RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy318
(438 letters)
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 31.7 bits (70), Expect = 0.16
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 30 QEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC 89
+ V +L N + +N + S +D + +YG G GKT + +
Sbjct: 19 NKGSVMKLKNWLANWEN--SKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 76
Query: 90 ETKQKQRVHFNKFMLDVH 107
++ + +
Sbjct: 77 GYDILEQNASDVRSKTLL 94
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 31.2 bits (70), Expect = 0.20
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 138 EEEEKEREREREREREREREREREREA 164
++++ + R++ E R A
Sbjct: 247 APQDRDARIAQLRQQTFTAPGEAIRAA 273
Score = 30.8 bits (69), Expect = 0.25
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 137 KEEEEKEREREREREREREREREREREAK 165
++ + ++R+ + R++ A
Sbjct: 238 RDRIAAQGLAPQDRDARIAQLRQQTFTAP 266
Score = 30.8 bits (69), Expect = 0.30
Identities = 3/31 (9%), Positives = 12/31 (38%)
Query: 136 MKEEEEKEREREREREREREREREREREAKS 166
E + + ++R+ + R++ +
Sbjct: 235 AAERDRIAAQGLAPQDRDARIAQLRQQTFTA 265
Score = 30.8 bits (69), Expect = 0.31
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 137 KEEEEKEREREREREREREREREREREA 164
+ R++ E R +R A
Sbjct: 252 DARIAQLRQQTFTAPGEAIRAASLDRGA 279
Score = 30.4 bits (68), Expect = 0.39
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 131 NRLDVMKEEEEKEREREREREREREREREREREAK 165
D + + ++R+ + R++ EA
Sbjct: 236 AERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAI 270
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.9 bits (67), Expect = 0.27
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 118 ARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKS 166
+ D ++ +P R D EE +K+ E ER + +E E + K
Sbjct: 25 SFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 73
Score = 27.5 bits (61), Expect = 2.0
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 137 KEEEEKEREREREREREREREREREREAK 165
EE + +E+ ++ + REA
Sbjct: 84 IEENNNFIKMAKEKLAQKMESNKENREAH 112
Score = 27.2 bits (60), Expect = 2.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 136 MKEEEEKEREREREREREREREREREREAK 165
++ EE+ + +E E + +RE ERE
Sbjct: 51 LEAAEERRKYQEAELLKHLAEKREHEREVI 80
Score = 26.8 bits (59), Expect = 3.3
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 137 KEEEEKEREREREREREREREREREREAKSY 167
K EE + +E+ ++ + +++
Sbjct: 82 KAIEENNNFIKMAKEKLAQKMESNKENREAH 112
Score = 26.0 bits (57), Expect = 6.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 136 MKEEEEKEREREREREREREREREREREAK 165
+E E + +RE ERE ++ E
Sbjct: 59 KYQEAELLKHLAEKREHEREVIQKAIEENN 88
Score = 25.6 bits (56), Expect = 6.9
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 136 MKEEEEKEREREREREREREREREREREAK 165
+ E+ E ERE ++ E + +E
Sbjct: 69 LAEKREHEREVIQKAIEENNNFIKMAKEKL 98
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 30.0 bits (67), Expect = 0.51
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Query: 17 EKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGG 76
+ + + V L + + + + + + G +
Sbjct: 109 IMFGSTGSADIEEWMAGVAWLHCLLPKMDSV---VYDFLKCMVYNIPKKRYWLFKGPIDS 165
Query: 77 GKTML 81
GKT L
Sbjct: 166 GKTTL 170
>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 439
Score = 29.5 bits (66), Expect = 0.79
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 16/141 (11%)
Query: 238 FIDVLKTYCDVASLNSNIDYRSLKANAEESSTKTYFVKNFANEKKL--HGIFKLLCSQEN 295
F+ L T C + SN S F + + + G +
Sbjct: 111 FVSGLHTLCGAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGK 170
Query: 296 DIVRPRVITIMGRNVTF-----NKTCGQILEATFDELCSRDLG---------SSDYLHIC 341
