RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3180
(346 letters)
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 68.4 bits (167), Expect = 6e-14
Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 17/164 (10%)
Query: 192 DIDGDRALTREEFASFLH-----------PEETAHMRDLVVV---ETMEDIDKDKDGKVS 237
D++ D ++ +F + + M+ + + D +KD VS
Sbjct: 19 DMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVS 78
Query: 238 LREYIGDMFR-GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDH 296
EY+ + +LP W +N D +GDG +D EE +N+ +F
Sbjct: 79 WEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYC--KNFQL 136
Query: 297 SDAEARHLIYESDSDADQKLTKDEILAKYDLFVGSQATDFGEAL 340
A+ + + Y + S A D G L
Sbjct: 137 QCADVPAVYNVITDGGKVTFDLNRYKELYYRLLTSPAADAGNTL 180
Score = 48.8 bits (116), Expect = 4e-07
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 17/147 (11%)
Query: 110 DIDGDRALTREEFASFLH-----------PEETAHMRDLVVV---ETMEDIDKDKDGKVS 155
D++ D ++ +F + + M+ + + D +KD VS
Sbjct: 19 DMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVS 78
Query: 156 LREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAH 215
EY+ + +A + NR + D+ GD + EEF ++ +
Sbjct: 79 WEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYC---KNFQ 135
Query: 216 MRDLVVVETMEDIDKDKDGKVSLREYI 242
++ V I L Y
Sbjct: 136 LQCADVPAVYNVITDGGKVTFDLNRYK 162
Score = 42.6 bits (100), Expect = 4e-05
Identities = 18/157 (11%), Positives = 45/157 (28%), Gaps = 26/157 (16%)
Query: 20 IDKDKDGFVSKEELKEWIQF---------------TQKRYIHNDVESQWRTHNPEDKEKI 64
+D + DG + + ++ + + + + ++ + + +
Sbjct: 18 LDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVV 77
Query: 65 TWDEYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFAS 124
+W+EY + + Q + D+ GD + EEF +
Sbjct: 78 SWEEYLAMWEKTIATCKSVADLPAWCQNRI--------PFLFKGMDVSGDGIVDLEEFQN 129
Query: 125 FLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
+ + ++ V I L Y E
Sbjct: 130 YC---KNFQLQCADVPAVYNVITDGGKVTFDLNRYKE 163
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 68.9 bits (168), Expect = 2e-13
Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 23/247 (9%)
Query: 16 IVDKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYG 75
I D D +G++ +EL ++ + K+ D + R + +D +
Sbjct: 16 IWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQ 75
Query: 76 FLDEVDAAELAKDEDQGFSYKNMLNRD-----KRRWDVADIDGDRALTREEFASFLH--- 127
+E+ L ++E+ ++ D + W D D ++ E +FL
Sbjct: 76 I-EELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLF 134
Query: 128 ----PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE---VDAAELAKDEDQGFSYKNM 180
+ + D M+ DK+KDG++ L + + L + + S
Sbjct: 135 LQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVER 194
Query: 181 LNRDKRRWDVADIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKD 233
++ + D+ AL E F+ P + D + D +KD
Sbjct: 195 KRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKD 254
Query: 234 GKVSLRE 240
GK+ E
Sbjct: 255 GKIQKSE 261
Score = 65.5 bits (159), Expect = 2e-12
Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 32/252 (12%)
Query: 103 KRRWDVADIDGDRALTREEFASFLH---------PEETAHMRDLVVVETMEDIDKDKDGK 153
+ W D D + + +E F + T + M D DG+
Sbjct: 14 LQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGR 73
Query: 154 VSLREYIEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGDRALTREEFASFLH-- 209
+ + E + + + N + W D D ++ E +FL
Sbjct: 74 LQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDL 133
Query: 210 -----PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNE 264
+ + D M+ DK+KDG++ L + + + ++ + E
Sbjct: 134 FLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVE 193
Query: 265 KEQ-----FAMYRDKNGDGFMDEEEVKNWI--------LPPDFDHSDAEARHLIYESDSD 311
+++ FA Y D + G ++ EV ++ D L+ D +
Sbjct: 194 RKRDFEKIFAHY-DVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMN 252
Query: 312 ADQKLTKDEILA 323
D K+ K E+
Sbjct: 253 KDGKIQKSELAL 264
Score = 40.4 bits (94), Expect = 4e-04
Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 23/185 (12%)
Query: 185 KRRWDVADIDGDRALTREEFASFLH---------PEETAHMRDLVVVETMEDIDKDKDGK 235
+ W D D + + +E F + T + M D DG+
Sbjct: 14 LQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGR 73
Query: 236 VSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFA---MYRDKNGDGFMDEEEVKN----- 287
+ + E + + + + +F D + G++ E+KN
Sbjct: 74 LQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDL 133
Query: 288 ---WILPPDFDHSDAEARHLIYESDSDADQKLTKDE---ILAKYDLFVGSQATDFGEALV 341
+ D ++ D + D +L ++ ILA + F+ D +
Sbjct: 134 FLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVE 193
Query: 342 RHDEF 346
R +F
Sbjct: 194 RKRDF 198
Score = 40.0 bits (93), Expect = 5e-04
Identities = 26/212 (12%), Positives = 63/212 (29%), Gaps = 18/212 (8%)
Query: 16 IVDKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYG 75
+ D DG + EEL I ++ ++ + + W +Y G
Sbjct: 62 FMSAYDATFDGRLQIEELANMILPQEENFLLIFRREA--PLDNSVEFMKIWRKYDADSSG 119
Query: 76 FLDEVD----AAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEET 131
++ + +L + + + D + D L + A L +E
Sbjct: 120 YISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQEN 179
Query: 132 AHMRDLVVVETMED-----------IDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNM 180
++ + + + D + G + E ++ + S ++
Sbjct: 180 FLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGF-VKDMMELVRPSISGGDL 238
Query: 181 LNRDKRRWDVADIDGDRALTREEFASFLHPEE 212
+ D++ D + + E A L +
Sbjct: 239 DKFRECLLTHCDMNKDGKIQKSELALCLGLKH 270
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 61.4 bits (149), Expect = 2e-11
Identities = 20/159 (12%), Positives = 49/159 (30%), Gaps = 17/159 (10%)
Query: 192 DIDGDRALTREEFASFLH--------------PEETAHMRDLVVVETMEDIDKDKDGKVS 237
D + D + ++F + E L+ + D+++D +V+
Sbjct: 23 DCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVT 82
Query: 238 LREYIGDMFR-GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDH 296
E++ + E LP+W+ D +GD +D+ E + +
Sbjct: 83 KEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYM--SYGI 140
Query: 297 SDAEARHLIYESDSDADQKLTKDEILAKYDLFVGSQATD 335
++ +T++ + + S
Sbjct: 141 PKSDCDAAFDTLSDGGKTMVTREIFARLWTEYFVSNDRG 179
Score = 55.6 bits (134), Expect = 2e-09
Identities = 18/150 (12%), Positives = 49/150 (32%), Gaps = 17/150 (11%)
Query: 110 DIDGDRALTREEFASFLH--------------PEETAHMRDLVVVETMEDIDKDKDGKVS 155
D + D + ++F + E L+ + D+++D +V+
Sbjct: 23 DCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVT 82
Query: 156 LREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAH 215
E++++ A + E + + +DV D GD + + E+++ +
Sbjct: 83 KEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYM---SYG 139
Query: 216 MRDLVVVETMEDIDKDKDGKVSLREYIGDM 245
+ + + V+ +
Sbjct: 140 IPKSDCDAAFDTLSDGGKTMVTREIFARLW 169
Score = 44.1 bits (104), Expect = 2e-05
Identities = 17/158 (10%), Positives = 49/158 (31%), Gaps = 26/158 (16%)
Query: 20 IDKDKDGFVSKEELKEWIQ-----------FTQKRYIHNDVESQWRTHNPE-DKEK---I 64
D + DG + ++ + I+ + ++ W D+ + +
Sbjct: 22 YDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQV 81
Query: 65 TWDEYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFAS 124
T +E+ + + V+ E + + +DV D GD + + E+++
Sbjct: 82 TKEEWLKMWAECVKSVEKGESLPEWLTKYM--------NFMFDVNDTSGDNIIDKHEYST 133
Query: 125 FLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
+ + + + V+ + +
Sbjct: 134 VYM---SYGIPKSDCDAAFDTLSDGGKTMVTREIFARL 168
Score = 31.3 bits (71), Expect = 0.30
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 16/110 (14%)
Query: 228 IDKDKDGKVSLREYIGDMFR-------GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFM 280
D + DG + ++ + + D E +K + Y D+N D +
Sbjct: 22 YDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQV 81
Query: 281 DEEE----VKNWILPPDFDHSDAEARHLIYES-----DSDADQKLTKDEI 321
+EE + + S E D+ D + K E
Sbjct: 82 TKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEY 131
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 59.9 bits (145), Expect = 1e-10
Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 14/198 (7%)
Query: 103 KRRWDVADIDGDRALTREEFASFLH-----PEETAHMRDLVVVETMEDIDKDKDGKVSLR 157
W D DG L +E + + ++ + ++ + DGK+ +
Sbjct: 19 FEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIV 78
Query: 158 EYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLH-------P 210
E V E + W D D + EE +FL
Sbjct: 79 ELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANK 138
Query: 211 EETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNE-KEQFA 269
++ D + DGK+ L E + + + E + F
Sbjct: 139 TVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFE 198
Query: 270 MYRDKNGDGFMDEEEVKN 287
+Y D++G+G++DE E+
Sbjct: 199 LY-DQDGNGYIDENELDA 215
Score = 49.5 bits (118), Expect = 4e-07
Identities = 39/239 (16%), Positives = 77/239 (32%), Gaps = 24/239 (10%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFL 77
D D G++ +EL+ I + + + +PE K + D+Y ++ G +
Sbjct: 23 LHFDADGSGYLEGKELQNLI-----QELLQARKKAGLELSPEMKTFV--DQYGQRDDGKI 75
Query: 78 DEVDAAELAKDEDQGFSYKNMLNRD-----KRRWDVADIDGDRALTREEFASFLH----- 127
V+ A + E+ + W D D + EE +FL
Sbjct: 76 GIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEK 135
Query: 128 --PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDK 185
++ D + DGK+ L E + + K
Sbjct: 136 ANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARL-LPVQENFLLKFQGIKMCGKEFN 194
Query: 186 RRWDVADIDGDRALTREEFASFLHP--EETAHMRDLVVVETMEDI--DKDKDGKVSLRE 240
+ +++ D DG+ + E + L E+ D+ + T + GK+ +
Sbjct: 195 KAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTD 253
Score = 49.1 bits (117), Expect = 6e-07
Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 19/191 (9%)
Query: 109 ADIDGDRALTREEFASFLHPEE----TAHMRDLVVVETMEDI----DKDKDGKVSLREYI 160
D + E A L EE + L E D D G + E
Sbjct: 67 YGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELK 126
Query: 161 EVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLV 220
+L + ++ + + D + D L E A L +E ++
Sbjct: 127 NF-LKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQG 185
Query: 221 VVETMEDI-------DKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRD 273
+ ++ D+D +G + E + + + E + + K+
Sbjct: 186 IKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKK---NIMA 242
Query: 274 KNGDGFMDEEE 284
+ G + +
Sbjct: 243 LSDGGKLYRTD 253
Score = 41.0 bits (96), Expect = 3e-04
Identities = 29/192 (15%), Positives = 49/192 (25%), Gaps = 19/192 (9%)
Query: 146 IDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFA 205
D D G + +E + L + G + K D D + E A
Sbjct: 25 FDADGSGYLEGKELQNLIQELLQARKKAGLELSPEM---KTFVDQYGQRDDGKIGIVELA 81
Query: 206 SFLHPEE----TAHMRDLVVVETMEDI----DKDKDGKVSLREYIGDMFRGGDTDGDEEL 257
L EE + L E D D G + E + +
Sbjct: 82 HVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVD 141
Query: 258 PDWVKNEKEQFAMYRDKNGDGFMDEEE--------VKNWILPPDFDHSDAEARHLIYESD 309
+ + D N DG ++ E + E D
Sbjct: 142 DTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYD 201
Query: 310 SDADQKLTKDEI 321
D + + ++E+
Sbjct: 202 QDGNGYIDENEL 213
Score = 36.0 bits (83), Expect = 0.013
Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 109 ADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDI-------DKDKDGKVSLREYIE 161
D + D L E A L +E ++ + ++ D+D +G + E
Sbjct: 156 FDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDA 215
Query: 162 VDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEE 212
+ +L + Q N+ + ++ + L R + A L +
Sbjct: 216 L-LKDLCEKNKQELDINNI---STYKKNIMALSDGGKLYRTDLALILSAGD 262
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 58.6 bits (142), Expect = 1e-10
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 11/148 (7%)
Query: 185 KRRWDVADIDGDRALTREEF---------ASFLHPEETAHMRDLVVVETMEDIDKDKDGK 235
K R D+ GD ++RE++ + L E+ R + + + +
Sbjct: 17 KTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQ-EFLRVADQLGLAPGVR 75
Query: 236 VSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFD 295
+S+ E + EE V + D + DG++ E K ++ D
Sbjct: 76 ISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCI-DTDKDGYVSLPEFKAFLQAVGPD 134
Query: 296 HSDAEARHLIYESDSDADQKLTKDEILA 323
+D +A D + + ++++DE L
Sbjct: 135 LTDDKAITCFNTLDFNKNGQISRDEFLV 162
Score = 55.5 bits (134), Expect = 2e-09
Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 14/165 (8%)
Query: 103 KRRWDVADIDGDRALTREEF---------ASFLHPEETAHMRDLVVVETMEDIDKDKDGK 153
K R D+ GD ++RE++ + L E+ R + + + +
Sbjct: 17 KTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQ-EFLRVADQLGLAPGVR 75
Query: 154 VSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEET 213
+S+ E L K + + + + +D D D D ++ EF +FL
Sbjct: 76 ISVEEAAVNATDSLLKMKGE--EKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQ-AVG 132
Query: 214 AHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELP 258
+ D + +D +K+G++S E++ +E
Sbjct: 133 PDLTDDKAITCFNTLDFNKNGQISRDEFL-VTVNDFLFGLEETAL 176
Score = 45.9 bits (109), Expect = 4e-06
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 10/148 (6%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFL 77
++D DGF+S+E+ + R S + + D+ +
Sbjct: 21 QRVDVTGDGFISREDYELIAV----RIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRI 76
Query: 78 D----EVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAH 133
V+A + + + +D D D D ++ EF +FL
Sbjct: 77 SVEEAAVNATDSLLKMKGEEKAM-AVIQSLIMYDCIDTDKDGYVSLPEFKAFLQ-AVGPD 134
Query: 134 MRDLVVVETMEDIDKDKDGKVSLREYIE 161
+ D + +D +K+G++S E++
Sbjct: 135 LTDDKAITCFNTLDFNKNGQISRDEFLV 162
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 59.1 bits (143), Expect = 2e-10
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 15/174 (8%)
Query: 96 KNMLNRDKRRWDVADIDGDRALTREEFASFLH---------PEETAHMRDLVVVETMEDI 146
ML+R +R+D D+D D + +E + E+ MRD V
Sbjct: 32 PKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRD-AVRVFFLHK 90
Query: 147 DKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRR--WDVADIDGDRALTREEF 204
+ + +++E + + ++ + L +DV D DGD + +E
Sbjct: 91 GVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDEL 150
Query: 205 ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELP 258
+ + + E D DK GK+ E + + D +
Sbjct: 151 KTMMK---AFDVPQEAAYTFFEKADTDKSGKLERTELVHLFRKFWMEPYDPQWD 201
Score = 58.3 bits (141), Expect = 3e-10
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 15/158 (9%)
Query: 178 KNMLNRDKRRWDVADIDGDRALTREEFASFLH---------PEETAHMRDLVVVETMEDI 228
ML+R +R+D D+D D + +E + E+ MRD V
Sbjct: 32 PKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRD-AVRVFFLHK 90
Query: 229 DKDKDGKVSLREYIGDMFRGGDTDGDEEL---PDWVKNEKEQFAMYRDKNGDGFMDEEEV 285
+ + +++ + + + E P + + D +GDG +D +E+
Sbjct: 91 GVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDEL 150
Query: 286 KNWILPPDFDHSDAEARHLIYESDSDADQKLTKDEILA 323
