A CG5977-PA, isoform A; A 98.4 5E-07 1.7E-11 87.0 9.0 28 63-90 52-79 (297)
42 2x8a_A Nuclear valosin-contain 98.4 1.8E-06 6E-11 83.8 12.9 29 62-90 41-69 (274)
43 3pvs_A Replication-associated 98.4 5.9E-07 2E-11 93.4 9.5 25 66-90 51-75 (447)
44 3uk6_A RUVB-like 2; hexameric 98.4 2.2E-06 7.4E-11 84.7 13.0 48 29-90 48-95 (368)
45 1ixz_A ATP-dependent metallopr 98.4 1.7E-06 6E-11 81.5 11.2 29 62-90 46-74 (254)
46 1ojl_A Transcriptional regulat 98.4 5E-07 1.7E-11 88.9 7.7 49 181-229 97-155 (304)
47 1iy2_A ATP-dependent metallopr 98.4 1.7E-06 5.7E-11 83.2 10.8 28 63-90 71-98 (278)
48 4fcw_A Chaperone protein CLPB; 98.3 2E-06 6.7E-11 82.9 10.8 47 181-227 120-176 (311)
49 3te6_A Regulatory protein SIR3 98.3 2.6E-06 8.9E-11 85.1 11.9 28 63-90 43-70 (318)
50 3syl_A Protein CBBX; photosynt 98.3 6.8E-07 2.3E-11 86.3 7.3 28 63-90 65-92 (309)
51 1tue_A Replication protein E1; 98.3 9.2E-07 3.2E-11 83.7 7.7 28 63-90 56-83 (212)
52 1iqp_A RFCS; clamp loader, ext 98.3 1.2E-06 4.1E-11 84.4 8.2 43 179-222 109-151 (327)
53 3pfi_A Holliday junction ATP-d 98.3 3.4E-06 1.2E-10 82.6 11.6 48 29-90 33-80 (338)
54 1fnn_A CDC6P, cell division co 98.3 4.7E-06 1.6E-10 82.2 12.3 42 180-221 125-169 (389)
55 1w4r_A Thymidine kinase; type 98.2 1.1E-06 3.6E-11 82.3 5.8 63 178-252 89-151 (195)
56 1sxj_E Activator 1 40 kDa subu 98.2 2.9E-06 9.9E-11 83.4 9.2 44 178-222 132-175 (354)
57 1hqc_A RUVB; extended AAA-ATPa 98.2 3.4E-06 1.2E-10 81.7 9.1 27 64-90 37-63 (324)
58 3pxi_A Negative regulator of g 98.2 6.8E-06 2.3E-10 90.1 11.2 24 67-90 523-546 (758)
59 1njg_A DNA polymerase III subu 98.1 3.7E-06 1.3E-10 75.8 7.5 26 65-90 45-70 (250)
60 1sxj_D Activator 1 41 kDa subu 98.1 5.3E-06 1.8E-10 81.0 9.2 58 180-252 133-190 (353)
61 1ofh_A ATP-dependent HSL prote 98.1 2.6E-06 8.8E-11 81.6 6.6 28 63-90 48-75 (310)
62 2r44_A Uncharacterized protein 98.1 5E-06 1.7E-10 81.5 8.5 36 65-101 46-81 (331)
63 2qby_A CDC6 homolog 1, cell di 98.1 2.7E-06 9.2E-11 83.4 5.8 28 63-90 43-70 (386)
64 1g5t_A COB(I)alamin adenosyltr 98.1 4.6E-06 1.6E-10 78.0 6.6 129 67-227 30-169 (196)
65 1sxj_C Activator 1 40 kDa subu 98.0 6.3E-06 2.2E-10 81.3 7.4 58 180-252 110-167 (340)
66 1sxj_B Activator 1 37 kDa subu 98.0 8.7E-06 3E-10 78.2 8.0 41 180-221 107-147 (323)
67 1ypw_A Transitional endoplasmi 98.0 8.2E-07 2.8E-11 98.6 0.8 28 63-90 509-536 (806)
68 3nbx_X ATPase RAVA; AAA+ ATPas 98.0 2.5E-06 8.7E-11 90.0 3.1 26 65-90 41-66 (500)
69 1r6b_X CLPA protein; AAA+, N-t 97.9 3E-05 1E-09 84.8 10.7 36 67-103 490-525 (758)
70 2chq_A Replication factor C sm 97.9 3.4E-06 1.2E-10 80.9 2.1 24 67-90 40-63 (319)
71 1qvr_A CLPB protein; coiled co 97.9 4.9E-05 1.7E-09 84.6 11.5 61 11-90 152-216 (854)
72 1sxj_A Activator 1 95 kDa subu 97.9 9.7E-06 3.3E-10 85.2 5.5 26 64-89 76-101 (516)
73 1g8p_A Magnesium-chelatase 38 97.9 9.1E-06 3.1E-10 79.4 4.9 26 65-90 45-70 (350)
74 1um8_A ATP-dependent CLP prote 97.9 2.7E-05 9.4E-10 77.8 8.4 27 64-90 71-97 (376)
75 1ypw_A Transitional endoplasmi 97.8 8.1E-05 2.8E-09 82.7 12.1 29 62-90 235-263 (806)
76 3hws_A ATP-dependent CLP prote 97.8 6.5E-05 2.2E-09 74.8 10.2 28 63-90 49-76 (363)
77 1u0j_A DNA replication protein 97.8 1.8E-05 6.2E-10 77.3 6.0 70 179-252 147-228 (267)
78 2r8r_A Sensor protein; KDPD, P 97.8 1.7E-05 5.8E-10 75.8 5.6 71 179-251 83-161 (228)
79 1jr3_A DNA polymerase III subu 97.8 2.5E-05 8.6E-10 76.8 6.8 26 65-90 38-63 (373)
80 1qvr_A CLPB protein; coiled co 97.8 6.4E-05 2.2E-09 83.7 10.1 25 66-90 589-613 (854)
81 3upu_A ATP-dependent DNA helic 97.8 0.00014 4.8E-09 75.1 11.9 67 25-111 25-91 (459)
82 1a5t_A Delta prime, HOLB; zinc 97.7 7E-05 2.4E-09 74.1 8.5 45 28-90 5-49 (334)
83 3m6a_A ATP-dependent protease 97.7 3E-05 1E-09 82.3 5.5 37 64-101 107-143 (543)
84 1w5s_A Origin recognition comp 97.7 5.6E-05 1.9E-09 75.2 7.1 27 64-90 49-77 (412)
85 3e1s_A Exodeoxyribonuclease V, 97.7 0.00019 6.4E-09 76.9 11.4 46 66-112 205-250 (574)
86 2vhj_A Ntpase P4, P4; non- hyd 97.7 0.00019 6.4E-09 72.1 10.6 23 66-88 124-146 (331)
87 3cmu_A Protein RECA, recombina 97.6 9.5E-05 3.3E-09 88.9 8.9 42 61-103 1423-1464(2050)
88 1ye8_A Protein THEP1, hypothet 97.6 0.0007 2.4E-08 61.4 12.2 23 68-90 3-25 (178)
89 2orw_A Thymidine kinase; TMTK, 97.5 2.9E-05 9.8E-10 71.0 1.8 61 180-252 76-137 (184)
90 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00016 5.5E-09 79.0 6.9 28 63-90 205-232 (758)
91 2fna_A Conserved hypothetical 97.4 0.00041 1.4E-08 67.0 8.7 25 66-90 31-55 (357)
92 2orv_A Thymidine kinase; TP4A 97.3 0.00026 9E-09 67.8 6.2 38 178-220 88-125 (234)
93 2ehv_A Hypothetical protein PH 97.3 0.0003 1E-08 65.0 6.2 43 179-221 134-182 (251)
94 2c9o_A RUVB-like 1; hexameric 97.3 0.00025 8.6E-09 73.2 6.0 48 29-90 41-88 (456)
95 2j9r_A Thymidine kinase; TK1, 97.3 0.0007 2.4E-08 64.0 8.5 62 180-252 101-162 (214)
96 3pxg_A Negative regulator of g 97.2 0.00043 1.5E-08 71.9 7.4 27 63-89 199-225 (468)
97 3cmu_A Protein RECA, recombina 97.2 0.00077 2.6E-08 81.2 10.3 41 62-103 1078-1118(2050)
98 2b8t_A Thymidine kinase; deoxy 97.2 0.00029 9.9E-09 66.8 5.3 61 180-252 89-150 (223)
99 1nlf_A Regulatory protein REPA 97.2 0.0026 9E-08 60.8 11.9 48 174-221 127-181 (279)
100 2qen_A Walker-type ATPase; unk 97.2 0.0017 5.9E-08 62.5 10.6 24 66-89 32-55 (350)
101 3tif_A Uncharacterized ABC tra 97.2 0.003 1E-07 59.7 11.8 49 172-220 155-205 (235)
102 3e2i_A Thymidine kinase; Zn-bi 97.1 0.00053 1.8E-08 65.1 6.1 131 68-252 31-162 (219)
103 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0026 8.9E-08 57.6 10.3 43 179-221 120-168 (235)
104 2pcj_A ABC transporter, lipopr 97.0 0.007 2.4E-07 56.7 12.9 49 172-220 150-199 (224)
105 1vpl_A ABC transporter, ATP-bi 97.0 0.01 3.6E-07 56.9 14.1 49 172-220 156-205 (256)
106 4akg_A Glutathione S-transfera 97.0 0.00097 3.3E-08 82.4 7.9 39 65-103 1267-1305(2695)
107 4gp7_A Metallophosphoesterase; 97.0 0.0013 4.4E-08 58.6 6.8 49 172-220 93-158 (171)
108 3gfo_A Cobalt import ATP-bindi 97.0 0.0085 2.9E-07 58.2 13.1 50 172-221 153-204 (275)
109 1xx6_A Thymidine kinase; NESG, 97.0 0.0012 4E-08 61.0 6.6 62 179-252 80-142 (191)
110 3pxi_A Negative regulator of g 96.9 0.0014 4.7E-08 71.8 7.7 27 63-89 199-225 (758)
111 2olj_A Amino acid ABC transpor 96.9 0.023 7.8E-07 54.8 15.2 49 172-220 169-218 (263)
112 1sgw_A Putative ABC transporte 96.8 0.0048 1.6E-07 57.8 9.7 49 172-220 143-192 (214)
113 1n0w_A DNA repair protein RAD5 96.8 0.0045 1.5E-07 56.8 9.3 27 63-89 22-48 (243)
114 3f9v_A Minichromosome maintena 96.8 0.00013 4.3E-09 78.5 -1.9 24 67-90 329-352 (595)
115 2nq2_C Hypothetical ABC transp 96.7 0.012 4.2E-07 56.2 12.1 49 172-220 138-188 (253)
116 1cr0_A DNA primase/helicase; R 96.7 0.01 3.5E-07 57.0 11.5 37 63-99 33-69 (296)
117 1ny5_A Transcriptional regulat 96.7 0.009 3.1E-07 60.4 11.5 53 180-232 231-293 (387)
118 2d2e_A SUFC protein; ABC-ATPas 96.7 0.014 4.8E-07 55.5 11.9 49 172-220 153-202 (250)
119 3llm_A ATP-dependent RNA helic 96.7 0.049 1.7E-06 50.5 15.4 43 65-107 76-122 (235)
120 2fz4_A DNA repair protein RAD2 96.7 0.0066 2.3E-07 57.1 9.5 23 67-89 110-132 (237)
121 2cvh_A DNA repair and recombin 96.7 0.015 5.1E-07 52.4 11.5 25 63-87 18-42 (220)
122 2qi9_C Vitamin B12 import ATP- 96.6 0.0094 3.2E-07 57.0 10.4 49 172-220 136-192 (249)
123 2dr3_A UPF0273 protein PH0284; 96.6 0.011 3.7E-07 54.3 10.0 44 179-222 127-174 (247)
124 4a74_A DNA repair and recombin 96.5 0.0055 1.9E-07 55.6 7.5 25 65-89 25-49 (231)
125 3cmw_A Protein RECA, recombina 96.5 0.0076 2.6E-07 71.8 10.5 79 317-395 1460-1578(1706)
126 1z47_A CYSA, putative ABC-tran 96.4 0.038 1.3E-06 55.7 13.8 49 172-220 155-205 (355)
127 1u94_A RECA protein, recombina 96.4 0.015 5.1E-07 58.6 10.8 39 62-101 60-98 (356)
128 3rlf_A Maltose/maltodextrin im 96.4 0.03 1E-06 57.1 13.1 49 172-220 143-193 (381)
129 3k1j_A LON protease, ATP-depen 96.4 0.0071 2.4E-07 64.7 8.9 26 65-90 60-85 (604)
130 1v43_A Sugar-binding transport 96.3 0.024 8.1E-07 57.6 11.8 49 172-220 151-201 (372)
131 3tui_C Methionine import ATP-b 96.3 0.01 3.6E-07 60.2 9.0 49 172-220 173-223 (366)
132 1in4_A RUVB, holliday junction 96.3 0.0022 7.4E-08 63.3 3.8 67 8-90 4-76 (334)
133 3j16_B RLI1P; ribosome recycli 96.3 0.012 4.2E-07 63.4 9.9 49 172-220 231-280 (608)
134 1yqt_A RNAse L inhibitor; ATP- 96.3 0.013 4.3E-07 62.2 9.7 49 172-220 168-217 (538)
135 1vec_A ATP-dependent RNA helic 96.2 0.071 2.4E-06 47.5 13.3 45 14-83 14-58 (206)
136 1g29_1 MALK, maltose transport 96.2 0.054 1.8E-06 54.9 13.8 49 172-220 149-199 (372)
137 2eyu_A Twitching motility prot 96.2 0.021 7.3E-07 54.8 10.3 43 172-220 90-132 (261)
138 2it1_A 362AA long hypothetical 96.2 0.049 1.7E-06 55.0 13.3 49 172-220 143-193 (362)
139 4g1u_C Hemin import ATP-bindin 96.2 0.028 9.6E-07 54.1 11.0 49 172-220 151-207 (266)
140 1mv5_A LMRA, multidrug resista 96.2 0.021 7.2E-07 54.0 9.9 48 172-220 149-197 (243)
141 2gno_A DNA polymerase III, gam 96.2 0.0068 2.3E-07 59.7 6.6 25 65-89 18-42 (305)
142 2zr9_A Protein RECA, recombina 96.1 0.022 7.7E-07 57.0 10.2 35 64-99 60-94 (349)
143 3d31_A Sulfate/molybdate ABC t 96.1 0.052 1.8E-06 54.5 12.8 49 172-220 137-187 (348)
144 2z43_A DNA repair and recombin 96.1 0.009 3.1E-07 58.8 7.1 27 63-89 105-131 (324)
145 2z0m_A 337AA long hypothetical 96.1 0.041 1.4E-06 52.3 11.5 47 15-86 6-52 (337)
146 3bk7_A ABC transporter ATP-bin 96.0 0.063 2.2E-06 57.8 13.8 49 172-220 481-531 (607)
147 3lfu_A DNA helicase II; SF1 he 96.0 0.086 3E-06 55.8 14.6 40 177-220 210-249 (647)
148 3thx_A DNA mismatch repair pro 96.0 0.018 6.2E-07 65.0 9.6 43 178-220 739-784 (934)
149 2cbz_A Multidrug resistance-as 96.0 0.019 6.6E-07 54.2 8.4 48 172-220 137-188 (237)
150 1hv8_A Putative ATP-dependent 95.9 0.055 1.9E-06 52.0 11.8 77 13-113 16-97 (367)
151 2yyz_A Sugar ABC transporter, 95.9 0.026 8.8E-07 57.0 9.7 49 172-220 143-193 (359)
152 3jvv_A Twitching mobility prot 95.9 0.0016 5.5E-08 65.7 0.7 28 65-92 122-150 (356)
153 3nh6_A ATP-binding cassette SU 95.9 0.0055 1.9E-07 60.6 4.4 48 172-220 200-248 (306)
154 1tf7_A KAIC; homohexamer, hexa 95.9 0.029 9.9E-07 58.8 10.2 49 173-221 364-417 (525)
155 2i1q_A DNA repair and recombin 95.9 0.016 5.6E-07 56.4 7.7 27 63-89 96-122 (322)
156 3fvq_A Fe(3+) IONS import ATP- 95.8 0.054 1.9E-06 54.7 11.6 49 172-220 148-198 (359)
157 1yqt_A RNAse L inhibitor; ATP- 95.8 0.069 2.4E-06 56.5 12.9 49 172-220 411-461 (538)
158 3dzd_A Transcriptional regulat 95.8 0.013 4.5E-07 58.9 7.0 53 180-232 222-284 (368)
159 4akg_A Glutathione S-transfera 95.8 0.05 1.7E-06 67.6 13.2 40 64-104 644-683 (2695)
160 3bk7_A ABC transporter ATP-bin 95.8 0.025 8.5E-07 60.9 9.5 49 172-220 238-287 (607)
161 1oxx_K GLCV, glucose, ABC tran 95.8 0.02 6.7E-07 57.7 8.1 49 172-220 150-200 (353)
162 3dkp_A Probable ATP-dependent 95.8 0.042 1.4E-06 50.8 9.8 48 179-226 174-225 (245)
163 3hr8_A Protein RECA; alpha and 95.8 0.03 1E-06 56.6 9.3 35 64-99 60-94 (356)
164 3fht_A ATP-dependent RNA helic 95.8 0.058 2E-06 52.9 11.3 78 13-113 35-118 (412)
165 2pjz_A Hypothetical protein ST 95.8 0.029 9.9E-07 54.0 8.8 46 172-220 138-184 (263)
166 2o8b_B DNA mismatch repair pro 95.7 0.049 1.7E-06 62.1 11.9 49 173-221 861-912 (1022)
167 3ozx_A RNAse L inhibitor; ATP 95.7 0.025 8.5E-07 60.0 8.6 48 172-220 148-196 (538)
168 3lw7_A Adenylate kinase relate 95.6 0.1 3.5E-06 44.4 11.0 22 67-89 3-24 (179)
169 1w36_D RECD, exodeoxyribonucle 95.6 0.031 1.1E-06 59.9 9.1 46 66-111 165-213 (608)
170 1qde_A EIF4A, translation init 95.5 0.18 6E-06 45.7 12.9 42 15-81 26-67 (224)
171 2pze_A Cystic fibrosis transme 95.5 0.021 7.2E-07 53.5 6.8 48 172-220 140-189 (229)
172 1g41_A Heat shock protein HSLU 95.5 0.044 1.5E-06 56.9 9.7 29 63-91 48-76 (444)
173 3thx_B DNA mismatch repair pro 95.5 0.052 1.8E-06 61.2 10.9 43 178-220 750-795 (918)
174 3b5x_A Lipid A export ATP-bind 95.5 0.046 1.6E-06 58.1 10.0 48 172-220 490-538 (582)
175 1xp8_A RECA protein, recombina 95.5 0.066 2.3E-06 54.1 10.5 38 62-100 71-108 (366)
176 3cmw_A Protein RECA, recombina 95.4 0.053 1.8E-06 64.7 11.2 40 62-102 31-70 (1706)
177 2r6a_A DNAB helicase, replicat 95.4 0.045 1.5E-06 56.3 9.4 39 63-101 201-239 (454)
178 1pzn_A RAD51, DNA repair and r 95.4 0.044 1.5E-06 54.7 8.9 27 63-89 129-155 (349)
179 1tf7_A KAIC; homohexamer, hexa 95.3 0.11 3.7E-06 54.5 12.1 43 179-221 137-185 (525)
180 2ewv_A Twitching motility prot 95.3 0.053 1.8E-06 54.7 9.4 32 67-98 138-169 (372)
181 2yl4_A ATP-binding cassette SU 95.2 0.1 3.5E-06 55.6 11.5 48 172-220 493-541 (595)
182 1v5w_A DMC1, meiotic recombina 95.2 0.042 1.4E-06 54.5 8.0 26 64-89 121-146 (343)
183 1fuu_A Yeast initiation factor 95.1 0.089 3.1E-06 51.2 10.1 46 13-83 31-76 (394)
184 3qf4_B Uncharacterized ABC tra 95.1 0.027 9.3E-07 60.2 6.8 49 172-221 501-550 (598)
185 3bor_A Human initiation factor 95.1 0.16 5.5E-06 46.9 11.2 47 179-226 172-219 (237)
186 3j16_B RLI1P; ribosome recycli 95.1 0.063 2.1E-06 57.8 9.5 49 172-220 477-527 (608)
187 1z6t_A APAF-1, apoptotic prote 95.0 0.17 5.9E-06 52.8 12.6 26 64-89 146-171 (591)
188 3b60_A Lipid A export ATP-bind 95.0 0.17 5.9E-06 53.6 12.7 49 172-221 490-539 (582)
189 2iw3_A Elongation factor 3A; a 95.0 0.096 3.3E-06 59.5 10.9 46 172-220 558-604 (986)
190 2a5y_B CED-4; apoptosis; HET: 94.9 0.13 4.3E-06 54.1 11.2 24 64-87 151-174 (549)
191 3ozx_A RNAse L inhibitor; ATP 94.9 0.093 3.2E-06 55.6 10.1 49 172-220 395-445 (538)
192 3fmo_B ATP-dependent RNA helic 94.8 0.089 3E-06 51.0 8.9 46 13-81 102-147 (300)
193 3qf4_A ABC transporter, ATP-bi 94.8 0.036 1.2E-06 59.1 6.6 48 172-220 489-537 (587)
194 4f4c_A Multidrug resistance pr 94.7 0.16 5.6E-06 59.2 12.4 48 172-220 564-612 (1321)
195 4a82_A Cystic fibrosis transme 94.7 0.046 1.6E-06 58.1 7.2 49 172-221 487-536 (578)
196 1wb9_A DNA mismatch repair pro 94.6 0.14 4.6E-06 57.0 10.9 45 177-221 683-730 (800)
197 1qhx_A CPT, protein (chloramph 94.6 0.02 6.8E-07 50.1 3.5 26 65-90 3-28 (178)
198 3iij_A Coilin-interacting nucl 94.6 0.025 8.5E-07 49.9 4.1 26 65-90 11-36 (180)
199 4b3f_X DNA-binding protein smu 94.6 0.066 2.3E-06 57.5 8.2 45 67-112 207-255 (646)
200 2eyq_A TRCF, transcription-rep 94.6 0.84 2.9E-05 52.6 17.6 53 12-83 590-642 (1151)
201 3trf_A Shikimate kinase, SK; a 94.6 0.022 7.6E-07 50.2 3.6 26 65-90 5-30 (185)
202 1kag_A SKI, shikimate kinase I 94.5 0.023 7.9E-07 49.5 3.6 25 66-90 5-29 (173)
203 2q6t_A DNAB replication FORK h 94.5 0.11 3.8E-06 53.2 9.2 37 66-102 201-237 (444)
204 3kb2_A SPBC2 prophage-derived 94.4 0.024 8.1E-07 49.0 3.3 24 67-90 3-26 (173)
205 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.11 3.6E-06 51.6 8.5 34 65-99 171-204 (330)
206 2xgj_A ATP-dependent RNA helic 94.3 0.37 1.2E-05 54.8 13.6 68 19-112 80-151 (1010)
207 3lda_A DNA repair protein RAD5 94.3 0.09 3.1E-06 53.8 7.9 27 63-89 176-202 (400)
208 1y63_A LMAJ004144AAA protein; 94.2 0.031 1.1E-06 49.8 3.9 24 65-88 10-33 (184)
209 3vaa_A Shikimate kinase, SK; s 94.0 0.034 1.2E-06 50.2 3.7 28 63-90 23-50 (199)
210 3l9o_A ATP-dependent RNA helic 94.0 0.41 1.4E-05 55.0 13.4 69 18-112 177-249 (1108)
211 2va8_A SSO2462, SKI2-type heli 94.0 1.3 4.3E-05 47.7 16.6 50 13-86 17-67 (715)
212 2gk6_A Regulator of nonsense t 94.0 0.089 3E-06 56.4 7.4 45 67-111 197-245 (624)
213 1kht_A Adenylate kinase; phosp 93.9 0.069 2.4E-06 46.8 5.4 25 66-90 4-28 (192)
214 2rhm_A Putative kinase; P-loop 93.8 0.037 1.3E-06 48.8 3.5 27 64-90 4-30 (193)
215 1kgd_A CASK, peripheral plasma 93.8 0.042 1.4E-06 48.9 3.8 26 65-90 5-30 (180)
216 3g5u_A MCG1178, multidrug resi 93.7 0.46 1.6E-05 55.3 13.4 48 172-220 536-584 (1284)
217 1ewq_A DNA mismatch repair pro 93.7 0.19 6.5E-06 55.6 9.6 43 178-220 653-697 (765)
218 1nks_A Adenylate kinase; therm 93.7 0.05 1.7E-06 47.7 4.1 24 67-90 3-26 (194)
219 3i5x_A ATP-dependent RNA helic 93.6 1.6 5.3E-05 45.2 16.0 45 15-82 84-128 (563)
220 2xau_A PRE-mRNA-splicing facto 93.6 0.56 1.9E-05 51.7 13.2 22 66-87 110-131 (773)
221 3gd7_A Fusion complex of cysti 93.6 0.094 3.2E-06 53.5 6.4 48 172-220 165-213 (390)
222 2zj8_A DNA helicase, putative 93.6 0.12 4.2E-06 55.9 7.7 72 14-110 11-88 (720)
223 1knq_A Gluconate kinase; ALFA/ 93.5 0.05 1.7E-06 47.6 3.7 25 65-89 8-32 (175)
224 1ly1_A Polynucleotide kinase; 93.5 0.041 1.4E-06 47.8 3.1 22 66-87 3-24 (181)
225 3vkw_A Replicase large subunit 93.4 0.11 3.8E-06 54.0 6.8 23 65-87 161-183 (446)
226 2qor_A Guanylate kinase; phosp 93.4 0.052 1.8E-06 49.1 3.8 27 64-90 11-37 (204)
227 3a00_A Guanylate kinase, GMP k 93.4 0.051 1.7E-06 48.6 3.6 25 66-90 2-26 (186)
228 1yks_A Genome polyprotein [con 93.3 0.36 1.2E-05 49.3 10.3 47 178-225 97-144 (440)
229 3t61_A Gluconokinase; PSI-biol 93.3 0.051 1.8E-06 48.8 3.6 25 65-89 18-42 (202)
230 1zp6_A Hypothetical protein AT 93.3 0.045 1.5E-06 48.4 3.2 24 65-88 9-32 (191)
231 3fb4_A Adenylate kinase; psych 93.3 0.047 1.6E-06 49.4 3.4 23 68-90 3-25 (216)
232 4eun_A Thermoresistant glucoki 93.3 0.054 1.9E-06 48.8 3.7 26 64-89 28-53 (200)
233 1e6c_A Shikimate kinase; phosp 93.3 0.049 1.7E-06 47.2 3.3 25 66-90 3-27 (173)
234 3sfz_A APAF-1, apoptotic pepti 93.3 0.26 8.8E-06 55.3 10.0 27 63-89 145-171 (1249)
235 3tr0_A Guanylate kinase, GMP k 93.3 0.055 1.9E-06 48.2 3.7 24 66-89 8-31 (205)
236 2vli_A Antibiotic resistance p 93.2 0.04 1.4E-06 48.3 2.7 26 65-90 5-30 (183)
237 1tev_A UMP-CMP kinase; ploop, 93.1 0.053 1.8E-06 47.6 3.3 26 65-90 3-28 (196)
238 1zuh_A Shikimate kinase; alpha 93.1 0.059 2E-06 46.9 3.5 26 65-90 7-32 (168)
239 3dl0_A Adenylate kinase; phosp 93.1 0.052 1.8E-06 49.2 3.2 22 68-89 3-24 (216)
240 1lvg_A Guanylate kinase, GMP k 93.0 0.058 2E-06 49.0 3.6 26 65-90 4-29 (198)
241 2cdn_A Adenylate kinase; phosp 93.0 0.07 2.4E-06 47.9 4.0 27 64-90 19-45 (201)
242 1via_A Shikimate kinase; struc 93.0 0.056 1.9E-06 47.4 3.3 25 66-90 5-29 (175)
243 3kl4_A SRP54, signal recogniti 93.0 0.38 1.3E-05 49.7 10.0 35 64-99 96-130 (433)
244 3cm0_A Adenylate kinase; ATP-b 93.0 0.057 2E-06 47.5 3.3 24 66-89 5-28 (186)
245 3uie_A Adenylyl-sulfate kinase 93.0 0.062 2.1E-06 48.4 3.6 27 64-90 24-50 (200)
246 2c95_A Adenylate kinase 1; tra 93.0 0.065 2.2E-06 47.3 3.7 26 65-90 9-34 (196)
247 2j41_A Guanylate kinase; GMP, 92.9 0.063 2.1E-06 47.9 3.5 25 65-89 6-30 (207)
248 1htw_A HI0065; nucleotide-bind 92.9 0.062 2.1E-06 47.7 3.4 35 66-102 34-68 (158)
249 3tau_A Guanylate kinase, GMP k 92.9 0.064 2.2E-06 48.9 3.6 26 65-90 8-33 (208)
250 3bh0_A DNAB-like replicative h 92.9 0.59 2E-05 45.6 10.8 38 64-102 67-104 (315)
251 1cke_A CK, MSSA, protein (cyti 92.9 0.059 2E-06 49.0 3.3 24 66-89 6-29 (227)
252 2jaq_A Deoxyguanosine kinase; 92.9 0.061 2.1E-06 47.7 3.3 23 68-90 3-25 (205)
253 2plr_A DTMP kinase, probable t 92.8 0.061 2.1E-06 47.9 3.3 26 66-91 5-30 (213)
254 1svm_A Large T antigen; AAA+ f 92.8 0.07 2.4E-06 54.2 4.1 29 61-89 165-193 (377)
255 1zak_A Adenylate kinase; ATP:A 92.8 0.07 2.4E-06 48.7 3.7 27 64-90 4-30 (222)
256 2iyv_A Shikimate kinase, SK; t 92.8 0.072 2.5E-06 46.9 3.6 24 67-90 4-27 (184)
257 1qf9_A UMP/CMP kinase, protein 92.7 0.063 2.1E-06 47.0 3.2 26 65-90 6-31 (194)
258 1ex7_A Guanylate kinase; subst 92.7 0.065 2.2E-06 49.1 3.4 24 66-89 2-25 (186)
259 2pbr_A DTMP kinase, thymidylat 92.7 0.067 2.3E-06 47.0 3.3 23 68-90 3-25 (195)
260 2z0h_A DTMP kinase, thymidylat 92.7 0.067 2.3E-06 47.3 3.4 23 68-90 3-25 (197)
261 1gvn_B Zeta; postsegregational 92.6 0.18 6.2E-06 48.7 6.5 27 64-90 32-58 (287)
262 2pt5_A Shikimate kinase, SK; a 92.6 0.072 2.5E-06 46.0 3.3 23 68-90 3-25 (168)
263 2bwj_A Adenylate kinase 5; pho 92.6 0.073 2.5E-06 47.1 3.4 26 65-90 12-37 (199)
264 2bbw_A Adenylate kinase 4, AK4 92.5 0.078 2.7E-06 49.4 3.8 26 64-89 26-51 (246)
265 4a4z_A Antiviral helicase SKI2 92.5 0.28 9.6E-06 55.7 8.9 67 20-112 34-104 (997)
266 2v6i_A RNA helicase; membrane, 92.5 0.44 1.5E-05 48.5 9.6 49 178-226 91-139 (431)
267 3fho_A ATP-dependent RNA helic 92.4 0.073 2.5E-06 55.3 3.7 48 65-112 158-211 (508)
268 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.072 2.5E-06 46.5 3.1 23 67-89 25-47 (149)
269 2yvu_A Probable adenylyl-sulfa 92.4 0.12 4.1E-06 45.7 4.6 28 64-91 12-39 (186)
270 1ukz_A Uridylate kinase; trans 92.3 0.085 2.9E-06 47.2 3.6 26 64-89 14-39 (203)
271 2wwf_A Thymidilate kinase, put 92.2 0.089 3.1E-06 47.1 3.6 26 65-90 10-35 (212)
272 1nn5_A Similar to deoxythymidy 92.2 0.093 3.2E-06 47.0 3.8 26 65-90 9-34 (215)
273 3c8u_A Fructokinase; YP_612366 92.2 0.11 3.9E-06 47.1 4.3 38 65-102 22-61 (208)
274 1ak2_A Adenylate kinase isoenz 92.2 0.095 3.2E-06 48.5 3.9 27 64-90 15-41 (233)
275 1aky_A Adenylate kinase; ATP:A 92.2 0.094 3.2E-06 47.8 3.8 26 65-90 4-29 (220)
276 2jlq_A Serine protease subunit 92.2 0.57 2E-05 47.8 10.0 49 178-226 108-156 (451)
277 3kta_A Chromosome segregation 92.1 0.082 2.8E-06 46.5 3.2 24 67-90 28-51 (182)
278 3ney_A 55 kDa erythrocyte memb 92.1 0.099 3.4E-06 48.4 3.8 27 64-90 18-44 (197)
279 1rz3_A Hypothetical protein rb 92.1 0.18 6.3E-06 45.5 5.6 26 65-90 22-47 (201)
280 1c9k_A COBU, adenosylcobinamid 92.1 0.2 6.8E-06 45.8 5.8 21 68-88 2-22 (180)
281 3g5u_A MCG1178, multidrug resi 92.0 1 3.5E-05 52.4 13.0 48 172-220 1181-1229(1284)
282 1s96_A Guanylate kinase, GMP k 92.0 0.095 3.3E-06 48.9 3.6 27 64-90 15-41 (219)
283 3b6e_A Interferon-induced heli 91.9 0.12 4.3E-06 45.9 4.2 50 15-89 23-72 (216)
284 2xzl_A ATP-dependent helicase 91.9 0.21 7.1E-06 55.5 6.8 46 67-112 377-426 (802)
285 2bdt_A BH3686; alpha-beta prot 91.8 0.091 3.1E-06 46.5 3.2 20 68-87 5-24 (189)