+V+P I ++ R + F +T G ILE DLG D+L
Sbjct: 171 MLVQPNEICVIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPI 230
Query: 342 QIFHTVIIRNVPQLNIKLRSQ 362
+ + + K + +
Sbjct: 231 AWYEDRQVPGGYTVINKYQGK 251
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 29.2 bits (64), Expect = 0.80
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 30 QEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC 89
QE++ ++L + + + + + L ++G G GKT L +
Sbjct: 14 QERLKQKL--------------RVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 59
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 29.6 bits (66), Expect = 0.81
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 134 DVMKEEEEKERERERERERERERERERE 161
D + K E +RE +E E +
Sbjct: 327 DFNLIAKTKTELEETQRELRKEEEAKGI 354
Score = 26.2 bits (57), Expect = 8.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 136 MKEEEEKEREREREREREREREREREREAK 165
+K + + + E +RE +E EAK
Sbjct: 323 IKLGDFNLIAKTKTELEETQRELRKEEEAK 352
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 29.0 bits (63), Expect = 1.2
Identities = 8/70 (11%), Positives = 23/70 (32%)
Query: 56 SFFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKK 115
++ ++ + G G GKT+ + +E + K R + + + +
Sbjct: 34 NWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 93
Query: 116 ILARDKAKSY 125
+ +
Sbjct: 94 ARSLNIPFPR 103
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.6 bits (63), Expect = 1.5
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 136 MKEEEEKERERERERERERERERERERE 163
++E+E+ +E ++ R + E + +
Sbjct: 271 LQEQEQLLKEGFQKESRIMKNEIQDLQT 298
Score = 28.2 bits (62), Expect = 2.2
Identities = 13/158 (8%), Positives = 47/158 (29%), Gaps = 10/158 (6%)
Query: 9 SLPSKQYYEKLSNNEIQEDKHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKG- 67
P ++ + ++ + Q ++ L Y Q++ + + +
Sbjct: 132 FSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDA 191
Query: 68 LYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDP 127
+ K +++ E+ Q ++ + + ++ +
Sbjct: 192 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ---- 247
Query: 128 GVPNRLDVMKEEEEKEREREREREREREREREREREAK 165
L E + + +E+ER + + + + +
Sbjct: 248 -----LTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 280
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 276
Score = 28.0 bits (62), Expect = 2.5
Identities = 13/67 (19%), Positives = 21/67 (31%)
Query: 115 KILARDKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPVA 174
+ D K +P +VM+ E + RE+ E + I +A
Sbjct: 100 YLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDHASYIVDLA 159
Query: 175 NDIISKT 181
I T
Sbjct: 160 RAIAYNT 166
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 27.5 bits (60), Expect = 2.6
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 68 LYIYGAVGGGKTMLMDIFYESCETKQKQ--RVHFNKFMLDVHAKIHEVKKILARDKAKSY 125
++IYG+VG GKT L+ + + + + F + + + R+ KS
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSV 98
Query: 126 DPGVPNRLDVMKEEEEKERER 146
D + + + + +E + E
Sbjct: 99 DLLLLDDVQFLSGKERTQIEF 119
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 27.8 bits (61), Expect = 3.5
Identities = 17/149 (11%), Positives = 40/149 (26%), Gaps = 14/149 (9%)
Query: 28 KHQEQIVKQLDNVYVSIKNYAPQSKSMFSFFQDKVKQPKGLYIYGAVGGGKTML------ 81
+ + + + ++ +P + + G Y +
Sbjct: 244 ELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHSKKA 303
Query: 82 --------MDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPGVPNRL 133
M Y++ Q NK +L V I + K D +P +
Sbjct: 304 LMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKP 363