K + FD A ++D+D KL + E++
Sbjct: 151 KTMMK--AFDVPQEAAYTFFEKADTDKSGKLERTELVH 186
Score = 44.8 bits (106), Expect = 9e-06
Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 18/154 (11%)
Query: 18 DKIDKDKDGFVSKEELKEWIQF---------TQKRYIHNDVESQWRTHNPEDKEKITWDE 68
D D D DG + +E+ W Q + + V + E + ++
Sbjct: 43 DTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRED 102
Query: 69 YREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHP 128
+ E F + E + N +DV D DGD + +E + +
Sbjct: 103 WVEANRVFAEAERERERRGEPSLIALLSNSY------YDVLDDDGDGTVDVDELKTMMK- 155
Query: 129 EETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
+ E D DK GK+ E + +
Sbjct: 156 --AFDVPQEAAYTFFEKADTDKSGKLERTELVHL 187
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 57.5 bits (139), Expect = 3e-10
Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 16/153 (10%)
Query: 185 KRRWDVADIDGDRALTREEFASFLH-----------PEETAHMRDLVVV---ETMEDIDK 230
K+R+D D DG+ AL R +F E +++ ++
Sbjct: 10 KKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGV 69
Query: 231 DKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWIL 290
DG ++ ++I G+ + + DKN DG ++ +E W+
Sbjct: 70 GSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLT 129
Query: 291 PPDFDHSDAEARHLIYESDSDADQKLTKDEILA 323
S AEA + D++ + +L+ DE+L
Sbjct: 130 --ALGMSKAEAAEAFNQVDTNGNGELSLDELLT 160
Score = 55.1 bits (133), Expect = 2e-09
Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 18/170 (10%)
Query: 103 KRRWDVADIDGDRALTREEFASFLH-----------PEETAHMRDLVVV---ETMEDIDK 148
K+R+D D DG+ AL R +F E +++ ++
Sbjct: 10 KKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGV 69
Query: 149 DKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFL 208
DG ++ ++I V L ++ + + + K + D + D + +EFA++L
Sbjct: 70 GSDGSLTEEQFIRV-TENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL 128
Query: 209 HPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELP 258
M E +D + +G++SL E + + D EL
Sbjct: 129 ---TALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHFGRLDVELL 175
Score = 42.0 bits (99), Expect = 6e-05
Identities = 25/152 (16%), Positives = 60/152 (39%), Gaps = 13/152 (8%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKV---- 73
D+ D D +G + + + ++ Q + + + ++ +T ++ +D ++
Sbjct: 14 DRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTL--KNAFGGLFDYLAKEAGVGS 71
Query: 74 YGFLDEVD----AAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPE 129
G L E L ++ + + + K + D + D + +EFA++L
Sbjct: 72 DGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL--- 128
Query: 130 ETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
M E +D + +G++SL E +
Sbjct: 129 TALGMSKAEAAEAFNQVDTNGNGELSLDELLT 160
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 55.9 bits (135), Expect = 1e-09
Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 17/163 (10%)
Query: 185 KRRWDVADIDGDRALTREEFASFLH--------------PEETAHMRDLVVVETMEDIDK 230
R+ D DG+ + R +F+ + + + D+
Sbjct: 7 AARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADR 66
Query: 231 DKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWIL 290
D D +++ E++ + D + D +GDG + + +
Sbjct: 67 DGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVA-DTDGDGAVTVADTARALT 125
Query: 291 PPDFDHSDAEARHLIYESDSDADQKLTKDEILAKYDLFVGSQA 333
F + AR D+D D K+ + EI+ + + A
Sbjct: 126 --AFGVPEDLARQAAAALDTDGDGKVGETEIVPAFARYFTVPA 166
Score = 48.6 bits (116), Expect = 4e-07
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 19/157 (12%)
Query: 103 KRRWDVADIDGDRALTREEFASFLH--------------PEETAHMRDLVVVETMEDIDK 148
R+ D DG+ + R +F+ + + + D+
Sbjct: 7 AARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADR 66
Query: 149 DKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFL 208
D D +++ E++ A + +D+ F+ + VAD DGD A+T + A L
Sbjct: 67 DGDQRITREEFVTG-AVKRLRDKPDRFA-EMARPFLHAALGVADTDGDGAVTVADTARAL 124
Query: 209 HPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDM 245
+ + + + +D D DGKV E +
Sbjct: 125 ---TAFGVPEDLARQAAAALDTDGDGKVGETEIVPAF 158
Score = 38.2 bits (89), Expect = 0.001
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 14/152 (9%)
Query: 18 DKIDKDKDGFVSKEELKEWIQ-FTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKV--- 73
D+D +G + + + + + + + + + W
Sbjct: 11 TTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEAL---WQGLAGIADRD 67
Query: 74 -YGFLD--EVDAAELAKDEDQGFSYKNMLNRDKRR-WDVADIDGDRALTREEFASFLHPE 129
+ E + + D+ + M VAD DGD A+T + A L
Sbjct: 68 GDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARAL--- 124
Query: 130 ETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
+ + + + +D D DGKV E +
Sbjct: 125 TAFGVPEDLARQAAAALDTDGDGKVGETEIVP 156
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 56.7 bits (137), Expect = 3e-09
Identities = 29/212 (13%), Positives = 65/212 (30%), Gaps = 33/212 (15%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
+ G + ++ L + + + + + ++ D G++S + V
Sbjct: 132 AVSGSGKFSFQDLKQVLA-KYADTIPEGPLKKLFVMVENDTKGRMSYITLVAV------- 183
Query: 170 DEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDID 229
+ L + D + + L+R+EF + V D
Sbjct: 184 -----ANDLAAL---VADFRKIDTNSNGTLSRKEFREHFV--RLGFDKKSVQDALFRYAD 233
Query: 230 KDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI 289
+D+ V EY+ + +A D + G + +EEV+ +
Sbjct: 234 EDESDDVGFSEYVHLGLCLLV-------------LRILYAFA-DFDKSGQLSKEEVQKVL 279
Query: 290 LPPDF-DHSDAEARHLIYESDSDADQKLTKDE 320
+ + + H D D + L+ E
Sbjct: 280 EDAHIPESARKKFEHQFSVVDVDDSKSLSYQE 311
Score = 52.1 bits (125), Expect = 7e-08
Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 44/227 (19%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFL 77
G S ++LK+ + ++ + + K ++++ V L
Sbjct: 129 LSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITL-VAVANDL 187
Query: 78 DEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDL 137
+ A + D + + L+R+EF +
Sbjct: 188 AALVAD----------------------FRKIDTNSNGTLSRKEFREHFV--RLGFDKKS 223
Query: 138 VVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRR--WDVADIDG 195
V D+D+ V EY+ + L R + AD D
Sbjct: 224 VQDALFRYADEDESDDVGFSEYVHL-----------------GLCLLVLRILYAFADFDK 266
Query: 196 DRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
L++EE L +D D +S +E++
Sbjct: 267 SGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFV 313
Score = 45.6 bits (108), Expect = 1e-05
Identities = 25/220 (11%), Positives = 62/220 (28%), Gaps = 31/220 (14%)
Query: 103 KRRWDVADIDGDRALTREEFASFL--HPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 160
K + D E A A + ++D++ D G LR
Sbjct: 54 KAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPS- 112
Query: 161 EVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLV 220
L++++ ++ + + + G + ++ L + + +
Sbjct: 113 ---KPMLSEEDTNIL---------RQLFLSSAVSGSGKFSFQDLKQVLA-KYADTIPEGP 159
Query: 221 VVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFM 280
+ + ++ D G++S + + + F D N +G +
Sbjct: 160 LKKLFVMVENDTKGRMSYITLVAVA-------------NDLAALVADFRKI-DTNSNGTL 205
Query: 281 DEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+E + + L +D D + E
Sbjct: 206 SRKEFRE-HFVRLGFDKKSVQDALFRYADEDESDDVGFSE 244
Score = 33.6 bits (77), Expect = 0.083
Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 14/141 (9%)
Query: 185 KRRWDVADIDGDRALTREEFASFL--HPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
K + D E A A + ++D++ D G LR
Sbjct: 54 KAKLAEYDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRPS- 112
Query: 243 GDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEAR 302
+E+ ++ F +G G +++K + + +
Sbjct: 113 ------KPMLSEEDTNIL----RQLFLSS-AVSGSGKFSFQDLKQVLAKYADTIPEGPLK 161
Query: 303 HLIYESDSDADQKLTKDEILA 323
L ++D +++ ++A
Sbjct: 162 KLFVMVENDTKGRMSYITLVA 182
Score = 30.9 bits (70), Expect = 0.50
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
D D L++EE L +D D +S +E++
Sbjct: 263 DFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVM 314
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 55.2 bits (133), Expect = 3e-09
Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 21/142 (14%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
LT EF F + + + V + E D +KDG + EY+
Sbjct: 25 TECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYV--------- 75
Query: 170 DEDQGFSYKNMLNRD---KRRWDVADIDGDRALTREEFASFL------HPEETAHMRDLV 220
S D + + + D+DG+ + R E + + + A +
Sbjct: 76 ---AALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEF 132
Query: 221 VVETMEDIDKDKDGKVSLREYI 242
+ ID + DG++SL E++
Sbjct: 133 TNMVFDKIDINGDGELSLEEFM 154
Score = 52.1 bits (125), Expect = 3e-08
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
LT EF F + + + V + E D +KDG + EY+ +
Sbjct: 25 TECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKG 84
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI-------LPPDFDHSDAEARHL 304
D++L + F +Y D +G+G +D E+ N I + ++ +
Sbjct: 85 KVDQKL-------RWYFKLY-DVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMV 136
Query: 305 IYESDSDADQKLTKDE 320
+ D + D +L+ +E
Sbjct: 137 FDKIDINGDGELSLEE 152
Score = 38.2 bits (89), Expect = 0.002
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 106 WDVADIDGDRALTREEFASFL------HPEETAHMRDLVVVETMEDIDKDKDGKVSLREY 159
+ + D+DG+ + R E + + + A + + ID + DG++SL E+
Sbjct: 94 FKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEF 153
Query: 160 IE 161
+E
Sbjct: 154 ME 155
Score = 28.2 bits (63), Expect = 3.2
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 9 DKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
+ + + D + DG +S EE E +Q
Sbjct: 125 EAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQ 158
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 55.9 bits (135), Expect = 8e-09
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 31/154 (20%)
Query: 110 DIDGDRALTREEFASFLH----------PEETAHMRDLVVVETMEDIDKDKDGKVSLREY 159
D +GD L R E A + V + ++ +D DK+G + E+
Sbjct: 345 DKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEF 404
Query: 160 IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVA----DIDGDRALTREEFASFLHPEETAH 215
+ + K +L+ + R + A D D ++ E A+ +
Sbjct: 405 V---TVAM--------DRKTLLS--RERLERAFRMFDSDNSGKISSTELATIFGVSD--- 448
Query: 216 MRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGG 249
+ + ++DK+ DG+V E+ M
Sbjct: 449 VDSETWKSVLSEVDKNNDGEVDFDEFQ-QMLLKL 481
Score = 47.8 bits (114), Expect = 3e-06
Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 33/155 (21%)
Query: 19 KIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPE--------DKEKITWDEYR 70
K+DK+ DG + + EL E + + + E D +K + EY
Sbjct: 343 KMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYS 402
Query: 71 EKVYGFLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVA----DIDGDRALTREEFASFL 126
E F+ + K +L+ + R + A D D ++ E A+
Sbjct: 403 E----FV----TVAM--------DRKTLLS--RERLERAFRMFDSDNSGKISSTELATIF 444
Query: 127 HPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
+ + + ++DK+ DG+V E+ +
Sbjct: 445 GVSD---VDSETWKSVLSEVDKNNDGEVDFDEFQQ 476
Score = 46.2 bits (110), Expect = 9e-06
Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 34/171 (19%)
Query: 124 SFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNR 183
+ET + +DK+ DG++ E IE + +ML+
Sbjct: 327 KLTSQDETKELT-----AIFHKMDKNGDGQLDRAELIEG----YKELMRMKGQDASMLDA 377
Query: 184 DKRRWDV------ADIDGDRALTREEF-ASFLHPEETAHMRDLVVVETMEDIDKDKDGKV 236
+V D D + + EF + + + + D D GK+
Sbjct: 378 SAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDRKT--LLSRERLERAFRMFDSDNSGKI 435
Query: 237 SLREYIGDMFRGGDTDG---DEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
S E + +F D D L + DKN DG +D +E
Sbjct: 436 SSTE-LATIFGVSDVDSETWKSVLSEV------------DKNNDGEVDFDE 473
Score = 45.1 bits (107), Expect = 2e-05
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 20/139 (14%)
Query: 192 DIDGDRALTREEFASFLH----------PEETAHMRDLVVVETMEDIDKDKDGKVSLREY 241
D +GD L R E A + V + ++ +D DK+G + E+
Sbjct: 345 DKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEF 404
Query: 242 IGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEA 301
+ E L + F M+ D + G + E+ D
Sbjct: 405 VTVAMDRKTLLSRERL-------ERAFRMF-DSDNSGKISSTELATIF--GVSDVDSETW 454
Query: 302 RHLIYESDSDADQKLTKDE 320
+ ++ E D + D ++ DE
Sbjct: 455 KSVLSEVDKNNDGEVDFDE 473
Score = 27.4 bits (61), Expect = 9.0
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 12/70 (17%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKN-----------WILPPDFDHSDAEARHLIYESDSDAD 313
F DKNGDG +D E+ D + E ++ D D +
Sbjct: 338 TAIFHKM-DKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKN 396
Query: 314 QKLTKDEILA 323
+ E +
Sbjct: 397 GYIEYSEFVT 406
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 55.5 bits (134), Expect = 1e-08
Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 28/156 (17%)
Query: 110 DIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
D +GD L R+E + V + D D++G + E++
Sbjct: 356 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFV-- 413
Query: 163 DAAELAKDEDQGFSYKNMLNRDKRRWDVA----DIDGDRALTREEFASFLHPEETAHMRD 218
+ K++L+ K + + A D DG+ ++ +E AS + H+
Sbjct: 414 -TVAM--------DRKSLLS--KDKLESAFQKFDQDGNGKISVDELASVFGLD---HLES 459
Query: 219 LVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGD 254
E + ID + DG V E+ M + ++ +
Sbjct: 460 KTWKEMISGIDSNNDGDVDFEEFC-KMIQKLCSNNE 494
Score = 48.2 bits (115), Expect = 2e-06
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 19 KIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFLD 78
IDK+ DG + ++EL + + +V + + I G++D
Sbjct: 354 HIDKNGDGQLDRQELIDGY----SKLSGEEVAVFDLPQIESEVDAI-LGAADFDRNGYID 408
Query: 79 --EVDAAELAKDEDQGFSYKNMLNRDKRRWDVA----DIDGDRALTREEFASFLHPEETA 132
E + K++L+ K + + A D DG+ ++ +E AS +
Sbjct: 409 YSEFVTVAM--------DRKSLLS--KDKLESAFQKFDQDGNGKISVDELASVFGLD--- 455
Query: 133 HMRDLVVVETMEDIDKDKDGKVSLREYIE 161
H+ E + ID + DG V E+ +
Sbjct: 456 HLESKTWKEMISGIDSNNDGDVDFEEFCK 484
Score = 45.1 bits (107), Expect = 2e-05
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 128 PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRR 187
EET + + IDK+ DG++ +E I+ ++L+ +E F + +
Sbjct: 342 QEETKELT-----DIFRHIDKNGDGQLDRQELIDG-YSKLSGEEVAVFDLPQIESEVDAI 395
Query: 188 WDVADIDGDRALTREEF-ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMF 246
AD D + + EF + + + + + D+D +GK+S+ E + +F
Sbjct: 396 LGAADFDRNGYIDYSEFVTVAMDRKSL--LSKDKLESAFQKFDQDGNGKISVDE-LASVF 452
Query: 247 RGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
+ + + + D N DG +D EE
Sbjct: 453 GLDHLE-SKTWKEMISGI--------DSNNDGDVDFEE 481
Score = 43.1 bits (102), Expect = 8e-05
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 17/136 (12%)
Query: 192 DIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGD 244