286 2if2_A Dephospho-COA kinase; a 91.8 0.087 3E-06 47.2 3.0 22 67-89 3-24 (204)
287 1zd8_A GTP:AMP phosphotransfer 91.8 0.096 3.3E-06 48.1 3.4 26 65-90 7-32 (227)
288 2iut_A DNA translocase FTSK; n 91.8 0.76 2.6E-05 49.2 10.7 24 66-89 215-238 (574)
289 1q57_A DNA primase/helicase; d 91.7 0.65 2.2E-05 48.1 10.0 39 64-102 241-279 (503)
290 2v54_A DTMP kinase, thymidylat 91.7 0.11 3.6E-06 46.3 3.5 25 65-89 4-28 (204)
291 2whx_A Serine protease/ntpase/ 91.7 0.71 2.4E-05 49.6 10.4 48 178-225 275-322 (618)
292 2wjy_A Regulator of nonsense t 91.6 0.27 9.2E-06 54.6 7.2 45 67-111 373-421 (800)
293 2p5t_B PEZT; postsegregational 91.6 0.083 2.8E-06 49.7 2.7 28 63-90 30-57 (253)
294 1jjv_A Dephospho-COA kinase; P 91.6 0.092 3.2E-06 47.2 2.9 21 67-87 4-24 (206)
295 2gxq_A Heat resistant RNA depe 91.5 0.39 1.3E-05 42.5 7.0 46 14-84 12-57 (207)
296 3asz_A Uridine kinase; cytidin 91.5 0.11 3.8E-06 46.8 3.3 25 66-90 7-31 (211)
297 3pey_A ATP-dependent RNA helic 91.4 0.51 1.7E-05 45.6 8.3 50 13-85 15-64 (395)
298 1vma_A Cell division protein F 91.3 0.73 2.5E-05 45.2 9.3 35 64-99 103-137 (306)
299 2qt1_A Nicotinamide riboside k 91.3 0.11 3.9E-06 46.7 3.2 25 65-89 21-45 (207)
300 3umf_A Adenylate kinase; rossm 91.3 0.13 4.4E-06 48.2 3.6 29 62-90 26-54 (217)
301 3tlx_A Adenylate kinase 2; str 91.2 0.13 4.5E-06 48.2 3.6 27 64-90 28-54 (243)
302 3bgw_A DNAB-like replicative h 91.2 0.68 2.3E-05 47.7 9.3 36 66-102 198-233 (444)
303 3a4m_A L-seryl-tRNA(SEC) kinas 91.1 0.16 5.3E-06 48.1 4.1 26 65-90 4-29 (260)
304 2pez_A Bifunctional 3'-phospho 91.1 0.14 4.7E-06 45.0 3.5 26 65-90 5-30 (179)
305 1z6g_A Guanylate kinase; struc 91.0 0.13 4.6E-06 47.3 3.5 27 64-90 22-48 (218)
306 2r2a_A Uncharacterized protein 91.0 0.15 5E-06 47.1 3.7 22 67-88 7-28 (199)
307 1e4v_A Adenylate kinase; trans 91.0 0.13 4.3E-06 46.8 3.2 22 68-89 3-24 (214)
308 2zts_A Putative uncharacterize 91.0 0.13 4.4E-06 46.9 3.3 43 179-221 134-182 (251)
309 1vt4_I APAF-1 related killer D 90.9 1 3.5E-05 51.9 11.2 24 65-88 150-173 (1221)
310 2ze6_A Isopentenyl transferase 90.9 0.13 4.5E-06 48.6 3.3 24 67-90 3-26 (253)
311 3qks_A DNA double-strand break 90.9 0.13 4.3E-06 47.1 3.1 25 66-90 24-48 (203)
312 2xb4_A Adenylate kinase; ATP-b 90.9 0.13 4.6E-06 47.3 3.3 23 68-90 3-25 (223)
313 3be4_A Adenylate kinase; malar 90.8 0.13 4.5E-06 47.0 3.2 25 66-90 6-30 (217)
314 1m7g_A Adenylylsulfate kinase; 90.7 0.16 5.5E-06 46.1 3.7 26 65-90 25-50 (211)
315 1uf9_A TT1252 protein; P-loop, 90.7 0.14 4.9E-06 45.3 3.3 25 64-88 7-31 (203)
316 1q0u_A Bstdead; DEAD protein, 90.6 0.93 3.2E-05 40.9 8.7 76 13-113 14-95 (219)
317 3sqw_A ATP-dependent RNA helic 90.5 2.7 9.3E-05 43.9 13.4 44 17-83 35-78 (579)
318 4f4c_A Multidrug resistance pr 90.4 0.5 1.7E-05 55.2 8.3 48 172-220 1227-1275(1321)
319 2v9p_A Replication protein E1; 90.1 0.19 6.3E-06 49.6 3.8 28 62-89 123-150 (305)
320 3ake_A Cytidylate kinase; CMP 90.0 0.18 6.3E-06 44.8 3.4 24 67-90 4-27 (208)
321 3lnc_A Guanylate kinase, GMP k 90.0 0.1 3.6E-06 47.9 1.8 25 65-89 27-52 (231)
322 2z83_A Helicase/nucleoside tri 90.0 0.88 3E-05 46.6 8.9 48 178-226 110-158 (459)
323 2grj_A Dephospho-COA kinase; T 89.9 0.19 6.4E-06 45.9 3.4 24 66-89 13-36 (192)
324 1znw_A Guanylate kinase, GMP k 89.7 0.23 7.7E-06 45.0 3.7 24 66-89 21-44 (207)
325 1uj2_A Uridine-cytidine kinase 89.6 0.19 6.6E-06 47.0 3.3 26 65-90 22-47 (252)
326 2i3b_A HCR-ntpase, human cance 89.4 0.21 7.1E-06 45.5 3.3 23 68-90 4-26 (189)
327 2wv9_A Flavivirin protease NS2 89.4 1.5 5.2E-05 47.6 10.6 48 178-226 330-378 (673)
328 2oap_1 GSPE-2, type II secreti 89.4 0.19 6.6E-06 52.9 3.5 27 64-90 259-285 (511)
329 1odf_A YGR205W, hypothetical 3 89.4 0.48 1.6E-05 46.0 6.0 26 65-90 31-56 (290)
330 3qkt_A DNA double-strand break 89.3 0.19 6.4E-06 49.5 3.1 21 69-89 27-47 (339)
331 3sr0_A Adenylate kinase; phosp 89.3 0.21 7.1E-06 46.2 3.2 23 68-90 3-25 (206)
332 2ged_A SR-beta, signal recogni 89.1 0.4 1.4E-05 41.8 4.8 23 66-88 49-71 (193)
333 2jeo_A Uridine-cytidine kinase 89.0 0.23 7.8E-06 46.3 3.4 22 68-89 28-49 (245)
334 3nwj_A ATSK2; P loop, shikimat 89.0 0.26 8.7E-06 47.0 3.7 26 65-90 48-73 (250)
335 3b85_A Phosphate starvation-in 88.9 0.19 6.5E-06 46.5 2.6 43 172-219 114-156 (208)
336 2oxc_A Probable ATP-dependent 88.9 1.9 6.5E-05 39.2 9.5 74 15-113 36-115 (230)
337 1jr3_D DNA polymerase III, del 88.8 0.54 1.8E-05 45.8 6.0 26 65-90 18-43 (343)
338 4e22_A Cytidylate kinase; P-lo 88.8 0.24 8.2E-06 46.6 3.3 24 66-89 28-51 (252)
339 2onk_A Molybdate/tungstate ABC 88.6 0.28 9.5E-06 46.4 3.6 32 68-100 27-58 (240)
340 1p9r_A General secretion pathw 88.5 0.26 8.8E-06 50.6 3.5 34 65-99 166-200 (418)
341 3vkg_A Dynein heavy chain, cyt 88.5 0.22 7.4E-06 62.8 3.5 37 65-101 1304-1340(3245)
342 1ji0_A ABC transporter; ATP bi 88.5 0.26 8.9E-06 46.3 3.3 49 172-220 149-198 (240)
343 2qmh_A HPR kinase/phosphorylas 88.4 0.22 7.4E-06 46.7 2.7 26 64-89 33-58 (205)
344 3iuy_A Probable ATP-dependent 88.4 0.77 2.6E-05 41.6 6.4 43 15-82 32-74 (228)
345 2pl3_A Probable ATP-dependent 88.4 0.88 3E-05 41.4 6.8 44 14-82 36-79 (236)
346 1gtv_A TMK, thymidylate kinase 88.3 0.14 4.7E-06 45.9 1.3 23 68-90 3-25 (214)
347 1kao_A RAP2A; GTP-binding prot 88.3 0.28 9.6E-06 41.0 3.2 22 67-88 5-26 (167)
348 2ce2_X GTPase HRAS; signaling 88.2 0.28 9.5E-06 40.9 3.0 22 67-88 5-26 (166)
349 2px0_A Flagellar biosynthesis 88.2 0.36 1.2E-05 47.0 4.2 36 64-99 104-139 (296)
350 1vht_A Dephospho-COA kinase; s 88.2 0.27 9.3E-06 44.5 3.1 22 66-87 5-26 (218)
351 1g6h_A High-affinity branched- 88.1 0.28 9.6E-06 46.6 3.3 49 172-220 163-212 (257)
352 1z2a_A RAS-related protein RAB 88.1 0.3 1E-05 41.1 3.2 22 67-88 7-28 (168)
353 4ddu_A Reverse gyrase; topoiso 88.1 2.4 8.1E-05 48.7 11.5 47 65-112 93-143 (1104)
354 3r20_A Cytidylate kinase; stru 87.9 0.33 1.1E-05 46.0 3.6 26 65-90 9-34 (233)
355 3qf7_A RAD50; ABC-ATPase, ATPa 87.9 0.28 9.7E-06 49.0 3.3 22 68-89 26-47 (365)
356 2f9l_A RAB11B, member RAS onco 87.9 0.3 1E-05 43.3 3.2 21 68-88 8-28 (199)
357 1b0u_A Histidine permease; ABC 87.8 0.3 1E-05 46.7 3.3 49 172-220 163-212 (262)
358 1q3t_A Cytidylate kinase; nucl 87.8 0.38 1.3E-05 44.4 3.9 26 65-90 16-41 (236)
359 4f92_B U5 small nuclear ribonu 87.8 2.9 9.8E-05 50.3 12.3 62 14-99 915-977 (1724)
360 2dyk_A GTP-binding protein; GT 87.8 0.32 1.1E-05 40.7 3.2 22 67-88 3-24 (161)
361 3sop_A Neuronal-specific septi 87.8 0.29 9.9E-06 47.0 3.2 23 68-90 5-27 (270)
362 1ltq_A Polynucleotide kinase; 87.8 0.28 9.7E-06 46.6 3.1 23 66-88 3-25 (301)
363 1s2m_A Putative ATP-dependent 87.7 1.1 3.8E-05 43.7 7.5 46 15-85 33-78 (400)
364 1ek0_A Protein (GTP-binding pr 87.7 0.33 1.1E-05 40.8 3.2 22 67-88 5-26 (170)
365 1u8z_A RAS-related protein RAL 87.6 0.33 1.1E-05 40.6 3.2 22 67-88 6-27 (168)
366 2ff7_A Alpha-hemolysin translo 87.6 0.31 1.1E-05 46.1 3.3 48 172-220 155-203 (247)
367 2yz2_A Putative ABC transporte 87.6 0.31 1.1E-05 46.5 3.3 49 172-220 148-197 (266)
368 2nzj_A GTP-binding protein REM 87.6 0.3 1E-05 41.5 2.9 21 67-87 6-26 (175)
369 3crm_A TRNA delta(2)-isopenten 87.6 0.29 1E-05 48.7 3.2 26 65-90 5-30 (323)
370 1g6h_A High-affinity branched- 87.5 1.2 4.2E-05 42.1 7.4 35 65-100 33-67 (257)
371 3q72_A GTP-binding protein RAD 87.5 0.29 9.9E-06 41.3 2.7 19 68-86 5-23 (166)
372 1t6n_A Probable ATP-dependent 87.5 1.2 4.1E-05 40.0 7.1 47 14-85 25-71 (220)
373 2f6r_A COA synthase, bifunctio 87.4 0.3 1E-05 46.9 3.0 22 65-86 75-96 (281)
374 1wms_A RAB-9, RAB9, RAS-relate 87.4 0.34 1.2E-05 41.3 3.2 22 67-88 9-30 (177)
375 1gm5_A RECG; helicase, replica 87.4 0.87 3E-05 50.4 7.1 55 13-86 356-410 (780)
376 1oix_A RAS-related protein RAB 87.3 0.32 1.1E-05 43.1 3.0 23 67-89 31-53 (191)
377 2erx_A GTP-binding protein DI- 87.3 0.33 1.1E-05 40.9 2.9 21 67-87 5-25 (172)
378 1z0j_A RAB-22, RAS-related pro 87.2 0.36 1.2E-05 40.7 3.2 22 67-88 8-29 (170)
379 4eaq_A DTMP kinase, thymidylat 87.2 0.36 1.2E-05 45.0 3.4 27 65-91 26-52 (229)
380 2zu0_C Probable ATP-dependent 87.1 0.31 1.1E-05 46.6 3.0 49 172-220 174-223 (267)
381 1c1y_A RAS-related protein RAP 87.1 0.37 1.3E-05 40.5 3.2 22 67-88 5-26 (167)
382 1g16_A RAS-related protein SEC 87.1 0.35 1.2E-05 40.7 3.0 21 67-87 5-25 (170)
383 2wji_A Ferrous iron transport 87.1 0.33 1.1E-05 41.7 2.9 20 68-87 6-25 (165)
384 2wjg_A FEOB, ferrous iron tran 87.1 0.33 1.1E-05 42.0 2.9 22 66-87 8-29 (188)
385 1r2q_A RAS-related protein RAB 87.1 0.37 1.3E-05 40.5 3.2 21 67-87 8-28 (170)
386 3bc1_A RAS-related protein RAB 87.0 0.37 1.2E-05 41.5 3.2 22 67-88 13-34 (195)
387 2ghi_A Transport protein; mult 87.0 0.36 1.2E-05 46.0 3.4 23 63-85 44-66 (260)
388 1e69_A Chromosome segregation 87.0 0.27 9.2E-06 48.0 2.5 19 68-86 27-45 (322)
389 2h92_A Cytidylate kinase; ross 86.9 0.42 1.4E-05 43.1 3.6 25 66-90 4-28 (219)
390 2zej_A Dardarin, leucine-rich 86.9 0.33 1.1E-05 42.4 2.9 20 68-87 5-24 (184)
391 3fe2_A Probable ATP-dependent 86.9 1.4 4.7E-05 40.5 7.2 43 15-82 41-83 (242)
392 1sq5_A Pantothenate kinase; P- 86.8 0.35 1.2E-05 47.0 3.3 25 66-90 81-105 (308)
393 1nrj_B SR-beta, signal recogni 86.8 0.37 1.3E-05 43.1 3.2 25 65-89 12-36 (218)
394 1z08_A RAS-related protein RAB 86.8 0.39 1.3E-05 40.6 3.1 22 67-88 8-29 (170)
395 3aez_A Pantothenate kinase; tr 86.8 0.43 1.5E-05 46.9 3.8 26 65-90 90-115 (312)
396 2ixe_A Antigen peptide transpo 86.7 0.44 1.5E-05 45.7 3.8 37 63-100 43-79 (271)
397 1rj9_A FTSY, signal recognitio 86.7 0.55 1.9E-05 45.9 4.6 34 65-99 102-135 (304)
398 2ihy_A ABC transporter, ATP-bi 86.6 0.38 1.3E-05 46.5 3.3 32 68-100 50-81 (279)
399 1ky3_A GTP-binding protein YPT 86.6 0.4 1.4E-05 40.9 3.2 23 66-88 9-31 (182)
400 3ber_A Probable ATP-dependent 86.6 1.3 4.6E-05 41.1 7.0 73 16-113 56-134 (249)
401 1r8s_A ADP-ribosylation factor 86.5 0.43 1.5E-05 40.1 3.3 21 68-88 3-23 (164)
402 3h1t_A Type I site-specific re 86.5 1.1 3.9E-05 46.8 7.2 48 22-89 175-222 (590)
403 4dsu_A GTPase KRAS, isoform 2B 86.3 0.42 1.4E-05 41.1 3.2 22 67-88 6-27 (189)
404 1z0f_A RAB14, member RAS oncog 86.3 0.43 1.5E-05 40.6 3.2 23 66-88 16-38 (179)
405 2yz2_A Putative ABC transporte 86.3 1.7 5.7E-05 41.4 7.6 35 65-100 33-67 (266)
406 3tqf_A HPR(Ser) kinase; transf 86.3 0.39 1.3E-05 44.1 3.0 23 65-87 16-38 (181)
407 1b0u_A Histidine permease; ABC 86.3 1.4 4.7E-05 42.0 7.0 35 65-100 32-66 (262)
408 3clv_A RAB5 protein, putative; 86.3 0.42 1.4E-05 41.3 3.2 22 67-88 9-30 (208)
409 2gza_A Type IV secretion syste 86.2 0.41 1.4E-05 47.8 3.4 35 64-99 174-208 (361)
410 2fn4_A P23, RAS-related protei 86.2 0.41 1.4E-05 40.8 3.0 23 66-88 10-32 (181)
411 3q85_A GTP-binding protein REM 86.2 0.4 1.4E-05 40.6 2.9 19 68-86 5-23 (169)
412 1upt_A ARL1, ADP-ribosylation 86.2 0.44 1.5E-05 40.3 3.2 22 66-87 8-29 (171)
413 3pqc_A Probable GTP-binding pr 86.1 0.38 1.3E-05 41.6 2.8 23 66-88 24-46 (195)
414 3tw8_B RAS-related protein RAB 86.1 0.4 1.4E-05 40.9 2.8 21 67-87 11-31 (181)
415 2y8e_A RAB-protein 6, GH09086P 86.1 0.43 1.5E-05 40.6 3.0 21 67-87 16-36 (179)
416 1svi_A GTP-binding protein YSX 86.0 0.39 1.3E-05 41.9 2.8 24 65-88 23-46 (195)
417 2hxs_A RAB-26, RAS-related pro 86.0 0.45 1.6E-05 40.6 3.2 21 67-87 8-28 (178)
418 2ocp_A DGK, deoxyguanosine kin 86.0 0.4 1.4E-05 44.3 3.0 25 66-90 3-27 (241)
419 3auy_A DNA double-strand break 86.0 0.4 1.4E-05 47.8 3.2 43 341-386 302-345 (371)
420 3kkq_A RAS-related protein M-R 85.8 0.46 1.6E-05 40.9 3.2 22 67-88 20-41 (183)
421 3ly5_A ATP-dependent RNA helic 85.8 1.2 4.2E-05 41.7 6.4 47 179-226 200-247 (262)
422 2bme_A RAB4A, RAS-related prot 85.8 0.44 1.5E-05 41.1 3.0 22 67-88 12-33 (186)
423 1ji0_A ABC transporter; ATP bi 85.8 1.4 4.9E-05 41.2 6.8 35 65-100 32-66 (240)
424 1rif_A DAR protein, DNA helica 85.7 1.5 5.1E-05 41.3 6.9 43 177-223 222-264 (282)
425 2oca_A DAR protein, ATP-depend 85.6 0.69 2.4E-05 47.3 4.9 64 23-111 111-178 (510)
426 2a9k_A RAS-related protein RAL 85.6 0.49 1.7E-05 40.5 3.2 23 66-88 19-41 (187)
427 3eiq_A Eukaryotic initiation f 85.6 1.2 4.1E-05 43.5 6.4 75 14-113 51-131 (414)
428 2lkc_A Translation initiation 85.5 0.56 1.9E-05 40.0 3.5 23 65-87 8-30 (178)
429 3dm5_A SRP54, signal recogniti 85.5 5.2 0.00018 41.4 11.4 35 64-99 99-133 (443)
430 2g6b_A RAS-related protein RAB 85.5 0.49 1.7E-05 40.4 3.2 22 67-88 12-33 (180)
431 1pui_A ENGB, probable GTP-bind 85.5 0.26 8.8E-06 43.8 1.4 21 67-87 28-48 (210)
432 2oil_A CATX-8, RAS-related pro 85.5 0.48 1.6E-05 41.4 3.2 22 67-88 27-48 (193)
433 1mh1_A RAC1; GTP-binding, GTPa 85.4 0.5 1.7E-05 40.5 3.2 22 67-88 7-28 (186)
434 2gj8_A MNME, tRNA modification 85.4 0.43 1.5E-05 41.5 2.7 22 67-88 6-27 (172)
435 2bbs_A Cystic fibrosis transme 85.4 0.48 1.6E-05 46.1 3.3 48 172-220 169-218 (290)
436 1np6_A Molybdopterin-guanine d 85.3 0.52 1.8E-05 42.4 3.3 26 65-90 6-31 (174)
437 1m7b_A RND3/RHOE small GTP-bin 85.3 0.48 1.6E-05 41.2 3.0 23 66-88 8-30 (184)
438 2ga8_A Hypothetical 39.9 kDa p 85.2 0.48 1.6E-05 47.9 3.4 25 66-90 25-49 (359)
439 2efe_B Small GTP-binding prote 85.2 0.51 1.8E-05 40.3 3.1 22 67-88 14-35 (181)
440 1qhl_A Protein (cell division 85.1 0.15 5.2E-06 48.1 -0.4 32 68-100 30-61 (227)
441 2bov_A RAla, RAS-related prote 85.1 0.52 1.8E-05 41.3 3.2 23 66-88 15-37 (206)
442 3zvl_A Bifunctional polynucleo 85.0 0.55 1.9E-05 47.7 3.7 26 64-89 257-282 (416)
443 3b9q_A Chloroplast SRP recepto 85.0 0.66 2.3E-05 45.3 4.2 35 64-99 99-133 (302)
444 3con_A GTPase NRAS; structural 84.9 0.54 1.8E-05 40.8 3.2 22 67-88 23-44 (190)
445 3bwd_D RAC-like GTP-binding pr 84.8 0.55 1.9E-05 40.2 3.2 23 66-88 9-31 (182)
446 3e70_C DPA, signal recognition 84.7 0.67 2.3E-05 45.9 4.1 36 64-100 128-163 (328)
447 2gf9_A RAS-related protein RAB 84.7 0.56 1.9E-05 40.9 3.2 22 67-88 24-45 (189)
448 2zpa_A Uncharacterized protein 84.6 1 3.5E-05 49.1 5.8 184 178-374 253-484 (671)
449 1vg8_A RAS-related protein RAB 84.5 0.56 1.9E-05 41.2 3.2 23 66-88 9-31 (207)
450 2cxx_A Probable GTP-binding pr 84.5 0.49 1.7E-05 40.8 2.7 21 68-88 4-24 (190)
451 3oiy_A Reverse gyrase helicase 84.5 1.8 6.3E-05 42.7 7.3 65 22-112 18-86 (414)
452 1moz_A ARL1, ADP-ribosylation 84.3 0.42 1.4E-05 41.1 2.2 22 65-86 18-39 (183)
453 1uaa_A REP helicase, protein ( 84.3 1.3 4.6E-05 47.3 6.5 40 176-219 203-242 (673)
454 1xjc_A MOBB protein homolog; s 84.3 0.68 2.3E-05 41.7 3.6 26 65-90 4-29 (169)
455 3foz_A TRNA delta(2)-isopenten 84.3 0.61 2.1E-05 46.4 3.5 27 64-90 9-35 (316)
456 1zd9_A ADP-ribosylation factor 84.2 0.6 2E-05 40.8 3.2 22 67-88 24-45 (188)
457 1z06_A RAS-related protein RAB 84.2 0.6 2.1E-05 40.7 3.2 21 67-87 22-42 (189)
458 2wsm_A Hydrogenase expression/ 84.1 0.6 2E-05 41.9 3.2 25 66-90 31-55 (221)
459 3tkl_A RAS-related protein RAB 84.1 0.61 2.1E-05 40.5 3.2 22 67-88 18-39 (196)
460 1fzq_A ADP-ribosylation factor 84.1 0.53 1.8E-05 41.1 2.7 24 65-88 16-39 (181)
461 2fg5_A RAB-22B, RAS-related pr 84.0 0.58 2E-05 41.1 3.0 22 67-88 25-46 (192)
462 1zbd_A Rabphilin-3A; G protein 83.9 0.57 2E-05 41.2 2.9 22 67-88 10-31 (203)
463 4etp_A Kinesin-like protein KA 83.9 0.88 3E-05 46.5 4.7 43 24-82 116-158 (403)
464 2a5j_A RAS-related protein RAB 83.9 0.63 2.1E-05 40.7 3.2 21 67-87 23-43 (191)
465 2i4i_A ATP-dependent RNA helic 83.8 1.8 6E-05 42.4 6.7 44 14-82 26-69 (417)
466 3tqc_A Pantothenate kinase; bi 83.8 0.71 2.4E-05 45.7 3.8 27 64-90 91-117 (321)
467 1x3s_A RAS-related protein RAB 83.8 0.65 2.2E-05 40.2 3.2 23 66-88 16-38 (195)
468 3cph_A RAS-related protein SEC 83.7 0.64 2.2E-05 41.1 3.2 22 66-87 21-42 (213)
469 2bcg_Y Protein YP2, GTP-bindin 83.7 0.61 2.1E-05 41.2 3.0 22 67-88 10-31 (206)
470 3dz8_A RAS-related protein RAB 83.6 0.65 2.2E-05 40.6 3.2 23 67-89 25-47 (191)
471 2j0s_A ATP-dependent RNA helic 83.6 1.8 6.2E-05 42.4 6.7 47 14-85 48-94 (410)
472 3lv8_A DTMP kinase, thymidylat 83.6 0.72 2.5E-05 43.6 3.6 35 57-91 19-53 (236)
473 2h58_A Kinesin-like protein KI 83.5 0.59 2E-05 46.6 3.1 43 25-83 57-99 (330)
474 3c5c_A RAS-like protein 12; GD 83.5 0.66 2.3E-05 40.7 3.2 22 67-88 23-44 (187)
475 1f2t_B RAD50 ABC-ATPase; DNA d 83.5 1.9 6.4E-05 37.7 6.1 47 174-220 75-122 (148)
476 3t5g_A GTP-binding protein RHE 83.5 0.65 2.2E-05 39.9 3.0 21 67-87 8-28 (181)
477 2iwr_A Centaurin gamma 1; ANK 83.5 0.51 1.8E-05 40.4 2.3 22 67-88 9-30 (178)
478 3fmp_B ATP-dependent RNA helic 83.4 1.6 5.6E-05 44.2 6.5 47 13-82 102-148 (479)
479 1ksh_A ARF-like protein 2; sma 83.4 0.62 2.1E-05 40.3 2.9 23 65-87 18-40 (186)
480 2ff7_A Alpha-hemolysin translo 83.3 2.2 7.6E-05 40.1 6.9 36 64-100 34-69 (247)
481 2o5v_A DNA replication and rep 83.3 0.59 2E-05 47.0 3.0 24 67-90 28-51 (359)
482 2zu0_C Probable ATP-dependent 83.3 1.2 4.1E-05 42.5 5.1 37 64-100 45-82 (267)
483 1pjr_A PCRA; DNA repair, DNA r 83.3 1.8 6.2E-05 47.0 7.1 38 178-219 214-251 (724)
484 4i1u_A Dephospho-COA kinase; s 83.3 0.65 2.2E-05 43.3 3.1 22 66-87 10-31 (210)
485 3reg_A RHO-like small GTPase; 83.2 0.7 2.4E-05 40.4 3.2 22 67-88 25-46 (194)
486 2f1r_A Molybdopterin-guanine d 83.1 0.38 1.3E-05 43.2 1.4 25 66-90 3-27 (171)
487 2gf0_A GTP-binding protein DI- 83.1 0.67 2.3E-05 40.3 3.0 22 66-87 9-30 (199)
488 2qm8_A GTPase/ATPase; G protei 83.1 0.71 2.4E-05 45.7 3.5 25 66-90 56-80 (337)
489 4bas_A ADP-ribosylation factor 83.1 0.63 2.2E-05 40.5 2.8 22 66-87 18-39 (199)
490 3ihw_A Centg3; RAS, centaurin, 83.0 0.71 2.4E-05 40.5 3.1 22 67-88 22-43 (184)
491 1f9v_A Kinesin-like protein KA 83.0 0.72 2.4E-05 46.3 3.5 42 25-82 61-102 (347)
492 2atv_A RERG, RAS-like estrogen 82.9 0.72 2.5E-05 40.5 3.2 24 65-88 28-51 (196)
493 2il1_A RAB12; G-protein, GDP, 82.9 0.66 2.2E-05 40.8 2.9 21 67-87 28-48 (192)
494 2www_A Methylmalonic aciduria 82.9 0.7 2.4E-05 45.9 3.3 23 67-89 76-98 (349)
495 2cjw_A GTP-binding protein GEM 82.8 0.66 2.2E-05 41.1 2.9 21 67-87 8-28 (192)
496 1a7j_A Phosphoribulokinase; tr 82.8 0.42 1.5E-05 46.3 1.7 24 67-90 7-30 (290)
497 1xti_A Probable ATP-dependent 82.8 1.8 6.1E-05 41.9 6.2 74 15-113 20-99 (391)
498 1m2o_B GTP-binding protein SAR 82.8 0.7 2.4E-05 40.7 3.0 21 67-87 25-45 (190)
499 1lw7_A Transcriptional regulat 82.7 0.59 2E-05 46.3 2.8 26 65-90 170-195 (365)
500 2p5s_A RAS and EF-hand domain 82.7 0.74 2.5E-05 40.6 3.2 23 65-87 28-50 (199)
No 1
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.71 E-value=4.5e-17 Score=149.19 Aligned_cols=159 Identities=14% Similarity=0.202 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceee---echhhh
Q psy318 27 DKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV---HFNKFM 103 (438)
Q Consensus 27 D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~---Hf~~fm 103 (438)
++.|..++..+..+... +. ....++++||||++|+|||+|+.++++.+... ..++ +...++
T Consensus 31 ~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~~~~ 94 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAE---YE------------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYVPELF 94 (202)
T ss_dssp SHHHHHHHHHHHHHHHH---CC------------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEHHHHH
T ss_pred ChhHHHHHHHHHHHHHH---hh------------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEhHHHH
Confidence 55777777776665442 10 01124899999999999999999999988533 2333 334333
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCe
Q psy318 104 LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWL 183 (438)
Q Consensus 104 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~l 183 (438)
..+...+ . .+.+..+. ..+.++++
T Consensus 95 ~~~~~~~---~----------------------------------------------------~~~~~~~~-~~~~~~~~ 118 (202)
T 2w58_A 95 RELKHSL---Q----------------------------------------------------DQTMNEKL-DYIKKVPV 118 (202)
T ss_dssp HHHHHC----------------------------------------------------------CCCHHHH-HHHHHSSE
T ss_pred HHHHHHh---c----------------------------------------------------cchHHHHH-HHhcCCCE
Confidence 3322110 0 00112222 23456789
Q ss_pred EEEecCCCCCh---hhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCC-------CCcCCcccHHHHHHhhcccccccc
Q psy318 184 ICFDEFQVTDI---ADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNG-------LQRSNFLPFIDVLKTYCDVASLNS 253 (438)
Q Consensus 184 Lc~DEf~v~d~---~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~g-------l~r~~F~p~I~~L~~~~~vv~ld~ 253 (438)
|||||++.... ..+.++..+++..+..+..+|+|||.+|.+|...- .+.....++++||.++|.++.++
T Consensus 119 lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~~~~~~~~~~~~~~~~~~~~Rl~~~~~~~~~~- 197 (202)
T 2w58_A 119 LMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQRGEEEKVKAARIMERIRYLAYPIEIT- 197 (202)
T ss_dssp EEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHHSCCCC-----CCHHHHHHHHHHHHEEEEECC-
T ss_pred EEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHhhhccCcchhHHHHHHHHHHHHhceEEeec-
Confidence 99999987532 22335667888888888899999999999998731 23445788999999999999999
Q ss_pred ccchh
Q psy318 254 NIDYR 258 (438)
Q Consensus 254 g~DyR 258 (438)
|.|||
T Consensus 198 g~~~R 202 (202)
T 2w58_A 198 GPNRR 202 (202)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 89998
No 2
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.70 E-value=2.7e-17 Score=163.06 Aligned_cols=141 Identities=19% Similarity=0.268 Sum_probs=94.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhccccee---eechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQR---VHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEE 141 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R---~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (438)
+++||||||+|+|||||+.++++.+...++.+ +++.+|+.++...+. .