Query: 134 DVMKEEEEKERERERERERERERERERER 162
+ + E +R +++ R+
Sbjct: 364 EDIDMNPEALTAWKRAAAAVYRKDKARKS 392
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 27.2 bits (59), Expect = 3.9
Identities = 6/33 (18%), Positives = 8/33 (24%)
Query: 57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESC 89
+ + G GKT L E
Sbjct: 32 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES 64
>d1omha_ d.89.1.5 (A:) TrwC relaxase {Escherichia coli [TaxId: 562]}
Length = 293
Score = 27.2 bits (60), Expect = 4.4
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 296 DIVRPRVITIMGRNVTFNKTCGQILEATFDELCSRDLGSSDY-LHICQIFHTVIIRNVPQ 354
+ T +T G ++ F SR+ D LH H VI+ +
Sbjct: 120 QAEARAQARQKIQGKTRIETTGNLVIGKFRHETSRER---DPQLHT----HAVILNMTKR 172
Query: 355 LNIKLRSQS----RRFITLIDALYDNNIR 379
+ + R+ + + A+Y+ +
Sbjct: 173 SDGQWRALKNDEIVKATRYLGAVYNAELA 201
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 26.7 bits (59), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 57 FFQDKVKQPKGLYIYGAVGGGKTML 81
F + + PKG+ + G G GKT L
Sbjct: 34 FHEMGARIPKGVLLVGPPGVGKTHL 58
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 26.1 bits (57), Expect = 6.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 139 EEEKEREREREREREREREREREREA 164
EEEKE R E+ R+ E +
Sbjct: 132 EEEKESHRIAVLRAEQRHIRKAESKK 157
>d1wb1a3 b.44.1.1 (A:272-387) Elongation factor SelB, domain 3
{Methanococcus maripaludis [TaxId: 39152]}
Length = 116
Score = 25.6 bits (56), Expect = 6.6
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 78 KTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDK 121
K + DIF + K +VH N ML V A KK+
Sbjct: 11 KIKISDIFKYN--LTPKMKVHLNVGMLIVPAVAVPFKKVTFGKT 52
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 26.3 bits (58), Expect = 6.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 57 FFQDKVKQPKGLYIYGAVGGGKTML 81
F + K PKG+ + G G GKT+L
Sbjct: 37 FQKLGGKIPKGVLMVGPPGTGKTLL 61
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 26.1 bits (56), Expect = 8.7
Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 14/157 (8%)
Query: 57 FFQDKVKQPKGLYIYGAVGGGKTMLMDIFYESCETKQKQRVHFNKFMLDVHAKIHEVKKI 116
F VK P+G+ +YG G GKT+ + F ++ +K+ +
Sbjct: 30 FKAIGVKPPRGILLYGPPGTGKTL-----IARAVANETGAFFFLINGPEIMSKLAGESES 84
Query: 117 LAR---DKAKSYDPGVPNRLDVMKEEEEKEREREREREREREREREREREAKSYDPIPPV 173
R ++A+ P + ++ ++E+ R + K + +
Sbjct: 85 NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 144
Query: 174 A--NDIISKTWLI----CFDEFQVTDIADAMILKRLF 204
A N S + FD I DA +
Sbjct: 145 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEIL 181
>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 167
Score = 25.5 bits (56), Expect = 8.9
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 161 EREAKSYDPIPPVANDIISKTW 182
+ ++ +PP+ D SK W
Sbjct: 23 QATLDDFETLPPLGQDAASKAW 44
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.0 bits (56), Expect = 9.6
Identities = 12/79 (15%), Positives = 18/79 (22%), Gaps = 1/79 (1%)
Query: 70 IYGAVGGGKTMLMD-IFYESCETKQKQRVHFNKFMLDVHAKIHEVKKILARDKAKSYDPG 128
I G G GK+ +D + K V K A +
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 115
Query: 129 VPNRLDVMKEEEEKERERE 147
+ + RE
Sbjct: 116 IRPSPSSGTLGGVAAKTRE 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.381
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,595,308
Number of extensions: 76760
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 54
Length of query: 438
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,199,356
Effective search space: 419774600
Effective search space used: 419774600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)