D +GD L R+E + V + D D++G + E++
Sbjct: 356 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTV 415
Query: 245 MFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHL 304
++L + F + D++G+G + +E+ + + +
Sbjct: 416 AMDRKSLLSKDKL-------ESAFQKF-DQDGNGKISVDELASVF--GLDHLESKTWKEM 465
Query: 305 IYESDSDADQKLTKDE 320
I DS+ D + +E
Sbjct: 466 ISGIDSNNDGDVDFEE 481
Score = 34.7 bits (80), Expect = 0.047
Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 210 PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFA 269
EET + + IDK+ DG++ +E I + + +++E +
Sbjct: 342 QEETKELT-----DIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAIL 396
Query: 270 MYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYES----DSDADQKLTKDEI 321
D + +G++D E + D ++ + + D D + K++ DE+
Sbjct: 397 GAADFDRNGYIDYSE----FVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL 448
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 55.1 bits (133), Expect = 1e-08
Identities = 23/149 (15%), Positives = 58/149 (38%), Gaps = 24/149 (16%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVET-------MEDIDKDKDGKVSLREYIEV 162
D +GD L ++E + + ++++D DK+G + E+I
Sbjct: 365 DKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFI-- 422
Query: 163 DAAELAKDEDQGFSYKNMLNRDKRR--WDVADIDGDRALTREEFASFLHPEETAHMRDLV 220
+ + + + + ++ R +++ D D +T+EE A+ + +
Sbjct: 423 -SVCM--------DKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTS---ISEKT 470
Query: 221 VVETMEDIDKDKDGKVSLREYIGDMFRGG 249
+ + + D++KD + E++ M
Sbjct: 471 WNDVLGEADQNKDNMIDFDEFV-SMMHKI 498
Score = 47.8 bits (114), Expect = 3e-06
Identities = 24/153 (15%), Positives = 63/153 (41%), Gaps = 32/153 (20%)
Query: 19 KIDKDKDGFVSKEELKE--------WIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYR 70
K+DK+ DG + K+EL E + + + + +V++ + + + I + E
Sbjct: 363 KLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSE-- 420
Query: 71 EKVYGFLDEVDAAELAKDEDQGFSYKNMLNRDKRR--WDVADIDGDRALTREEFASFLHP 128
F+ + + + + + ++ R +++ D D +T+EE A+
Sbjct: 421 -----FI----SVCM--------DKQILFSEERLRRAFNLFDTDKSGKITKEELANLFGL 463
Query: 129 EETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
+ + + + + D++KD + E++
Sbjct: 464 TS---ISEKTWNDVLGEADQNKDNMIDFDEFVS 493
Score = 47.0 bits (112), Expect = 5e-06
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 19/162 (11%)
Query: 124 SFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNR 183
EE + + + +DK+ DG++ +E IE L +++ KN+
Sbjct: 347 KLTTLEERKELT-----DIFKKLDKNGDGQLDKKELIEG-YNVLRNFKNELGELKNVEEE 400
Query: 184 DKRRWDVADIDGDRALTREEF-ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
D D + + EF + + + + + D DK GK++ E +
Sbjct: 401 VDNILKEVDFDKNGYIEYSEFISVCMDKQI--LFSEERLRRAFNLFDTDKSGKITKEE-L 457
Query: 243 GDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
++F ++ D + D+N D +D +E
Sbjct: 458 ANLFGLTSIS-EKTWNDVLGEA--------DQNKDNMIDFDE 490
Score = 43.9 bits (104), Expect = 5e-05
Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 17/136 (12%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVET-------MEDIDKDKDGKVSLREYIGD 244
D +GD L ++E + + ++++D DK+G + E+I
Sbjct: 365 DKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISV 424
Query: 245 MFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHL 304
D+++ + + F ++ D + G + +EE+ N S+ +
Sbjct: 425 CM-------DKQILFSEERLRRAFNLF-DTDKSGKITKEELANLF--GLTSISEKTWNDV 474
Query: 305 IYESDSDADQKLTKDE 320
+ E+D + D + DE
Sbjct: 475 LGEADQNKDNMIDFDE 490
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 55.1 bits (133), Expect = 1e-08
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 32/157 (20%)
Query: 110 DIDGDRALTREEFASFLH-------------PEETAHMRDLVVVETMEDIDKDKDGKVSL 156
D + D L R+E H + + + M +D D G +
Sbjct: 341 DTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEY 400
Query: 157 REYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVA----DIDGDRALTREEFASFLHPEE 212
E+I A+ + +L+ + R + A D DG ++ +E +
Sbjct: 401 SEFI---ASAI--------DRTILLS--RERMERAFKMFDKDGSGKISTKELFKLFSQAD 447
Query: 213 TAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGG 249
++ ++ + +E +D +KDG+V E++ +M +
Sbjct: 448 SS-IQMEELESIIEQVDNNKDGEVDFNEFV-EMLQNF 482
Score = 50.8 bits (122), Expect = 3e-07
Identities = 28/150 (18%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 19 KIDKDKDGFVSKEELKE-WIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFL 77
K+D + DG + ++EL + +F + + + ++ Q ED+ G +
Sbjct: 339 KLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSI 398
Query: 78 D--EVDAAELAKDEDQGFSYKNMLNRDKRRWDVA----DIDGDRALTREEFASFLHPEET 131
+ E A+ + +L+ + R + A D DG ++ +E ++
Sbjct: 399 EYSEFIASAI--------DRTILLS--RERMERAFKMFDKDGSGKISTKELFKLFSQADS 448
Query: 132 AHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
+ ++ + +E +D +KDG+V E++E
Sbjct: 449 S-IQMEELESIIEQVDNNKDGEVDFNEFVE 477
Score = 48.1 bits (115), Expect = 2e-06
Identities = 30/167 (17%), Positives = 56/167 (33%), Gaps = 21/167 (12%)
Query: 124 SFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV-----DAAELAKDEDQGFSYK 178
+ET + E +D + DG + E + + +
Sbjct: 323 KLTTLDETKQLT-----EIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGS 377
Query: 179 NMLNRDKRRWDVADIDGDRALTREEF-ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVS 237
+ ++ + D+DG ++ EF AS + + + + DKD GK+S
Sbjct: 378 TIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDRTI--LLSRERMERAFKMFDKDGSGKIS 435
Query: 238 LREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
+E + + EEL ++ D N DG +D E
Sbjct: 436 TKELFKLFSQADSSIQMEELESIIE--------QVDNNKDGEVDFNE 474
Score = 46.6 bits (111), Expect = 7e-06
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 21/142 (14%)
Query: 192 DIDGDRALTREEFASFLH-------------PEETAHMRDLVVVETMEDIDKDKDGKVSL 238
D + D L R+E H + + + M +D D G +
Sbjct: 341 DTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEY 400
Query: 239 REYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSD 298
E+I E + + F M+ DK+G G + +E+ D
Sbjct: 401 SEFIASAIDRTILLSRERM-------ERAFKMF-DKDGSGKISTKELFKLFSQADSSIQM 452
Query: 299 AEARHLIYESDSDADQKLTKDE 320
E +I + D++ D ++ +E
Sbjct: 453 EELESIIEQVDNNKDGEVDFNE 474
Score = 28.5 bits (64), Expect = 3.6
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 24/92 (26%)
Query: 4 IVDKIDKDKDGLI------------------------VDKIDKDKDGFVSKEELKEWIQF 39
++ +D D G I DKD G +S +EL +
Sbjct: 386 LMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQ 445
Query: 40 TQKRYIHNDVESQWRTHNPEDKEKITWDEYRE 71
++ES + ++ ++E+ E
Sbjct: 446 ADSSIQMEELESIIEQVDNNKDGEVDFNEFVE 477
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 52.0 bits (125), Expect = 3e-08
Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 17/153 (11%)
Query: 103 KRRWDVADIDGDRALTREEFASFLH----------PEETAHMRDLVVVETMEDIDKDKDG 152
K ++ D D D A+TR +F S M L V
Sbjct: 9 KTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGK 68
Query: 153 KVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEE 212
+ +I E+ K+ + + L + D + D ++R+E+ F
Sbjct: 69 GIDETTFINS-MKEMVKNPEAKSVVEGPL---PLFFRAVDTNEDNNISRDEYGIFF---G 121
Query: 213 TAHMRDLVVVETMEDIDKDKDGKVSLREYIGDM 245
+ + + + ID + DG +SL E++
Sbjct: 122 MLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154
Score = 50.1 bits (120), Expect = 1e-07
Identities = 24/149 (16%), Positives = 40/149 (26%), Gaps = 15/149 (10%)
Query: 185 KRRWDVADIDGDRALTREEFASFLH----------PEETAHMRDLVVVETMEDIDKDKDG 234
K ++ D D D A+TR +F S M L V
Sbjct: 9 KTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGK 68
Query: 235 KVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDF 294
+ +I M + + F D N D + +E +
Sbjct: 69 GIDETTFINSMKEMVKNPEAKSV--VEGPLPLFFRAV-DTNEDNNISRDEYGIFFG--ML 123
Query: 295 DHSDAEARHLIYESDSDADQKLTKDEILA 323
A D++ D L+ +E +
Sbjct: 124 GLDKTMAPASFDAIDTNNDGLLSLEEFVI 152
Score = 46.6 bits (111), Expect = 2e-06
Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 10/147 (6%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKV--YG 75
++ID DKDG +++ + + + R+ D WD + V
Sbjct: 13 NRIDFDKDGAITRMDFESMAE----RFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGK 68
Query: 76 FLDEVDAAELAKDEDQGFSYKNMLNRDKRR-WDVADIDGDRALTREEFASFLHPEETAHM 134
+DE K+ + K+++ + D + D ++R+E+ F +
Sbjct: 69 GIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF---GMLGL 125
Query: 135 RDLVVVETMEDIDKDKDGKVSLREYIE 161
+ + + ID + DG +SL E++
Sbjct: 126 DKTMAPASFDAIDTNNDGLLSLEEFVI 152
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 52.2 bits (125), Expect = 3e-08
Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 26/147 (17%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
L+ EEF D + DG + RE+I
Sbjct: 36 RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFI--------- 86
Query: 170 DEDQGFSYKNMLNRD---KRRWDVADIDGDRALTREEFASFL-----------HPEETAH 215
S + + K + + D+DG+ +++ E + E
Sbjct: 87 ---IALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDES 143
Query: 216 MRDLVVVETMEDIDKDKDGKVSLREYI 242
+ + +D ++DGK+SL E+I
Sbjct: 144 TPEKRTEKIFRQMDTNRDGKLSLEEFI 170
Score = 47.9 bits (114), Expect = 9e-07
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
L+ EEF D + DG + RE+I +
Sbjct: 36 RDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRG 95
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI------------LPPDFDHSDA 299
+++L K F+MY D +G+G++ + E+ + +P D +
Sbjct: 96 KLEQKL-------KWAFSMY-DLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEK 147
Query: 300 EARHLIYESDSDADQKLTKDE 320
+ + D++ D KL+ +E
Sbjct: 148 RTEKIFRQMDTNRDGKLSLEE 168
Score = 36.7 bits (85), Expect = 0.005
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 106 WDVADIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKV 154
+ + D+DG+ +++ E + E + + +D ++DGK+
Sbjct: 105 FSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKL 164
Query: 155 SLREYIEV 162
SL E+I
Sbjct: 165 SLEEFIRG 172
Score = 28.7 bits (64), Expect = 1.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 8 IDKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
D+ +KI D ++DG +S EE +
Sbjct: 140 EDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAK 174
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 51.0 bits (122), Expect = 8e-08
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 18/140 (12%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
T EF + L + + + + D +KDG V E+I
Sbjct: 30 MEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVN----- 84
Query: 170 DEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEF-----ASFLHPEETAHMRDLVVV 222
K +W + D DG+ ++ + E A + + +
Sbjct: 85 ------LIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFIN 138
Query: 223 ETMEDIDKDKDGKVSLREYI 242
ID + DG+++L E+I
Sbjct: 139 LVFHKIDINNDGELTLEEFI 158
Score = 48.6 bits (116), Expect = 6e-07
Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 14/135 (10%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
T EF + L + + + + D +KDG V E+I +
Sbjct: 30 MEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQE 89
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKN------WILPPDFDHSDAEARHLI 305
+++L K F +Y D +G+G +D+ E+ + + + +
Sbjct: 90 KMEQKL-------KWYFKLY-DADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVF 141
Query: 306 YESDSDADQKLTKDE 320
++ D + D +LT +E
Sbjct: 142 HKIDINNDGELTLEE 156
Score = 36.7 bits (85), Expect = 0.006
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 96 KNMLNRDKRRW--DVADIDGDRALTREEF-----ASFLHPEETAHMRDLVVVETMEDIDK 148
K +W + D DG+ ++ + E A + + + ID
Sbjct: 87 MQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDI 146
Query: 149 DKDGKVSLREYIE 161
+ DG+++L E+I
Sbjct: 147 NNDGELTLEEFIN 159
Score = 27.1 bits (60), Expect = 6.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 16 IVDKIDKDKDGFVSKEELKEWIQ 38
+ KID + DG ++ EE +
Sbjct: 140 VFHKIDINNDGELTLEEFINGMA 162
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 49.4 bits (118), Expect = 2e-07
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 26/147 (17%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
L + EF D DK+G + +E+I
Sbjct: 36 KDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFI--------- 86
Query: 170 DEDQGFSY-KNMLNRDKRRW--DVADIDGDRALTREEFASFL-----------HPEETAH 215
S DK W + D+D + ++ +E + E
Sbjct: 87 ---CALSVTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDED 143
Query: 216 MRDLVVVETMEDIDKDKDGKVSLREYI 242
+ V + +DK+KDG+++L E+
Sbjct: 144 TPEKRVNKIFNMMDKNKDGQLTLEEFC 170
Score = 44.0 bits (104), Expect = 1e-05
Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 20/141 (14%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
L + EF D DK+G + +E+I +
Sbjct: 36 KDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRG 95
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI------------LPPDFDHSDA 299
+ +++L F +Y D + +G + +E+ + LP D D +
Sbjct: 96 ELNDKL-------IWAFQLY-DLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEK 147
Query: 300 EARHLIYESDSDADQKLTKDE 320
+ D + D +LT +E
Sbjct: 148 RVNKIFNMMDKNKDGQLTLEE 168
Score = 36.7 bits (85), Expect = 0.005
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 106 WDVADIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKV 154
+ + D+D + ++ +E + E + V + +DK+KDG++
Sbjct: 105 FQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQL 164
Query: 155 SLREYIEV 162
+L E+ E
Sbjct: 165 TLEEFCEG 172
Score = 29.4 bits (66), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 9 DKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
D+D V+KI DK+KDG ++ EE E +
Sbjct: 141 DEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSK 174
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 49.8 bits (119), Expect = 2e-07
Identities = 29/178 (16%), Positives = 66/178 (37%), Gaps = 19/178 (10%)
Query: 76 FLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMR 135
L + + E+ ++ GFS + + R R+ D + L+RE+F
Sbjct: 8 LLRDEELEEIK--KETGFS-HSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGD 64
Query: 136 DLVVVETMEDIDKDKDGKVSLREYIEV-----DAAELAKDEDQGFSYKNMLNRDKRRW-- 188
+ + + + +V+ R ++ + K +D +K +
Sbjct: 65 RI-----INAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAF 119
Query: 189 DVADIDGDRALTREEFASFL----HPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ D+D D ++R+E L + + T+++ D+D D +S E++
Sbjct: 120 RLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFV 177
Score = 44.4 bits (105), Expect = 2e-05
Identities = 26/164 (15%), Positives = 61/164 (37%), Gaps = 21/164 (12%)
Query: 171 EDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDK 230
++ GFS + + R R+ D + L+RE+F + +
Sbjct: 19 KETGFS-HSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRI-----INAFFS 72