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~-----~------------------------ 202 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAIS-----N------------------------ 202 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC------------------------------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhc-----c------------------------
Confidence 58999999999999999999999886122333 455555444321100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChh---hHHHHHHHHHHHHHCCCEEEEec
Q psy318 142 KEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA---DAMILKRLFTELFQLGVVVVATS 218 (438)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~---da~iL~~Lfn~l~~~g~~lV~TS 218 (438)
+ ..... . ..+.++++|||||++..... .+.+|+.+++.++..++++|+||
T Consensus 203 -------------------~---~~~~~----~-~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitS 255 (308)
T 2qgz_A 203 -------------------G---SVKEE----I-DAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTS 255 (308)
T ss_dssp -------------------------CCT----T-HHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEE
T ss_pred -------------------c---hHHHH----H-HHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEEC
Confidence 0 00011 1 22457899999999875432 22356679999887778999999
Q ss_pred CCChhhhhcC------CCCcCCcccHHHHHHhhccccccccccchhcccc
Q psy318 219 NRAPDDLYKN------GLQRSNFLPFIDVLKTYCDVASLNSNIDYRSLKA 262 (438)
Q Consensus 219 N~~P~~L~~~------gl~r~~F~p~I~~L~~~~~vv~ld~g~DyR~~~~ 262 (438)
|.+|.+|... |.+.....++++||.++|.++.++ |.+||+.+-
T Consensus 256 N~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~~~~~~i~l~-g~s~R~~~~ 304 (308)
T 2qgz_A 256 NYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFHLE-GANRRLEHH 304 (308)
T ss_dssp SSCHHHHHTTCC--------CCCCSHHHHHHHHEEEEECC-SCCCC----
T ss_pred CCCHHHHHHHHhhccCccchhhhHHHHHHHHHhCEEEEec-CCccccccc
Confidence 9999999874 234456778999999999999999 899998764
No 3
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.66 E-value=2.7e-16 Score=141.95 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH
Q psy318 27 DKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV 106 (438)
Q Consensus 27 D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v 106 (438)
++.|.+++..+..+.+.+. ...+++++|+||+|+|||+|+.+++..+......++.|.... ++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~----------------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~-~~ 78 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFN----------------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK-DL 78 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCC----------------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH-HH
T ss_pred CHHHHHHHHHHHHHHHhcc----------------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH-HH
Confidence 7889999998888765431 233689999999999999999999998853333344443321 11
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEE
Q psy318 107 HAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICF 186 (438)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~ 186 (438)
.+.+....... .. .. ..+.+.++++|+|
T Consensus 79 ~~~~~~~~~~~------------------------------------------------~~---~~-~~~~~~~~~llil 106 (180)
T 3ec2_A 79 IFRLKHLMDEG------------------------------------------------KD---TK-FLKTVLNSPVLVL 106 (180)
T ss_dssp HHHHHHHHHHT------------------------------------------------CC---SH-HHHHHHTCSEEEE
T ss_pred HHHHHHHhcCc------------------------------------------------hH---HH-HHHHhcCCCEEEE
Confidence 11111111100 00 11 2333568999999
Q ss_pred ecCCC--CChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCC------CCcCCcccHHHHHHhhcccccc
Q psy318 187 DEFQV--TDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNG------LQRSNFLPFIDVLKTYCDVASL 251 (438)
Q Consensus 187 DEf~v--~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~g------l~r~~F~p~I~~L~~~~~vv~l 251 (438)
||++. .+......|+.+++.+.+.|+.+|+|||.+|++|++++ +....-.+++++|..+|++|.+
T Consensus 107 DE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~~~~~~~~~~~l~~~~~~~i~~rl~~~~~~i~~ 179 (180)
T 3ec2_A 107 DDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQREEESSVRISADLASRLGENVVSKIYEMNELLVI 179 (180)
T ss_dssp ETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC---CHHHHHHHHHHHHCHHHHHHHHHHEEEECC
T ss_pred eCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHhhhhccchhhHHHHHHHHHHHHHHHhcCeeeee
Confidence 99994 56666678999999999999999999999999976522 2211225678999999999876
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.9e-11 Score=124.63 Aligned_cols=141 Identities=23% Similarity=0.336 Sum_probs=94.9
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM 136 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (438)
..++|+|++||||||||||+|+.++++.+..+ -.++...+++ .+--+.+++
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-f~~v~~s~l~sk~vGese~~vr~------------------------ 232 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-FIRVSGAELVQKYIGEGSRMVRE------------------------ 232 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-EEEEEGGGGSCSSTTHHHHHHHH------------------------
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-ceEEEhHHhhccccchHHHHHHH------------------------
Confidence 45678999999999999999999999988532 2233333322 111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCC--------hhh---HHHHHHHHH
Q psy318 137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTD--------IAD---AMILKRLFT 205 (438)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d--------~~d---a~iL~~Lfn 205 (438)
+...|++ ..+++|+|||++.+. .++ ...+..|++
T Consensus 233 ---------------------------------lF~~Ar~--~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 277 (405)
T 4b4t_J 233 ---------------------------------LFVMARE--HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN 277 (405)
T ss_dssp ---------------------------------HHHHHHH--TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHH--hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence 1122333 468999999999752 111 234666666
Q ss_pred HHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318 206 ELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 206 ~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
.+- ..++.||+|+|+| |+-+.++++++..+.| ..++|+.++.-+.+..+.|+....
T Consensus 278 ~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA 347 (405)
T 4b4t_J 278 QLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVA 347 (405)
T ss_dssp HHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHH
T ss_pred hhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHH
Confidence 664 2345788999995 6667778999887765 467888888888888788887654
No 5
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.27 E-value=8e-12 Score=111.19 Aligned_cols=96 Identities=15% Similarity=0.242 Sum_probs=73.0
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE 143 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
..+.++|+|++|+|||+|+.++...+... +.++.|-... ++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~-~~------------------------------------- 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAA-SM------------------------------------- 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETT-TS-------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHH-Hh-------------------------------------
Confidence 45789999999999999999999887532 3333332110 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCE-EEEecCCCh
Q psy318 144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVV-VVATSNRAP 222 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~-lV~TSN~~P 222 (438)
.+. .++.++++|||||++..+...+..|+.+++.+.+.|.. +|+|||.+|
T Consensus 76 -----------------------~~~------~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 76 -----------------------PLT------DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp -----------------------CCC------GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred -----------------------hHH------HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 000 23457899999999998876688899999999999886 999999999
Q ss_pred hhhhc
Q psy318 223 DDLYK 227 (438)
Q Consensus 223 ~~L~~ 227 (438)
.+|..
T Consensus 127 ~~l~~ 131 (149)
T 2kjq_A 127 QQLVI 131 (149)
T ss_dssp TTSSC
T ss_pred HHccc
Confidence 99863
No 6
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.24 E-value=6.8e-11 Score=116.14 Aligned_cols=106 Identities=24% Similarity=0.358 Sum_probs=73.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceee---echhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV---HFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~---Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
.+++++||||+|+|||+|+.++++.+... ..++ ....|+.++...+ ...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~~~~~~~~~~---~~~------------------------ 87 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDFAQAMVEHL---KKG------------------------ 87 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHHHH---HHT------------------------
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHHHHHHH---HcC------------------------
Confidence 46789999999999999999999988532 2233 3333332222111 100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEec
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVATS 218 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~TS 218 (438)
.+. .....+.+.++|+|||++.... ..+..++.+++.+.+.|.++|+||
T Consensus 88 ----------------------------~~~-~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~ 138 (324)
T 1l8q_A 88 ----------------------------TIN-EFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILAS 138 (324)
T ss_dssp ----------------------------CHH-HHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----------------------------cHH-HHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 000 1222345689999999999764 556778999999999999999999
Q ss_pred CCChhhhh
Q psy318 219 NRAPDDLY 226 (438)
Q Consensus 219 N~~P~~L~ 226 (438)
|.+|.++.
T Consensus 139 ~~~~~~l~ 146 (324)
T 1l8q_A 139 DRHPQKLD 146 (324)
T ss_dssp SSCGGGCT
T ss_pred cCChHHHH
Confidence 99998775
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1e-10 Score=121.79 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=90.0
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM 136 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (438)
..++|+|++||||||||||+|+.++++.+..+ -..+...+++ .+..+.++.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-~~~v~~s~l~sk~~Gese~~ir~------------------------ 265 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-FIFSPASGIVDKYIGESARIIRE------------------------ 265 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-EEEEEGGGTCCSSSSHHHHHHHH------------------------
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEehhhhccccchHHHHHHHH------------------------
Confidence 45778999999999999999999999988532 2223322221 111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------h---hHHHHHHHHH
Q psy318 137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------A---DAMILKRLFT 205 (438)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~---da~iL~~Lfn 205 (438)
+...|+. ..+++|+|||++.+-. . -...+..|++
T Consensus 266 ---------------------------------~F~~A~~--~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 310 (437)
T 4b4t_L 266 ---------------------------------MFAYAKE--HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310 (437)
T ss_dssp ---------------------------------HHHHHHH--SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHh--cCCceeeeecccccccccccCCCCcchHHHHHHHHHHH
Confidence 1112332 4689999999997421 1 1234566677
Q ss_pred HHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318 206 ELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 206 ~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
.+- ..++.||+|+|+| |+-+.+++|++..+.| ..++|+.++.-+.+.+..|+....
T Consensus 311 ~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA 380 (437)
T 4b4t_L 311 QMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAV 380 (437)
T ss_dssp HHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHH
T ss_pred HhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence 664 2346899999995 4445556676665554 457888888888888788887654
No 8
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=7.9e-11 Score=122.25 Aligned_cols=141 Identities=21% Similarity=0.286 Sum_probs=90.4
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM 136 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (438)
..+.|+|++||||||||||+|+.++++.+..+ -.++...+++ .+..+.++.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-fi~v~~s~l~sk~vGesek~ir~------------------------ 266 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-FLRIVGSELIQKYLGDGPRLCRQ------------------------ 266 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-EEEEESGGGCCSSSSHHHHHHHH------------------------
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCC-EEEEEHHHhhhccCchHHHHHHH------------------------
Confidence 45778999999999999999999999987532 1223222221 111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh-----------hhHHHHHHHHH
Q psy318 137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI-----------ADAMILKRLFT 205 (438)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~-----------~da~iL~~Lfn 205 (438)
+...|++ ..+++|+|||++.+-. .....+..|++
T Consensus 267 ---------------------------------lF~~Ar~--~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~ 311 (437)
T 4b4t_I 267 ---------------------------------IFKVAGE--NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311 (437)
T ss_dssp ---------------------------------HHHHHHH--TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHh--cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence 1122333 4578999999997421 11234566666
Q ss_pred HHHH----CCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318 206 ELFQ----LGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 206 ~l~~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
.+-. .++.||+|+|+| |+-+.++++++..+.+ ..++|+.++.-+.++.+.|+....
T Consensus 312 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA 381 (437)
T 4b4t_I 312 QLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLV 381 (437)
T ss_dssp HHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHH
T ss_pred HhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence 6642 346788999995 5555566777666554 467888888888888778887654
No 9
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.17 E-value=9.9e-11 Score=121.72 Aligned_cols=141 Identities=22% Similarity=0.337 Sum_probs=90.2
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM 136 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (438)
..+.|+|++||||||||||+|+.++++.+..+ -..+...+++ .+-.+.++.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-f~~v~~s~l~~~~vGese~~ir~------------------------ 265 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNAT-FLKLAAPQLVQMYIGEGAKLVRD------------------------ 265 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-EEEEEGGGGCSSCSSHHHHHHHH------------------------
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-EEEEehhhhhhcccchHHHHHHH------------------------
Confidence 45679999999999999999999999987432 1222222221 111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC-----Ch---hh---HHHHHHHHH
Q psy318 137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT-----DI---AD---AMILKRLFT 205 (438)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~-----d~---~d---a~iL~~Lfn 205 (438)
+...|+. ..+++|+|||++.+ +. ++ ...+..|++
T Consensus 266 ---------------------------------lF~~A~~--~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 266 ---------------------------------AFALAKE--KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp ---------------------------------HHHHHHH--HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHh--cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 1122333 46899999999963 11 11 234555666
Q ss_pred HHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318 206 ELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 206 ~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
.+- ..++.||+|+|+| |+-+.++++++..+.| ..++|+.++.-+.++.+.|+....
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA 380 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELA 380 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHH
T ss_pred HhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence 663 2346788999995 5555567777766655 467888888888888788887654
No 10
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.7e-10 Score=120.71 Aligned_cols=141 Identities=21% Similarity=0.315 Sum_probs=92.3
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM 136 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (438)
..++|+|++||||||||||+|+.++++.+..+ -.++...+++ .+-.+.++.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-fi~vs~s~L~sk~vGesek~ir~------------------------ 293 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDAT-FIRVIGSELVQKYVGEGARMVRE------------------------ 293 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-EEEEEGGGGCCCSSSHHHHHHHH------------------------
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-eEEEEhHHhhcccCCHHHHHHHH------------------------
Confidence 35789999999999999999999999988532 1223322222 111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCCh--------hh---HHHHHHHHH
Q psy318 137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDI--------AD---AMILKRLFT 205 (438)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~--------~d---a~iL~~Lfn 205 (438)
+...|+. ..+++|+|||++..-. .. ...+..+++
T Consensus 294 ---------------------------------lF~~Ar~--~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 338 (467)
T 4b4t_H 294 ---------------------------------LFEMART--KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT 338 (467)
T ss_dssp ---------------------------------HHHHHHH--TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHh--cCCceEeecccccccccccCcCCCccHHHHHHHHHHHH
Confidence 1112333 4688999999997521 11 224555666
Q ss_pred HHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHHhhccccccccccchhccc
Q psy318 206 ELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 206 ~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
.+- ..++.||+|+|+| |+-+.+++|++..+.+ ..++|+.++.-+.++.+.|+....
T Consensus 339 ~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA 408 (467)
T 4b4t_H 339 QLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELIS 408 (467)
T ss_dssp HHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH
T ss_pred HhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence 664 2345788999995 5666678898887765 467888888888888788887654
No 11
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.16 E-value=1e-10 Score=121.13 Aligned_cols=106 Identities=27% Similarity=0.341 Sum_probs=73.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcc-cceeeec---hhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETK-QKQRVHF---NKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~-~k~R~Hf---~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
+++++||||+|+||||||.++++.+... ...++.| ..|+.++.. .....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~---~~~~~------------------------ 182 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD---SMKEG------------------------ 182 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHH---HHHTT------------------------
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH---HHHcc------------------------
Confidence 6789999999999999999999988422 1223333 333322221 11100
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhh-cCCeEEEecCCCCCh--hhHHHHHHHHHHHHHCCCEEEEe
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIIS-KTWLICFDEFQVTDI--ADAMILKRLFTELFQLGVVVVAT 217 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~-~~~lLc~DEf~v~d~--~da~iL~~Lfn~l~~~g~~lV~T 217 (438)
.+.. ....+. +.++|+|||++.... ..+..|+.+|+.+.+.|..+|+|
T Consensus 183 ----------------------------~~~~-~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIit 233 (440)
T 2z4s_A 183 ----------------------------KLNE-FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVIC 233 (440)
T ss_dssp ----------------------------CHHH-HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred ----------------------------cHHH-HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEE
Confidence 0111 223334 789999999998654 45667999999999999999999
Q ss_pred cCCChhhhh
Q psy318 218 SNRAPDDLY 226 (438)
Q Consensus 218 SN~~P~~L~ 226 (438)
||.+|.++.
T Consensus 234 t~~~~~~l~ 242 (440)
T 2z4s_A 234 SDREPQKLS 242 (440)
T ss_dssp ESSCGGGCS
T ss_pred ECCCHHHHH
Confidence 999998874
No 12
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.7e-10 Score=119.75 Aligned_cols=141 Identities=28% Similarity=0.354 Sum_probs=92.1
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh----HHHHHHHHHHHHHhhhcccCCCCCCCCCccccc
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM----LDVHAKIHEVKKILARDKAKSYDPGVPNRLDVM 136 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm----~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (438)
..+.|+|++||||||||||+|+.++++.+..+ -.++...+++ .+.-+.++.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-~~~v~~~~l~~~~~Ge~e~~ir~------------------------ 256 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-FIRVNGSEFVHKYLGEGPRMVRD------------------------ 256 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-EEEEEGGGTCCSSCSHHHHHHHH------------------------
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-eEEEecchhhccccchhHHHHHH------------------------
Confidence 45789999999999999999999999988432 2233333222 111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCC-----------ChhhHHHHHHHHH
Q psy318 137 KEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVT-----------DIADAMILKRLFT 205 (438)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~-----------d~~da~iL~~Lfn 205 (438)
+...|++ ..+++|+|||++.. +......+..|++
T Consensus 257 ---------------------------------lF~~A~~--~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~ 301 (428)
T 4b4t_K 257 ---------------------------------VFRLARE--NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT 301 (428)
T ss_dssp ---------------------------------HHHHHHH--TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHH--cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH
Confidence 1122333 45789999999852 1122345677777
Q ss_pred HHHH----CCCEEEEecCCC----hhhhhcCCCCcCCccc-------HHHHHHhhccccccccccchhccc
Q psy318 206 ELFQ----LGVVVVATSNRA----PDDLYKNGLQRSNFLP-------FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 206 ~l~~----~g~~lV~TSN~~----P~~L~~~gl~r~~F~p-------~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
.+-. .++.||+|+|++ |+-+.++++++....| ...+++.++.-+.+..+.|+....
T Consensus 302 ~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA 372 (428)
T 4b4t_K 302 QMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372 (428)
T ss_dssp HHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHH
T ss_pred HhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence 7652 356788999985 6677778888776443 456788888888887778887554
No 13
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.01 E-value=1.9e-09 Score=101.44 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=26.0
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...++|++||||+|+|||+|+.+++..+.
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999998774
No 14
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.98 E-value=1.2e-09 Score=100.37 Aligned_cols=100 Identities=13% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKE 143 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (438)
.+++++|+|++|+|||+|+.++...+... ..++.|...-. +. .
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~-~~-------~---------------------------- 93 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGI-HA-------S---------------------------- 93 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGG-GG-------G----------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHH-HH-------H----------------------------
Confidence 45789999999999999999999888533 23344422200 00 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhh--HHHHHHHHHHHHHCCCE-EEEecCC
Q psy318 144 REREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIAD--AMILKRLFTELFQLGVV-VVATSNR 220 (438)
Q Consensus 144 ~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~d--a~iL~~Lfn~l~~~g~~-lV~TSN~ 220 (438)
.+..+. +.+.+..+|+|||++...... +..|..+++.+.+.+.. +|+|||.
T Consensus 94 -------------------------~~~~~~-~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 94 -------------------------ISTALL-EGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp -------------------------SCGGGG-TTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred -------------------------HHHHHH-HhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 000001 113568999999999876544 67788999999888876 9999999
Q ss_pred Chhhhh
Q psy318 221 APDDLY 226 (438)
Q Consensus 221 ~P~~L~ 226 (438)
.|.++.
T Consensus 148 ~~~~~~ 153 (242)
T 3bos_A 148 SPMEAG 153 (242)
T ss_dssp CTTTTT
T ss_pred CHHHHH
Confidence 887665
No 15
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.97 E-value=8e-10 Score=96.73 Aligned_cols=49 Identities=8% Similarity=-0.060 Sum_probs=38.8
Q ss_pred CCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCC
Q psy318 181 TWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGL 230 (438)
Q Consensus 181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl 230 (438)
..+|+|||++......+..|+++++.....++.+|+|||.+|.++ ..|+
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~-~~~~ 124 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSD-GISC 124 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC---CH
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHH-HhCc
Confidence 468999999999887777788888876555688999999999888 5443
No 16
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.90 E-value=2.1e-09 Score=105.21 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=26.4
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...|+|++||||||||||+|+.+++..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999999999884
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.89 E-value=1e-08 Score=107.71 Aligned_cols=168 Identities=20% Similarity=0.303 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHH
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHA 108 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~ 108 (438)
.|..++.+|..+...+.+ |. . +-.-....|+|++|+||+|+|||+|+.++...+..+ -..+...+|+.....
T Consensus 20 G~~~~~~~l~e~v~~l~~--~~---~--~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 20 GAEEAIEELKEVVEFLKD--PS---K--FNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-FFHISGSDFVELFVG 91 (476)
T ss_dssp SCHHHHHHHHHHHHHHHC--TH---H--HHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-EEEEEGGGTTTCCTT
T ss_pred CcHHHHHHHHHHHHHhhC--hH---H--HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-eeeCCHHHHHHHHhc
Confidence 356677777777665542 10 0 000123568999999999999999999999877432 122222232211000
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEec
Q psy318 109 KIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDE 188 (438)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DE 188 (438)
. .. .+ .|. .+.......+++|+|||
T Consensus 92 -------~----------------------~~--------~~--------~r~----------lf~~A~~~~p~ILfIDE 116 (476)
T 2ce7_A 92 -------V----------------------GA--------AR--------VRD----------LFAQAKAHAPCIVFIDE 116 (476)
T ss_dssp -------H----------------------HH--------HH--------HHH----------HHHHHHHTCSEEEEEET
T ss_pred -------c----------------------cH--------HH--------HHH----------HHHHHHhcCCCEEEEec
Confidence 0 00 00 000 01222224688999999
Q ss_pred CCCCCh-----------hhHHHHHHHHHHHH----HCCCEEEEecCCC----hhhhhcCCCCcCCccc------HHHHHH
Q psy318 189 FQVTDI-----------ADAMILKRLFTELF----QLGVVVVATSNRA----PDDLYKNGLQRSNFLP------FIDVLK 243 (438)
Q Consensus 189 f~v~d~-----------~da~iL~~Lfn~l~----~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p------~I~~L~ 243 (438)
++.+.. .....+..|+..+- ..++.||+|+|++ |.-+.++++++....+ ..++|+
T Consensus 117 id~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~ 196 (476)
T 2ce7_A 117 IDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILE 196 (476)
T ss_dssp GGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHH
T ss_pred hhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHH
Confidence 987532 11234566666653 2467888999985 3334445565543332 345777
Q ss_pred hhccccccccccchhc
Q psy318 244 TYCDVASLNSNIDYRS 259 (438)
Q Consensus 244 ~~~~vv~ld~g~DyR~ 259 (438)
.++..+.+..+.|+..