Query: 231 DKDGKVSLREYIGDM--FRGGDTDGDEELPDWVKNEKEQ-------FAMYRDKNGDGFMD 281
+ + +V+ R ++ + FR + + + + + + F +Y D + D +
Sbjct: 73 EGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLY-DLDKDDKIS 131
Query: 282 EEEVKNWI-----LPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+E+ + + + + A I E+D D D ++ E
Sbjct: 132 RDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTE 175
Score = 38.6 bits (90), Expect = 0.001
Identities = 22/150 (14%), Positives = 58/150 (38%), Gaps = 13/150 (8%)
Query: 19 KIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFLD 78
+DK ++G +S+E+ + + + + + +++ + + + F
Sbjct: 37 SLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGE----DQVNFRGFMRTLAHFRP 92
Query: 79 EVDAAELAKDEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFL----HPEETA 132
D + +D +K + + D+D D ++R+E L +
Sbjct: 93 IEDNEK---SKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISD 149
Query: 133 HMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
+ T+++ D+D D +S E+++V
Sbjct: 150 EQLGSIADRTIQEADQDGDSAISFTEFVKV 179
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 49.5 bits (118), Expect = 3e-07
Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 26/147 (17%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
+ + E F D D +G VS ++I
Sbjct: 75 NECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFI--------- 125
Query: 170 DEDQGFSY-KNMLNRDKRRW--DVADIDGDRALTREEFASFL-----------HPEETAH 215
+G S ++K W ++ DI+ D +T+EE + +P
Sbjct: 126 ---KGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKED 182
Query: 216 MRDLVVVETMEDIDKDKDGKVSLREYI 242
V + +DK+KDG V++ E+I
Sbjct: 183 APRQHVETFFQKMDKNKDGVVTIDEFI 209
Score = 41.8 bits (98), Expect = 1e-04
Identities = 25/141 (17%), Positives = 40/141 (28%), Gaps = 20/141 (14%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
+ + E F D D +G VS ++I +
Sbjct: 75 NECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRG 134
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEV------------KNWILPPDFDHSDA 299
E+L F +Y D N DG++ +EE+ K D
Sbjct: 135 TVQEKL-------NWAFNLY-DINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQ 186
Query: 300 EARHLIYESDSDADQKLTKDE 320
+ D + D +T DE
Sbjct: 187 HVETFFQKMDKNKDGVVTIDE 207
Score = 37.2 bits (86), Expect = 0.004
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 106 WDVADIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKV 154
+++ DI+ D +T+EE + +P V + +DK+KDG V
Sbjct: 144 FNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVV 203
Query: 155 SLREYIEV 162
++ E+IE
Sbjct: 204 TIDEFIES 211
Score = 29.1 bits (65), Expect = 1.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 6 DKIDKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
+ +D V+ DK+KDG V+ +E E Q
Sbjct: 177 PVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQ 213
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 49.4 bits (118), Expect = 3e-07
Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 21/142 (14%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
I D + +EEF L R+L + D ++G + E++
Sbjct: 49 SIIDDGLIHKEEFQLALFRNRNR--RNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPS 106
Query: 170 DEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFL-------HPEETAHMRDLV 220
+K ++ + D+ + REE + + M +++
Sbjct: 107 AP----------VHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVM 156
Query: 221 VVETMEDIDKDKDGKVSLREYI 242
V + D+ DGK+ + E+
Sbjct: 157 VDKAFVQADRKNDGKIDIDEWK 178
Score = 44.0 bits (104), Expect = 2e-05
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 21/139 (15%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIG--DMFRGG 249
I D + +EEF L R+L + D ++G + E++ +F
Sbjct: 49 SIIDDGLIHKEEFQLALFRNRNR--RNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPS 106
Query: 250 DTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI--------LPPDFDHSDAEA 301
E++ K F +Y D GF++ EE+K + L D +
Sbjct: 107 -APVHEKV-------KFAFKLY-DLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMV 157
Query: 302 RHLIYESDSDADQKLTKDE 320
++D D K+ DE
Sbjct: 158 DKAFVQADRKNDGKIDIDE 176
Score = 37.4 bits (87), Expect = 0.003
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 110 DIDGDRALTREEFASFL-------HPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
D+ + REE + + M +++V + D+ DGK+ + E+ +
Sbjct: 121 DLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDF 180
Score = 29.0 bits (65), Expect = 1.6
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 185 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVS---LREY 241
R +DV D+ + + EF L + V + D + G + L+E
Sbjct: 77 DRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEM 136
Query: 242 IGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI 289
+ + + E++ + + ++ A D+ DG +D +E K+++
Sbjct: 137 VVALLHESELVLSEDMIEVMVDKAFVQA---DRKNDGKIDIDEWKDFV 181
Score = 27.4 bits (61), Expect = 5.0
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 6 DKIDKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
+ +D ++VDK D+ DG + +E K+++
Sbjct: 146 LVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVS 182
Score = 27.4 bits (61), Expect = 6.2
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 103 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
R +DV D+ + + EF L + V + D + G + E E+
Sbjct: 77 DRIFDVFDVKRNGVIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEM 136
Query: 163 DAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFL 208
A L + E S + + + AD D + +E+ F+
Sbjct: 137 VVALLHESELV-LSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFV 181
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 47.9 bits (114), Expect = 1e-06
Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 21/142 (14%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
+ D + +EEF L L + D +G + E+ +
Sbjct: 60 AVIDDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN 117
Query: 170 DEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFL-------HPEETAHMRDLV 220
DK + + D+ + R+E + + + +
Sbjct: 118 AP----------IDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDI 167
Query: 221 VVETMEDIDKDKDGKVSLREYI 242
+ +T E+ D DGK+ E+
Sbjct: 168 IDKTFEEADTKHDGKIDKEEWR 189
Score = 41.0 bits (96), Expect = 3e-04
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 21/139 (15%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIG--DMFRGG 249
+ D + +EEF L L + D +G + E+ +F
Sbjct: 60 AVIDDGLINKEEFQLALFKTNKK--ESLFADRVFDLFDTKHNGILGFEEFARALSVFHPN 117
Query: 250 DTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI--------LPPDFDHSDAEA 301
D+++ F +Y D GF++ +EVK + + +
Sbjct: 118 -APIDDKI-------HFSFQLY-DLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDII 168
Query: 302 RHLIYESDSDADQKLTKDE 320
E+D+ D K+ K+E
Sbjct: 169 DKTFEEADTKHDGKIDKEE 187
Score = 36.0 bits (83), Expect = 0.010
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 100 NRDKRRW--DVADIDGDRALTREEFASFL-------HPEETAHMRDLVVVETMEDIDKDK 150
DK + + D+ + R+E + + + ++ +T E+ D
Sbjct: 120 IDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKH 179
Query: 151 DGKVSLREYIEV 162
DGK+ E+ +
Sbjct: 180 DGKIDKEEWRSL 191
Score = 28.6 bits (64), Expect = 2.4
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Query: 104 RRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVD 163
R +D+ D + L EEFA L D + + + D + G + +E ++
Sbjct: 89 RVFDLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMV 148
Query: 164 AAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFL 208
A LA+ + + + ++ AD D + +EE+ S +
Sbjct: 149 VATLAES-GMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 47.2 bits (112), Expect = 4e-06
Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 41/219 (18%)
Query: 118 TREEFASFLH--------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
+E F E LV ++ ID +DG + + +L +
Sbjct: 249 YIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNTRDQLTE 308
Query: 170 DEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLH-------PEETAHMRDLVVV 222
++ F K + + D DGD +T +E + + E M
Sbjct: 309 EQIAEF---------KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDM------ 353
Query: 223 ETMEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMD 281
+ ++D D +G + E++ M R DTD +EE+ +E F ++ DK+G+G++
Sbjct: 354 --INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI-------REAFRVF-DKDGNGYIS 403
Query: 282 EEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E+++ + +D E +I E+D D D ++ +E
Sbjct: 404 AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 442
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 45.7 bits (108), Expect = 5e-06
Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 28/149 (18%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
+T+++F S D + DG + +EY+
Sbjct: 44 KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYV--------- 94
Query: 170 DEDQGFSYKNMLNRDKRR---WDVADIDGDRALTREEF-------------ASFLHPEET 213
+++ + + D+DG+ +++ E +
Sbjct: 95 ---IALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDD 151
Query: 214 AHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ + + + K+ D K++ +E+I
Sbjct: 152 ENTPEKRAEKIWKYFGKNDDDKLTEKEFI 180
Score = 42.7 bits (100), Expect = 6e-05
Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 22/143 (15%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
+T+++F S D + DG + +EY+ +
Sbjct: 44 KDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAG 103
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKN--------------WILPPDFDHS 297
+++L F++Y D +G+G + + EV +LP D +
Sbjct: 104 KTNQKLEWA-------FSLY-DVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTP 155
Query: 298 DAEARHLIYESDSDADQKLTKDE 320
+ A + + D KLT+ E
Sbjct: 156 EKRAEKIWKYFGKNDDDKLTEKE 178
Score = 34.2 bits (78), Expect = 0.032
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 106 WDVADIDGDRALTREEF-------------ASFLHPEETAHMRDLVVVETMEDIDKDKDG 152
+ + D+DG+ +++ E + + + + + K+ D
Sbjct: 113 FSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDD 172
Query: 153 KVSLREYIE 161
K++ +E+IE
Sbjct: 173 KLTEKEFIE 181
Score = 29.6 bits (66), Expect = 1.3
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 16 IVDKIDKDKDGFVSKEELKEWIQ 38
I K+ D ++++E E
Sbjct: 162 IWKYFGKNDDDKLTEKEFIEGTL 184
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 45.2 bits (107), Expect = 7e-06
Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 20/144 (13%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
+ + E F D + G V +++ +
Sbjct: 29 NEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSI---- 84
Query: 170 DEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFL-----------HPEETAHMRD 218
+ + + +++ DI+ D + +EE + +P
Sbjct: 85 -----LLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPR 139
Query: 219 LVVVETMEDIDKDKDGKVSLREYI 242
V + +DK+KDG V+L E++
Sbjct: 140 QHVDVFFQKMDKNKDGIVTLDEFL 163
Score = 37.9 bits (88), Expect = 0.002
Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 20/141 (14%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
+ + E F D + G V +++ +
Sbjct: 29 NEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRG 88
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEV------------KNWILPPDFDHSDA 299
E+L + F +Y D N DG++++EE+ K D
Sbjct: 89 TVHEKL-------RWTFNLY-DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQ 140
Query: 300 EARHLIYESDSDADQKLTKDE 320
+ D + D +T DE
Sbjct: 141 HVDVFFQKMDKNKDGIVTLDE 161
Score = 34.8 bits (80), Expect = 0.019
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 110 DIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 158
DI+ D + +EE + +P V + +DK+KDG V+L E
Sbjct: 102 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 161
Query: 159 YIEV 162
++E
Sbjct: 162 FLES 165
Score = 27.5 bits (61), Expect = 5.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 6 DKIDKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
+ +D VD DK+KDG V+ +E E Q
Sbjct: 131 PVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQ 167
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 45.0 bits (107), Expect = 7e-06
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 20/139 (14%)
Query: 192 DIDGDRALTREEFASFLH---PEETAHMRDLV-------VVETMEDIDKDKDGKVSLREY 241
D +GD L R+E + + DL V ++ +D D++G + E+
Sbjct: 50 DNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEF 109
Query: 242 IGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEA 301
+ E L F + D +G G + EE+ + + D
Sbjct: 110 VTVCMDKQLLLSRERL-------LAAFQQF-DSDGSGKITNEELGR-LF-GVTEVDDETW 159
Query: 302 RHLIYESDSDADQKLTKDE 320
++ E D + D ++ +E
Sbjct: 160 HQVLQECDKNNDGEVDFEE 178
Score = 44.6 bits (106), Expect = 1e-05
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 22/152 (14%)
Query: 110 DIDGDRALTREEFASFLH---PEETAHMRDLV-------VVETMEDIDKDKDGKVSLREY 159
D +GD L R+E + + DL V ++ +D D++G + E+
Sbjct: 50 DNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYSEF 109
Query: 160 IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDL 219
+ V + + R + D DG +T EE E + D
Sbjct: 110 VTVCMDKQLLLSRE---------RLLAAFQQFDSDGSGKITNEELGRLFGVTE---VDDE 157
Query: 220 VVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
+ +++ DK+ DG+V E++ M + D
Sbjct: 158 TWHQVLQECDKNNDGEVDFEEFVEMMQKICDV 189
Score = 35.3 bits (82), Expect = 0.012
Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 33/156 (21%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFL 77
++D + DG + ++EL E +K + + E V L
Sbjct: 47 RQLDNNGDGQLDRKELIEGY---RKLMQWKGDTVSDLDSSQIEAE----------VDHIL 93
Query: 78 DEVDAAELAKDEDQGFSY---------KNMLNRDKRRWD---VADIDGDRALTREEFASF 125
VD D + Y K +L +R D DG +T EE
Sbjct: 94 QSVD-----FDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRL 148
Query: 126 LHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
E + D + +++ DK+ DG+V E++E
Sbjct: 149 FGVTE---VDDETWHQVLQECDKNNDGEVDFEEFVE 181
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 44.8 bits (106), Expect = 1e-05
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 17/139 (12%)
Query: 192 DIDGDRALTREEFASFLH----PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFR 247
+ L EF F E T ++ + D + D + EY+ +
Sbjct: 33 EECPSGTLFMHEFKRFFKVPDNEEATQYVEAM-----FRAFDTNGDNTIDFLEYVAALNL 87
Query: 248 GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYE 307
+ +L K F +Y DK+ +G +D +E+ + + +
Sbjct: 88 VLRGTLEHKL-------KWTFKIY-DKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQ 139
Query: 308 SDSDADQKLTKDEILAKYD 326
+ D I D
Sbjct: 140 QGKLLTPEEVVDRIFLLVD 158
Score = 44.8 bits (106), Expect = 1e-05
Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 40/156 (25%)
Query: 110 DIDGDRALTREEFASFLH----PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAA 165
+ L EF F E T ++ + D + D + EY+
Sbjct: 33 EECPSGTLFMHEFKRFFKVPDNEEATQYVEAM-----FRAFDTNGDNTIDFLEYV----- 82
Query: 166 ELAKDEDQGFSYKNMLNR-DKRRW--DVADIDGDRALTREEFASFLH------------- 209
+ K +W + D D + + R+E +
Sbjct: 83 -------AALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEV 135
Query: 210 ---PEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ + VV +D++ DG++SL E++
Sbjct: 136 EAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFV 171
Score = 31.7 bits (72), Expect = 0.24
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 16/68 (23%)
Query: 110 DIDGDRALTREEFASFLH----------------PEETAHMRDLVVVETMEDIDKDKDGK 153
D D + + R+E + + + VV +D++ DG+
Sbjct: 105 DKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQ 164
Query: 154 VSLREYIE 161
+SL E++E
Sbjct: 165 LSLNEFVE 172
Score = 27.9 bits (62), Expect = 4.3
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 16 IVDKIDKDKDGFVSKEELKEWIQ 38
I +D++ DG +S E E +
Sbjct: 153 IFLLVDENGDGQLSLNEFVEGAR 175
Score = 27.5 bits (61), Expect = 5.2
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDEILA 323
+E + + ++ G + E K + PD + + + D++ D + E +A
Sbjct: 25 QEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVA 83
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 45.0 bits (106), Expect = 1e-05
Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 24/146 (16%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
+ + E F D + G V +++ +
Sbjct: 62 NECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALS----- 116
Query: 170 DEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFL-----------HPEETAHM 216
+K RW ++ DI+ D + +EE + +P
Sbjct: 117 ------ILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDT 170
Query: 217 RDLVVVETMEDIDKDKDGKVSLREYI 242
V + +DK+KDG V+L E++
Sbjct: 171 PRQHVDVFFQKMDKNKDGIVTLDEFL 196
Score = 37.7 bits (87), Expect = 0.003
Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 20/141 (14%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
+ + E F D + G V +++ +
Sbjct: 62 NECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRG 121
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI------------LPPDFDHSDA 299
E+L + F +Y D N DG++++EE+ + + D
Sbjct: 122 TVHEKL-------RWTFNLY-DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQ 173
Query: 300 EARHLIYESDSDADQKLTKDE 320
+ D + D +T DE
Sbjct: 174 HVDVFFQKMDKNKDGIVTLDE 194
Score = 36.9 bits (85), Expect = 0.006
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 110 DIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 158
DI+ D + +EE + +P V + +DK+KDG V+L E
Sbjct: 135 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDE 194
Query: 159 YIEV 162
++E
Sbjct: 195 FLES 198
Score = 30.7 bits (69), Expect = 0.47
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Query: 185 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVS---LREY 241
++ D ++ E+F + L + + + T D +KDG ++ + +
Sbjct: 92 HYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRW-TFNLYDINKDGYINKEEMMDI 150
Query: 242 IGDMFRGGDTDGDEELPDWVKNEK-EQFAMYRDKNGDGFMDEEEVKNWI 289
+ ++ L + + + F DKN DG + +E
Sbjct: 151 VKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 199
Score = 28.8 bits (64), Expect = 2.2
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 6 DKIDKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
+ +D VD DK+KDG V+ +E E Q
Sbjct: 164 PVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQ 200
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 44.4 bits (105), Expect = 1e-05
Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 20/144 (13%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
L F D++KDG++ E+I+ +
Sbjct: 36 KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSV---- 91
Query: 170 DEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFL-----------HPEETAHMRD 218
S + + + + + D+D D +TR E + E + +
Sbjct: 92 -----TSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPE 146
Query: 219 LVVVETMEDIDKDKDGKVSLREYI 242
V +DK+ DGK++L+E+
Sbjct: 147 KRVDRIFAMMDKNADGKLTLQEFQ 170
Score = 39.4 bits (92), Expect = 6e-04
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 20/141 (14%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
L F D++KDG++ E+I +
Sbjct: 36 KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRG 95
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVK------------NWILPPDFDHSDA 299
DE+L F +Y D + DG++ E+ LP + + +
Sbjct: 96 TLDEKLRWA-------FKLY-DLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEK 147
Query: 300 EARHLIYESDSDADQKLTKDE 320
+ D +AD KLT E
Sbjct: 148 RVDRIFAMMDKNADGKLTLQE 168
Score = 37.5 bits (87), Expect = 0.003
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 106 WDVADIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKV 154
+ + D+D D +TR E + E + + V +DK+ DGK+
Sbjct: 105 FKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKL 164
Query: 155 SLREYIEV 162
+L+E+ E
Sbjct: 165 TLQEFQEG 172
Score = 29.0 bits (65), Expect = 1.5
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 7 KIDKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
+++ VD+I DK+ DG ++ +E +E +
Sbjct: 139 PEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSK 174
Score = 29.0 bits (65), Expect = 1.6
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 5/132 (3%)
Query: 162 VDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVV 221
+DAA K Q F + + ++V D + D + EF L + + +
Sbjct: 43 LDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLR 102
Query: 222 VETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFA----MYRDKNGD 277
+ D D DG ++ E + + G+ +N E+ DKN D
Sbjct: 103 W-AFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNAD 161
Query: 278 GFMDEEEVKNWI 289
G + +E +
Sbjct: 162 GKLTLQEFQEGS 173
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 44.7 bits (105), Expect = 2e-05
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 26/147 (17%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
+ + + F D D +G + +++
Sbjct: 102 NECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFV--------- 152
Query: 170 DEDQGFSYKNMLNRD---KRRWDVADIDGDRALTREEFASFL-----------HPEETAH 215
G S K +++ DI+ D +T+EE + + +P
Sbjct: 153 ---VGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILRED 209
Query: 216 MRDLVVVETMEDIDKDKDGKVSLREYI 242
V + +D+++DG V++ E++
Sbjct: 210 APLEHVERFFQKMDRNQDGVVTIDEFL 236
Score = 38.1 bits (88), Expect = 0.002
Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 20/141 (14%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
+ + + F D D +G + +++ +
Sbjct: 102 NECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRG 161
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI------------LPPDFDHSDA 299
E+L K F +Y D N DG + +EE+ + D
Sbjct: 162 TVHEKL-------KWAFNLY-DINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLE 213
Query: 300 EARHLIYESDSDADQKLTKDE 320
+ D + D +T DE
Sbjct: 214 HVERFFQKMDRNQDGVVTIDE 234
Score = 35.8 bits (82), Expect = 0.013
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 106 WDVADIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKV 154
+++ DI+ D +T+EE + + +P V + +D+++DG V
Sbjct: 171 FNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVV 230
Query: 155 SLREYIEV 162
++ E++E
Sbjct: 231 TIDEFLET 238
Score = 31.9 bits (72), Expect = 0.26
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 185 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVS---LREY 241
++ D DG+ A+ E+F L + + + D +KDG ++ +
Sbjct: 132 HFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHE-KLKWAFNLYDINKDGCITKEEMLAI 190
Query: 242 IGDMFRGGDTDGDEELPDWVKNEK-EQFAMYRDKNGDGFMDEEEVKNWI 289
+ ++ L + E E+F D+N DG + +E
Sbjct: 191 MKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETC 239
Score = 28.5 bits (63), Expect = 2.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 16 IVDKIDKDKDGFVSKEELKEWIQ 38
K+D+++DG V+ +E E Q
Sbjct: 218 FFQKMDRNQDGVVTIDEFLETCQ 240
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 43.3 bits (103), Expect = 2e-05
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
D D +T EE + L A++++ +++ M+ D D G + +E+I
Sbjct: 37 DADKSGQITFEELKAGLK-RVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKI 95
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSD 311
+ ++ L F + DK+G G++ +E++ +F D L+ + D D
Sbjct: 96 EREDHL-------FAAFTYF-DKDGSGYITPDELQQACE--EFGVEDVRIEELMRDVDQD 145
Query: 312 ADQKLTKDE 320
D ++ +E
Sbjct: 146 NDGRIDYNE 154
Score = 34.0 bits (79), Expect = 0.032
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
D D +T EE + L A++++ +++ M+ D D G + +E+I
Sbjct: 37 DADKSGQITFEELKAGLK-RVGANLKESEILDLMQAADVDNSGTIDYKEFIAATLHLNKI 95
Query: 170 DEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDID 229
+ + + D DG +T +E + D+ + E M D+D
Sbjct: 96 EREDHL---------FAAFTYFDKDGSGYITPDELQQACE---EFGVEDVRIEELMRDVD 143
Query: 230 KDKDGKVSLREYIGDMFRGGDTDG 253
+D DG++ E++ M + G G
Sbjct: 144 QDNDGRIDYNEFV-AMMQKGSITG 166
Score = 32.5 bits (75), Expect = 0.10
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 42/152 (27%)
Query: 123 ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAA---ELAKDEDQGFSYKN 179
A L EE A ++ E ID DK G+++ E L + E +
Sbjct: 18 AESLSEEEIAGLK-----EMFNMIDADKSGQITFEELKAGLKRVGANLKESE-----ILD 67
Query: 180 MLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMED----IDKDKDGK 235
++ AD+D + +EF + T H+ + + + DKD G
Sbjct: 68 LMQA-------ADVDNSGTIDYKEFIAA-----TLHLNKIEREDHLFAAFTYFDKDGSGY 115
Query: 236 VSLRE-------------YIGDMFRGGDTDGD 254
++ E I ++ R D D D
Sbjct: 116 ITPDELQQACEEFGVEDVRIEELMRDVDQDND 147
Score = 27.1 bits (61), Expect = 6.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 18 DKIDKDKDGFVSKEELKE 35
+ ID DK G ++ EELK
Sbjct: 34 NMIDADKSGQITFEELKA 51
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 43.3 bits (102), Expect = 3e-05
Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 26/147 (17%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
L RE+F + DKD +G + E+I
Sbjct: 36 RDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFI--------- 86
Query: 170 DEDQGFSYKNMLNRD---KRRWDVADIDGDRALTREEFASFL-----------HPEETAH 215
S + + +++ D++ D +T +E + + E
Sbjct: 87 ---TVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEA 143
Query: 216 MRDLVVVETMEDIDKDKDGKVSLREYI 242
++ V + + +DK++DG ++L E+
Sbjct: 144 TPEMRVKKIFKLMDKNEDGYITLDEFR 170
Score = 41.0 bits (96), Expect = 2e-04
Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 20/141 (14%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
L RE+F + DKD +G + E+I +
Sbjct: 36 RDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRG 95
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI------------LPPDFDHSDA 299
+E+L F +Y D N DG++ +E+ + L D +
Sbjct: 96 TLEEKL-------SWAFELY-DLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEM 147
Query: 300 EARHLIYESDSDADQKLTKDE 320
+ + D + D +T DE
Sbjct: 148 RVKKIFKLMDKNEDGYITLDE 168
Score = 37.1 bits (86), Expect = 0.004
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 106 WDVADIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKV 154
+++ D++ D +T +E + + E ++ V + + +DK++DG +
Sbjct: 105 FELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYI 164
Query: 155 SLREYIEV 162
+L E+ E
Sbjct: 165 TLDEFREG 172
Score = 28.7 bits (64), Expect = 2.2
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 8 IDKDKDGLIVDKI----DKDKDGFVSKEELKEWIQ 38
D+ + V KI DK++DG+++ +E +E +
Sbjct: 140 EDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSK 174
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 43.0 bits (102), Expect = 4e-05
Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 29/186 (15%)
Query: 110 DIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
D D +T +E L E + M+ D DK G + E+I
Sbjct: 20 DTDNSGTITFDELKDGLKRVGSELMESEIKDL--------MDAADIDKSGTIDYGEFIAA 71
Query: 163 DAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVV 222
+ ++ + D DG +T +E + D+ +
Sbjct: 72 TVHLNKLEREENL---------VSAFSYFDKDGSGYITLDEIQQACKDF---GLDDIHID 119
Query: 223 ETMEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMD 281
+ +++ID+D DG++ E+ M + G+ N ++ + D + ++
Sbjct: 120 DMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLV-DNGSNQVIE 178
Query: 282 EEEVKN 287
+
Sbjct: 179 GYFKHH 184
Score = 41.4 bits (98), Expect = 1e-04
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 25/136 (18%)
Query: 192 DIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGD 244
D D +T +E L E + M+ D DK G + E+I
Sbjct: 20 DTDNSGTITFDELKDGLKRVGSELMESEIKDL--------MDAADIDKSGTIDYGEFIAA 71
Query: 245 MFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHL 304
+ +E L F+ + DK+G G++ +E++ DF D +
Sbjct: 72 TVHLNKLEREENL-------VSAFSYF-DKDGSGYITLDEIQQ--ACKDFGLDDIHIDDM 121
Query: 305 IYESDSDADQKLTKDE 320
I E D D D ++ E
Sbjct: 122 IKEIDQDNDGQIDYGE 137
Score = 33.3 bits (77), Expect = 0.066
Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 47/185 (25%)
Query: 123 ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAA---ELAKDEDQGFSYKN 179
A L EE ++ E + ID D G ++ E + EL + E + +
Sbjct: 1 AERLSEEEIGGLK-----ELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIK-----D 50
Query: 180 MLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDI----DKDKDGK 235
+++ ADID + EF + T H+ L E + DKD G
Sbjct: 51 LMDA-------ADIDKSGTIDYGEFIAA-----TVHLNKLEREENLVSAFSYFDKDGSGY 98
Query: 236 VSLRE-------------YIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDE 282
++L E +I DM + D D D ++ + E AM R + G+G +
Sbjct: 99 ITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQI-----DYGEFAAMMRKRKGNGGIGR 153
Query: 283 EEVKN 287
++
Sbjct: 154 RTMRK 158
Score = 30.7 bits (70), Expect = 0.43
Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 27/148 (18%)
Query: 109 ADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDI----DKDKDGKVSLREYIEVDA 164
ADID + EF + T H+ L E + DKD G ++L E +
Sbjct: 55 ADIDKSGTIDYGEFIAA-----TVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQA-C 108
Query: 165 AELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLH---PEETAHMRDLVV 221
+ D+ +M+ D D D + EFA+ + R +
Sbjct: 109 KDFGLDDIH---IDDMIKE-------IDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRK 158
Query: 222 VETMED----IDKDKDGKVSLREYIGDM 245
+ D +D + +
Sbjct: 159 TLNLRDALGLVDNGSNQVIEGYFKHHHH 186
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 42.8 bits (101), Expect = 4e-05
Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 29/199 (14%)
Query: 76 FLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMR 135
D + + GFS + L R R+ D + L+R + +
Sbjct: 8 AAVIPDGDSIR--RETGFS-QASLLRLHHRFRALDRNKKGYLSRMDLQQ---------IG 55