T Consensus 197 ~~~~~~~l~~~v~l~~ 212 (476)
T 2ce7_A 197 IHTRNKPLAEDVNLEI 212 (476)
T ss_dssp HHHTTSCBCTTCCHHH
T ss_pred HHHHhCCCcchhhHHH
Confidence 7777666665566554
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.86 E-value=5.4e-09 Score=100.09 Aligned_cols=29 Identities=34% Similarity=0.713 Sum_probs=25.9
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...++|++||||+|+|||+|+.+++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35678999999999999999999998874
No 19
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.82 E-value=9.8e-09 Score=100.45 Aligned_cols=29 Identities=34% Similarity=0.727 Sum_probs=26.1
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...++|++||||+|||||+|+.+++..+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 35679999999999999999999998874
No 20
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.79 E-value=8.6e-09 Score=90.19 Aligned_cols=49 Identities=6% Similarity=0.009 Sum_probs=36.0
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~g 229 (438)
+..+|+|||++..+...+..|.+++... ...+.+|+|||.+|.++-..|
T Consensus 76 ~~g~l~ldei~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~~~~~~ 124 (145)
T 3n70_A 76 QGGTLVLSHPEHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVELAASN 124 (145)
T ss_dssp TTSCEEEECGGGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHHHHHHS
T ss_pred CCcEEEEcChHHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHHHHHcC
Confidence 3478999999999877666666665221 224679999999999886544
No 21
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.79 E-value=1.3e-08 Score=112.98 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=53.2
Q ss_pred hcCCeEEEecCCCCCh--------hhHHHHHHHHHHHH---H-CCCEEEEecCCC----hhhhhcCCCCcCCccc-----
Q psy318 179 SKTWLICFDEFQVTDI--------ADAMILKRLFTELF---Q-LGVVVVATSNRA----PDDLYKNGLQRSNFLP----- 237 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~--------~da~iL~~Lfn~l~---~-~g~~lV~TSN~~----P~~L~~~gl~r~~F~p----- 237 (438)
..+.+|+|||++.+-. ....++..|+..+. . .++.||+|+|++ |+-+.+++|+++...+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 4578999999998532 12334445554443 2 346788899984 3333345666665544
Q ss_pred -HHHHHHhhccccccccccchhccc
Q psy318 238 -FIDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 238 -~I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
..++|+.++.-+.+....|+....
T Consensus 376 ~R~~IL~~~l~~~~~~~dvdl~~lA 400 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLADDVDLEQVA 400 (806)
T ss_dssp HHHHHHHHTCSSSEECTTCCHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccCHHHHH
Confidence 467888888888887777876543
No 22
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.76 E-value=2.8e-08 Score=98.49 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..+++|++||||||||||+|+.+++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3567999999999999999999999887
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.75 E-value=2.8e-08 Score=99.83 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=26.1
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...++|++||||||||||+|+.+++..+.
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45678999999999999999999999874
No 24
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.74 E-value=1.7e-08 Score=99.64 Aligned_cols=54 Identities=22% Similarity=0.437 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 30 QEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 30 Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|..++++|..+...-..+ | .+|.....+++|++||||||||||+|+.++++.+.
T Consensus 23 ~~~~~~~l~~~i~~~~~~-~------~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKF-P------HLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CHHHHHHHHHHTHHHHHC-G------GGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhC-H------HHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 555666666554322221 1 12323345679999999999999999999998874
No 25
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.72 E-value=9.8e-09 Score=114.00 Aligned_cols=145 Identities=23% Similarity=0.400 Sum_probs=79.5
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHH
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE 140 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (438)
....|+|++||||||||||+|+.+++..+..+ |.. ...-+.+.++-+.. +
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~------f~~--v~~~~l~s~~vGes----------------------e 556 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQAN------FIS--IKGPELLTMWFGES----------------------E 556 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE------EEE--CCHHHHHTTTCSSC----------------------H
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHHhCCc------eEE--eccchhhccccchH----------------------H
Confidence 35678999999999999999999999887432 111 11111111111000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChh------h-----HHHHHHHHHHHH-
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIA------D-----AMILKRLFTELF- 208 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~------d-----a~iL~~Lfn~l~- 208 (438)
+..+ . +...|++ ..+++|+|||++.+-.. + ..++..|+..+-
T Consensus 557 ~~vr----------------~--------lF~~Ar~--~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg 610 (806)
T 3cf2_A 557 ANVR----------------E--------IFDKARQ--AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp HHHH----------------H--------HHHHHHT--TCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred HHHH----------------H--------HHHHHHH--cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence 0000 0 1112322 35789999999985311 1 134666666664
Q ss_pred ---HCCCEEEEecCCC----hhhhhcCCCCcCCcccH------HHHHHhhccccccccccchhccc
Q psy318 209 ---QLGVVVVATSNRA----PDDLYKNGLQRSNFLPF------IDVLKTYCDVASLNSNIDYRSLK 261 (438)
Q Consensus 209 ---~~g~~lV~TSN~~----P~~L~~~gl~r~~F~p~------I~~L~~~~~vv~ld~g~DyR~~~ 261 (438)
..++.||+|+|+| |+-|.+++|++..+.|. .++|+.+..-..+..+.|+....
T Consensus 611 ~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la 676 (806)
T 3cf2_A 611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA 676 (806)
T ss_dssp SCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-------
T ss_pred CCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence 2345677899986 56666788888777664 56677777777777677776543
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.69 E-value=8.1e-09 Score=98.13 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=25.7
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...|+|++||||+|+|||+|+.+++..+.
T Consensus 41 ~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 41 AKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 35678999999999999999999998764
No 27
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.63 E-value=2.5e-07 Score=87.94 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=36.6
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHH----------HHCCCEEEEecCCChhhhhc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTEL----------FQLGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l----------~~~g~~lV~TSN~~P~~L~~ 227 (438)
...+|+|||++......+..|+++++.. ...++.+|+|||.+|.++..
T Consensus 100 ~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~ 157 (265)
T 2bjv_A 100 DGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVN 157 (265)
T ss_dssp TTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHH
T ss_pred CCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHH
Confidence 3579999999999877666677777653 12356899999999888754
No 28
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.58 E-value=1.2e-07 Score=83.30 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+++++|+|++|+|||+|+..+...+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998874
No 29
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.58 E-value=3.3e-07 Score=96.83 Aligned_cols=55 Identities=27% Similarity=0.417 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++.+|..+...+.+ |. .+. .-....|+|++||||+|+|||+|+.++...+.
T Consensus 35 G~~~~k~~l~~lv~~l~~--~~---~~~--~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 35 GAEEAKEELKEIVEFLKN--PS---RFH--EMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp SCHHHHHHHHHHHHHHHC--GG---GTT--TTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhhc--hh---hhh--hccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 466777778777766543 10 010 01235689999999999999999999998774
No 30
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.55 E-value=1e-07 Score=98.68 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
...++|++||||||||||+|+.+++..+
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3567999999999999999999999887
No 31
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.54 E-value=2.2e-07 Score=81.43 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.3
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+++++|+|++|+|||+|+..++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998874
No 32
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.54 E-value=1.7e-07 Score=84.07 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=31.2
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
....+|+|||++..+......|..+++.. ..+..+|+|+|.+
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 35689999999998876666676666653 3456788898875
No 33
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.54 E-value=2.5e-07 Score=90.94 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=30.4
Q ss_pred CCeEEEecCCCCChh--hHHHHHHHHHHHH----HCCCEEEEecCCCh
Q psy318 181 TWLICFDEFQVTDIA--DAMILKRLFTELF----QLGVVVVATSNRAP 222 (438)
Q Consensus 181 ~~lLc~DEf~v~d~~--da~iL~~Lfn~l~----~~g~~lV~TSN~~P 222 (438)
..+|+|||++..... .+..|..+++.+. ..++.+|+|||.+|
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 459999999987654 5667777777664 44578999999875
No 34
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.53 E-value=1.8e-07 Score=89.32 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=41.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 21 NNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 21 ~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+-+..++...+++.....+.+.+... ....+++++||||+|+|||+|+.++...+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~-------------~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS-------------DRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC-------------SSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc-------------CCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 444556677677777666666666431 124567999999999999999999988763
No 35
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.51 E-value=3.7e-07 Score=92.28 Aligned_cols=28 Identities=32% Similarity=0.616 Sum_probs=24.8
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+++++|||++|+|||+|+.++...+.
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 4578999999999999999999987763
No 36
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.50 E-value=3.5e-07 Score=86.51 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=25.3
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|+|++|||++|+|||+|+.++...+.
T Consensus 43 ~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 5678999999999999999999988774
No 37
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.47 E-value=2.7e-07 Score=97.13 Aligned_cols=28 Identities=36% Similarity=0.737 Sum_probs=25.4
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
...|+|++|||++|||||+|+.++.+.+
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4668999999999999999999998876
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.46 E-value=3.7e-07 Score=91.53 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=25.3
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..++|++|||++|+|||+|+.+++..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999999988763
No 39
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.46 E-value=3.5e-07 Score=89.30 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=41.1
Q ss_pred cCCeEEEecCCCCC-hhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 180 KTWLICFDEFQVTD-IADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d-~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
...+|+|||++... ...+..|.++++..- .++.+|+|+|.++ .+ .+.|..+|.++.+.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~-~l-------------~~~l~sR~~~i~~~ 163 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANNID-GI-------------IKPLQSRCRVITFG 163 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG-GS-------------CTTHHHHSEEEECC
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc-cc-------------CHHHHhhCcEEEeC
Confidence 67899999999987 665666777776543 4578999999865 11 12455667777775
No 40
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.46 E-value=5.3e-07 Score=89.22 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+++++|||++|+|||+|+..+++.+.
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999998873
No 41
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.43 E-value=5e-07 Score=87.01 Aligned_cols=28 Identities=36% Similarity=0.720 Sum_probs=25.1
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..++|++||||+|+|||+|+.++...+.
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999988774
No 42
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.43 E-value=1.8e-06 Score=83.82 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=25.9
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...|+|++||||+|+|||+|+.++...+.
T Consensus 41 l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 41 LVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 45679999999999999999999988764
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.41 E-value=5.9e-07 Score=93.44 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=23.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+++||||+|+|||+|+.++.+.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 6899999999999999999998874
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.40 E-value=2.2e-06 Score=84.73 Aligned_cols=48 Identities=19% Similarity=0.132 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++.++..+.+.+.. ...++++++||||+|+|||+|+.++...+.
T Consensus 48 G~~~~~~~l~~l~~~~~~--------------~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIRE--------------GKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp SCHHHHHHHHHHHHHHHT--------------TCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHc--------------CCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 366666677666666543 123368999999999999999999999885
No 45
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.38 E-value=1.7e-06 Score=81.55 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.7
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...|+|++||||+|+|||+|+.++...+.
T Consensus 46 ~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 46 ARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999988774
No 46
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.38 E-value=5e-07 Score=88.87 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=35.1
Q ss_pred CCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCC
Q psy318 181 TWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNG 229 (438)
Q Consensus 181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~g 229 (438)
..+|+|||++......+..|.++++... ...+.+|+|||.++.++-..|
T Consensus 97 ~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 97 GGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp TSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence 4689999999998766555666655431 123689999999987765543
No 47
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.36 E-value=1.7e-06 Score=83.16 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=25.3
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..++|++|+||+|+|||+|+.++...+.
T Consensus 71 ~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 71 RIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 5678999999999999999999988774
No 48
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.34 E-value=2e-06 Score=82.90 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=32.7
Q ss_pred CCeEEEecCCCCChhhHHHHHHHHHHHHH----------CCCEEEEecCCChhhhhc
Q psy318 181 TWLICFDEFQVTDIADAMILKRLFTELFQ----------LGVVVVATSNRAPDDLYK 227 (438)
Q Consensus 181 ~~lLc~DEf~v~d~~da~iL~~Lfn~l~~----------~g~~lV~TSN~~P~~L~~ 227 (438)
..+|+|||++..+..-+..|..+++...- .++.+|+|||..+..+..
T Consensus 120 ~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 120 YSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred CeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHh
Confidence 46999999999887655556666654320 134599999997765554
No 49
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.6e-06 Score=85.12 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=25.6
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|.++|||||||||||+++..+...+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999884
No 50
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.33 E-value=6.8e-07 Score=86.25 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=24.6
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+.+++||||+|+|||+|+.++...+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4456899999999999999999988874
No 51
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.32 E-value=9.2e-07 Score=83.66 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.0
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|..++++||||||+|||+++.++.+.+.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999988763
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=1.2e-06 Score=84.43 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=31.0
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
.+..+|+|||++......+..|..+++.. ..++.+|+|+|.++
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMF-SSNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhc-CCCCeEEEEeCCcc
Confidence 35789999999998876666666666543 24567888988753
No 53
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.30 E-value=3.4e-06 Score=82.59 Aligned_cols=48 Identities=27% Similarity=0.303 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++.+|..+...... ....+.+++|+|++|+|||+|+.++...+.
T Consensus 33 G~~~~~~~l~~~l~~~~~--------------~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 33 GQESIKKNLNVFIAAAKK--------------RNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp SCHHHHHHHHHHHHHHHH--------------TTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHh--------------cCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 355566666655554432 123467899999999999999999987763
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.28 E-value=4.7e-06 Score=82.23 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=30.8
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHH---CCCEEEEecCCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQ---LGVVVVATSNRA 221 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~---~g~~lV~TSN~~ 221 (438)
...+|+|||++..+......|.++++.+-. .++.+|++||.+
T Consensus 125 ~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 125 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 467999999999875555556666655554 577888898876
No 55
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.22 E-value=1.1e-06 Score=82.30 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=43.2
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
.+.+++|++||+|.. .+ +-.+++.|.+.|++||+++=.- -++++.|.+...+|.-.-.|..|.
T Consensus 89 ~~~~DvIlIDEaQFf--k~---~ve~~~~L~~~gk~VI~~GL~~-------DF~~~~F~~~~~Ll~~Ad~v~kl~ 151 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF--PD---IVEFCEAMANAGKTVIVAALDG-------TFQRKPFGAILNLVPLAESVVKLT 151 (195)
T ss_dssp HHTCSEEEESSGGGC--TT---HHHHHHHHHHTTCEEEEEEESB-------CTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCCEEEEEchhhh--HH---HHHHHHHHHHCCCeEEEEeccc-------ccccccchhHHHHHHhcCeEEEee
Confidence 567999999999999 33 3345688889999999886442 266677777666553333344444
No 56
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=2.9e-06 Score=83.38 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=33.5
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
..+..+|+|||++..+...+..|.++++..- .++.+|++||.++
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhc-CCCEEEEEeCCHH
Confidence 4578899999999998877777777777653 4577888888754
No 57
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.20 E-value=3.4e-06 Score=81.71 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+++++|+|++|+|||+|+.++.+.+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988774
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.15 E-value=6.8e-06 Score=90.14 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.3
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+++|+||+|+|||+|+.++...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 599999999999999999998873
No 59
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.15 E-value=3.7e-06 Score=75.84 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++.++|+|++|+|||+|+..++..+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998874
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=5.3e-06 Score=81.04 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=38.3
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
...+|+|||++..+...+..|..+++..- ....+|+++|.+. . ++..|..+|.++.+.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~-~-------------l~~~l~sR~~~i~~~ 190 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYS-GVTRFCLICNYVT-R-------------IIDPLASQCSKFRFK 190 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG-G-------------SCHHHHHHSEEEECC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcC-CCceEEEEeCchh-h-------------CcchhhccCceEEeC
Confidence 45699999999988776666777776643 2356777888643 2 223455666666554
No 61
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.14 E-value=2.6e-06 Score=81.60 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=25.2
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+++++||||+|+|||+|+.++...+.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999998874
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.12 E-value=5e-06 Score=81.46 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=28.8
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
+.+++||||||+|||+|+.++...+..+ -.++.++.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~-~~~i~~~~ 81 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLD-FHRIQFTP 81 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCC-EEEEECCT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCC-eEEEecCC
Confidence 4689999999999999999999887532 35566653
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.09 E-value=2.7e-06 Score=83.37 Aligned_cols=28 Identities=29% Similarity=0.689 Sum_probs=25.0
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+..++|+|++|+|||+|+..+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999998874
No 64
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.06 E-value=4.6e-06 Score=78.03 Aligned_cols=129 Identities=11% Similarity=0.074 Sum_probs=72.0
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHH-----HHHHHHHHHHhhhcccCCCCCCCCCccccchHHH-
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDV-----HAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEE- 140 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (438)
-|.+|+++|.|||+++=...-.+. .+..||.|-+|+..- ...+.++.-.- ...+ .++. +..+.
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~---~~~g--~gf~-----~~~~~~ 98 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIKGTWPNGERNLLEPHGVEF---QVMA--TGFT-----WETQNR 98 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSCCSSCCHHHHHHGGGTCEE---EECC--TTCC-----CCGGGH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeCCCCCccHHHHHHhCCcEE---EEcc--cccc-----cCCCCc
Confidence 489999999999999877766553 557899999998631 01111110000 0000 0111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCchHHHHHHh--hcCCeEEEecCCCC---ChhhHHHHHHHHHHHHHCCCEEE
Q psy318 141 EKEREREREREREREREREREREAKSYDPIPPVANDII--SKTWLICFDEFQVT---DIADAMILKRLFTELFQLGVVVV 215 (438)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~--~~~~lLc~DEf~v~---d~~da~iL~~Lfn~l~~~g~~lV 215 (438)
+....+.++.+ ..+++.+ .++|+|++||+... +.-+...++.++....+ ...||
T Consensus 99 ~~~~~~a~~~l--------------------~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~-~~~vI 157 (196)
T 1g5t_A 99 EADTAACMAVW--------------------QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG-HQTVI 157 (196)
T ss_dssp HHHHHHHHHHH--------------------HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT-TCEEE
T ss_pred HHHHHHHHHHH--------------------HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC-CCEEE
Confidence 11111111111 1255555 56999999999541 22222336666665553 36899
Q ss_pred EecCCChhhhhc
Q psy318 216 ATSNRAPDDLYK 227 (438)
Q Consensus 216 ~TSN~~P~~L~~ 227 (438)
+|+|.+|.+|-.
T Consensus 158 lTGr~ap~~l~e 169 (196)
T 1g5t_A 158 ITGRGCHRDILD 169 (196)
T ss_dssp EECSSCCHHHHH
T ss_pred EECCCCcHHHHH
Confidence 999999998865
No 65
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=6.3e-06 Score=81.35 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=39.0
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
+..++++||++......+..|..+++..- ....+|+++|.+. .+ +..|..+|.++.+.
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~n~~~-~i-------------~~~i~sR~~~~~~~ 167 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYT-KNTRFCVLANYAH-KL-------------TPALLSQCTRFRFQ 167 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG-GS-------------CHHHHTTSEEEECC
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCC-CCeEEEEEecCcc-cc-------------chhHHhhceeEecc
Confidence 47899999999987766666777777543 3457778888642 11 23456666666554
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=8.7e-06 Score=78.20 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=29.3
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
...+|+|||++......+..|..+++.. ..+..+|+++|.+
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~-~~~~~~il~~~~~ 147 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELY-SNSTRFAFACNQS 147 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhcc-CCCceEEEEeCCh
Confidence 3789999999998766555566666653 2446788888763
No 67
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.03 E-value=8.2e-07 Score=98.64 Aligned_cols=28 Identities=36% Similarity=0.733 Sum_probs=25.2
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..++|++||||||||||+|+.++...+.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998873
No 68
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.97 E-value=2.5e-06 Score=90.04 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+|+|+||||+|||+|+.++...+.
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 46899999999999999999998774
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.92 E-value=3e-05 Score=84.83 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.7
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM 103 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm 103 (438)
.++|+||+|+|||+|+.++...+. ..-.++...+++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~-~~~~~i~~s~~~ 525 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALG-IELLRFDMSEYM 525 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-CEEEEEEGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc-CCEEEEechhhc
Confidence 599999999999999999998884 223455555554
No 70
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.88 E-value=3.4e-06 Score=80.88 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=22.0
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+++||||+|+|||+++.++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 499999999999999999998873
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.87 E-value=4.9e-05 Score=84.61 Aligned_cols=61 Identities=11% Similarity=0.216 Sum_probs=40.3
Q ss_pred hHHHH----HHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH
Q psy318 11 PSKQY----YEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 11 p~~~Y----~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~ 86 (438)
.++.| .+....+.+.+=..|...+.++..+ |. ...+++++|+|++|+|||+|+.++.
T Consensus 152 ~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~---l~----------------~~~~~~vlL~G~pG~GKT~la~~la 212 (854)
T 1qvr_A 152 ALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQI---LL----------------RRTKNNPVLIGEPGVGKTAIVEGLA 212 (854)
T ss_dssp HHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHH---HH----------------CSSCCCCEEEECTTSCHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHH---Hh----------------cCCCCceEEEcCCCCCHHHHHHHHH
Confidence 45554 3455566665544555544444433 21 1235689999999999999999999
Q ss_pred Hhhh
Q psy318 87 ESCE 90 (438)
Q Consensus 87 ~~l~ 90 (438)
..+.
T Consensus 213 ~~l~ 216 (854)
T 1qvr_A 213 QRIV 216 (854)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8873
No 72
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=9.7e-06 Score=85.23 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.+++++||||+|+|||+|+.++...+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999887
No 73
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.87 E-value=9.1e-06 Score=79.38 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.+++|||++|+|||+|+.++...+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 35799999999999999999998774
No 74
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.86 E-value=2.7e-05 Score=77.83 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=24.4
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+.+++||||+|+|||+|+.++...+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998873
No 75
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.82 E-value=8.1e-05 Score=82.67 Aligned_cols=29 Identities=34% Similarity=0.702 Sum_probs=25.8
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...++|++|||++|||||+|+.++...+.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999988764
No 76
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.82 E-value=6.5e-05 Score=74.84 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=25.2
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+++++|+||+|||||+|+.++...+.
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999998874
No 77
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.81 E-value=1.8e-05 Score=77.28 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=45.1
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHH-------HHHH-----CCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFT-------ELFQ-----LGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYC 246 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn-------~l~~-----~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~ 246 (438)
....|++.||...++.+.. .+.++|. .-+. ...++|+|||..+.....++... .+.+.-|+++|
T Consensus 147 ~~k~i~l~Ee~~~~~d~~~-~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s---~~~~~~L~sR~ 222 (267)
T 1u0j_A 147 VDKMVIWWEEGKMTAKVVE-SAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTT---FEHQQPLQDRM 222 (267)
T ss_dssp SSCSEEEECSCCEETTTHH-HHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEE---CTTHHHHHTTE
T ss_pred cccEEEEeccccchhHHHH-HHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccc---hhhhHHHhhhE
Confidence 4568888899888764432 3555554 1112 44589999999877755443321 13456699999
Q ss_pred cccccc
Q psy318 247 DVASLN 252 (438)
Q Consensus 247 ~vv~ld 252 (438)
.++.+.
T Consensus 223 ~~f~F~ 228 (267)
T 1u0j_A 223 FKFELT 228 (267)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999998
No 78
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.81 E-value=1.7e-05 Score=75.82 Aligned_cols=71 Identities=21% Similarity=0.151 Sum_probs=46.6
Q ss_pred hcCCeEEEecCCCCC--hhhHHHHHHHHHHHHHCCCEEEEecCCCh-hhhhcC-----CCCcCCcccHHHHHHhhccccc
Q psy318 179 SKTWLICFDEFQVTD--IADAMILKRLFTELFQLGVVVVATSNRAP-DDLYKN-----GLQRSNFLPFIDVLKTYCDVAS 250 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d--~~da~iL~~Lfn~l~~~g~~lV~TSN~~P-~~L~~~-----gl~r~~F~p~I~~L~~~~~vv~ 250 (438)
..++++++||+.... ......++..+..+++.|..+++|+|.-. +.|..- |..-.- .+-+.+.+.|.-|.
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e--~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRE--TLPDWVLQEAFDLV 160 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCS--CBCHHHHHTCSEEE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCC--cCccHHHhhCCeEE
Confidence 579999999999752 23334567777889999999999999753 233221 333221 23378888885444
Q ss_pred c
Q psy318 251 L 251 (438)
Q Consensus 251 l 251 (438)
+
T Consensus 161 l 161 (228)
T 2r8r_A 161 L 161 (228)
T ss_dssp E
T ss_pred E
Confidence 4
No 79
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.80 E-value=2.5e-05 Score=76.78 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+..++|||++|+|||+|+.++...+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998874
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.76 E-value=6.4e-05 Score=83.69 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=23.0
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..++|+||+|+|||+|+.++...+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998884
No 81
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.76 E-value=0.00014 Score=75.13 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH
Q psy318 25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML 104 (438)
Q Consensus 25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~ 104 (438)
.+++.|.+|+..+... +.+ . ...++|.|++|||||+++..+...+....+.++..-.|..
T Consensus 25 ~Ln~~Q~~av~~~~~~---i~~----------------~-~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~ 84 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKA---IKE----------------K-KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTH 84 (459)
T ss_dssp CCCHHHHHHHHHHHHH---HHS----------------S-SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSH
T ss_pred cCCHHHHHHHHHHHHH---Hhc----------------C-CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcH
Confidence 3689999999876543 221 1 1279999999999999999999888544444666666655
Q ss_pred HHHHHHH
Q psy318 105 DVHAKIH 111 (438)
Q Consensus 105 ~v~~~l~ 111 (438)
...+.|.
T Consensus 85 ~Aa~~l~ 91 (459)
T 3upu_A 85 AAKKILS 91 (459)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.72 E-value=7e-05 Score=74.14 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 28 ~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.|..++..|....+ + ...|.+++||||+|+|||.++.+|...+.
T Consensus 5 pw~~~~~~~l~~~i~---~---------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQ---A---------------GRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp GGGHHHHHHHHHHHH---T---------------TCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHH---c---------------CCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 567777666655432 1 23467899999999999999999999884
No 83
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.68 E-value=3e-05 Score=82.32 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=28.1
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
.+..++|+||+|+|||+|+.++...+.. ...++.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence 4567999999999999999999988842 234454433
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.67 E-value=5.6e-05 Score=75.18 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCCceEE--EccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYI--YGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL--~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+..++| ||++|+|||+|+..+++.+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 4568999 99999999999999998874
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.66 E-value=0.00019 Score=76.86 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=34.7
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhHHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHE 112 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~ 112 (438)
+-++|.|++|||||+++..+...+.. .+.++.+-.+.....++|.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEecCcHHHHHHhHh
Confidence 46899999999999999999887753 35677776666655555543
No 86
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.66 E-value=0.00019 Score=72.14 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.3
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
..+.|+|+||+|||+|+-.+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 44799999999999999999775
No 87
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.60 E-value=9.5e-05 Score=88.89 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=32.6
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM 103 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm 103 (438)
..+.++++.||||+|+|||||+.++...+. ....++-|..|-
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 1464 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcc
Confidence 356788999999999999999999977764 335566665554
No 88
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.57 E-value=0.0007 Score=61.41 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.|.|++|+|||+|+.++...+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999987764
No 89
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.49 E-value=2.9e-05 Score=70.99 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=38.7
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcc-ccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD-VASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~-vv~ld 252 (438)
+.++|+|||+|..+..+. ..+..+.+.|..+|+|+... .+++..|.+... |...++ +.++.
T Consensus 76 ~~dvviIDE~Q~~~~~~~----~~l~~l~~~~~~Vi~~Gl~~-------~f~~~~f~~~~~-ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLF----EVVKDLLDRGIDVFCAGLDL-------THKQNPFETTAL-LLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGGSCTTHH----HHHHHHHHTTCEEEEEEESB-------CTTSCBCHHHHH-HHHHCSEEEECC
T ss_pred CCCEEEEECcccCCHHHH----HHHHHHHHCCCCEEEEeecc-------ccccCCccchHH-HHHHhhheEEee
Confidence 578999999999865533 34455556688888887643 144455555444 444554 44555
No 90
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.00016 Score=79.01 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=24.7
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..+++++|+|++|+|||+|+.++...+.
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998773
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.39 E-value=0.00041 Score=66.98 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.6
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.++|+|+.|+|||.|+..+.+.+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999988764
No 92
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.31 E-value=0.00026 Score=67.85 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=31.6
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+..+++|+|||+|... + +..+.+.+.+.|+.||+|+-.
T Consensus 88 ~~~~dvViIDEaQF~~--~---v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFP--D---IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp HTTCSEEEESSGGGCT--T---HHHHHHHHHHTTCEEEEECCS
T ss_pred hccCCEEEEEchhhhh--h---HHHHHHHHHhCCCEEEEEecc
Confidence 3679999999999985 2 667778888899999999876
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.28 E-value=0.0003 Score=64.99 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=32.6
Q ss_pred hcCCeEEEecCCCC-----Ch-hhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQVT-----DI-ADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v~-----d~-~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.++++|++||.... |+ .....+..++..+.+.|+.+|++|...
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 57999999998753 32 333458888998888898888888764
No 94
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.27 E-value=0.00025 Score=73.22 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 29 HQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 29 ~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|..++.+|..+.+.+.. ...+|+|++||||||||||+|+.++...+.
T Consensus 41 G~~~~~~~l~~~~~~~~~--------------~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 41 GQENAREACGVIVELIKS--------------KKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp SCHHHHHHHHHHHHHHHT--------------TCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHh--------------CCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 477777777777665532 224568999999999999999999998874
No 95
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.26 E-value=0.0007 Score=64.03 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=43.5
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
.+++|+|||+|..+... + .++..+.+.|+.||+|+-.- -++++.|.+.-.+|.-.=.|.+|.
T Consensus 101 ~~dvViIDEaQF~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~-------DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDI---V-EVVQVLANRGYRVIVAGLDQ-------DFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGGSCTTH---H-HHHHHHHHTTCEEEEEECSB-------CTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECcccCCHHH---H-HHHHHHhhCCCEEEEEeccc-------ccccCccccHHHHHHhcccEEeee
Confidence 58999999999987543 2 45666667799999988652 266777777776664444455555
No 96
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.23 E-value=0.00043 Score=71.93 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.2
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..+.+++|+|+||+|||+|+.++...+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999887
No 97
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.23 E-value=0.00077 Score=81.23 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM 103 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm 103 (438)
.+.+..++|+|++|||||+|+-.|..... +...++-|-.|-
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~-k~Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAE 1118 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEEcc
Confidence 45667899999999999999999987663 335556665543
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.21 E-value=0.00029 Score=66.80 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=39.0
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcc-ccccc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCD-VASLN 252 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~-vv~ld 252 (438)
.+++|++||+|..+.. +..++..+.+.|+.||+|+-.. .+.++.|.+...++. .++ |..|.
T Consensus 89 ~~dvViIDEaQ~l~~~----~ve~l~~L~~~gi~Vil~Gl~~-------df~~~~F~~~~~Ll~-lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDR----ICEVANILAENGFVVIISGLDK-------NFKGEPFGPIAKLFT-YADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGGSCTH----HHHHHHHHHHTTCEEEEECCSB-------CTTSSBCTTHHHHHH-HCSEEEECC
T ss_pred CCCEEEEecCccCcHH----HHHHHHHHHhCCCeEEEEeccc-------cccCCcCCCcHHHHH-HhheEeecc
Confidence 4899999999997644 2234455566789999998753 255566666544443 433 44443
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.19 E-value=0.0026 Score=60.78 Aligned_cols=48 Identities=8% Similarity=0.110 Sum_probs=31.3
Q ss_pred HHHHhhcCCeEEEecCCC---CChhhH---HHHHHHHHHHH-HCCCEEEEecCCC
Q psy318 174 ANDIISKTWLICFDEFQV---TDIADA---MILKRLFTELF-QLGVVVVATSNRA 221 (438)
Q Consensus 174 a~~~~~~~~lLc~DEf~v---~d~~da---~iL~~Lfn~l~-~~g~~lV~TSN~~ 221 (438)
+..++.++++|+|||+.. .|.... ..+.+.+..+. +.|+.+|+++...
T Consensus 127 i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 127 LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 455667899999999997 343322 33445555554 5688888877653
No 100
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.18 E-value=0.0017 Score=62.49 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=22.0
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+.++|+|+.|+|||.|+..+.+.+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 579999999999999999998765
No 101
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.16 E-value=0.003 Score=59.73 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 47899999999999999987 7988888899999988754 8777777765
No 102
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.12 E-value=0.00053 Score=65.09 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=72.5
Q ss_pred eEEEccCCCCHhH-HHHHHHHhhhcccceeeechhhhHHHHHHHHHHHHHhhhcccCCCCCCCCCccccchHHHHHHHHH
Q psy318 68 LYIYGAVGGGKTM-LMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRLDVMKEEEEKERER 146 (438)
Q Consensus 68 lyL~G~vG~GKT~-Lmd~f~~~l~~~~k~R~Hf~~fm~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (438)
.+++|+.|+|||. |+..+.+... .+.++..-++..+-...........+ ......
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D~R~~~~~I~Sr~G------------~~~~a~---------- 86 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAIDDRYHKEKVVSHNG------------NAIEAI---------- 86 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC-----------CBTT------------BCCEEE----------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccCCcchhhhHHHhcC------------CceeeE----------
Confidence 5789999999999 8888866653 34567776776654321111111100 000000
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCchHHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 147 EREREREREREREREREAKSYDPIPPVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 147 ~~~~~~~~~~~~~r~~~~~~~d~i~~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
..+....+...+....++|.+||.|..+... ...++.+.+.|++|++++=.
T Consensus 87 -------------------~v~~~~di~~~i~~~~dvV~IDEaQFf~~~~----v~~l~~la~~gi~Vi~~GLd------ 137 (219)
T 3e2i_A 87 -------------------NISKASEIMTHDLTNVDVIGIDEVQFFDDEI----VSIVEKLSADGHRVIVAGLD------ 137 (219)
T ss_dssp -------------------EESSGGGGGGSCCTTCSEEEECCGGGSCTHH----HHHHHHHHHTTCEEEEEEES------
T ss_pred -------------------EeCCHHHHHHHHhcCCCEEEEechhcCCHHH----HHHHHHHHHCCCEEEEeecc------
Confidence 0011111222223578999999999987542 23445555789988887642
Q ss_pred cCCCCcCCcccHHHHHHhhccccccc
Q psy318 227 KNGLQRSNFLPFIDVLKTYCDVASLN 252 (438)
Q Consensus 227 ~~gl~r~~F~p~I~~L~~~~~vv~ld 252 (438)
.-+.++.|.+...+|.-.=.+..|.
T Consensus 138 -~DF~~~~F~~~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 138 -MDFRGEPFEPMPKLMAVSEQVTKLQ 162 (219)
T ss_dssp -BCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred -cccccCCCccHHHHHHhcceEEEee
Confidence 2367788888877665444455555
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.10 E-value=0.0026 Score=57.62 Aligned_cols=43 Identities=16% Similarity=0.091 Sum_probs=28.3
Q ss_pred hcCC--eEEEecCCCC---ChhhHHHHHHHHHHHH-HCCCEEEEecCCC
Q psy318 179 SKTW--LICFDEFQVT---DIADAMILKRLFTELF-QLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~--lLc~DEf~v~---d~~da~iL~~Lfn~l~-~~g~~lV~TSN~~ 221 (438)
.+++ +|++||+... |......+.+.+..+. +.|+.+|+++...
T Consensus 120 ~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4688 9999999953 5544445555666554 5687777777654
No 104
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.03 E-value=0.007 Score=56.68 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47889999999999999987 79888888999999998778777777765
No 105
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.01 E-value=0.01 Score=56.91 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=42.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus 156 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 205 (256)
T 1vpl_A 156 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205 (256)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47899999999999999987 79888888999999988778777777764
No 106
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.96 E-value=0.00097 Score=82.40 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=28.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFM 103 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm 103 (438)
+++|+|+||||||||||+..+....+.-.-..++|+...
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t 1305 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT 1305 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC
Confidence 589999999999999999655555433334567776654
No 107
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.96 E-value=0.0013 Score=58.61 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChh----------------hHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIA----------------DAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~----------------da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+..++.+|++||--. .|.. ....+..++..+.+.|..+|++|..
T Consensus 93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~ 158 (171)
T 4gp7_A 93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNS 158 (171)
T ss_dssp HHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECS
T ss_pred HHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCC
Confidence 46888889999999999764 3443 2244566666676678777777655
No 108
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.95 E-value=0.0085 Score=58.23 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|++|...
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl 204 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH
Confidence 47899999999999999887 79888888999999987 5687777777653
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.95 E-value=0.0012 Score=61.03 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=40.5
Q ss_pred hcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhcccc-ccc
Q psy318 179 SKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVA-SLN 252 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv-~ld 252 (438)
...++|++||.|..+... ..++..+.+.|+.||+|+-.. -++++.|.+.-.+| ..++.| ++.
T Consensus 80 ~~~dvViIDEaqfl~~~~----v~~l~~l~~~~~~Vi~~Gl~~-------df~~~~F~~~~~L~-~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEI----VEIVNKIAESGRRVICAGLDM-------DFRGKPFGPIPELM-AIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGGSCTHH----HHHHHHHHHTTCEEEEEECSB-------CTTSCBCTTHHHHH-HHCSEEEECC
T ss_pred ccCCEEEEECCCCCCHHH----HHHHHHHHhCCCEEEEEeccc-------ccccCcCccHHHHH-HHcccEEeee
Confidence 358999999999987543 234566667788999987653 25566675555444 444433 454
No 110
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.90 E-value=0.0014 Score=71.83 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.2
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..+.+++|||+||+|||+|+.++...+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999887
No 111
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.87 E-value=0.023 Score=54.76 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47899999999999999987 79888888999999988778777777764
No 112
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.81 E-value=0.0048 Score=57.79 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46889999999999999987 68888888889998887667777777765
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.80 E-value=0.0045 Score=56.78 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=22.3
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+...-+.|+|++|+|||+|+..+...+
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 344568999999999999999987753
No 114
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.76 E-value=0.00013 Score=78.48 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=22.1
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+|+|+||||+|||+|+.++...++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 799999999999999999987764
No 115
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.73 E-value=0.012 Score=56.19 Aligned_cols=49 Identities=33% Similarity=0.358 Sum_probs=41.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+. |..+|++|..
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47899999999999999987 7988888899999998776 7777777754
No 116
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.72 E-value=0.01 Score=56.95 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=26.9
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
....=+.|.|++|+|||.|+..+...+......++.|
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~ 69 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 3344588999999999999999887775433435544
No 117
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.71 E-value=0.009 Score=60.42 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=38.8
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCCCc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGLQR 232 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl~r 232 (438)
+--.|+|||++......+..|.++++.-. ...+.+|+|||..+.++-..|..|
T Consensus 231 ~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr 293 (387)
T 1ny5_A 231 DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFR 293 (387)
T ss_dssp TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCcc
Confidence 34799999999998877777777766421 124579999999998887655443
No 118
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.67 E-value=0.014 Score=55.50 Aligned_cols=49 Identities=10% Similarity=0.086 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47899999999999999887 78888888889998886667777777765
No 119
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.049 Score=50.48 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=25.8
Q ss_pred CCceEEEccCCCCHhHHHHHHH-Hhhhcc---cceeeechhhhHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFY-ESCETK---QKQRVHFNKFMLDVH 107 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~-~~l~~~---~k~R~Hf~~fm~~v~ 107 (438)
.+-+.+.|++|||||.++-++. +.+... .+.++-|-.-...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la 122 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISA 122 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHH
Confidence 3679999999999997665543 322211 123666654444443
No 120
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.66 E-value=0.0066 Score=57.06 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=19.8
Q ss_pred ceEEEccCCCCHhHHHHHHHHhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.++|.|++|+|||+++-++...+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999988876655
No 121
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.65 E-value=0.015 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=21.2
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHH
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
+...-+.|+|++|+|||+|+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445589999999999999999876
No 122
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.63 E-value=0.0094 Score=56.99 Aligned_cols=49 Identities=27% Similarity=0.357 Sum_probs=41.6
Q ss_pred HHHHHHhhcCC-------eEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTW-------LICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~-------lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.+++ +|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46888999999 999999987 79888888999999987778777777754
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.011 Score=54.26 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=30.8
Q ss_pred hcCCeEEEecCCCC---Chhh-HHHHHHHHHHHHHCCCEEEEecCCCh
Q psy318 179 SKTWLICFDEFQVT---DIAD-AMILKRLFTELFQLGVVVVATSNRAP 222 (438)
Q Consensus 179 ~~~~lLc~DEf~v~---d~~d-a~iL~~Lfn~l~~~g~~lV~TSN~~P 222 (438)
.++++|++|+++.. +... ...+..|.+.+.+.|+.+|++++...
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 35899999999985 3322 34456666666788888888887653
No 124
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.50 E-value=0.0055 Score=55.65 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..=+.|.|++|+|||+|+.++...+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3448899999999999999997654
No 125
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.49 E-value=0.0076 Score=71.83 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=53.7
Q ss_pred CcEEEeeHHH-----------------HhcCCCChhhHHHHhh------ccCEEEEcCCCCCCcCC-ch----------H
Q psy318 317 GQILEATFDE-----------------LCSRDLGSSDYLHICQ------IFHTVIIRNVPQLNIKL-RS----------Q 362 (438)
Q Consensus 317 ~~va~f~F~e-----------------LC~~plg~aDYl~la~------~f~ti~i~~VP~l~~~~-~n----------~ 362 (438)
+.+|+|+|++ ||.+|-.-.+-|++++ ..+.|+|+-|.-|.... -+ +
T Consensus 1460 ~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ 1539 (1706)
T 3cmw_A 1460 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 1539 (1706)
T ss_dssp CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHH
T ss_pred CeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHH
Confidence 5678899963 4557766677777765 57899999999887642 23 6
Q ss_pred HHHH----HHHHHHhhhCCCeEEEEeCC--Chhhhcccc
Q psy318 363 SRRF----ITLIDALYDNNIRLVISSDV--PLNKLFSNE 395 (438)
Q Consensus 363 arRF----I~LID~lYd~~vkL~~~a~~--~~~~Lf~~~ 395 (438)
||.+ .-|.+.+-..+|-+++.... -+--.|...
T Consensus 1540 ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1578 (1706)
T 3cmw_A 1540 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 1578 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEECBC--------CC
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccccccceecCCC
Confidence 6665 67899999999999988765 233445443
No 126
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.42 E-value=0.038 Score=55.73 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus 155 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 155 ALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp HHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 47899999999999999887 7888777788888888654 7777777654
No 127
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.42 E-value=0.015 Score=58.57 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=27.4
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
.+...-+.|+|++|+|||+|+-.+...+... ..++-|-.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid 98 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID 98 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 3445669999999999999998877665422 33555533
No 128
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.41 E-value=0.03 Score=57.06 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|+.|..
T Consensus 143 aiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 193 (381)
T 3rlf_A 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (381)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 47899999999999999887 7888778888888888654 8877777665
No 129
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.41 E-value=0.0071 Score=64.65 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...++|+||+|+|||+|+.++...++
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988775
No 130
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.33 E-value=0.024 Score=57.57 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus 151 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47899999999999999887 7888777788888888654 7777777664
No 131
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.31 E-value=0.01 Score=60.19 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+..+..+..++..+.+ .|..+|+.|..
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 47899999999999999987 798888888999999865 48777777665
No 132
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.30 E-value=0.0022 Score=63.32 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCChH-HHHHHHHHcCCCCCC-----HHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHH
Q psy318 8 SSLPS-KQYYEKLSNNEIQED-----KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTML 81 (438)
Q Consensus 8 ~~~p~-~~Y~~~v~~g~l~~D-----~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~L 81 (438)
++.|- ..|+..+.. +++. -.|..++..|......-.. ....+..++||||+|+|||+|
T Consensus 4 ~~~~~~~~~~~~~~~--lr~~~l~~~~g~~~~~~~l~~~i~~~~~--------------~~~~~~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 4 FLTPERTVYDSGVQF--LRPKSLDEFIGQENVKKKLSLALEAAKM--------------RGEVLDHVLLAGPPGLGKTTL 67 (334)
T ss_dssp -------------CT--TSCSSGGGCCSCHHHHHHHHHHHHHHHH--------------HTCCCCCEEEESSTTSSHHHH
T ss_pred ccccchHHHHHHHHH--cCCccHHHccCcHHHHHHHHHHHHHHHh--------------cCCCCCeEEEECCCCCcHHHH
Confidence 45564 557765543 3332 2466666666554332111 112456799999999999999
Q ss_pred HHHHHHhhh
Q psy318 82 MDIFYESCE 90 (438)
Q Consensus 82 md~f~~~l~ 90 (438)
+.++...+.
T Consensus 68 a~~ia~~l~ 76 (334)
T 1in4_A 68 AHIIASELQ 76 (334)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 999998873
No 133
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.012 Score=63.36 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|+|||--. +|+.....+..++..+.+.|..+|+.|..
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 280 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSC
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47889999999999999887 79888888999999998888877777765
No 134
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.26 E-value=0.013 Score=62.19 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|+.+|++|..
T Consensus 168 ~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999999999999876 79888888999999998888878877765
No 135
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.25 E-value=0.071 Score=47.54 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318 14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD 83 (438)
Q Consensus 14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd 83 (438)
..+.+...|--.+-+.|.+++..+.. .+.+++.+|+|+|||...-
T Consensus 14 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 14 LLMGIFEMGWEKPSPIQEESIPIALS-------------------------GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp HHHHHHTTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCSSSTTHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHcc-------------------------CCCEEEECCCCCchHHHHH
Confidence 34455555555789999998875421 1579999999999996544
No 136
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.24 E-value=0.054 Score=54.88 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+... |..+|++|..
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 47899999999999999886 7888777788888888654 7777776654
No 137
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.23 E-value=0.021 Score=54.78 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.++..+..++++|++||.- |.... ..++... ..|..+++|+..
T Consensus 90 ~la~aL~~~p~illlDEp~--D~~~~---~~~l~~~-~~g~~vl~t~H~ 132 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMR--DLETV---ETALRAA-ETGHLVFGTLHT 132 (261)
T ss_dssp HHHHHHHHCCSEEEESCCC--SHHHH---HHHHHHH-HTTCEEEEEECC
T ss_pred HHHHHHhhCCCEEEeCCCC--CHHHH---HHHHHHH-ccCCEEEEEeCc
Confidence 4677778899999999997 54432 2334443 567777777765
No 138
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.049 Score=55.02 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 143 AIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp HHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 47899999999999999887 7888878888888888654 7777776654
No 139
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.19 E-value=0.028 Score=54.12 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHhh------cCCeEEEecCCC-CChhhHHHHHHHHHHHHHCC-CEEEEecCC
Q psy318 172 PVANDIIS------KTWLICFDEFQV-TDIADAMILKRLFTELFQLG-VVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~------~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g-~~lV~TSN~ 220 (438)
.+|+.++. ++++|++||--. +|+..+..+..++..+.+.+ ..+|++|..
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 47888998 999999999887 79888888999999987664 456666554
No 140
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.18 E-value=0.021 Score=53.98 Aligned_cols=48 Identities=15% Similarity=0.322 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+. .|..+|++|..
T Consensus 149 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~ 197 (243)
T 1mv5_A 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHR 197 (243)
T ss_dssp HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 47899999999999999987 68777677788888876 67777777765
No 141
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.0068 Score=59.65 Aligned_cols=25 Identities=12% Similarity=-0.140 Sum_probs=21.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+..++||||+|+|||.++.++...+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 3478899999999999999998754
No 142
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.12 E-value=0.022 Score=57.00 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=24.4
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
...-+.|+|++|+|||+|+-.+...+... ..++-|
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vly 94 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAF 94 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEE
Confidence 34459999999999999977776555322 334544
No 143
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.10 E-value=0.052 Score=54.53 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+.. .|..+|++|..
T Consensus 137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46899999999999999887 788877778888888865 47777777654
No 144
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.10 E-value=0.009 Score=58.77 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+...-+.|+|++|+|||.|+-.+...+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 444568999999999999998887665
No 145
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.09 E-value=0.041 Score=52.32 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=34.1
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~ 86 (438)
.+.+-+.|--.+-|.|.+++..+.. .+.+++.+|+|+|||..+-+..
T Consensus 6 ~~~l~~~g~~~l~~~Q~~~i~~i~~-------------------------~~~~lv~~~TGsGKT~~~~~~~ 52 (337)
T 2z0m_A 6 EQAIREMGFKNFTEVQSKTIPLMLQ-------------------------GKNVVVRAKTGSGKTAAYAIPI 52 (337)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhc-------------------------CCCEEEEcCCCCcHHHHHHHHH
Confidence 3455556666789999998875431 2469999999999998665443
No 146
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.03 E-value=0.063 Score=57.76 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|++|.-
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47899999999999999887 79888888999999886 457766666654
No 147
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.99 E-value=0.086 Score=55.79 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=27.8
Q ss_pred HhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 177 ~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+....+.+++||||-+++.+..+ +..|...+..+++.++.
T Consensus 210 ~~~~~~~ilVDE~QD~~~~q~~l----l~~l~~~~~~l~~vGD~ 249 (647)
T 3lfu_A 210 YRERFTNILVDEFQDTNNIQYAW----IRLLAGDTGKVMIVGDD 249 (647)
T ss_dssp HHHHCCEEEESSGGGCCHHHHHH----HHHHHTTTCEEEEEECG
T ss_pred HHhhCCEEEEECcccCCHHHHHH----HHHHhcCCCEEEEEcCc
Confidence 33468999999999998776444 44455556667777663
No 148
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.97 E-value=0.018 Score=65.04 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=34.3
Q ss_pred hhcCCeEEEecCCC-CChhhHHHH-HHHHHHHHH-CCCEEEEecCC
Q psy318 178 ISKTWLICFDEFQV-TDIADAMIL-KRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 178 ~~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
+.+.+||++||... +|+.+...+ ..++..+.. .|..+|++|..
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 57889999999998 687766555 677888876 48888888887
No 149
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.96 E-value=0.019 Score=54.17 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=36.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHH---HHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFT---ELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn---~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++. .+ ..|..+|++|..
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~ 188 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHS 188 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSC
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecC
Confidence 47899999999999999987 78877676766663 23 347777777765
No 150
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.95 E-value=0.055 Score=51.97 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh-hc
Q psy318 13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC-ET 91 (438)
Q Consensus 13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l-~~ 91 (438)
...+.+-+.|--.+-+.|.+++..+-. ..+.+++.+|+|+|||..+-+..-.. ..
T Consensus 16 ~~~~~l~~~g~~~~~~~Q~~~i~~~~~------------------------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~ 71 (367)
T 1hv8_A 16 NILNAIRNKGFEKPTDIQMKVIPLFLN------------------------DEYNIVAQARTGSGKTASFAIPLIELVNE 71 (367)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHH------------------------TCSEEEEECCSSSSHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhC------------------------CCCCEEEECCCCChHHHHHHHHHHHHhcc
Confidence 334555566666899999999875521 12579999999999998765543332 22
Q ss_pred ccceeeec----hhhhHHHHHHHHHH
Q psy318 92 KQKQRVHF----NKFMLDVHAKIHEV 113 (438)
Q Consensus 92 ~~k~R~Hf----~~fm~~v~~~l~~~ 113 (438)
..+.++-+ ......+.+.+.+.
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 22334433 34445555554443
No 151
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.93 E-value=0.026 Score=57.04 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHC-CCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQL-GVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~-g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+... |..+|++|..
T Consensus 143 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (359)
T 2yyz_A 143 ALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 47899999999999999887 7888777788888888654 7777776654
No 152
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.91 E-value=0.0016 Score=65.70 Aligned_cols=28 Identities=21% Similarity=0.564 Sum_probs=23.5
Q ss_pred CCc-eEEEccCCCCHhHHHHHHHHhhhcc
Q psy318 65 PKG-LYIYGAVGGGKTMLMDIFYESCETK 92 (438)
Q Consensus 65 pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~ 92 (438)
+.| +.|.||+|+|||+|+.++...++..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 445 7899999999999999998887543
No 153
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.90 E-value=0.0055 Score=60.62 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+..+..+..++..+.. +..+|+.|.+
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~ 248 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHR 248 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCS
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcC
Confidence 47899999999999999987 788877778888888764 5666666665
No 154
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.89 E-value=0.029 Score=58.83 Aligned_cols=49 Identities=10% Similarity=-0.130 Sum_probs=35.7
Q ss_pred HHHHHhhcCCeEEEecCCCCChh-----hHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 173 VANDIISKTWLICFDEFQVTDIA-----DAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 173 va~~~~~~~~lLc~DEf~v~d~~-----da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
++..+..++++|++|=+..+|.. -...+..++..+.+.|+.+|++|...
T Consensus 364 ~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 364 KSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 35555678999999954445654 45568888998888898887777653
No 155
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.86 E-value=0.016 Score=56.44 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=21.4
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+...-+.|+|++|+|||+|+-.+...+
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334558999999999999998776653
No 156
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.84 E-value=0.054 Score=54.75 Aligned_cols=49 Identities=18% Similarity=0.060 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHH-HHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTEL-FQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l-~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+ .+.|..+|+.|..
T Consensus 148 alArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 148 ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47899999999999999876 7887766666655554 4568777777665
No 157
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.83 E-value=0.069 Score=56.52 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|++|.-
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46899999999999999987 79888888999999886 457666666543
No 158
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.83 E-value=0.013 Score=58.93 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=38.4
Q ss_pred cCCeEEEecCCCCChhhHHHHHHHHHHHH----------HCCCEEEEecCCChhhhhcCCCCc
Q psy318 180 KTWLICFDEFQVTDIADAMILKRLFTELF----------QLGVVVVATSNRAPDDLYKNGLQR 232 (438)
Q Consensus 180 ~~~lLc~DEf~v~d~~da~iL~~Lfn~l~----------~~g~~lV~TSN~~P~~L~~~gl~r 232 (438)
+--.|+|||++......+..|.++++.-. .-.+.+|+|||..+.++-..|..|
T Consensus 222 ~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr 284 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFR 284 (368)
T ss_dssp TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCcc
Confidence 34679999999999887777777666421 113469999999998876655444
No 159
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.82 E-value=0.05 Score=67.59 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=31.9
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhhhH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFML 104 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~fm~ 104 (438)
...|+.+.||+|+|||.++..++..+.. .-.++.+++=|.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~-~~v~~nc~e~ld 683 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGR-VVVVFNCDDSFD 683 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTC-CCEEEETTSSCC
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCC-cEEEEECCCCCC
Confidence 4579999999999999999999998853 356777766543
No 160
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.81 E-value=0.025 Score=60.91 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=42.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47899999999999999886 79988888999999998778777777765
No 161
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.81 E-value=0.02 Score=57.69 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=39.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+.. .|..+|++|..
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 47899999999999999887 788888888888888865 47777777654
No 162
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.78 E-value=0.042 Score=50.76 Aligned_cols=48 Identities=15% Similarity=-0.077 Sum_probs=28.9
Q ss_pred hcCCeEEEecCCCCCh----hhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 179 SKTWLICFDEFQVTDI----ADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 179 ~~~~lLc~DEf~v~d~----~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
.+..+|++||.|.... +....+..++..+...+.++++.|-..|.++.
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~ 225 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVE 225 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHH
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHH
Confidence 4578899999997521 22233445554444456667766666666554
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.78 E-value=0.03 Score=56.56 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=25.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
...-+.|+||+|+|||+|+-.+...+.. ...++.|
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~Vly 94 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAF 94 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEE
Confidence 3344899999999999999998877642 2344544
No 164
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.77 E-value=0.058 Score=52.91 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHH-HHHhhh-
Q psy318 13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDI-FYESCE- 90 (438)
Q Consensus 13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~-f~~~l~- 90 (438)
...+.+-..|--.+-+.|.+++..+.. ..++.+++.+|+|+|||...-+ +...+.
T Consensus 35 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~-----------------------~~~~~~lv~apTGsGKT~~~~~~~~~~~~~ 91 (412)
T 3fht_A 35 QLLQGVYAMGFNRPSKIQENALPLMLA-----------------------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEP 91 (412)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHS-----------------------SSCCCEEEECCTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhc-----------------------CCCCeEEEECCCCchHHHHHHHHHHHHhhh
Confidence 345566666777889999998864422 1246799999999999987433 333332
Q ss_pred cccceeeec----hhhhHHHHHHHHHH
Q psy318 91 TKQKQRVHF----NKFMLDVHAKIHEV 113 (438)
Q Consensus 91 ~~~k~R~Hf----~~fm~~v~~~l~~~ 113 (438)
...+.++-+ .+...++++.+.++
T Consensus 92 ~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 92 ANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 222224433 34555555555544
No 165
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.76 E-value=0.029 Score=54.05 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.. .+|++|..
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd 184 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHE 184 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESC
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcC
Confidence 47899999999999999887 688777777777776633 55555543
No 166
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.73 E-value=0.049 Score=62.09 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=38.5
Q ss_pred HHHHHhhcCCeEEEecCCC-CChhhH-HHHHHHHHHHHHC-CCEEEEecCCC
Q psy318 173 VANDIISKTWLICFDEFQV-TDIADA-MILKRLFTELFQL-GVVVVATSNRA 221 (438)
Q Consensus 173 va~~~~~~~~lLc~DEf~v-~d~~da-~iL~~Lfn~l~~~-g~~lV~TSN~~ 221 (438)
++..++.+..||++||+.. +|..+. .++..++..+.+. |..+|++|...
T Consensus 861 ~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~ 912 (1022)
T 2o8b_B 861 SILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH 912 (1022)
T ss_dssp HHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH
T ss_pred HHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 3566678899999999998 677663 4577889999876 88888888774
No 167
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.025 Score=60.03 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....++.++..+.+ |..+|+.|..
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHd 196 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD 196 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSC
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence 47899999999999999876 798888889999998865 7777777765
No 168
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.61 E-value=0.1 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.3
Q ss_pred ceEEEccCCCCHhHHHHHHHHhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
=+.|.|++|+|||+++..+ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 3789999999999999999 554
No 169
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.57 E-value=0.031 Score=59.93 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=30.7
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhc---ccceeeechhhhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCET---KQKQRVHFNKFMLDVHAKIH 111 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~---~~k~R~Hf~~fm~~v~~~l~ 111 (438)
+-++|.|++|||||+++..+...+.. ..+.++..-......-.+|.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 56999999999999998887766631 23346665444444444443
No 170
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.54 E-value=0.18 Score=45.65 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=30.7
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHH
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTML 81 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~L 81 (438)
.+.+...|--.+-+.|.+++..+.. .+.+++.+|+|+|||..
T Consensus 26 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 26 LRGVFGYGFEEPSAIQQRAIMPIIE-------------------------GHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHH
T ss_pred HHHHHHCCCCCCcHHHHHHHHHHhc-------------------------CCCEEEECCCCCcHHHH
Confidence 3445555655789999988875321 14699999999999986
No 171
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.53 E-value=0.021 Score=53.54 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHH-HHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRL-FTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~L-fn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..+ +..+. .|..+|++|..
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~ 189 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSK 189 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCC
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCC
Confidence 47899999999999999987 688776666664 33333 46677777754
No 172
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.52 E-value=0.044 Score=56.95 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.7
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
..|+|++|+||||+|||+|+.++...+..
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999988853
No 173
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.51 E-value=0.052 Score=61.21 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=34.5
Q ss_pred hhcCCeEEEecCCC-CChhhHHHHH-HHHHHHHH-CCCEEEEecCC
Q psy318 178 ISKTWLICFDEFQV-TDIADAMILK-RLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 178 ~~~~~lLc~DEf~v-~d~~da~iL~-~Lfn~l~~-~g~~lV~TSN~ 220 (438)
+.+..||++||... +|+.+...+. .++..+.. .|..+|++|..