Query: 136 DLVVVETMEDI----DKDKDGKVSLREYIEV------DAAELAKDEDQGFSYKNMLNRDK 185
L V + I D +V ++ V E + +D R+K
Sbjct: 56 ALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNK 115
Query: 186 RRW--DVADIDGDRALTREEFASFLH----PEETAHMRDLVVVETMEDIDKDKDGKVSLR 239
+ + D+D D ++R E L + T + + T+++ D+D DG VS
Sbjct: 116 LHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFV 175
Query: 240 EYIGDMFRGGDTDGDEELP 258
E+ D + +
Sbjct: 176 EFT-KSLEKMDVEQKMSIR 193
Score = 39.4 bits (92), Expect = 7e-04
Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 29/155 (18%)
Query: 185 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDI----DKDKDGKVSLRE 240
R+ D + L+R + + L V + I D +V
Sbjct: 32 HHRFRALDRNKKGYLSRMDLQQ---------IGALAVNPLGDRIIESFFPDGSQRVDFPG 82
Query: 241 YIGDM--FRGGDTDGDEELPDWVKNE--------KEQFAMYRDKNGDGFMDEEEVKNWI- 289
++ + FR + + E F +Y D + DG + E+ +
Sbjct: 83 FVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLY-DLDRDGKISRHEMLQVLR 141
Query: 290 ----LPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+ + + A + E+D D D ++ E
Sbjct: 142 LMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVE 176
Score = 35.5 bits (82), Expect = 0.012
Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 14/152 (9%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQ---KRYIHNDVESQWRTHNPEDKEKITWDEYREKVY 74
+D++K G++S+ +L++ I P+ +++ + + +
Sbjct: 36 RALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESF-------FPDGSQRVDFPGFVRVLA 88
Query: 75 GFLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLH----PEE 130
F D +D + + N+ + + D+D D ++R E L +
Sbjct: 89 HFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQV 148
Query: 131 TAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
T + + T+++ D+D DG VS E+ +
Sbjct: 149 TEEQLENIADRTVQEADEDGDGAVSFVEFTKS 180
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 41.9 bits (99), Expect = 9e-05
Identities = 17/122 (13%), Positives = 47/122 (38%), Gaps = 14/122 (11%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
D + + +L+ E + L ++ + ++ +D + G ++ E++ +R +
Sbjct: 49 DTNHNGSLSHREIYTVLASVG---IKKWDINRILQALDINDRGNITYTEFMAGCYRWKNI 105
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSD 311
+ L K F DK+ DG++ + ++ + + D + + + S
Sbjct: 106 E-STFL-------KAAFNKI-DKDEDGYISKSDIVSLVH--DKVLDNNDIDNFFLSVHSI 154
Query: 312 AD 313
Sbjct: 155 KK 156
Score = 38.4 bits (90), Expect = 0.001
Identities = 16/131 (12%), Positives = 44/131 (33%), Gaps = 16/131 (12%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
D + + +L+ E + L ++ + ++ +D + G ++ E++
Sbjct: 49 DTNHNGSLSHREIYTVLASVG---IKKWDINRILQALDINDRGNITYTEFMAG-CYRWKN 104
Query: 170 DEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDID 229
E K ++ D D D +++ + S +H + + + + +
Sbjct: 105 IEST---------FLKAAFNKIDKDEDGYISKSDIVSLVHDK---VLDNNDIDNFFLSVH 152
Query: 230 KDKDGKVSLRE 240
K G
Sbjct: 153 SIKKGIPREHI 163
Score = 30.0 bits (68), Expect = 0.73
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAE 166
D D D +++ + S +H + + + + + K G ++ E
Sbjct: 118 DKDEDGYISKSDIVSLVHDK---VLDNNDIDNFFLSVHSIKKGIPREHIINKISFQE 171
Score = 26.9 bits (60), Expect = 7.5
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 23/58 (39%)
Query: 1 MRLIVDKIDKDKDGLI-----------------------VDKIDKDKDGFVSKEELKE 35
+ I+ +D + G I +KIDKD+DG++SK ++
Sbjct: 75 INRILQALDINDRGNITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVS 132
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 40.6 bits (96), Expect = 1e-04
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 30/139 (21%)
Query: 192 DIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGD 244
D++GD A++ EE +F+ + + + ID D +G++ E+
Sbjct: 10 DVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLI--------FKSIDADGNGEIDQNEFAKF 61
Query: 245 MFR---GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEA 301
+D L K + + D +GDG + +EEV + H +
Sbjct: 62 YGSIQGQDLSDDKIGL-------KVLYKLM-DVDGDGKLTKEEVTS-FFK---KHGIEKV 109
Query: 302 RHLIYESDSDADQKLTKDE 320
+ ++D++ D +T +E
Sbjct: 110 AEQVMKADANGDGYITLEE 128
Score = 34.0 bits (79), Expect = 0.019
Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 38/130 (29%)
Query: 146 IDKDKDGKVSLREYIEVDAA---ELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTRE 202
ID + DG VS E + + + + D DG+ + +
Sbjct: 9 IDVNGDGAVSYEEVKAFVSKKRAIKNEQL-----LQLIFKS-------IDADGNGEIDQN 56
Query: 203 EFASFLHPEETAHMRDLVVVETMEDI-------DKDKDGKVSLRE-----------YIGD 244
EFA F ++ + + + D D DGK++ E + +
Sbjct: 57 EFAKF-----YGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAE 111
Query: 245 MFRGGDTDGD 254
D +GD
Sbjct: 112 QVMKADANGD 121
Score = 34.0 bits (79), Expect = 0.023
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 26/138 (18%)
Query: 110 DIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
D++GD A++ EE +F+ + + + ID D +G++ E+ +
Sbjct: 10 DVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLI--------FKSIDADGNGEIDQNEFAKF 61
Query: 163 DAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVV 222
+ + +D + K + + D+DGD LT+EE SF V
Sbjct: 62 YGS--IQGQDLSDDKIGL----KVLYKLMDVDGDGKLTKEEVTSFF-----KKHGIEKVA 110
Query: 223 ETMEDIDKDKDGKVSLRE 240
E + D + DG ++L E
Sbjct: 111 EQVMKADANGDGYITLEE 128
Score = 26.7 bits (60), Expect = 5.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 18 DKIDKDKDGFVSKEELKE 35
+ID + DG VS EE+K
Sbjct: 7 KEIDVNGDGAVSYEEVKA 24
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 41.5 bits (98), Expect = 1e-04
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 28/140 (20%)
Query: 192 DIDGDRALTREEFASFLH------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDM 245
D DG +T+E+ L P + ++ ID D GK+ E+I
Sbjct: 62 DEDGKGYITKEQLKKGLEKDGLKLPYNFDLL--------LDQIDSDGSGKIDYTEFIAAA 113
Query: 246 FRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKN-----WILPPDFDHSDAE 300
+ + F ++ D + DG + E+ +
Sbjct: 114 LDR-KQLSKKLI-------YCAFRVF-DVDNDGEITTAELAHILYNGNKKGNITQRDVNR 164
Query: 301 ARHLIYESDSDADQKLTKDE 320
+ +I + D + D K+ E
Sbjct: 165 VKRMIRDVDKNNDGKIDFHE 184
Score = 38.0 bits (89), Expect = 0.002
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 32/143 (22%)
Query: 110 DIDGDRALTREEFASFLH------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVD 163
D DG +T+E+ L P + ++ ID D GK+ E+I
Sbjct: 62 DEDGKGYITKEQLKKGLEKDGLKLPYNFDLL--------LDQIDSDGSGKIDYTEFIAA- 112
Query: 164 AAELAKDEDQGFSYKNMLNRDKRR--WDVADIDGDRALTREE----FASFLHPEETAHMR 217
+ L++ + V D+D D +T E +
Sbjct: 113 -----------ALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRD 161
Query: 218 DLVVVETMEDIDKDKDGKVSLRE 240
V + D+DK+ DGK+ E
Sbjct: 162 VNRVKRMIRDVDKNNDGKIDFHE 184
Score = 31.8 bits (73), Expect = 0.20
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 30/167 (17%)
Query: 123 ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLN 182
A + + ++ T +D+D G ++ + + + K + +L+
Sbjct: 43 AQQSNDYDVEKLK-----STFLVLDEDGKGYITKEQLKKGLEKDGLKLPYN---FDLLLD 94
Query: 183 RDKRRWDVADIDGDRALTREEF---ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLR 239
+ D DG + EF A + V D D DG+++
Sbjct: 95 Q-------IDSDGSGKIDYTEFIAAALDRKQLSKKLIYCAFRV-----FDVDNDGEITTA 142
Query: 240 EYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYR--DKNGDGFMDEEE 284
E ++ G + M R DKN DG +D E
Sbjct: 143 ELAHILYNGNKKGNITQRDVNRVKR-----MIRDVDKNNDGKIDFHE 184
Score = 28.4 bits (64), Expect = 2.8
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 18 DKIDKDKDGFVSKEELKE 35
+D+D G+++KE+LK+
Sbjct: 59 LVLDEDGKGYITKEQLKK 76
Score = 27.2 bits (61), Expect = 5.5
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 23/58 (39%)
Query: 1 MRLIVDKIDKDKDGLI---------VDK--------------IDKDKDGFVSKEELKE 35
L++D+ID D G I +D+ D D DG ++ EL
Sbjct: 89 FDLLLDQIDSDGSGKIDYTEFIAAALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAH 146
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 41.8 bits (98), Expect = 1e-04
Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 9/159 (5%)
Query: 2 RLIVDKIDKDKDGL--IVDKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPE 59
+ +K + K + K DK++ G + +E+ + ++ S+ R
Sbjct: 37 AIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCL---EVLKLDEFTSRVRDITKR 93
Query: 60 DKEKITWDEYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTR 119
+K + + G D V+ E + + + +D D G+ +
Sbjct: 94 AFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFEL----TVMFDEIDASGNMLVDE 149
Query: 120 EEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 158
EEF + E + +++DK+ G V+ E
Sbjct: 150 EEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDE 188
Score = 40.3 bits (94), Expect = 4e-04
Identities = 25/161 (15%), Positives = 44/161 (27%), Gaps = 19/161 (11%)
Query: 106 WDVADIDGDRALTREEFASFLH---------PEETAHMRDLVVVETMEDIDKDKDGKVSL 156
+ D + L +E S + + G
Sbjct: 54 FKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDF 113
Query: 157 REYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHM 216
E++E L D +D D G+ + EEF + E
Sbjct: 114 VEFLEF-RLMLCYIYDF--------FELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGA 164
Query: 217 RDLVVVETMEDIDKDKDGKVSLREYIGDMFRGG-DTDGDEE 256
+ +++DK+ G V+ E+ D DGD +
Sbjct: 165 KVEDPAALFKELDKNGTGSVTFDEFAAWASAVKLDADGDPD 205
Score = 38.3 bits (89), Expect = 0.001
Identities = 33/174 (18%), Positives = 55/174 (31%), Gaps = 18/174 (10%)
Query: 120 EEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKN 179
E + E+TA + +E + DK++ GK+ E L DE
Sbjct: 32 ERIRQAIPREKTAEAKQ-RRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDI 90
Query: 180 MLNR-DKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMED----IDKDKDG 234
DK R + ++ + EF F + + + ID +
Sbjct: 91 TKRAFDKSRTLGSKLENKGSEDFVEFLEF-----RLMLCYIYDFFELTVMFDEIDASGNM 145
Query: 235 KVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNW 288
V E+ + + E P + E DKNG G + +E W
Sbjct: 146 LVDEEEFKRAVPKLEAWGAKVEDPAALFKEL-------DKNGTGSVTFDEFAAW 192
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 41.1 bits (97), Expect = 2e-04
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 29/139 (20%)
Query: 189 DVADIDGDRALTREEFASFL-------HPEETAHMRDLVVVETMEDIDKDKDGKVSLREY 241
D DG A++ E + L T + + DK+ G+++ E+
Sbjct: 34 RAVDTDGSGAISVPELNAALSSAGVPFSLATTEKL--------LHMYDKNHSGEITFDEF 85
Query: 242 IGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEA 301
+ + +E F D +GDG +D EV+ +L + S+
Sbjct: 86 KDLHHF-------------ILSMREGFRKR-DSSGDGRLDSNEVRAALLSSGYQVSEQTF 131
Query: 302 RHLIYESDSDADQKLTKDE 320
+ L+ + D L D+
Sbjct: 132 QALMRKFDRQRRGSLGFDD 150
Score = 31.9 bits (73), Expect = 0.16
Identities = 27/187 (14%), Positives = 53/187 (28%), Gaps = 59/187 (31%)
Query: 107 DVADIDGDRALTREEFASFL-------HPEETAHMRDLVVVETMEDIDKDKDGKVSLREY 159
D DG A++ E + L T + + DK+ G+++ E+
Sbjct: 34 RAVDTDGSGAISVPELNAALSSAGVPFSLATTEKL--------LHMYDKNHSGEITFDEF 85
Query: 160 IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLH-------PEE 212
++ + + + + D GD L E + L +
Sbjct: 86 KDL---------------HHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQT 130
Query: 213 TAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYR 272
+ M D+ + G + +Y+ V + FA Y
Sbjct: 131 FQAL--------MRKFDRQRRGSLGFDDYVELSIF-------------VCRVRNVFAFY- 168
Query: 273 DKNGDGF 279
D+ G
Sbjct: 169 DRERTGQ 175
Score = 29.6 bits (67), Expect = 1.0
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E F D +G G + E+ + S A L++ D + ++T DE
Sbjct: 30 MEWFRAV-DTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDE 84
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 40.2 bits (94), Expect = 3e-04
Identities = 20/149 (13%), Positives = 42/149 (28%), Gaps = 14/149 (9%)
Query: 185 KRRWDVADIDGDRALTREEFASFL---------HPEETAHMRDLVVVETMEDIDKDKDGK 235
K ++ D++ + ++ +E E A V +
Sbjct: 19 KHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVE 78
Query: 236 VSLREYIGDMFRGGDTDGDEELPD----WVKNEKEQFAMYRDKNGDGFMDEEEVKNWILP 291
YI + + ++ + F + DK+ +G + +E K +
Sbjct: 79 TDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIV-DKDQNGAITLDEWKAYTKA 137
Query: 292 PDFDHSDAEARHLIYESDSDADQKLTKDE 320
S + D D +L DE
Sbjct: 138 AGIIQSSEDCEETFRVCDIDESGQLDVDE 166
Score = 39.4 bits (92), Expect = 6e-04
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 13/167 (7%)
Query: 103 KRRWDVADIDGDRALTREEFASFL---------HPEETAHMRDLVVVETMEDIDKDKDGK 153
K ++ D++ + ++ +E E A V +
Sbjct: 19 KHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVE 78
Query: 154 VSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFLHPE 211
YIE + ++ + L R D+ D D + A+T +E+ ++
Sbjct: 79 TDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTK-A 137
Query: 212 ETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELP 258
ET D D+ G++ + E G D
Sbjct: 138 AGIIQSSEDCEETFRVCDIDESGQLDVDEMT-RQHLGFWYTMDPACE 183
Score = 38.2 bits (89), Expect = 0.002
Identities = 22/154 (14%), Positives = 50/154 (32%), Gaps = 17/154 (11%)
Query: 18 DKIDKDKDGFVSKEELKEWIQ----------FTQKRYIHNDVESQWRTHNPEDKEKITWD 67
+ +D + +G +S +E+ Q + + VE+ + + + W
Sbjct: 23 NFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVETDWP 82
Query: 68 EYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLH 127
Y E + + + + L + D D + A+T +E+ ++
Sbjct: 83 AYIEGWKKLATDELEKYAKNEPTLIRIWGDALFD------IVDKDQNGAITLDEWKAYTK 136
Query: 128 PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
ET D D+ G++ + E
Sbjct: 137 -AAGIIQSSEDCEETFRVCDIDESGQLDVDEMTR 169
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 39.9 bits (94), Expect = 4e-04
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
D+D L+ +E L + + + + DID + G++ +++
Sbjct: 67 DVDNSGTLSSQEILDGLK-KIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTY 125
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDH--SDAEARHLIYESD 309
E F + D +G+G + EE+K D ++ D L+ E D
Sbjct: 126 LKKEVC-------LIPFKFF-DIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVD 177
Query: 310 SDADQKLTKDE 320
+ D ++ E
Sbjct: 178 LNGDGEIDFHE 188
Score = 37.6 bits (88), Expect = 0.003
Identities = 20/132 (15%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
D+D L+ +E L + + + + DID + G++ +++ +
Sbjct: 67 DVDNSGTLSSQEILDGLK-KIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAA-TIDKQT 124
Query: 170 DEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAH-MRDLVVVETMEDI 228
+ + DIDG+ ++ EE ++ + + D + ++++
Sbjct: 125 YLKK--------EVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEV 176
Query: 229 DKDKDGKVSLRE 240
D + DG++ E
Sbjct: 177 DLNGDGEIDFHE 188
Score = 33.3 bits (77), Expect = 0.068
Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 43/173 (24%)
Query: 123 ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAA---ELAKDEDQGFSYKN 179
A L E ++R +D D G +S +E ++ + +