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 57899999999998 7887766665 78888865 58888888876
No 174
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.49 E-value=0.046 Score=58.13 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=39.4
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+..+..+.+++..+.+ |..+|+.|.+
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 538 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHR 538 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecC
Confidence 47899999999999999987 688877778888888754 7777777765
No 175
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.45 E-value=0.066 Score=54.07 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
.+...-+.|+|++|+|||+|+-.+...+... ..++.|-
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi 108 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFI 108 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEE
Confidence 3445569999999999999987776655322 3355553
No 176
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.45 E-value=0.053 Score=64.73 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=28.8
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
.+.+..+.|+|++|+|||+|+-.|...... ...++.|-.+
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~-~G~~vlYI~t 70 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDA 70 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh-CCCceEEEEe
Confidence 456678999999999999999988665432 2345555443
No 177
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.42 E-value=0.045 Score=56.30 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.5
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
....=+.|.|+||+|||.|+-.+...+....+.++-|..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 334458999999999999988887766433344565543
No 178
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.37 E-value=0.044 Score=54.67 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.3
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+...=+.|+|++|+|||.|+..+...+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334448899999999999999998766
No 179
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.34 E-value=0.11 Score=54.50 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=34.1
Q ss_pred hcCCeEEEecCCCC------ChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQVT------DIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v~------d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+.++|+|||.-.. |+.....++.++..+.+.|+.+|+++...
T Consensus 137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 56899999999763 34445678899999988898888888774
No 180
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.34 E-value=0.053 Score=54.65 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=24.8
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeee
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVH 98 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~H 98 (438)
-+.|.||+|+|||+|+.++...++...+.++.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~ 169 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQTKSYHII 169 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEE
Confidence 47899999999999999998877533234453
No 181
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.18 E-value=0.1 Score=55.56 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=40.0
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+..+..+.+++..+.. |..+|+.|.+
T Consensus 493 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 541 (595)
T 2yl4_A 493 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHR 541 (595)
T ss_dssp HHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCC
T ss_pred HHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 47899999999999999987 688888888888888866 6677777765
No 182
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.18 E-value=0.042 Score=54.53 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.0
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
...-+.|+|++|+|||.|+-.+...+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33448999999999999998877654
No 183
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.14 E-value=0.089 Score=51.21 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318 13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD 83 (438)
Q Consensus 13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd 83 (438)
...+.+-..|--.+-+.|.+++..+.. .+.+++.+|+|+|||..+-
T Consensus 31 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------------------------~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 31 NLLRGVFGYGFEEPSAIQQRAIMPIIE-------------------------GHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHH-------------------------TCCEEECCCSSHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCChHHHHHH
Confidence 345555566766899999998875432 1458999999999998643
No 184
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.12 E-value=0.027 Score=60.16 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=40.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+..+..+.+++..+. .|..+|+.|.+.
T Consensus 501 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l 550 (598)
T 3qf4_B 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRL 550 (598)
T ss_dssp HHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence 47899999999999999887 68887777888888875 577777777763
No 185
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.10 E-value=0.16 Score=46.86 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=29.0
Q ss_pred hcCCeEEEecCCCC-ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 179 SKTWLICFDEFQVT-DIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 179 ~~~~lLc~DEf~v~-d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
...++|+|||.+.. +.+....+..++..+ ..+.++|+.|-..|.++.
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~-~~~~~~i~~SAT~~~~~~ 219 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKL-NTSIQVVLLSATMPTDVL 219 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHS-CTTCEEEEECSSCCHHHH
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhC-CCCCeEEEEEEecCHHHH
Confidence 45799999999963 323333445555544 345677777777666543
No 186
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.063 Score=57.84 Aligned_cols=49 Identities=8% Similarity=0.067 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHH-HCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELF-QLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~-~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+. +.|..+|+.|.-
T Consensus 477 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd 527 (608)
T 3j16_B 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527 (608)
T ss_dssp HHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 46889999999999999887 79888888889998885 457666655543
No 187
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.04 E-value=0.17 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.++-+.|+|+.|.|||.|+..+++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDH 171 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhch
Confidence 35679999999999999999998754
No 188
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.02 E-value=0.17 Score=53.63 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+..+..+.+++..+.+ |..+|+.|.+.
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL 539 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCG
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccH
Confidence 47899999999999999987 688888888888888864 77777777663
No 189
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.96 E-value=0.096 Score=59.47 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....|.+++.. .|..+|++|..
T Consensus 558 aLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHd 604 (986)
T 2iw3_A 558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHD 604 (986)
T ss_dssp HHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSC
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECC
Confidence 47899999999999999887 688877777777776 57777777765
No 190
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.94 E-value=0.13 Score=54.06 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHH
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.++-+-|+|..|.|||.|+..+|+
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999997
No 191
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.90 E-value=0.093 Score=55.60 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHH-CCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQ-LGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.. .|..+|+.|.-
T Consensus 395 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47899999999999999887 798888888999998865 56666655543
No 192
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=94.79 E-value=0.089 Score=51.01 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHH
Q psy318 13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTML 81 (438)
Q Consensus 13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~L 81 (438)
...+.+...|--.+.+.|.+++..+-. ..++.+++.+++|+|||..
T Consensus 102 ~l~~~l~~~g~~~pt~iQ~~ai~~il~-----------------------~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 102 QLLQGVYAMGFNRPSKIQENALPLMLA-----------------------EPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHTS-----------------------SSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHc-----------------------CCCCeEEEECCCCCCccHH
Confidence 345566666777789999988753311 1246899999999999975
No 193
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.76 E-value=0.036 Score=59.10 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+..+..+.+.+..+. +|..+|+.|.+
T Consensus 489 ~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 537 (587)
T 3qf4_A 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQK 537 (587)
T ss_dssp HHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESC
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecC
Confidence 47899999999999999987 68877777888887764 57777777665
No 194
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.74 E-value=0.16 Score=59.21 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+++++++|+|||.-. +|...+..+.+.+..+.. |+.+|+-+++
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHr 612 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHR 612 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSC
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEccc
Confidence 47999999999999999886 676666777777777764 5555555555
No 195
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.72 E-value=0.046 Score=58.08 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
.+|+.++.++++|++||--. +|+..+..+.+++..+. .+..+|+.|.+.
T Consensus 487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l 536 (578)
T 4a82_A 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRL 536 (578)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSG
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence 47899999999999999887 68877777888888775 456666666663
No 196
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.64 E-value=0.14 Score=57.01 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=33.4
Q ss_pred HhhcCCeEEEecCCC-CChhhHHH-HHHHHHHHHH-CCCEEEEecCCC
Q psy318 177 IISKTWLICFDEFQV-TDIADAMI-LKRLFTELFQ-LGVVVVATSNRA 221 (438)
Q Consensus 177 ~~~~~~lLc~DEf~v-~d~~da~i-L~~Lfn~l~~-~g~~lV~TSN~~ 221 (438)
.+.+..+|++||... +|+.+... +..++..+.+ .|..+|++|...
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~ 730 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 730 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence 357899999999976 55544433 4678888887 488888888774
No 197
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.63 E-value=0.02 Score=50.10 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++-++|.|++|+|||+++.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35699999999999999999988774
No 198
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.61 E-value=0.025 Score=49.86 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++-|+|.|++|+|||+++.++...+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999987763
No 199
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.61 E-value=0.066 Score=57.49 Aligned_cols=45 Identities=22% Similarity=0.123 Sum_probs=29.0
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIHE 112 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~~ 112 (438)
=.+|+||||||||+.+-.+...+- .++.|+-. |.....+.++|+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~-~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAV-KQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEcCchHHHHHHHHHHHh
Confidence 368999999999986655544442 22345533 6667777666654
No 200
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.58 E-value=0.84 Score=52.59 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318 12 SKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD 83 (438)
Q Consensus 12 ~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd 83 (438)
-..++...+.-.+.+-|.|.+++..+-. .+.. ..|..+++.|++|+|||..+-
T Consensus 590 ~~~~~~~~~~f~~~~t~~Q~~ai~~il~---~~~~----------------g~p~d~ll~~~TGsGKT~val 642 (1151)
T 2eyq_A 590 REQYQLFCDSFPFETTPDQAQAINAVLS---DMCQ----------------PLAMDRLVCGDVGFGKTEVAM 642 (1151)
T ss_dssp HHHHHHHHHTCCSCCCHHHHHHHHHHHH---HHHS----------------SSCCEEEEECCCCTTTHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH---HHhc----------------CCcCcEEEECCCCCCHHHHHH
Confidence 4556777777788899999998876544 2221 235689999999999997754
No 201
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.55 E-value=0.022 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++.++|.|++|+|||++...+...+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999988763
No 202
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.51 E-value=0.023 Score=49.46 Aligned_cols=25 Identities=16% Similarity=0.497 Sum_probs=22.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+-+.|.|++|+|||+|+.++...+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999988764
No 203
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.49 E-value=0.11 Score=53.17 Aligned_cols=37 Identities=16% Similarity=0.028 Sum_probs=26.6
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
.=+.|.|+||+|||.|+--+...+....+.++-|-.+
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3488999999999999887776665433455666444
No 204
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.39 E-value=0.024 Score=48.96 Aligned_cols=24 Identities=8% Similarity=-0.045 Sum_probs=21.3
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
=|.|.|++|+|||+++..+...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987763
No 205
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.38 E-value=0.11 Score=51.57 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=26.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
.+-+.|.|++|+|||+|+.++...++. ....+.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i 204 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISI 204 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEE
Confidence 356899999999999999999887753 3344544
No 206
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.37 Score=54.84 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=43.0
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeee
Q psy318 19 LSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVH 98 (438)
Q Consensus 19 v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~H 98 (438)
...-.+.+++.|.+++..+.. .+.+++.+|+|+|||...-+..... ...+.|+-
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~-------------------------g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL 133 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDR-------------------------GESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVI 133 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHH-------------------------TCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEE
T ss_pred HHhCCCCCCHHHHHHHHHHHc-------------------------CCCEEEECCCCCChHHHHHHHHHHH-hccCCeEE
Confidence 345567899999999987532 1469999999999999764432222 12344555
Q ss_pred c----hhhhHHHHHHHHH
Q psy318 99 F----NKFMLDVHAKIHE 112 (438)
Q Consensus 99 f----~~fm~~v~~~l~~ 112 (438)
| -..+.+.++.+.+
T Consensus 134 ~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 134 YTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EECChHHHHHHHHHHHHH
Confidence 4 2344444444443
No 207
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.28 E-value=0.09 Score=53.76 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=20.9
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+...=+.|+|++|+|||+|+..+.-.+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 344558899999999999999765333
No 208
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.23 E-value=0.031 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
++-++|.|++|+|||++..++...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999876
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.03 E-value=0.034 Score=50.17 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.8
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..++-++|.|++|+|||+|+.++...+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999988773
No 210
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.01 E-value=0.41 Score=54.98 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=44.1
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceee
Q psy318 18 KLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRV 97 (438)
Q Consensus 18 ~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~ 97 (438)
+...+.+.+++.|.+|+..+.. .+.+++.|++|+|||...-+.....- ..+.|+
T Consensus 177 ~~~~~~f~ltp~Q~~AI~~i~~-------------------------g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rv 230 (1108)
T 3l9o_A 177 EARTYPFTLDPFQDTAISCIDR-------------------------GESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRV 230 (1108)
T ss_dssp CSSCCSSCCCHHHHHHHHHHTT-------------------------TCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEE
T ss_pred HHHhCCCCCCHHHHHHHHHHHc-------------------------CCCEEEECCCCCChHHHHHHHHHHHH-hcCCeE
Confidence 3556778899999999886511 25799999999999987654433221 234455
Q ss_pred ec----hhhhHHHHHHHHH
Q psy318 98 HF----NKFMLDVHAKIHE 112 (438)
Q Consensus 98 Hf----~~fm~~v~~~l~~ 112 (438)
-| -..+..+++.+.+
T Consensus 231 lvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 231 IYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp EEEESSHHHHHHHHHHHHH
T ss_pred EEEcCcHHHHHHHHHHHHH
Confidence 54 2344444444444
No 211
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.98 E-value=1.3 Score=47.74 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH
Q psy318 13 KQYYEKLSNNEI-QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 13 ~~Y~~~v~~g~l-~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~ 86 (438)
....+.+...++ .+.+.|.+++..+ + ...+.+++.||+|+|||..+-++.
T Consensus 17 ~~~~~~l~~~g~~~l~~~Q~~~i~~~------~------------------~~~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 17 SNVIEIIKKRGIKKLNPPQTEAVKKG------L------------------LEGNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp HHHHHHHHTTSCCBCCHHHHHHHHTT------T------------------TTTCCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHH------h------------------cCCCcEEEEcCCCCcHHHHHHHHH
Confidence 345555666666 7899999987631 0 113679999999999999875553
No 212
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.96 E-value=0.089 Score=56.43 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=30.3
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIH 111 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~ 111 (438)
-.+|+||||||||+++-.+...+....+.|+-. |.....+.+++.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 478999999999998877766654323456654 455555555554
No 213
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.89 E-value=0.069 Score=46.76 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.4
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.=+.|.|++|+|||+++..+...+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999988775
No 214
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.82 E-value=0.037 Score=48.83 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|+-++|.|++|+|||+++..+...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356689999999999999999988763
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.75 E-value=0.042 Score=48.88 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++=+.|.||+|+|||.|++++....+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35589999999999999999987653
No 216
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.75 E-value=0.46 Score=55.27 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=38.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|...+..+...+..+. .|+.+|+.|.+
T Consensus 536 aiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~ 584 (1284)
T 3g5u_A 536 AIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHR 584 (1284)
T ss_dssp HHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSC
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 57899999999999999887 68776777777777665 57777777766
No 217
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.71 E-value=0.19 Score=55.58 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=28.2
Q ss_pred hhcCCeEEEecCCC-CChhhHHHH-HHHHHHHHHCCCEEEEecCC
Q psy318 178 ISKTWLICFDEFQV-TDIADAMIL-KRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 178 ~~~~~lLc~DEf~v-~d~~da~iL-~~Lfn~l~~~g~~lV~TSN~ 220 (438)
+.+.++|++||... +..-|...+ ..+++.+.+.|..+|++|..
T Consensus 653 a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~ 697 (765)
T 1ewq_A 653 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY 697 (765)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 67899999999965 333332222 34555555567788888876
No 218
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.70 E-value=0.05 Score=47.70 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=22.0
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
-|.|.|++|+|||+++..+...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998885
No 219
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.62 E-value=1.6 Score=45.21 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=31.0
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM 82 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm 82 (438)
.+.+...|--.+-|.|.+++..+-. ...+.+++.+|+|+|||...
T Consensus 84 ~~~l~~~g~~~~~~~Q~~~i~~~l~-----------------------~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 84 HKAITRMEFPGLTPVQQKTIKPILS-----------------------SEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHTTCCSSCCHHHHHHHHHHHS-----------------------SSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhc-----------------------CCCCeEEEECCCCCCccHHH
Confidence 3444445555589999988764320 12468999999999999743
No 220
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.62 E-value=0.56 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.2
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
+-+.|.|++|+|||+++-++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999997776643
No 221
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.58 E-value=0.094 Score=53.50 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|......+..++..+. .+..+|+++..
T Consensus 165 alARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd 213 (390)
T 3gd7_A 165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEAR 213 (390)
T ss_dssp HHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSS
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcC
Confidence 57899999999999999876 78776666777776653 45666666665
No 222
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.57 E-value=0.12 Score=55.87 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=42.7
Q ss_pred HHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH-Hhhhc
Q psy318 14 QYYEKLSNNEI-QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY-ESCET 91 (438)
Q Consensus 14 ~Y~~~v~~g~l-~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~-~~l~~ 91 (438)
.+.+.+...++ .+.+.|.+++..+ + ...+.+++.||+|+|||..+-+.. ..+..
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~~i~~~------~------------------~~~~~~lv~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 11 RIKSTLKERGIESFYPPQAEALKSG------I------------------LEGKNALISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp HHHHHHHHTTCCBCCHHHHHHHTTT------G------------------GGTCEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHH------h------------------cCCCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 34445554555 7899999887630 0 113679999999999998774443 33321
Q ss_pred ccceeeec----hhhhHHHHHHH
Q psy318 92 KQKQRVHF----NKFMLDVHAKI 110 (438)
Q Consensus 92 ~~k~R~Hf----~~fm~~v~~~l 110 (438)
.+.++-| -..+.++.+++
T Consensus 67 -~~~~~l~i~P~raLa~q~~~~~ 88 (720)
T 2zj8_A 67 -QGGKAVYIVPLKALAEEKFQEF 88 (720)
T ss_dssp -HCSEEEEECSSGGGHHHHHHHT
T ss_pred -CCCEEEEEcCcHHHHHHHHHHH
Confidence 1234433 34555555555
No 223
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.49 E-value=0.05 Score=47.59 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
++-+.|.|++|+|||+|+.++...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3458999999999999999997765
No 224
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.46 E-value=0.041 Score=47.75 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
+=+.|.|++|+|||+++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999976
No 225
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.42 E-value=0.11 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=19.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.+-..|.|++|+|||+++....+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 35578999999999999977654
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.40 E-value=0.052 Score=49.14 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.++-++|.|++|+|||.|+..+...++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456799999999999999999988764
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.35 E-value=0.051 Score=48.55 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.7
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+-+.|.||.|+|||+|+.++...++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4478999999999999999987664
No 228
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.31 E-value=0.36 Score=49.35 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=29.1
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHH-CCCEEEEecCCChhhh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQ-LGVVVVATSNRAPDDL 225 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~P~~L 225 (438)
+.+..+|++||.|..+..... ...++..+.. ....+|+.|-.+|...
T Consensus 97 ~~~l~~vViDEah~~~~~~~~-~~~~~~~~~~~~~~~~l~~SAT~~~~~ 144 (440)
T 1yks_A 97 VVNWEVIIMDEAHFLDPASIA-ARGWAAHRARANESATILMTATPPGTS 144 (440)
T ss_dssp CCCCSEEEETTTTCCSHHHHH-HHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred ccCccEEEEECccccCcchHH-HHHHHHHHhccCCceEEEEeCCCCchh
Confidence 467899999999998644322 2233333333 4566777666665544
No 229
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.31 E-value=0.051 Score=48.82 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=22.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
++=|.|.|++|+|||+|+..+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999998776
No 230
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.31 E-value=0.045 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHHh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
++-+.|.|++|+|||+|+.++...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 445899999999999999999765
No 231
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.30 E-value=0.047 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.|.|++|+|||+++..+...+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987663
No 232
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.29 E-value=0.054 Score=48.83 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.7
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.++=+.|.|++|+|||.|+.++...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45569999999999999999998766
No 233
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.29 E-value=0.049 Score=47.21 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=22.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+-+.|.|++|+|||+++..+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999988764
No 234
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.28 E-value=0.26 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=22.6
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..++-+-|+|+.|.|||.|+..+|+..
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~ 171 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDH 171 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcCh
Confidence 345668899999999999999988764
No 235
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.27 E-value=0.055 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.=+.|.||+|+|||+|+.++...+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 447899999999999999998765
No 236
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.22 E-value=0.04 Score=48.26 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=18.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.-++|.|++|+|||+++..+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45689999999999999999987764
No 237
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.15 E-value=0.053 Score=47.61 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.-|.|.|++|||||+++..+...+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999999999999987663
No 238
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.06 E-value=0.059 Score=46.88 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+-++|.|++|||||.+..++...+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999988764
No 239
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.05 E-value=0.052 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.1
Q ss_pred eEEEccCCCCHhHHHHHHHHhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l 89 (438)
|.|.|++|+|||+++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997765
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.04 E-value=0.058 Score=48.95 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=21.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++-+.|.||+|+|||.|+.++....+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999976553
No 241
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.03 E-value=0.07 Score=47.87 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.0
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|.-|.|.|++|+|||+++..+...+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345599999999999999999988764
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.01 E-value=0.056 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+-++|.|++|+|||++..++...+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999988774
No 243
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.01 E-value=0.38 Score=49.74 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=27.9
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
.|+=+.+.|++|+|||+++..+...+. +.+.++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 356789999999999999999988885 34556655
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.99 E-value=0.057 Score=47.48 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.3
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.-+.|.|++|||||+++..+...+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999998766
No 245
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.97 E-value=0.062 Score=48.43 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+.=+.|.|++|+|||+|+.++...+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455689999999999999999988886
No 246
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.95 E-value=0.065 Score=47.30 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++-+.|.|++|||||+++..+...+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999987763
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.90 E-value=0.063 Score=47.85 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.9
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+.=+.|.|++|+|||+|+.++...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4458899999999999999998766
No 248
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.90 E-value=0.062 Score=47.71 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=26.9
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
.=+.|.||.|+|||+|+.++...++ ..-.+.+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~--~~G~V~~~g~ 68 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG--HQGNVKSPTY 68 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT--CCSCCCCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC--CCCeEEECCE
Confidence 3488999999999999999988874 3345555543
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.89 E-value=0.064 Score=48.94 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++=+.|.||+|+|||.|+.++...++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44589999999999999999987764
No 250
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.89 E-value=0.59 Score=45.58 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=25.7
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
...=+.|.|+||+|||.|+--+...+... ..++-|-.+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEEC
Confidence 33448999999999998877776554332 245666444
No 251
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.88 E-value=0.059 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.-+.|.|++|||||+|+.++...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999998765
No 252
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.85 E-value=0.061 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=21.1
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.|.|++|+|||+++.++...+.
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEECCCccCHHHHHHHHHHhcC
Confidence 78999999999999999988774
No 253
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.83 E-value=0.061 Score=47.93 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.8
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
+=|.|.|++|+|||+++..+...+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 34899999999999999999988753
No 254
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.79 E-value=0.07 Score=54.16 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=24.8
Q ss_pred cCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 61 KVKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 61 ~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..+.++.+.|+||+|+|||+|+.++...+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34567889999999999999999998754
No 255
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.78 E-value=0.07 Score=48.73 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|.-++|.|++|+|||+++..+...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346699999999999999999988774
No 256
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.75 E-value=0.072 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
-|.|.|++|+|||++...+...+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999988764
No 257
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.74 E-value=0.063 Score=47.03 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++-+.|.|++|||||+++..+...+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999987663
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.73 E-value=0.065 Score=49.09 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+.|.|.||+|+|||.|++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 469999999999999999987654
No 259
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.67 E-value=0.067 Score=46.98 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.|.|++|+|||+++..+...+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988763
No 260
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.67 E-value=0.067 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.0
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.|.|++|+|||+++..+.+.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998873
No 261
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.57 E-value=0.18 Score=48.72 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=23.4
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|.-++|.|++|+|||+|+..+...++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987663
No 262
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.56 E-value=0.072 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.0
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.|.|++|+|||+++..+...+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 263
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.56 E-value=0.073 Score=47.10 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++=+.|.|++|+|||+++..+...+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999988764
No 264
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.55 E-value=0.078 Score=49.38 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=22.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.|.=+.|.|++|+|||+|+.++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998665
No 265
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=92.52 E-value=0.28 Score=55.67 Aligned_cols=67 Identities=12% Similarity=0.235 Sum_probs=42.5
Q ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 20 SNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 20 ~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
..-.+.+|+.|.+++..+.. .+.+++.|++|+|||...-.....+. ..+.++-|
T Consensus 34 ~~~~f~l~~~Q~~aI~~il~-------------------------g~~vlv~apTGsGKTlv~~~~i~~~~-~~g~~vlv 87 (997)
T 4a4z_A 34 RSWPFELDTFQKEAVYHLEQ-------------------------GDSVFVAAHTSAGKTVVAEYAIAMAH-RNMTKTIY 87 (997)
T ss_dssp CCCSSCCCHHHHHHHHHHHT-------------------------TCEEEEECCTTSCSHHHHHHHHHHHH-HTTCEEEE
T ss_pred HhCCCCCCHHHHHHHHHHHc-------------------------CCCEEEEECCCCcHHHHHHHHHHHHH-hcCCeEEE
Confidence 34457799999998875422 25799999999999975443333221 12233333
Q ss_pred ----hhhhHHHHHHHHH
Q psy318 100 ----NKFMLDVHAKIHE 112 (438)
Q Consensus 100 ----~~fm~~v~~~l~~ 112 (438)
-..+.++++.+.+
T Consensus 88 l~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 88 TSPIKALSNQKFRDFKE 104 (997)
T ss_dssp EESCGGGHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHHHHH
Confidence 4567777666654
No 266
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.50 E-value=0.44 Score=48.47 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=29.9
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
+.+..+|++||.|..+......+..+.......+..+|+.|-.+|..+.
T Consensus 91 ~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 91 VPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred ccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh
Confidence 4578999999999986433232333333323345677777777665543
No 267
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=92.43 E-value=0.073 Score=55.30 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=27.9
Q ss_pred CCceEEEccCCCCHhHHHHH-HHHhhh-cccceeeec----hhhhHHHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDI-FYESCE-TKQKQRVHF----NKFMLDVHAKIHE 112 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~-f~~~l~-~~~k~R~Hf----~~fm~~v~~~l~~ 112 (438)
++.++|.+++|+|||...-+ +...+. ...+.|+-| ...+.++.+.+.+
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~ 211 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTE 211 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHH
Confidence 47899999999999986433 344442 222335544 3344444444443
No 268
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.42 E-value=0.072 Score=46.53 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.3
Q ss_pred ceEEEccCCCCHhHHHHHHHHhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
=..|+|+.|+|||.|++++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999997766
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.40 E-value=0.12 Score=45.74 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
.+.-++|.|.+|+|||+++..+...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3456899999999999999999988853
No 270
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.31 E-value=0.085 Score=47.21 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=22.4
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.++-|.|.|++|||||+++..+...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999998765
No 271
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.24 E-value=0.089 Score=47.11 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.8
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++=|.|.|++|+|||+++.++...+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45589999999999999999988764
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.24 E-value=0.093 Score=46.99 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=22.9
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.=|.|.|++|+|||+++..+...+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45599999999999999999988774
No 273
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.23 E-value=0.11 Score=47.08 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=28.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhc--ccceeeechhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCET--KQKQRVHFNKF 102 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~--~~k~R~Hf~~f 102 (438)
+.=+-|.|++|+|||+|+.++...++. +....++...|
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 345789999999999999999887752 12455666554
No 274
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.23 E-value=0.095 Score=48.47 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=23.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+.-|.|.|++|+|||+++.++...+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345699999999999999999988774
No 275
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.18 E-value=0.094 Score=47.79 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.-+.|.|++|+|||+++..+...+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999988764
No 276
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=92.17 E-value=0.57 Score=47.83 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=30.3
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
+.+.++|+|||.|..+......+..+.......+..+|+.|-.+|....
T Consensus 108 l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~ 156 (451)
T 2jlq_A 108 VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD 156 (451)
T ss_dssp CCCCSEEEEETTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred ccCCCEEEEeCCccCCcchHHHHHHHHHhhcCCCceEEEEccCCCccch
Confidence 4578999999999886543333322333333345677777777666443
No 277
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.14 E-value=0.082 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=21.0
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
=..|+|+.|+|||.|++++.-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 357999999999999999987764
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.12 E-value=0.099 Score=48.40 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.++-+.|.||+|+|||.|++++....+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356789999999999999999987654
No 279
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.12 E-value=0.18 Score=45.49 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.=+-|.|++|+|||+|+.++...++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999988764
No 280
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.10 E-value=0.2 Score=45.84 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.0
Q ss_pred eEEEccCCCCHhHHHHHHHHh
Q psy318 68 LYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~ 88 (438)
++++|++|||||.++-.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999998877644
No 281
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.99 E-value=1 Score=52.39 Aligned_cols=48 Identities=13% Similarity=0.287 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+++++++|++||--. +|...+..+.+++..+. .|..+|+.|.+
T Consensus 1181 ~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~ 1229 (1284)
T 3g5u_A 1181 AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHR 1229 (1284)
T ss_dssp HHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecC
Confidence 57899999999999999987 68877777888887653 46555555554
No 282
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.98 E-value=0.095 Score=48.86 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.++=+.|.||.|+|||+|+.++....+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345688999999999999999987664
No 283
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.94 E-value=0.12 Score=45.88 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.......+.+.+-+.|.+++..+-. .+.++|.+|+|+|||.++-+.....
T Consensus 23 ~~~~~~~~~~~l~~~Q~~~i~~~~~-------------------------~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 23 AARASPEPELQLRPYQMEVAQPALE-------------------------GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp HHHTCCSCCCCCCHHHHHHHHHHHT-------------------------TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hcccCccCCCCchHHHHHHHHHHhc-------------------------CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 3344455678889999998874321 1469999999999999887665443
No 284
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.91 E-value=0.21 Score=55.47 Aligned_cols=46 Identities=24% Similarity=0.235 Sum_probs=29.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIHE 112 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~~ 112 (438)
-++|.||||||||+++-.+...+....+.|+-. |.....+.+++.+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 478999999999988776655553212345543 4555566555544
No 285
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.84 E-value=0.091 Score=46.54 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.4
Q ss_pred eEEEccCCCCHhHHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~ 87 (438)
+.|.|++|+|||+|+.++..
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999965
No 286
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.80 E-value=0.087 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.8
Q ss_pred ceEEEccCCCCHhHHHHHHHHhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
-+.|.|++|+|||+++.++.. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 378999999999999999987 5
No 287
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.79 E-value=0.096 Score=48.06 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.-+.|.|++|+|||+++..+...+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999987663
No 288
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.79 E-value=0.76 Score=49.23 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..++|.|.+|+|||.++..+..++
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999887766
No 289
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.74 E-value=0.65 Score=48.05 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=27.1
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
...-+.|.|+||+|||.|+--+...+....+.++-|-.+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 334488999999999999877766664333455666444
No 290
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.72 E-value=0.11 Score=46.31 Aligned_cols=25 Identities=24% Similarity=0.060 Sum_probs=22.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
++=|.|.|++|+|||+++..+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999998876
No 291
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=91.66 E-value=0.71 Score=49.56 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=34.3
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDL 225 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L 225 (438)
+.+.++|+|||.|..+......+..+...+.....++|+.|-.+|...
T Consensus 275 l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~ 322 (618)
T 2whx_A 275 VPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGST 322 (618)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCC
T ss_pred ccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEECCCchhh
Confidence 467899999999998765544555566665545677777777776654
No 292
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.59 E-value=0.27 Score=54.56 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=29.9
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIH 111 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~ 111 (438)
-.+|+||||||||+++-.+...+....+.|+-. |.....+.+++.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 478999999999998887766664323456644 445555555443
No 293
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.58 E-value=0.083 Score=49.72 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=23.8
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..|.-++|.|++|+|||+++..+...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456799999999999999999987764
No 294
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.57 E-value=0.092 Score=47.17 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.0
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|++|+|||+++.++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999965
No 295
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.49 E-value=0.39 Score=42.53 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=33.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHH
Q psy318 14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDI 84 (438)
Q Consensus 14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~ 84 (438)
..+.+-..|--.+-+.|.+++..+-. .+.+++.+|+|+|||...-+
T Consensus 12 l~~~l~~~~~~~~~~~Q~~~i~~~~~-------------------------~~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 12 ILEALHGRGLTTPTPIQAAALPLALE-------------------------GKDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcC-------------------------CCCEEEECCCCChHHHHHHH
Confidence 34455556666889999998875321 14699999999999986433
No 296
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.48 E-value=0.11 Score=46.76 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.4
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.=+-|.|+.|+|||+|+.++...+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3477999999999999999987654
No 297
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=91.40 E-value=0.51 Score=45.57 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH
Q psy318 13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF 85 (438)
Q Consensus 13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f 85 (438)
...+.+...|--.+.|.|.+++..+-. ..++.+++.+|+|+|||...-+.
T Consensus 15 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~-----------------------~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 15 ELLKGIYAMKFQKPSKIQERALPLLLH-----------------------NPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHC-----------------------SSCCCEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHc-----------------------CCCCeEEEECCCCCcHHHHHHHH
Confidence 556677778888899999998865421 12468999999999999865443
No 298
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.28 E-value=0.73 Score=45.19 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=26.7
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
.|+=+.|.|++|+|||+++..+...+.. ...++.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~l 137 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVL 137 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEE
Confidence 3455889999999999999999887753 3445554
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.27 E-value=0.11 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=21.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+.=+.|.|++|+|||+|+.++...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3448899999999999999997755
No 300
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.26 E-value=0.13 Score=48.24 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
...|+-|+|.||||+|||+++..+...+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34567899999999999999999987663
No 301
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.17 E-value=0.13 Score=48.19 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=23.1
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|.-|.|.|++|+|||+++..+...+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355699999999999999999987663
No 302
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.15 E-value=0.68 Score=47.67 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=25.8
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhhcccceeeechhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKF 102 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~f 102 (438)
.=+.|.|+||+|||.|+--+...+... +.++-|-.+
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl 233 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL 233 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC
Confidence 348999999999998877766655433 456766544
No 303
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.14 E-value=0.16 Score=48.10 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.7
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.=|+|.|++|+|||+++..+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34589999999999999999988764
No 304
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.08 E-value=0.14 Score=45.03 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.-+.|.|++|+|||+++.++...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999988774
No 305
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.01 E-value=0.13 Score=47.31 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.++=+.|.||.|+|||.|++++....+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345588999999999999999977553
No 306
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.00 E-value=0.15 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=17.7
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-.+++|+||+|||++|-.+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999998665433
No 307
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.98 E-value=0.13 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.3
Q ss_pred eEEEccCCCCHhHHHHHHHHhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+.|.|++|+|||+++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998766
No 308
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.97 E-value=0.13 Score=46.90 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=29.5
Q ss_pred hcCCeEEEecCCCC-----Chh-hHHHHHHHHHHHHHCCCEEEEecCCC
Q psy318 179 SKTWLICFDEFQVT-----DIA-DAMILKRLFTELFQLGVVVVATSNRA 221 (438)
Q Consensus 179 ~~~~lLc~DEf~v~-----d~~-da~iL~~Lfn~l~~~g~~lV~TSN~~ 221 (438)
..++++++|.+... +.. ...++..|.+...+.++.+|+|+...
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 35789999988753 221 13356666777778899999988753
No 309
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=90.95 E-value=1 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.363 Sum_probs=21.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
.+=+-|+|+.|.|||.|+..+|+.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 466899999999999999999874
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.88 E-value=0.13 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.1
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
-+.|.|++|+|||.|+..+...+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999987663
No 311
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.87 E-value=0.13 Score=47.14 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.7
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.=..|+|+.|+|||.|++++.-.+-
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3468999999999999999987774
No 312
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.86 E-value=0.13 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.|.|++|+|||+++..+...+.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987763
No 313
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.85 E-value=0.13 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.0
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.-+.|.|++|+|||+++.++...+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999988773
No 314
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.74 E-value=0.16 Score=46.07 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=23.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++-+.|.|++|+|||.++.++...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45588999999999999999988875
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.69 E-value=0.14 Score=45.31 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
.|.-+.|.|++|||||++..++...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3556999999999999999999764
No 316
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=90.57 E-value=0.93 Score=40.86 Aligned_cols=76 Identities=11% Similarity=0.035 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH-HHhhh-
Q psy318 13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF-YESCE- 90 (438)
Q Consensus 13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f-~~~l~- 90 (438)
...+.+...|-..+-+.|.+++..+.. .+.+++.+++|+|||...-+. ...+.
T Consensus 14 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~a~TGsGKT~~~~~~~l~~l~~ 68 (219)
T 1q0u_A 14 FIIEAIKTLRFYKPTEIQERIIPGALR-------------------------GESMVGQSQTGTGKTHAYLLPIMEKIKP 68 (219)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHH-------------------------TCCEEEECCSSHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 344556666777889999999875432 146899999999999864332 23322
Q ss_pred cccceeeec----hhhhHHHHHHHHHH
Q psy318 91 TKQKQRVHF----NKFMLDVHAKIHEV 113 (438)
Q Consensus 91 ~~~k~R~Hf----~~fm~~v~~~l~~~ 113 (438)
...+.++-+ .+.+.++++.+.+.
T Consensus 69 ~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 69 ERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 122334444 34455555554444
No 317
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.55 E-value=2.7 Score=43.93 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=29.9
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318 17 EKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD 83 (438)
Q Consensus 17 ~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd 83 (438)
.+-..|--.+-|.|.+++..+-. ...+.+++.+|+|+|||...-
T Consensus 35 ~l~~~g~~~~~~~Q~~~i~~il~-----------------------~~~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 35 AITRMEFPGLTPVQQKTIKPILS-----------------------SEDHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp HHHTTTCSSCCHHHHHHHHHHHC-----------------------SSSEEEEEECCTTSCHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHc-----------------------cCCCeEEEEcCCCcHHHHHHH
Confidence 33344444589999988764320 124689999999999998433
No 318
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.42 E-value=0.5 Score=55.20 Aligned_cols=48 Identities=13% Similarity=0.289 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.+++++++|++||--. +|...+..+.+.+..++. |+.+|+-+.|
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHR 1275 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHR 1275 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEEECSS
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC-CCEEEEeccC
Confidence 57999999999999999876 576666666666666553 5555555555
No 319
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.10 E-value=0.19 Score=49.65 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 62 VKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 62 ~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.++.+-+-|.||+|+|||+|+.++..-+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3444558899999999999999997765
No 320
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.01 E-value=0.18 Score=44.78 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=21.4
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
-+.|.|++|+|||.+..++...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999988764
No 321
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.00 E-value=0.1 Score=47.94 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=15.7
Q ss_pred CCceEEEccCCCCHhHHHHHHH-Hhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFY-ESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~-~~l 89 (438)
++=+.|.||.|+|||+|+.++. ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4458899999999999999998 554
No 322
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=89.95 E-value=0.88 Score=46.60 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=30.9
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHH-CCCEEEEecCCChhhhh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQ-LGVVVVATSNRAPDDLY 226 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~P~~L~ 226 (438)
+.+.++|+|||.|..+... +....++..+.. ....+|+.|-.+|..+.
T Consensus 110 l~~~~~iViDEaH~~~~~~-~~~~~~~~~~~~~~~~~~il~SAT~~~~~~ 158 (459)
T 2z83_A 110 VPNYNLFVMDEAHFTDPAS-IAARGYIATKVELGEAAAIFMTATPPGTTD 158 (459)
T ss_dssp CCCCSEEEESSTTCCSHHH-HHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred ccCCcEEEEECCccCCchh-hHHHHHHHHHhccCCccEEEEEcCCCcchh
Confidence 4578999999999876432 223333333332 45678887877776654
No 323
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.87 E-value=0.19 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.-+.|.|++|||||++...+...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999999998764
No 324
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.66 E-value=0.23 Score=45.02 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.9
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+=+-|.||.|+|||+|+.++..-+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348899999999999999997765
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.60 E-value=0.19 Score=46.97 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.=|.|.|++|||||++...+...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44589999999999999999988764
No 326
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.44 E-value=0.21 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.|.|++|+|||+|+.++...+.
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhcc
Confidence 67999999999999999988775
No 327
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=89.44 E-value=1.5 Score=47.59 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=30.8
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHH-CCCEEEEecCCChhhhh
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQ-LGVVVVATSNRAPDDLY 226 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~-~g~~lV~TSN~~P~~L~ 226 (438)
+.+..+|++||.|..+......+ ..+..+.. ....+|+.|-.+|..+.
T Consensus 330 l~~l~lvViDEaH~~~~~~~~~~-~~l~~~~~~~~~~vl~~SAT~~~~i~ 378 (673)
T 2wv9_A 330 VPNYNLFVMDEAHFTDPASIAAR-GYIATRVEAGEAAAIFMTATPPGTSD 378 (673)
T ss_dssp CCCCSEEEEESTTCCCHHHHHHH-HHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred cccceEEEEeCCcccCccHHHHH-HHHHHhccccCCcEEEEcCCCChhhh
Confidence 46789999999999865433322 33333333 55677777777766544
No 328
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.44 E-value=0.19 Score=52.88 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=23.9
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+.++.|.||+|+|||+|+.++...++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999988774
No 329
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.37 E-value=0.48 Score=46.02 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.=+-|.|++|+|||+|+.++...+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44578999999999999999988775
No 330
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=89.34 E-value=0.19 Score=49.55 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=0.0
Q ss_pred EEEccCCCCHhHHHHHHHHhh
Q psy318 69 YIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 69 yL~G~vG~GKT~Lmd~f~~~l 89 (438)
.|+||.|+|||.|+++++-.+
T Consensus 27 ~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
No 331
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.28 E-value=0.21 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.3
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.|.||||+|||+++..+.....
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 68899999999999999987664
No 332
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.13 E-value=0.4 Score=41.81 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
.-+.|.|++|+|||.|+..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998654
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.05 E-value=0.23 Score=46.28 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.0
Q ss_pred eEEEccCCCCHhHHHHHHHHhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l 89 (438)
+-|.||.|+|||+|+.++...+
T Consensus 28 igI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7799999999999999997765
No 334
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.04 E-value=0.26 Score=47.04 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=22.9
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+-+.|.|++|+|||+|+.++...+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999999999988763
No 335
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.90 E-value=0.19 Score=46.49 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=32.2
Q ss_pred HHHHHHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318 172 PVANDIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSN 219 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN 219 (438)
.+|+.++.++++|++||-... ....+..++..+ ..|..+| +|.
T Consensus 114 ~lAraL~~~p~lllLDEPts~---~~~~l~~~l~~l-~~g~tii-vtH 156 (208)
T 3b85_A 114 AYMRGRTLNDAFVILDEAQNT---TPAQMKMFLTRL-GFGSKMV-VTG 156 (208)
T ss_dssp GGGTTCCBCSEEEEECSGGGC---CHHHHHHHHTTB-CTTCEEE-EEE
T ss_pred HHHHHHhcCCCEEEEeCCccc---cHHHHHHHHHHh-cCCCEEE-EEC
Confidence 457888889999999998887 445567777777 6677666 443
No 336
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.89 E-value=1.9 Score=39.22 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=42.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH-HHhh-hcc
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF-YESC-ETK 92 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f-~~~l-~~~ 92 (438)
.+.+-..|--.+-+.|.+++..+.. .+.+++.+++|+|||...-+. ...+ ...
T Consensus 36 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~ 90 (230)
T 2oxc_A 36 LEGLRAAGFERPSPVQLKAIPLGRC-------------------------GLDLIVQAKSGTGKTCVFSTIALDSLVLEN 90 (230)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCCcHHHHHHHHHHHHHHhcC
Confidence 3344444444489999998874311 256999999999999864332 2333 222
Q ss_pred cceeeec----hhhhHHHHHHHHHH
Q psy318 93 QKQRVHF----NKFMLDVHAKIHEV 113 (438)
Q Consensus 93 ~k~R~Hf----~~fm~~v~~~l~~~ 113 (438)
.+.|+-| .+....+++.+.+.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHH
Confidence 2345544 34455555555443
No 337
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=88.85 E-value=0.54 Score=45.76 Aligned_cols=26 Identities=8% Similarity=-0.110 Sum_probs=22.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.-.+|||+.|.||+..++.+...+.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~ 43 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA 43 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH
Confidence 45677899999999999999988774
No 338
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.79 E-value=0.24 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.4
Q ss_pred CceEEEccCCCCHhHHHHHHHHhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.-+-|.|+.|+|||+|+.++...+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 348999999999999999998766
No 339
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.61 E-value=0.28 Score=46.35 Aligned_cols=32 Identities=19% Similarity=0.490 Sum_probs=0.0
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
+-|.||.|+|||+|+.++..-++ +..-.+.|.
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~ 58 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLN 58 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC-CSEEEEEET
T ss_pred EEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC
No 340
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.48 E-value=0.26 Score=50.64 Aligned_cols=34 Identities=18% Similarity=0.403 Sum_probs=26.0
Q ss_pred CCc-eEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 65 PKG-LYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 65 pkG-lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
+.| +.|.||+|+|||+|+.++...++.. ..++.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~ 200 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILT 200 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEE
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEE
Confidence 445 6899999999999999998887533 344544
No 341
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.47 E-value=0.22 Score=62.81 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeechh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNK 101 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~~ 101 (438)
.++|+|.||+|||||+++..+...++...-.+++|+.
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~ 1340 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSS 1340 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeC
No 342
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.46 E-value=0.26 Score=46.33 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 47899999999999999987 79888888999999887777767776654
No 343
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.44 E-value=0.22 Score=46.70 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.++++.|.|++|+|||.|+-.+....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 35899999999999999998886544
No 344
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=88.40 E-value=0.77 Score=41.62 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=30.5
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM 82 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm 82 (438)
.+.+.+.|-..+-+.|.+++..+.. .+.+++.+|+|+|||...
T Consensus 32 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 32 LKSIIRVGILKPTPIQSQAWPIILQ-------------------------GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCChHHHHH
Confidence 3444555656788999888764321 246899999999999753
No 345
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.36 E-value=0.88 Score=41.42 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=31.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318 14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM 82 (438)
Q Consensus 14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm 82 (438)
..+.+-..|--.+-+.|.+++..+.. .+.+++.+|+|+|||...
T Consensus 36 l~~~l~~~~~~~~~~~Q~~~i~~~~~-------------------------~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 36 TLKGLQEAQYRLVTEIQKQTIGLALQ-------------------------GKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEEeCCCCcHHHHH
Confidence 34455555666789999988865321 256999999999999853
No 346
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.34 E-value=0.14 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.|.|++|+|||+|+.++...+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999988875
No 347
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.34 E-value=0.28 Score=41.02 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.2
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999988653
No 348
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.21 E-value=0.28 Score=40.90 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.4
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.+.|++|+|||.|+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999654
No 349
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.18 E-value=0.36 Score=46.99 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=28.1
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
.++-+.|.|+.|+|||+++..+...+.....+++.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~l 139 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAF 139 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 356688999999999999999988775334556655
No 350
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.15 E-value=0.27 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.=+.|.|++|||||.++.++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999965
No 351
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.13 E-value=0.28 Score=46.61 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 212 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 47899999999999999887 79888888999999988778777777765
No 352
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.10 E-value=0.3 Score=41.14 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=19.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|++.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999754
No 353
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.10 E-value=2.4 Score=48.69 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=26.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeec----hhhhHHHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF----NKFMLDVHAKIHE 112 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf----~~fm~~v~~~l~~ 112 (438)
.+.+++.+++|+|||...-....... ..+.++-+ -+.+.++++.+.+
T Consensus 93 g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp TCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHH
Confidence 36799999999999983322222211 22334433 3455555555544
No 354
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.89 E-value=0.33 Score=45.99 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=22.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
|.-+.|.|++|+|||+|+.++...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999987663
No 355
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.88 E-value=0.28 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred eEEEccCCCCHhHHHHHHHHhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..|+|+.|+|||.|++++.-++
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
No 356
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.88 E-value=0.3 Score=43.34 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.1
Q ss_pred eEEEccCCCCHhHHHHHHHHh
Q psy318 68 LYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~ 88 (438)
+.|.|++|+|||.|+..+...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999764
No 357
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.84 E-value=0.3 Score=46.68 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 47899999999999999987 79888888999999988778777777654
No 358
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.82 E-value=0.38 Score=44.44 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.-+.|.|++|+|||.++.++...+.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44589999999999999999987663
No 359
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=87.82 E-value=2.9 Score=50.26 Aligned_cols=62 Identities=13% Similarity=0.217 Sum_probs=40.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH-Hhhhcc
Q psy318 14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY-ESCETK 92 (438)
Q Consensus 14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~-~~l~~~ 92 (438)
.|+++-..+-=..+|-|.+++..+ + ...+.+++.+|+|+|||.++.+.. ..+...
T Consensus 915 ~~e~l~~~~f~~fnpiQ~q~~~~l---~---------------------~~~~nvlv~APTGSGKTliaelail~~l~~~ 970 (1724)
T 4f92_B 915 AFESLYQDKFPFFNPIQTQVFNTV---Y---------------------NSDDNVFVGAPTGSGKTICAEFAILRMLLQS 970 (1724)
T ss_dssp HHHTTTTTTCSBCCHHHHHHHHHH---H---------------------SCCSCEEEECCTTSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHH---h---------------------cCCCcEEEEeCCCCCchHHHHHHHHHHHHhC
Confidence 455555444344699999876543 2 124679999999999999887654 333333
Q ss_pred cceeeec
Q psy318 93 QKQRVHF 99 (438)
Q Consensus 93 ~k~R~Hf 99 (438)
.+.|+-|
T Consensus 971 ~~~kavy 977 (1724)
T 4f92_B 971 SEGRCVY 977 (1724)
T ss_dssp TTCCEEE
T ss_pred CCCEEEE
Confidence 3455655
No 360
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.80 E-value=0.32 Score=40.74 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.+.|++|+|||.|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999998653
No 361
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.78 E-value=0.29 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEccCCCCHhHHHHHHHHhhh
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+-|.|+.|+|||+|+++++....
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999988763
No 362
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.76 E-value=0.28 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.3
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
+=++|.|++|+|||+++..+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999764
No 363
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=87.75 E-value=1.1 Score=43.66 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=32.0
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF 85 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f 85 (438)
.+.+.+.|--.+-+.|.+++..+.. .+.+++.+|+|+|||...-+.
T Consensus 33 ~~~l~~~g~~~~~~~Q~~~i~~i~~-------------------------~~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 33 LMGIFEAGFEKPSPIQEEAIPVAIT-------------------------GRDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHH-------------------------TCCEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhc-------------------------CCCEEEECCCCcHHHHHHHHH
Confidence 4444445544589999998875432 146999999999999754433
No 364
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.65 E-value=0.33 Score=40.84 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.2
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.+.|++|+|||.|+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999998654
No 365
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.64 E-value=0.33 Score=40.63 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.+.|++|+|||.|+..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998653
No 366
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.62 E-value=0.31 Score=46.08 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+ ..|..+|++|..
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~tviivtH~ 203 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHR 203 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSS
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEeCC
Confidence 47899999999999999987 7888888888888888 467777777765
No 367
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.59 E-value=0.31 Score=46.55 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|..++.++++|++||--. +|+.....+.+++..+.+.|..+|++|..
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999999999999997 79888888999999987778777777765
No 368
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.58 E-value=0.3 Score=41.54 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.9
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-|.|.|++|+|||.|+..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 489999999999999999854
No 369
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.56 E-value=0.29 Score=48.70 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++-+.|.||+|+|||.|...+...+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999988764
No 370
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.55 E-value=1.2 Score=42.11 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=26.1
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
..=+-|.|+.|+|||+|+.++..-++ +..-++.|+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~ 67 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFE 67 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEC
Confidence 34477999999999999999977664 334456554
No 371
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.50 E-value=0.29 Score=41.32 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=17.6
Q ss_pred eEEEccCCCCHhHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~ 86 (438)
+.|.|++|+|||.|+..+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999999884
No 372
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.47 E-value=1.2 Score=39.95 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH
Q psy318 14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF 85 (438)
Q Consensus 14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f 85 (438)
..+.+...|--.+-+.|.+++..+-. .+.+++.+|+|+|||...-+.
T Consensus 25 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~li~~~TGsGKT~~~~~~ 71 (220)
T 1t6n_A 25 LLRAIVDCGFEHPSEVQHECIPQAIL-------------------------GMDVLCQAKSGMGKTAVFVLA 71 (220)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCCchhhhhhHH
Confidence 34455444544489999998864421 145999999999999865444
No 373
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.42 E-value=0.3 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCceEEEccCCCCHhHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~ 86 (438)
|.=|.|.|++|||||+++..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3459999999999999999997
No 374
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.41 E-value=0.34 Score=41.34 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|+..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999643
No 375
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=87.36 E-value=0.87 Score=50.39 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH
Q psy318 13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~ 86 (438)
...++..+.-.+.+.+.|.+++..+.. .+. .+.|..++|.|++|+|||..+-+..
T Consensus 356 ~~~~~~~~~lpf~lt~~Q~~ai~~I~~---~l~----------------~~~~~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 356 KLAEEFIKSLPFKLTNAQKRAHQEIRN---DMI----------------SEKPMNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHH---HHH----------------SSSCCCCEEECCSSSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHh---hcc----------------ccCCCcEEEEcCCCCCHHHHHHHHH
Confidence 455666667778999999998886543 332 1345689999999999998765543
No 376
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.28 E-value=0.32 Score=43.07 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.0
Q ss_pred ceEEEccCCCCHhHHHHHHHHhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
-+.|.|++|+|||.|+..+....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999997654
No 377
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.26 E-value=0.33 Score=40.92 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.9
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-|.+.|++|+|||.|++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 388999999999999999965
No 378
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.24 E-value=0.36 Score=40.71 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.+.|++|+|||.|++.+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999654
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.18 E-value=0.36 Score=44.99 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
++=+.|.|++|+|||+++..+...+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 344788899999999999999988853
No 380
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.13 E-value=0.31 Score=46.64 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..++..+.+.|..+|++|..
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 223 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 223 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSS
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence 47889999999999999987 78888888888888876667777777765
No 381
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.13 E-value=0.37 Score=40.50 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.4
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999754
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.08 E-value=0.35 Score=40.75 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.8
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|++|+|||.|++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 488999999999999999864
No 383
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.08 E-value=0.33 Score=41.70 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=18.5
Q ss_pred eEEEccCCCCHhHHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~ 87 (438)
+.|.|++|+|||.|+..+..
T Consensus 6 v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999965
No 384
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.08 E-value=0.33 Score=42.03 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.8
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.-+.|.|++|+|||.|+..+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999976
No 385
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.06 E-value=0.37 Score=40.49 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.1
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|++|+|||.|+..+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
No 386
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.04 E-value=0.37 Score=41.53 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.7
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|++.+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
No 387
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.03 E-value=0.36 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=0.0
Q ss_pred CCCCceEEEccCCCCHhHHHHHH
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIF 85 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f 85 (438)
+...=+.|.|+.|+|||+|+.++
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLL 66 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
No 388
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.95 E-value=0.27 Score=48.01 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=0.0
Q ss_pred eEEEccCCCCHhHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~ 86 (438)
..|+|+.|+|||.|+++++
T Consensus 27 ~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 27 TAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEECCTTTCSTHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
No 389
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.94 E-value=0.42 Score=43.13 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.7
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.-+.|.|++|+|||.+...+...+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4589999999999999999977653
No 390
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.89 E-value=0.33 Score=42.44 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=18.5
Q ss_pred eEEEccCCCCHhHHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~ 87 (438)
+.|.|++|+|||.|+..+..
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999865
No 391
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=86.88 E-value=1.4 Score=40.54 Aligned_cols=43 Identities=16% Similarity=-0.038 Sum_probs=31.1
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM 82 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm 82 (438)
.+.+.+.|--.+.+.|.+++..+.. .+.+++.+|+|+|||...
T Consensus 41 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 41 MDVIARQNFTEPTAIQAQGWPVALS-------------------------GLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTTTCCSCCHHHHHHHHHHHH-------------------------TCCEEEEECTTSCHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCcCHHHHHH
Confidence 3444445555589999999875432 146999999999999764
No 392
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.85 E-value=0.35 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.5
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.=+-|.|+.|+|||+|+.++...+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3478999999999999999987664
No 393
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.81 E-value=0.37 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
..-|.|.|++|+|||.|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3459999999999999999997644
No 394
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.80 E-value=0.39 Score=40.59 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.+.|++|+|||.|+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999998754
No 395
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.77 E-value=0.43 Score=46.89 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+.=+-|.|++|+|||+|+.++...++
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34478999999999999999988774
No 396
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.72 E-value=0.44 Score=45.74 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 63 KQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 63 ~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
....=+-|.|+.|+|||+|+.++..-++ +..-.+.|.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~ 79 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLD 79 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEEC
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.71 E-value=0.55 Score=45.94 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
+.=+.|.|+.|+|||+|+..+...+.. ...++.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l 135 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMF 135 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEE
Confidence 455889999999999999999877752 3445555
No 398
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.65 E-value=0.38 Score=46.52 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=0.0
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
+-|.|+.|+|||+|+.++..-++ +..-.+.|.
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~ 81 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEP-ATSGTVNLF 81 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHhCCCC-CCCeEEEEC
No 399
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.63 E-value=0.4 Score=40.89 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=19.8
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
--+.|.|++|+|||.|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999988653
No 400
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.57 E-value=1.3 Score=41.15 Aligned_cols=73 Identities=12% Similarity=0.067 Sum_probs=41.8
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHH-Hhh-hccc
Q psy318 16 YEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFY-ESC-ETKQ 93 (438)
Q Consensus 16 ~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~-~~l-~~~~ 93 (438)
+.+-..|-..+-+.|.+++..+.. .+.+++.+++|+|||...-+.. ..+ ..+.
T Consensus 56 ~~l~~~g~~~~~~~Q~~~i~~i~~-------------------------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~ 110 (249)
T 3ber_A 56 EACDQLGWTKPTKIQIEAIPLALQ-------------------------GRDIIGLAETGSGKTGAFALPILNALLETPQ 110 (249)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhC-------------------------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCC
Confidence 344444555778888887764321 2579999999999998643332 222 2222
Q ss_pred ceeeec----hhhhHHHHHHHHHH
Q psy318 94 KQRVHF----NKFMLDVHAKIHEV 113 (438)
Q Consensus 94 k~R~Hf----~~fm~~v~~~l~~~ 113 (438)
+.++-+ .+....+.+.+.+.
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Confidence 334433 34445555555444
No 401
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.54 E-value=0.43 Score=40.13 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.6
Q ss_pred eEEEccCCCCHhHHHHHHHHh
Q psy318 68 LYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~ 88 (438)
+.|.|++|+|||.|+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999653
No 402
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=86.49 E-value=1.1 Score=46.81 Aligned_cols=48 Identities=17% Similarity=0.014 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 22 NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 22 g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.++.+-++|.+++..+-... .+ ..++++|.+++|+|||..+-.+...+
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~---~~-----------------~~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSV---LQ-----------------GKKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp ----CCHHHHHHHHHHHHHH---HT-----------------TCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHH---hc-----------------CCCceEEEecCCCChHHHHHHHHHHH
Confidence 34578899999988765432 11 12568999999999999876665554
No 403
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.32 E-value=0.42 Score=41.12 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999754
No 404
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.31 E-value=0.43 Score=40.58 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
--+.|.|.+|+|||.|+..+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999654
No 405
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.29 E-value=1.7 Score=41.44 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=26.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
..=+-|.|+.|+|||+|+.++..-++ +..-.+.++
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~ 67 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLYD 67 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEEC
Confidence 34477999999999999999976653 334556554
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.27 E-value=0.39 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.+|++|.|++|+|||.|+-.+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999988854
No 407
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=86.27 E-value=1.4 Score=41.98 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=26.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
..=+-|.||.|+|||+|+.++..-++ +..-++.|+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~ 66 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVN 66 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence 34478999999999999999976653 334456554
No 408
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.26 E-value=0.42 Score=41.25 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=19.8
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|++.+...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 409
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.21 E-value=0.41 Score=47.78 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=26.7
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
..+-+.|.|+.|+|||+|+.++...++. ....+.+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~i 208 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITI 208 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEE
Confidence 3456899999999999999999887753 2344444
No 410
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.20 E-value=0.41 Score=40.75 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.3
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
.-+.|.|.+|+|||.|+..+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 411
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.18 E-value=0.4 Score=40.59 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=17.6
Q ss_pred eEEEccCCCCHhHHHHHHH
Q psy318 68 LYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~ 86 (438)
+.|.|++|+|||.|+..+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999985
No 412
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.17 E-value=0.44 Score=40.27 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.6
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
--+.|.|++|+|||.|+..+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999964
No 413
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.08 E-value=0.38 Score=41.60 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
.-|.|.|++|+|||.|++.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998654
No 414
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.07 E-value=0.4 Score=40.87 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=18.9
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-|.|.|++|+|||.|++.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999854
No 415
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=86.07 E-value=0.43 Score=40.59 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.1
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|++|+|||.|+..+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 416
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.03 E-value=0.39 Score=41.89 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=20.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
..-+.|.|++|+|||.|++.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 355999999999999999998643
No 417
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.02 E-value=0.45 Score=40.57 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.9
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|++|+|||.|+..+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 418
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.97 E-value=0.4 Score=44.29 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+=+.|.|+.|+|||+++..+...+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4589999999999999999988873
No 419
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=85.96 E-value=0.4 Score=47.75 Aligned_cols=43 Identities=5% Similarity=0.068 Sum_probs=30.0
Q ss_pred hhc-cCEEEEcCCCCCCcCCchHHHHHHHHHHHhhhCCCeEEEEeCC
Q psy318 341 CQI-FHTVIIRNVPQLNIKLRSQSRRFITLIDALYDNNIRLVISSDV 386 (438)
Q Consensus 341 a~~-f~ti~i~~VP~l~~~~~n~arRFI~LID~lYd~~vkL~~~a~~ 386 (438)
+.. -.+++++.+- +.-+......+..+|..+- .+..++++++.