Sbjct: 48 AKHLCDVEINNLR-----NIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPD-----IHQ 97
Query: 180 MLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMED----IDKDKDGK 235
+L D + + +F + T + + E D D +GK
Sbjct: 98 VLRD-------IDSNASGQIHYTDFLAA-----TIDKQTYLKKEVCLIPFKFFDIDGNGK 145
Query: 236 VSLRE--YIGDMFRGGDTDGDEELPDWVKNEKEQFAMYR--DKNGDGFMDEEE 284
+S+ E I + D+ + + + D NGDG +D E
Sbjct: 146 ISVEELKRIFGRDDIENPLIDKAIDS----------LLQEVDLNGDGEIDFHE 188
Score = 29.9 bits (68), Expect = 0.80
Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 110 DIDGDRALTREEFASFLHPEETAH-MRDLVVVETMEDIDKDKDGKVSLREYIE 161
DIDG+ ++ EE ++ + + D + ++++D + DG++ E++
Sbjct: 139 DIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFML 191
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 39.1 bits (92), Expect = 5e-04
Identities = 28/143 (19%), Positives = 61/143 (42%), Gaps = 21/143 (14%)
Query: 185 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGD 244
+R+ D+D +L+ EEF S ++ ++ + ++ D D +G+V +E+I
Sbjct: 9 GKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV-----IDIFDTDGNGEVDFKEFIEG 63
Query: 245 MFR-GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDF------DHS 297
+ + D +++L + F +Y D + DG++ E+ +L
Sbjct: 64 VSQFSVKGDKEQKL-------RFAFRIY-DMDKDGYISNGELFQ-VLKMMVGNNLKDTQL 114
Query: 298 DAEARHLIYESDSDADQKLTKDE 320
I +D D D +++ +E
Sbjct: 115 QQIVDKTIINADKDGDGRISFEE 137
Score = 38.0 bits (89), Expect = 0.001
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 103 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
+R+ D+D +L+ EEF S ++ ++ + ++ D D +G+V +E+IE
Sbjct: 9 GKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRV-----IDIFDTDGNGEVDFKEFIEG 63
Query: 163 DAAELAKDEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFLHPEETAHMRD-- 218
+ K + K R+ + D+D D ++ E L +++D
Sbjct: 64 VSQFSVKGD----------KEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQ 113
Query: 219 --LVVVETMEDIDKDKDGKVSLREYIGDMFRGGD 250
+V +T+ + DKD DG++S E+ + G D
Sbjct: 114 LQQIVDKTIINADKDGDGRISFEEFC-AVVGGLD 146
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 38.2 bits (89), Expect = 6e-04
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 144 EDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGDRALTR 201
DK G ++ + + ++ L + W+++DID D LT
Sbjct: 21 NSHDKTMSGHLT-------------GPQARTILMQSSLPQAQLASIWNLSDIDQDGKLTA 67
Query: 202 EEFASFLH 209
EEF +H
Sbjct: 68 EEFILAMH 75
Score = 33.6 bits (77), Expect = 0.019
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 57 NPEDKEKITWDEYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGD 114
+ K YR+ ++ D+ + L + + ++ L + W+++DID D
Sbjct: 9 PQSSRLK-----YRQ-LFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQD 62
Query: 115 RALTREEFASFLH 127
LT EEF +H
Sbjct: 63 GKLTAEEFILAMH 75
Score = 30.1 bits (68), Expect = 0.36
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 259 DWV--KNEKEQFAMY---RDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
+W ++ + ++ DK G + + + ++ A+ + SD D D
Sbjct: 5 EWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILM--QSSLPQAQLASIWNLSDIDQD 62
Query: 314 QKLTKDE 320
KLT +E
Sbjct: 63 GKLTAEE 69
Score = 29.0 bits (65), Expect = 0.87
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 13/64 (20%)
Query: 188 WDVADIDGDRALTREEFASF-----LHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
++ D LT + + L + A + +L D D+DGK++ E+I
Sbjct: 20 FNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLS--------DIDQDGKLTAEEFI 71
Query: 243 GDMF 246
M
Sbjct: 72 LAMH 75
Score = 28.2 bits (63), Expect = 1.4
Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 4 IVDKIDKDKDGLIVDKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEK 63
V + + K + + DK G ++ + + Q + S W + + K
Sbjct: 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTI--LMQSSLPQAQLASIWNLSDIDQDGK 64
Query: 64 ITWDEY 69
+T +E+
Sbjct: 65 LTAEEF 70
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 39.8 bits (93), Expect = 6e-04
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 16/129 (12%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
D D L E + + M D D +G +S E++
Sbjct: 61 DRDRSGTLEINELMMGQF-PGGIRLSPQTALRMMRIFDTDFNGHISFYEFM--------- 110
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSD 311
+ +++ F M + G ++ E+ + F + L++ +
Sbjct: 111 ----AMYKFMELAYNLFVMN-ARARSGTLEPHEILPALQQLGFYINQ-RTSLLLHRLFAR 164
Query: 312 ADQKLTKDE 320
+
Sbjct: 165 GMAFCDLNC 173
Score = 34.4 bits (79), Expect = 0.029
Identities = 17/174 (9%), Positives = 37/174 (21%), Gaps = 38/174 (21%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAK 169
D D L E + + M D D +G +S E++
Sbjct: 61 DRDRSGTLEINELMMGQF-PGGIRLSPQTALRMMRIFDTDFNGHISFYEFMA-------- 111
Query: 170 DEDQGFSYKNMLNRDKRRW----DVADIDGDRALTREEFASFLHPEETAHMR-DLVVVET 224
+ + + L E L + +
Sbjct: 112 -----------MYKFMELAYNLFVMNARARSGTLEPHEILPAL---QQLGFYINQRTSLL 157
Query: 225 MEDIDKDKDGKVSLREYIG---------DMFRGGDTDG-DEELPDWVKNEKEQF 268
+ + L +I ++ + + + E +F
Sbjct: 158 LHRLFARGMAFCDLNCWIAICAFAAQTRSAYQMIFMNPYYGPMKPFNPMEFGKF 211
Score = 32.1 bits (73), Expect = 0.17
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+ F D++ G ++ E+ P S A ++ D+D + ++ E
Sbjct: 54 YQWFMGV-DRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYE 108
Score = 26.7 bits (59), Expect = 9.3
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 18 DKIDKDKDGFVSKEELKE 35
+D+D+ G + EL
Sbjct: 58 MGVDRDRSGTLEINELMM 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 60/412 (14%), Positives = 114/412 (27%), Gaps = 135/412 (32%)
Query: 36 WIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFLDEVDAA--ELAKDEDQGF 93
W+ +E + D + ++ + + + A L K +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--- 242
Query: 94 SYKNML----N-RDKRRWDVADIDGDRAL--TR------------------EEFASFLHP 128
Y+N L N ++ + W+ ++ + L TR + + L P
Sbjct: 243 -YENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 129 EETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGF---------SYKN 179
+E + L +Y++ +L ++ S ++
Sbjct: 301 DEVKSL---------------------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 180 MLNRDKRRWD-VADIDGDR-ALTREEFASFLHPEETAHM-RDLVV--------------- 221
L WD ++ D+ E + L P E M L V
Sbjct: 340 GLA----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 222 ------VETMEDIDK-------DKDGK--------------------VSLREYIGDMFRG 248
+ M ++K +K K +L I D +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 249 GDT-DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYE 307
T D D+ +P ++ + KN + + L DF + + RH
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQKIRHDSTA 513
Query: 308 SDSDA-------DQKLTKDEIL---AKYDLFVGSQATDF----GEALVRHDE 345
++ K K I KY+ V + DF E L+
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKY 564
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 37.0 bits (86), Expect = 0.001
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 15/66 (22%)
Query: 146 IDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGDRALTREE 203
DKD DG VS E + K L W + D L++++
Sbjct: 19 TDKDMDGFVS-------------GLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQ 65
Query: 204 FASFLH 209
FA H
Sbjct: 66 FALAFH 71
Score = 36.6 bits (85), Expect = 0.002
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEY 69
K DKD DGFVS E++E F + + W + +D K++ D++
Sbjct: 17 LKTDKDMDGFVSGLEVREI--FLKTGLPSTLLAHIWSLCDTKDCGKLSKDQF 66
Score = 32.8 bits (75), Expect = 0.031
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 57 NPEDKEKIT--WDEYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADID 112
+P +K K + + + + GF+ ++ E K L W + D
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVRE--------IFLKTGLPSTLLAHIWSLCDTK 56
Query: 113 GDRALTREEFASFLH 127
L++++FA H
Sbjct: 57 DCGKLSKDQFALAFH 71
Score = 30.1 bits (68), Expect = 0.32
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 11/60 (18%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWI----LPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E F DK+ DGF+ EV+ LP H+ D+ KL+KD+
Sbjct: 13 DEIFLKT-DKDMDGFVSGLEVREIFLKTGLPST------LLAHIWSLCDTKDCGKLSKDQ 65
Score = 27.4 bits (61), Expect = 2.3
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 13/64 (20%)
Query: 188 WDVADIDGDRALTREEFASF-----LHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ D D D ++ E L AH+ L D GK+S ++
Sbjct: 16 FLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLC--------DTKDCGKLSKDQFA 67
Query: 243 GDMF 246
Sbjct: 68 LAFH 71
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 36.6 bits (85), Expect = 0.001
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 155 SLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETA 214
S RE + A+ +E + + D + L REEF +
Sbjct: 9 SGRENLYFQGADGDGEELARL---------RSVFAACDANRSGRLEREEFRALC---TEL 56
Query: 215 HMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRG 248
+R + +D D+DG ++ +E+ F G
Sbjct: 57 RVRPADAEAVFQRLDADRDGAITFQEFA-RGFLG 89
Score = 34.3 bits (79), Expect = 0.008
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 103 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
+ + D + L REEF + +R + +D D+DG ++ +E+
Sbjct: 30 RSVFAACDANRSGRLEREEFRALC---TELRVRPADAEAVFQRLDADRDGAITFQEFAR 85
Score = 30.8 bits (70), Expect = 0.13
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 245 MFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHL 304
F+G D DG+E + FA D N G ++ EE + L + A+A +
Sbjct: 15 YFQGADGDGEEL-----ARLRSVFAAC-DANRSGRLEREEFRA--LCTELRVRPADAEAV 66
Query: 305 IYESDSDADQKLTKDE 320
D+D D +T E
Sbjct: 67 FQRLDADRDGAITFQE 82
Score = 26.2 bits (58), Expect = 6.6
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 18 DKIDKDKDGFVSKEELKE 35
D ++ G + +EE +
Sbjct: 34 AACDANRSGRLEREEFRA 51
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 36.7 bits (85), Expect = 0.001
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFR 247
+ I G+ A+ R++ L E ++R +++D + DG V+ +E++ + +
Sbjct: 20 SLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIK 77
Score = 36.3 bits (84), Expect = 0.002
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 160
+ I G+ A+ R++ L E ++R +++D + DG V+ +E++
Sbjct: 20 SLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFL 72
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 37.9 bits (89), Expect = 0.002
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
+ +IDKD G + E++ M G+ D EE+ + F ++ D + G + +
Sbjct: 70 ISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEI-------LKAFRLF-DDDNSGTITIK 121
Query: 284 EVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE---ILAKYDLF 328
+++ + ++ E + +I E+D + D ++ +DE I+ K LF
Sbjct: 122 DLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF 169
Score = 31.8 bits (73), Expect = 0.18
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 41/151 (27%)
Query: 146 IDKDKDGKVSLREY--------IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDR 197
D D G + +E E E+ K M++ D DG
Sbjct: 37 FDTDGSGTIDAKELKVAMRALGFEPKKEEI----------KKMISE-------IDKDGSG 79
Query: 198 ALTREEFASFLHPEETAHMRDLVVVETMEDI----DKDKDGKVSLREYIGDMFRGGDTDG 253
+ EEF + + TA M + E + D D G +++++ G+
Sbjct: 80 TIDFEEFLTMM----TAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLT 135
Query: 254 DEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
+EEL + + D+N D +DE+E
Sbjct: 136 EEELQEMIAEA--------DRNDDNEIDEDE 158
Score = 29.1 bits (66), Expect = 1.4
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+E F ++ D +G G +D +E+K + F+ E + +I E D D + +E
Sbjct: 31 REAFDLF-DTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEE 85
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 37.4 bits (88), Expect = 0.002
Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
+ +IDK+ GK++ +++ M + + D EE+ + F ++ D + G + +
Sbjct: 48 ISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEI-------LKAFKLF-DDDETGKISFK 99
Query: 284 EVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+K + +D E + +I E+D D D ++++ E
Sbjct: 100 NLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQE 136
Score = 30.1 bits (69), Expect = 0.54
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 41/151 (27%)
Query: 146 IDKDKDGKVSLREY--------IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDR 197
D D G + ++E E E+ K M++ D +G
Sbjct: 15 FDADGTGTIDVKELKVAMRALGFEPKKEEI----------KKMISE-------IDKEGTG 57
Query: 198 ALTREEFASFLHPEETAHMRDLVVVETMEDI----DKDKDGKVSLREYIGDMFRGGDTDG 253
+ +F + + T M + E + D D+ GK+S + G+
Sbjct: 58 KMNFGDFLTVM----TQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLT 113
Query: 254 DEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
DEEL + + D++GDG + E+E
Sbjct: 114 DEELQEMIDEA--------DRDGDGEVSEQE 136
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 38.1 bits (89), Expect = 0.002
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 34/170 (20%)
Query: 110 DIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
D DG R+L +EF L E + D++ G + L E++
Sbjct: 47 DRDGSRSLDADEFRQGLAKLGLVLDQAEAEGV--------CRKWDRNGSGTLDLEEFLRA 98
Query: 163 DAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMR----- 217
+++ + + D GD +T ++ +R
Sbjct: 99 LRPPMSQAREAVI---------AAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWT 149
Query: 218 -DLVVVETMEDIDK-DKDGKVSLREYIGDMFRG--GDTDGDEELPDWVKN 263
D V+ +++ D +KDG+V+L E+ D + G + DEE + +
Sbjct: 150 EDEVLRRFLDNFDSSEKDGQVTLAEFQ-DYYSGVSASMNTDEEFVAMMTS 198
Score = 37.7 bits (88), Expect = 0.002
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 31/144 (21%)
Query: 192 DIDGDRALTREEFASFLH-------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGD 244
D DG R+L +EF L E + D++ G + L E++
Sbjct: 47 DRDGSRSLDADEFRQGLAKLGLVLDQAEAEGV--------CRKWDRNGSGTLDLEEFLRA 98
Query: 245 MFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDF-------DHS 297
+ + + FA D++GDG + ++++
Sbjct: 99 LRPPMSQAREAVI-------AAAFAKL-DRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTE 150
Query: 298 DAEARHLIYESDS-DADQKLTKDE 320
D R + DS + D ++T E
Sbjct: 151 DEVLRRFLDNFDSSEKDGQVTLAE 174
Score = 30.0 bits (68), Expect = 0.77
Identities = 28/154 (18%), Positives = 49/154 (31%), Gaps = 30/154 (19%)
Query: 141 ETMEDIDKDKDGKVSLREYIEVDAA---ELAKDEDQGFSYKNMLNRDKRRWDVADIDGDR 197
+D+D + E+ + A L + E + + D +G
Sbjct: 41 RFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAE-----AEGV-------CRKWDRNGSG 88
Query: 198 ALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLRE-------YIGDMFRGGD 250
L EEF L P + R+ V+ +D+ DG V++ + R G+
Sbjct: 89 TLDLEEFLRALRPPMSQ-AREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGE 147
Query: 251 TDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
DE L + + DG + E
Sbjct: 148 WTEDEVL-------RRFLDNFDSSEKDGQVTLAE 174