T Consensus 302 ~~~~~~~lllDEp~--~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~ 345 (371)
T 3auy_A 302 IGNRVECIILDEPT--VYLDENRRAKLAEIFRKVK-SIPQMIIITHH 345 (371)
T ss_dssp HSSCCSEEEEESTT--TTCCHHHHHHHHHHHHHCC-SCSEEEEEESC
T ss_pred hcCCCCeEEEeCCC--CcCCHHHHHHHHHHHHHhc-cCCeEEEEECh
Confidence 456 7889998864 4456677788888888763 34467777665
No 420
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.82 E-value=0.46 Score=40.92 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999754
No 421
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=85.81 E-value=1.2 Score=41.72 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=28.1
Q ss_pred hcCCeEEEecCCCC-ChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhh
Q psy318 179 SKTWLICFDEFQVT-DIADAMILKRLFTELFQLGVVVVATSNRAPDDLY 226 (438)
Q Consensus 179 ~~~~lLc~DEf~v~-d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~ 226 (438)
.+..+|+|||.+.. +.+-...+..++..+ ....++|+.|-.+|.++.
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~-~~~~q~l~~SAT~~~~v~ 247 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLL-PTRRQTMLFSATQTRKVE 247 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHS-CSSSEEEEECSSCCHHHH
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhC-CCCCeEEEEEecCCHHHH
Confidence 55789999999963 222223344444443 344667777766666554
No 422
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.80 E-value=0.44 Score=41.06 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=19.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|+..+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998653
No 423
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.79 E-value=1.4 Score=41.19 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=26.0
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
..=+-|.|+.|+|||+|+.++..-++ +..-.+.|+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~ 66 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFN 66 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEC
Confidence 34478999999999999999977653 334455553
No 424
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=85.71 E-value=1.5 Score=41.33 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=27.3
Q ss_pred HhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChh
Q psy318 177 IISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPD 223 (438)
Q Consensus 177 ~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~ 223 (438)
.....++|++||.|..... .+..++..+. ....+|+.|-.||.
T Consensus 222 ~~~~~~~vIiDEaH~~~~~---~~~~il~~~~-~~~~~l~lSATp~~ 264 (282)
T 1rif_A 222 WFSQFGMMMNDECHLATGK---SISSIISGLN-NCMFKFGLSGSLRD 264 (282)
T ss_dssp GGGGEEEEEEETGGGCCHH---HHHHHTTTCT-TCCEEEEECSSCCT
T ss_pred HHhhCCEEEEECCccCCcc---cHHHHHHHhh-cCCeEEEEeCCCCC
Confidence 3567899999999998632 2333444332 24567777777653
No 425
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=85.64 E-value=0.69 Score=47.27 Aligned_cols=64 Identities=6% Similarity=0.053 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec---
Q psy318 23 EIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF--- 99 (438)
Q Consensus 23 ~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf--- 99 (438)
.+.+-+.|.+++..+-. .+.++|.|++|+|||..+-+....+-...+.++-+
T Consensus 111 ~~~l~~~Q~~ai~~~~~-------------------------~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV-------------------------NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp EECCCHHHHHHHHHHHH-------------------------HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CCCCCHHHHHHHHHHHh-------------------------cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 34788899988875422 14689999999999998865544332122334444
Q ss_pred -hhhhHHHHHHHH
Q psy318 100 -NKFMLDVHAKIH 111 (438)
Q Consensus 100 -~~fm~~v~~~l~ 111 (438)
...+....+.+.
T Consensus 166 ~~~L~~Q~~~~~~ 178 (510)
T 2oca_A 166 TTALTTQMADDFV 178 (510)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 234444444443
No 426
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.56 E-value=0.49 Score=40.53 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
--|.|.|++|+|||.|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45999999999999999998653
No 427
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=85.55 E-value=1.2 Score=43.51 Aligned_cols=75 Identities=9% Similarity=0.046 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH-HHhhhc-
Q psy318 14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF-YESCET- 91 (438)
Q Consensus 14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f-~~~l~~- 91 (438)
.++.+-+.|-..+-+.|.+++..+.. .+.+++.+++|+|||...-+. ...+..
T Consensus 51 ~~~~l~~~~~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~ 105 (414)
T 3eiq_A 51 LLRGIYAYGFEKPSAIQQRAILPCIK-------------------------GYDVIAQAQSGTGKTATFAISILQQIELD 105 (414)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHT-------------------------TCCEEECCCSCSSSHHHHHHHHHHHCCTT
T ss_pred HHHHHHHcCCCCCCHHHHHHhHHHhC-------------------------CCCEEEECCCCCcccHHHHHHHHHHHhhc
Confidence 45555566777789999998864321 245899999999999874333 333321
Q ss_pred ccceeeec----hhhhHHHHHHHHHH
Q psy318 92 KQKQRVHF----NKFMLDVHAKIHEV 113 (438)
Q Consensus 92 ~~k~R~Hf----~~fm~~v~~~l~~~ 113 (438)
..+.++-+ ......+++.+.+.
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHH
Confidence 12334433 23444455444443
No 428
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.54 E-value=0.56 Score=40.00 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
+.-|.|.|++|+|||.|+..+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44599999999999999999865
No 429
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.53 E-value=5.2 Score=41.39 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
.|+-+.+.|++|+|||+++..+...+.. ++.|+-.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 3677999999999999999999888753 3455543
No 430
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.51 E-value=0.49 Score=40.43 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|++.+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998653
No 431
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=85.50 E-value=0.26 Score=43.79 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.7
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|++|+|||.|++++..
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999998854
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.50 E-value=0.48 Score=41.36 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998653
No 433
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.44 E-value=0.5 Score=40.54 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.3
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999988653
No 434
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.37 E-value=0.43 Score=41.51 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.4
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|++.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999653
No 435
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.36 E-value=0.48 Score=46.13 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCeEEEecCCC-CChhhHHHHHHH-HHHHHHCCCEEEEecCC
Q psy318 172 PVANDIISKTWLICFDEFQV-TDIADAMILKRL-FTELFQLGVVVVATSNR 220 (438)
Q Consensus 172 ~va~~~~~~~~lLc~DEf~v-~d~~da~iL~~L-fn~l~~~g~~lV~TSN~ 220 (438)
.+|+.++.++++|++||--. +|+.....+..+ +..+ ..|..+|++|..
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~-~~~~tviivtHd 218 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSK 218 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC-TTTSEEEEECCC
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh-hCCCEEEEEecC
Confidence 47899999999999999987 687776666664 3333 347777777765
No 436
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.33 E-value=0.52 Score=42.41 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=22.3
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+-+.|.|+.|+|||.|+..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 35688999999999999999987764
No 437
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.28 E-value=0.48 Score=41.22 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.0
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
--+.|.|++|+|||.|+..+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34889999999999999998754
No 438
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.23 E-value=0.48 Score=47.90 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.2
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
..++|+|++|+|||+|+.++...+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4699999999999999999987764
No 439
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.18 E-value=0.51 Score=40.34 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998653
No 440
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.10 E-value=0.15 Score=48.09 Aligned_cols=32 Identities=25% Similarity=0.380 Sum_probs=22.8
Q ss_pred eEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
+.|.||.|+|||.|++++.-.+... .-+++|+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~-~G~i~~~ 61 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPD-LTLLHFR 61 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC-TTTC---
T ss_pred EEEECCCCCCHHHHHHHHhcccccC-CCeEEEC
Confidence 5688999999999999998877433 3345553
No 441
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.05 E-value=0.52 Score=41.32 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.9
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
--|.|.|++|+|||.|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998643
No 442
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.02 E-value=0.55 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
.|.=|+|.|++|+|||+++..+...+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35668899999999999999987655
No 443
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=84.95 E-value=0.66 Score=45.29 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=26.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF 99 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf 99 (438)
.+.=+.|.|+.|+|||+|+..+...+. +...++.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 345588999999999999999988775 23445555
No 444
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.88 E-value=0.54 Score=40.84 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.+.|.+|+|||.|+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
No 445
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=84.81 E-value=0.55 Score=40.18 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=19.9
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
--+.|.|++|+|||.|+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999988643
No 446
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.73 E-value=0.67 Score=45.92 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=27.5
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
.|.=+.|.|+.|+|||+|+..+...+. +...++.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEE
Confidence 345688999999999999999988774 334456653
No 447
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.66 E-value=0.56 Score=40.89 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999998653
No 448
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=84.56 E-value=1 Score=49.06 Aligned_cols=184 Identities=11% Similarity=0.058 Sum_probs=88.8
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecCCChhhhhcCCCCcCCcccHHHHHHhhccccccccccch
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSNRAPDDLYKNGLQRSNFLPFIDVLKTYCDVASLNSNIDY 257 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN~~P~~L~~~gl~r~~F~p~I~~L~~~~~vv~ld~g~Dy 257 (438)
..++++|++||.-.++.. ++..+...-..+|+||.... |++ -.|..-+.|+..| ..+..++|+...-|
T Consensus 253 ~~~~dlliVDEAAaIp~p-------ll~~ll~~~~~v~~~tTv~G---YEG-tGrgf~lk~~~~L-~~~~~~~L~~piR~ 320 (671)
T 2zpa_A 253 DEQADWLVVDEAAAIPAP-------LLHQLVSRFPRTLLTTTVQG---YEG-TGRGFLLKFCARF-PHLHRFELQQPIRW 320 (671)
T ss_dssp CCCCSEEEEETGGGSCHH-------HHHHHHTTSSEEEEEEEBSS---TTB-BCHHHHHHHHHTS-TTCEEEECCSCSSS
T ss_pred cccCCEEEEEchhcCCHH-------HHHHHHhhCCeEEEEecCCc---CCC-cCcccccccHhhc-CCCcEEEccCceec
Confidence 456999999998887744 34455545445666555542 332 3343225566655 33556666645433
Q ss_pred hccc--------------c--ccccCCCce-eecCch---hHHHHHHHHHHHHcCCCCCCccCceec----cCCceEEec
Q psy318 258 RSLK--------------A--NAEESSTKT-YFVKNF---ANEKKLHGIFKLLCSQENDIVRPRVIT----IMGRNVTFN 313 (438)
Q Consensus 258 R~~~--------------~--~~~~~~~~~-~~~~~~---~~~~~~~~~f~~l~~~~~~~~~~~~l~----v~gR~l~v~ 313 (438)
-... . ......... +++..+ ..+..+.++|.-+...+- ...|..|. .-+..+-|-
T Consensus 321 a~~DplE~wl~~~llld~~~~~~~~~~~~~~~~~~~~~l~~~e~~L~~~~~Ll~~aHY-r~sp~dL~~llD~p~~~l~va 399 (671)
T 2zpa_A 321 AQGCPLEKMVSEALVFDDENFTHTPQGNIVISAFEQTLWQSDPETPLKVYQLLSGAHY-RTSPLDLRRMMDAPGQHFLQA 399 (671)
T ss_dssp CTTCHHHHHHHHHHTCCCGGGGSCCCSCCEEEEEETTHHHHCTHHHHHHHHHHHHHSS-SBCHHHHHHHHHCTTEEEEEE
T ss_pred CCCCCHHHHHHHhhCcCCCCCCCCCCCcceEEEEcHHHhhcCHHHHHHHHHHHHhccc-CCCHHHHHHHhcCCCceEEEE
Confidence 2110 0 000011112 223332 445678888877764432 12223332 123344443
Q ss_pred cccC---cEEEeeHH-----HHhc-------CCCChhhHHHHhhc--------cCEEEEcCCCCCCc-CCchHHHHHHHH
Q psy318 314 KTCG---QILEATFD-----ELCS-------RDLGSSDYLHICQI--------FHTVIIRNVPQLNI-KLRSQSRRFITL 369 (438)
Q Consensus 314 ~~~~---~va~f~F~-----eLC~-------~plg~aDYl~la~~--------f~ti~i~~VP~l~~-~~~n~arRFI~L 369 (438)
...+ ++++..++ ++|. +|.|-.==-.++.+ ...+.|.+|=+... ..+--+++.+..
T Consensus 400 ~~~g~IVG~i~v~~eG~l~~~~~~~~~~g~rRp~G~lip~~l~~~~~~~e~~~~~~~~I~~IAV~P~~rg~GiG~~LL~~ 479 (671)
T 2zpa_A 400 AGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAG 479 (671)
T ss_dssp ECSSSEEEEEEEEEEECCCHHHHHHHHHTSCCCSSCHHHHHHHHHSSCTTGGGSEEEEEEEEEECTTSCSSSHHHHHHHH
T ss_pred EECCeEEEEEEEEEcCCcCHHHHHHHHhcccCCCCcchhHHHHHhhcchhhcccCceEEEEEEECHHHcCCCHHHHHHHH
Confidence 3333 45555543 2321 24442111122222 34455555554433 356788888887
Q ss_pred HHHhh
Q psy318 370 IDALY 374 (438)
Q Consensus 370 ID~lY 374 (438)
+-..+
T Consensus 480 ~e~~a 484 (671)
T 2zpa_A 480 ALQYT 484 (671)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 76665
No 449
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.54 E-value=0.56 Score=41.23 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.0
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
--|.|.|++|+|||.|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998654
No 450
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=84.49 E-value=0.49 Score=40.80 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.7
Q ss_pred eEEEccCCCCHhHHHHHHHHh
Q psy318 68 LYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 68 lyL~G~vG~GKT~Lmd~f~~~ 88 (438)
|.|.|++|+|||.|+..+...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999998653
No 451
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=84.48 E-value=1.8 Score=42.70 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHHhhhcccceeeec--
Q psy318 22 NEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHF-- 99 (438)
Q Consensus 22 g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf-- 99 (438)
..+.+-|.|.+++..+- ..+.+++.+|+|+|||...-+...... ..+.++-|
T Consensus 18 ~~~~~~~~Q~~~i~~i~-------------------------~~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~ 71 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIV-------------------------QGKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVF 71 (414)
T ss_dssp HSSCCCHHHHHHHHHHT-------------------------TTCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred cCCCCCHHHHHHHHHHh-------------------------cCCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEE
Confidence 45677888888776432 124689999999999983332222221 22334433
Q ss_pred --hhhhHHHHHHHHH
Q psy318 100 --NKFMLDVHAKIHE 112 (438)
Q Consensus 100 --~~fm~~v~~~l~~ 112 (438)
.+.+.++++.+.+
T Consensus 72 Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 72 PTVTLVKQTLERLQK 86 (414)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 4555666655554
No 452
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.33 E-value=0.42 Score=41.09 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred CCceEEEccCCCCHhHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFY 86 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~ 86 (438)
+--+.|.|++|+|||.|+..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4569999999999999999885
No 453
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=84.32 E-value=1.3 Score=47.34 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=26.9
Q ss_pred HHhhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318 176 DIISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSN 219 (438)
Q Consensus 176 ~~~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN 219 (438)
.+....+.|++||||-+++.+-. ++..|...+..+++.++
T Consensus 203 ~~~~~~~~ilVDEfQDt~~~Q~~----ll~~L~~~~~~l~~vGD 242 (673)
T 1uaa_A 203 RWQNKIRYLLVDEYQDTNTSQYE----LVKLLVGSRARFTVVGD 242 (673)
T ss_dssp HHHTTCSEEEESCGGGCBHHHHH----HHHHHHTTTCCEEEECC
T ss_pred HHHhhCcEEEEeccccCCHHHHH----HHHHHhcCCCeEEEEeC
Confidence 34456799999999999876544 44555555555666665
No 454
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.31 E-value=0.68 Score=41.71 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
++-+.|.|+.|+|||.|+..+...+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 35688999999999999999988775
No 455
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.26 E-value=0.61 Score=46.38 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.2
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|+-+.|.||+|+|||.|+..+...++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 456789999999999999999987764
No 456
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.22 E-value=0.6 Score=40.84 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 457
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=84.17 E-value=0.6 Score=40.68 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.2
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-|.|.|.+|+|||.|+..+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 599999999999999999864
No 458
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.12 E-value=0.6 Score=41.87 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=21.7
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.-+.|.|.+|+|||.|+..+...+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999987753
No 459
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=84.07 E-value=0.61 Score=40.50 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 460
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.06 E-value=0.53 Score=41.10 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.5
Q ss_pred CCceEEEccCCCCHhHHHHHHHHh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
.--+.|.|++|+|||.|+..+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345999999999999999998653
No 461
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.03 E-value=0.58 Score=41.05 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|++.+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998653
No 462
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.94 E-value=0.57 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998653
No 463
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.93 E-value=0.88 Score=46.54 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318 24 IQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM 82 (438)
Q Consensus 24 l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm 82 (438)
+.++..|..+-..+..+.+.+.+ | -.--|+-||..|+||||.|
T Consensus 116 F~~~~~Q~~Vf~~v~~lv~~~l~------G----------~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 116 FDQQDTNVDVFKEVGQLVQSSLD------G----------YNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHT------T----------CCEEEEEESCTTSSHHHHH
T ss_pred ECCCCchHHHHHHHHHHHHHHhC------C----------cceEEEEECCCCCCCceEe
Confidence 34567788887777666655432 0 1125899999999999999
No 464
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=83.90 E-value=0.63 Score=40.72 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.1
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|++|+|||.|+..+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999999865
No 465
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.79 E-value=1.8 Score=42.41 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318 14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM 82 (438)
Q Consensus 14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm 82 (438)
..+.+-..|--.+-+.|.+++..+.. .+.+++.+|+|+|||...
T Consensus 26 l~~~l~~~~~~~~~~~Q~~~i~~i~~-------------------------~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 26 IMGNIELTRYTRPTPVQKHAIPIIKE-------------------------KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHcc-------------------------CCCEEEEcCCCCHHHHHH
Confidence 34555556766889999999874321 256999999999999743
No 466
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.77 E-value=0.71 Score=45.74 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.3
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.|.=+-|.|++|||||+|+.++...+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344588999999999999999977664
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.75 E-value=0.65 Score=40.21 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.1
Q ss_pred CceEEEccCCCCHhHHHHHHHHh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
--|.|.|++|+|||.|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999654
No 468
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.70 E-value=0.64 Score=41.05 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
--|.|.|++|+|||.|+..+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999864
No 469
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=83.66 E-value=0.61 Score=41.21 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.4
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998653
No 470
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.60 E-value=0.65 Score=40.60 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.3
Q ss_pred ceEEEccCCCCHhHHHHHHHHhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
-|.|.|++|+|||.|+..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 49999999999999999987643
No 471
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=83.59 E-value=1.8 Score=42.37 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHH
Q psy318 14 QYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIF 85 (438)
Q Consensus 14 ~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f 85 (438)
..+.+-..|--.+-+.|.+++..+.. .+.+++.+++|+|||...-+.
T Consensus 48 l~~~l~~~g~~~~~~~Q~~ai~~i~~-------------------------~~~~lv~a~TGsGKT~~~~~~ 94 (410)
T 2j0s_A 48 LLRGIYAYGFEKPSAIQQRAIKQIIK-------------------------GRDVIAQSQSGTGKTATFSIS 94 (410)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhC-------------------------CCCEEEECCCCCCchHHHHHH
Confidence 34444455555589999998875421 146999999999999765543
No 472
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.58 E-value=0.72 Score=43.58 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=23.6
Q ss_pred cccccCCCCCceEEEccCCCCHhHHHHHHHHhhhc
Q psy318 57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCET 91 (438)
Q Consensus 57 ~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~~l~~ 91 (438)
+|..+...++=+.|.|++|+|||+++..+...+..
T Consensus 19 ~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 19 YFQSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp -------CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34333333455788999999999999999888853
No 473
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=83.55 E-value=0.59 Score=46.56 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHH
Q psy318 25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMD 83 (438)
Q Consensus 25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd 83 (438)
.++..|.++-+.+..+.+.+.+ .-.--|+-||..|+|||+.|-
T Consensus 57 ~~~~~Q~~Vy~~v~~lv~~~l~----------------G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 57 SPQASQQDVFQEVQALVTSCID----------------GFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp CTTCCHHHHHTTTHHHHHHHHT----------------TCCEEEEEESSTTSSHHHHHT
T ss_pred CCCCCcHhHHHHHHHHHHHHhC----------------CCEEEEEeECCCCCCCcEEEe
Confidence 3566788777766555554422 011258899999999999993
No 474
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=83.53 E-value=0.66 Score=40.69 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.4
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|++|+|||.|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4999999999999999888653
No 475
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=83.51 E-value=1.9 Score=37.69 Aligned_cols=47 Identities=15% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHhhcCCeEEEecCCC-CChhhHHHHHHHHHHHHHCCCEEEEecCC
Q psy318 174 ANDIISKTWLICFDEFQV-TDIADAMILKRLFTELFQLGVVVVATSNR 220 (438)
Q Consensus 174 a~~~~~~~~lLc~DEf~v-~d~~da~iL~~Lfn~l~~~g~~lV~TSN~ 220 (438)
|+.++.++++|++||--. +|+.....+..++..+...|..+|++|..
T Consensus 75 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 122 (148)
T 1f2t_B 75 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 122 (148)
T ss_dssp HHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred HHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEECh
Confidence 577778899999999776 78887777888888887667777777765
No 476
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=83.46 E-value=0.65 Score=39.88 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=19.1
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-|.|.|++|+|||.|+..+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 489999999999999999974
No 477
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=83.46 E-value=0.51 Score=40.43 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.5
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|+..+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998653
No 478
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=83.45 E-value=1.6 Score=44.17 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318 13 KQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM 82 (438)
Q Consensus 13 ~~Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm 82 (438)
..++.+-..|--.+.+.|.+++..+-. ..++.+++.|++|+|||...
T Consensus 102 ~l~~~l~~~g~~~p~~~Q~~ai~~il~-----------------------~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 102 QLLQGVYAMGFNRPSKIQENALPLMLA-----------------------EPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHTS-----------------------BSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHc-----------------------CCCCcEEEEcCCCCchhHHH
Confidence 446666777777889999998864421 12468999999999999763
No 479
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=83.38 E-value=0.62 Score=40.31 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred CCceEEEccCCCCHhHHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.--+.+.|++|+|||.|+..+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999864
No 480
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=83.29 E-value=2.2 Score=40.14 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=26.8
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhhcccceeeech
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFN 100 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~~~~k~R~Hf~ 100 (438)
...=+-|.|+.|+|||+|+.++..-++ +..-.+.|.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~ 69 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLID 69 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEEC
Confidence 344588999999999999999977664 334556654
No 481
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=83.29 E-value=0.59 Score=46.99 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=20.6
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
=..|+|+.|+|||.|+++++-.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~~ 51 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLALT 51 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhcc
Confidence 367999999999999999986553
No 482
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=83.28 E-value=1.2 Score=42.51 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=26.6
Q ss_pred CCCceEEEccCCCCHhHHHHHHHHhhh-cccceeeech
Q psy318 64 QPKGLYIYGAVGGGKTMLMDIFYESCE-TKQKQRVHFN 100 (438)
Q Consensus 64 ~pkGlyL~G~vG~GKT~Lmd~f~~~l~-~~~k~R~Hf~ 100 (438)
...=+-|.|+.|+|||+|+.++..-+. .+..-.+.|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 334488999999999999999987531 2334556654
No 483
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=83.28 E-value=1.8 Score=47.04 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=25.2
Q ss_pred hhcCCeEEEecCCCCChhhHHHHHHHHHHHHHCCCEEEEecC
Q psy318 178 ISKTWLICFDEFQVTDIADAMILKRLFTELFQLGVVVVATSN 219 (438)
Q Consensus 178 ~~~~~lLc~DEf~v~d~~da~iL~~Lfn~l~~~g~~lV~TSN 219 (438)
....+.|++||+|-++..+-.+ +..|...+..+++.++
T Consensus 214 ~~rf~~IlVDEfQDtn~~Q~~l----l~~L~~~~~~l~vVGD 251 (724)
T 1pjr_A 214 QYKFQYIHIDEYQDTNRAQYTL----VKKLAERFQNICAVGD 251 (724)
T ss_dssp HHHCSEEEESSGGGCCHHHHHH----HHHHHTTTCCEEEEEC
T ss_pred HhhCCEEEEEhHhcCCHHHHHH----HHHHHcCCCeEEEEEC
Confidence 3457999999999998776444 4444444444556665
No 484
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=83.27 E-value=0.65 Score=43.33 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.8
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-.|-|+|+.|||||++..+|..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999965
No 485
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=83.18 E-value=0.7 Score=40.43 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-|.|.|.+|+|||.|+..+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999764
No 486
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.13 E-value=0.38 Score=43.18 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.9
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
+-+-|.|+.|+|||+|+.++...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999987775
No 487
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.12 E-value=0.67 Score=40.34 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
--|.|.|++|+|||.|+..+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3589999999999999999965
No 488
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.11 E-value=0.71 Score=45.67 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.4
Q ss_pred CceEEEccCCCCHhHHHHHHHHhhh
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.=+-|.|++|+|||.|++++...+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3478999999999999999987663
No 489
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=83.10 E-value=0.63 Score=40.52 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred CceEEEccCCCCHhHHHHHHHH
Q psy318 66 KGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 66 kGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.-|.|.|.+|+|||.|+..+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999854
No 490
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.01 E-value=0.71 Score=40.55 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.2
Q ss_pred ceEEEccCCCCHhHHHHHHHHh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
-+.|.|++|+|||.|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999877553
No 491
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=82.95 E-value=0.72 Score=46.26 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHH
Q psy318 25 QEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLM 82 (438)
Q Consensus 25 ~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lm 82 (438)
.++..|.++-+.+..+.+.+.+ .-.--|+-||..|+||||.|
T Consensus 61 ~~~~~Q~~Vy~~v~~lv~~~l~----------------G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 61 DQQDTNVDVFKEVGQLVQSSLD----------------GYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp CTTCCHHHHHHHHHHHHGGGGG----------------TCCEEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcC----------------CceeEEEEECCCCCCCcEec
Confidence 3566788877765544433211 11124889999999999999
No 492
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.93 E-value=0.72 Score=40.50 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.6
Q ss_pred CCceEEEccCCCCHhHHHHHHHHh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYES 88 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~ 88 (438)
.--|.|.|++|+|||.|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998654
No 493
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=82.86 E-value=0.66 Score=40.80 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=18.9
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-|.|.|.+|+|||.|++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999854
No 494
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.85 E-value=0.7 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.7
Q ss_pred ceEEEccCCCCHhHHHHHHHHhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESC 89 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l 89 (438)
=+-|.|++|+|||.|++.+...+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 495
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=82.85 E-value=0.66 Score=41.14 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.7
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|.+|+|||.|+..|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999999863
No 496
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.82 E-value=0.42 Score=46.26 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=18.2
Q ss_pred ceEEEccCCCCHhHHHHHHHHhhh
Q psy318 67 GLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
=|-|.|+.|+|||+++..+...+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999988664
No 497
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.80 E-value=1.8 Score=41.87 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=42.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCceEEEccCCCCHhHHHHHHHH-hh-hcc
Q psy318 15 YYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYE-SC-ETK 92 (438)
Q Consensus 15 Y~~~v~~g~l~~D~~Q~~a~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~pkGlyL~G~vG~GKT~Lmd~f~~-~l-~~~ 92 (438)
.+.+...|--.+-|.|.+++..+.. .+.+++.+|+|+|||..+-+..- .+ ...
T Consensus 20 ~~~l~~~g~~~~~~~Q~~~i~~~~~-------------------------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~ 74 (391)
T 1xti_A 20 LRAIVDCGFEHPSEVQHECIPQAIL-------------------------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT 74 (391)
T ss_dssp HHHHHHHSCCSCCHHHHHHHHHHTT-------------------------TCCEEEECSSCSSHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhc-------------------------CCcEEEECCCCCcHHHHHHHHHHHhhcccC
Confidence 3444444544489999998764321 25699999999999986544332 22 122
Q ss_pred cceeeec----hhhhHHHHHHHHHH
Q psy318 93 QKQRVHF----NKFMLDVHAKIHEV 113 (438)
Q Consensus 93 ~k~R~Hf----~~fm~~v~~~l~~~ 113 (438)
.+.++-+ .+....+.+.+.++
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHH
Confidence 2334433 34445555545443
No 498
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=82.79 E-value=0.7 Score=40.71 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.4
Q ss_pred ceEEEccCCCCHhHHHHHHHH
Q psy318 67 GLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 67 GlyL~G~vG~GKT~Lmd~f~~ 87 (438)
-+.|.|++|+|||.|+..+..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 499
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=82.71 E-value=0.59 Score=46.29 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCceEEEccCCCCHhHHHHHHHHhhh
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYESCE 90 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~~l~ 90 (438)
.+-+-|.|+.|+|||+|+.++...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999977664
No 500
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=82.67 E-value=0.74 Score=40.60 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.1
Q ss_pred CCceEEEccCCCCHhHHHHHHHH
Q psy318 65 PKGLYIYGAVGGGKTMLMDIFYE 87 (438)
Q Consensus 65 pkGlyL~G~vG~GKT~Lmd~f~~ 87 (438)
.--|.|.|++|+|||.|+..+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 34699999999999999999864
Done!