Score = 28.1 bits (63), Expect = 3.3
Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 1 MRLIVDKIDKDKDGLIV---DKIDKDKDGFVSKEELKE 35
+R + + + ++ +I K+D+ DG V+ ++L+
Sbjct: 96 LRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRG 133
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 36.7 bits (85), Expect = 0.002
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 144 EDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGDRALTR 201
+ D +S + F K+ L+ W+++D D D ALT
Sbjct: 29 RSLQPDPSSFIS-------------GSVAKNFFTKSKLSIPELSYIWELSDADCDGALTL 75
Query: 202 EEFASFLH 209
EF + H
Sbjct: 76 PEFCAAFH 83
Score = 35.1 bits (81), Expect = 0.006
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 55 THNPEDKEKITWDEYR--EKVYGFLDEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVAD 110
+ P++ +IT ++ + L ++ ++ + F K+ L+ W+++D
Sbjct: 7 SSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSD 66
Query: 111 IDGDRALTREEFASFLH 127
D D ALT EF + H
Sbjct: 67 ADCDGALTLPEFCAAFH 83
Score = 29.3 bits (66), Expect = 0.68
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 11/60 (18%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWI----LPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
QF + F+ KN+ L E ++ SD+D D LT E
Sbjct: 25 VNQFRSL-QPDPSSFISGSVAKNFFTKSKLSIP------ELSYIWELSDADCDGALTLPE 77
Score = 26.3 bits (58), Expect = 6.4
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 188 WDVADIDGDRALTREEFASF-----LHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ D ++ +F L E +++ +L D D DG ++L E+
Sbjct: 28 FRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELS--------DADCDGALTLPEFC 79
Query: 243 GDMF 246
Sbjct: 80 AAFH 83
Score = 26.3 bits (58), Expect = 6.9
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 16 IVDKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEY 69
+ D F+S K + FT+ + ++ W + + +T E+
Sbjct: 27 QFRSLQPDPSSFISGSVAKNF--FTKSKLSIPELSYIWELSDADCDGALTLPEF 78
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 223 ETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDE 282
++ID + DG VS E + + ++ L + F D +G+G +D+
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLL-------QLIFKSI-DADGNGEIDQ 55
Query: 283 EEVKNWI 289
E +
Sbjct: 56 NEFAKFY 62
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 103 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
+ + D++GD A++ EE +F+ ++ A + ++ + ID D +G++ E+ +
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVS-KKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Score = 33.7 bits (78), Expect = 0.007
Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 185 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ + D++GD A++ EE +F+ ++ A + ++ + ID D +G++ E+
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVS-KKRAIKNEQLLQLIFKSIDADGNGEIDQNEFA 59
Score = 30.2 bits (69), Expect = 0.13
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 273 DKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDEILA 323
D NGDG + EEVK ++ ++ + + D+D + ++ ++E
Sbjct: 10 DVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Score = 26.8 bits (60), Expect = 2.1
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 24/61 (39%)
Query: 1 MRLIVDKIDKDKDGLI------------------------VDKIDKDKDGFVSKEELKEW 36
+ +ID + DG + ID D +G + + E ++
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 37 I 37
Sbjct: 62 Y 62
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 37.5 bits (88), Expect = 0.002
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
+ ++D D +G + E++ M R DTD +EE+ +E F ++ DK+G+G++
Sbjct: 53 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI-------REAFRVF-DKDGNGYISAA 104
Query: 284 EVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E+++ + +D E +I E+D D D ++ +E
Sbjct: 105 ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141
Score = 29.4 bits (67), Expect = 1.1
Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 47/154 (30%)
Query: 146 IDKDKDGKVSLREY--------IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDR 197
DKD DG ++ +E AEL ++M+N D DG+
Sbjct: 20 FDKDGDGTITTKELGTVMRSLGQNPTEAEL----------QDMINE-------VDADGNG 62
Query: 198 ALTREEFASFLHPEETAHMRDLVVVETMEDI-------DKDKDGKVSLREYIGDMFRGGD 250
+ EF + + M+D ++ E+I DKD +G +S E M G+
Sbjct: 63 TIDFPEFLTMM----ARKMKDT---DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE 115
Query: 251 TDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
DEE+ + ++ D +GDG ++ EE
Sbjct: 116 KLTDEEVDEMIREA--------DIDGDGQVNYEE 141
Score = 29.0 bits (66), Expect = 1.4
Identities = 35/146 (23%), Positives = 49/146 (33%), Gaps = 38/146 (26%)
Query: 109 ADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDI-------DKDKDGKVSLREYIE 161
D DG+ + EF + + M+D ++ E+I DKD +G +S E
Sbjct: 56 VDADGNGTIDFPEFLTMM----ARKMKDT---DSEEEIREAFRVFDKDGNGYISAAELRH 108
Query: 162 VDAA--ELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDL 219
V E DE+ M+ ADIDGD + EEF + TA
Sbjct: 109 VMTNLGEKLTDEE----VDEMI-------READIDGDGQVNYEEFVQMM----TAKGGGG 153
Query: 220 VVVETMEDI-------DKDKDGKVSL 238
E I K L
Sbjct: 154 GAAARKEVIRNKIRAIGKMARVFSVL 179
Score = 29.0 bits (66), Expect = 1.4
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 143 MEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTRE 202
+ ++D D +G + E++ + A KD D S + + + + V D DG+ ++
Sbjct: 53 INEVDADGNGTIDFPEFLTM-MARKMKDTD---SEEEI----REAFRVFDKDGNGYISAA 104
Query: 203 EFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI----GDMFRGGDTDGDEELP 258
E + + D V E + + D D DG+V+ E++ GG E +
Sbjct: 105 ELRHVMT-NLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVI- 162
Query: 259 DWVKNEKEQFAMYRDKNGDGF 279
+ + K F
Sbjct: 163 ------RNKIRAI-GKMARVF 176
Score = 28.3 bits (64), Expect = 2.7
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
KE F+++ DK+GDG + +E+ + + ++AE + +I E D+D + + E
Sbjct: 14 KEAFSLF-DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 68
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 37.2 bits (87), Expect = 0.002
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 14/129 (10%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
D D ++ E L + V + D++ V+ E+ G
Sbjct: 17 DKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKY---- 72
Query: 252 DGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSD 311
+ + + F Y D++ G +D+ E+K + + SD LI + D
Sbjct: 73 ---------ITDWQNVFRTY-DRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQ 122
Query: 312 ADQKLTKDE 320
++ D+
Sbjct: 123 GRGQIAFDD 131
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 37.1 bits (87), Expect = 0.003
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
+++ D + + ++ M D +E+ K F ++ D + G + +
Sbjct: 65 IDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEI-------KRAFQLF-DDDHTGKISIK 116
Query: 284 EVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
++ +D E R +I E D D D ++ ++E
Sbjct: 117 NLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENE 153
Score = 29.4 bits (67), Expect = 1.0
Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 45/153 (29%)
Query: 146 IDKDKDGKVSLREY--------IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDR 197
D + DG + E E+ E+ ++++ D +G
Sbjct: 32 FDMNNDGFLDYHELKVAMKALGFELPKREI----------LDLIDE-------YDSEGRH 74
Query: 198 ALTREEFASFLHPEETAHMRDLVVVETMEDI----DKDKDGKVSLREYIGDMFRGGDTDG 253
+ ++F + + ++ ++ D D GK+S++ G+T
Sbjct: 75 LMKYDDFYIVM----GEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLT 130
Query: 254 DEELPDWVKNEKEQFAMYR--DKNGDGFMDEEE 284
DEEL M D +GDG ++E E
Sbjct: 131 DEELRA----------MIEEFDLDGDGEINENE 153
Score = 29.1 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E F+++ D N DGF+D E+K + F+ E LI E DS+ + D+
Sbjct: 26 YEAFSLF-DMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDD 80
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 36.8 bits (86), Expect = 0.003
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 221 VVETMEDIDKDKDGKVSLREYIGDMFR-----GGDTDGDEELPDWVKNEKEQFAMYRDKN 275
+ + +++ D +G + + R +EL +E F +Y DK
Sbjct: 52 IRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQEL-------REAFRLY-DKE 103
Query: 276 GDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
G+G++ + ++ + D S + +I E D+D + +E
Sbjct: 104 GNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEE 148
Score = 30.6 bits (70), Expect = 0.39
Identities = 17/112 (15%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 139 VVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRA 198
+ + +++ D +G + + + A L ++ + + + + + + D +G+
Sbjct: 52 IRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQEL----REAFRLYDKEGNGY 107
Query: 199 LTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGD 250
++ + L E + + +++ID D G V E++ + GGD
Sbjct: 108 ISTDVMREILA-ELDETLSSEDLDAMIDEIDADGSGTVDFEEFM-GVMTGGD 157
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 35.1 bits (81), Expect = 0.004
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 144 EDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGDRALTR 201
+ I D +G + + F K+ L W+++D D D ALT
Sbjct: 16 KTIQPDLNGFIP-------------GSAAKEFFTKSKLPILELSHIWELSDFDKDGALTL 62
Query: 202 EEFASFLH 209
+EF + H
Sbjct: 63 DEFCAAFH 70
Score = 32.0 bits (73), Expect = 0.059
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 58 PEDKEKITWDEYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGDR 115
E ++ Y + + + + F K+ L W+++D D D
Sbjct: 5 DEQRQY-----YVN-QFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDG 58
Query: 116 ALTREEFASFLH 127
ALT +EF + H
Sbjct: 59 ALTLDEFCAAFH 70
Score = 29.7 bits (67), Expect = 0.33
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
QF + +GF+ K + E H+ SD D D LT DE
Sbjct: 12 VNQFKTI-QPDLNGFIPGSAAKEFFT--KSKLPILELSHIWELSDFDKDGALTLDE 64
Score = 26.2 bits (58), Expect = 5.6
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEY 69
I D +GF+ KE+ FT+ + ++ W + + +T DE+
Sbjct: 16 KTIQPDLNGFIPGSAAKEF--FTKSKLPILELSHIWELSDFDKDGALTLDEF 65
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 34.6 bits (80), Expect = 0.004
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRDLVVVET-MEDIDKDKDGKVSLREYIGDMFR 247
A +GD L++EE + E + ++ ++ +++DK+ DG+VS E+ + +
Sbjct: 17 AAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75
Score = 34.2 bits (79), Expect = 0.007
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRDLVVVET-MEDIDKDKDGKVSLREYI 160
A +GD L++EE + E + ++ ++ +++DK+ DG+VS E+
Sbjct: 17 AAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQ 70
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 36.6 bits (85), Expect = 0.004
Identities = 22/176 (12%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 123 ASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFS----YK 178
F +P + + +D + +GK++L E + + ++ + ++
Sbjct: 11 TDFDNPRWIKRHK-----HMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQ 65
Query: 179 NMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMED----------I 228
+ ++ + + +F T+ ++ E
Sbjct: 66 VCVEAFF---RGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIF 122
Query: 229 DKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
DKD G ++L E+ G + E+ ++ D + G +D +E
Sbjct: 123 DKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHC--------DLDNAGDLDVDE 170
Score = 35.5 bits (82), Expect = 0.011
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 15/161 (9%)
Query: 110 DIDGDRALTREEFASFL----------HPEETAHMRDLVVVETMEDIDKDKDGKVSLREY 159
DI+G+ +T +E S PE+ + V + +++ ++
Sbjct: 30 DINGNGKITLDEIVSKASDDICAKLEATPEQ-TKRHQVCVEAFFRGCGMEYGKEIAFPQF 88
Query: 160 IEVDAAELAKDEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFLHPEETAHMR 217
++ + + + L R+ D+ D DG +T +E+ ++
Sbjct: 89 LDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK-ISGISPS 147
Query: 218 DLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELP 258
T D D G + + E G D E
Sbjct: 148 QEDCEATFRHCDLDNAGDLDVDEMT-RQHLGFWYTLDPEAD 187
Score = 34.3 bits (79), Expect = 0.032
Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 16/143 (11%)
Query: 192 DIDGDRALTREEFASFL----------HPEETAHMRDLVVVETMEDIDKDKDGKVSLREY 241
DI+G+ +T +E S PE+ + V + +++ ++
Sbjct: 30 DINGNGKITLDEIVSKASDDICAKLEATPEQ-TKRHQVCVEAFFRGCGMEYGKEIAFPQF 88
Query: 242 IGDMFRGG----DTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHS 297
+ + E + F ++ DK+G G + +E K + S
Sbjct: 89 LDGWKQLATSELKKWARNEPTLIREWGDAVFDIF-DKDGSGTITLDEWKAYGKISGISPS 147
Query: 298 DAEARHLIYESDSDADQKLTKDE 320
+ D D L DE
Sbjct: 148 QEDCEATFRHCDLDNAGDLDVDE 170
Score = 28.9 bits (65), Expect = 1.7
Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 19/152 (12%)
Query: 18 DKIDKDKDGFVSKEELKEWIQFTQKRYI-HNDVESQ---------WRTHNPEDKEKITWD 67
D +D + +G ++ +E+ + +++ +R E ++I +
Sbjct: 27 DFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFP 86
Query: 68 EYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRDKRR-WDVADIDGDRALTREEFASFL 126
+ FLD ++ + + ++ +D+ D DG +T +E+ ++
Sbjct: 87 Q-------FLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYG 139
Query: 127 HPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 158
T D D G + + E
Sbjct: 140 K-ISGISPSQEDCEATFRHCDLDNAGDLDVDE 170
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 36.7 bits (85), Expect = 0.005
Identities = 21/159 (13%), Positives = 50/159 (31%), Gaps = 26/159 (16%)
Query: 95 YKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDK-DGK 153
++ + + + E+ S + + V
Sbjct: 23 HRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRV-----FSTSPAKDS 77
Query: 154 VSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFL--- 208
+S +++++ + FS K + + D D D L RE+ + +
Sbjct: 78 LSFEDFLDLLSV---------FSDTATP-DIKSHYAFRIFDFDDDGTLNREDLSRLVNCL 127
Query: 209 -----HPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+A ++ +E+ D D+DG ++L E+
Sbjct: 128 TGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQ 166
Score = 35.5 bits (82), Expect = 0.010
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 101 RDKRRW--DVADIDGDRALTREEFASFL--------HPEETAHMRDLVVVETMEDIDKDK 150
K + + D D D L RE+ + + +A ++ +E+ D D+
Sbjct: 97 DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDR 156
Query: 151 DGKVSLREYIEV 162
DG ++L E+ V
Sbjct: 157 DGTINLSEFQHV 168
Score = 31.3 bits (71), Expect = 0.31
Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 24/155 (15%)
Query: 177 YKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDK-DGK 235
++ + + + E+ S + + V
Sbjct: 23 HRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRV-----FSTSPAKDS 77
Query: 236 VSLREYIGDMFR-GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI----- 289
+S +++ + D + F ++ D + DG ++ E++ +
Sbjct: 78 LSFEDFLDLLSVFSDTATPDIKS-------HYAFRIF-DFDDDGTLNREDLSRLVNCLTG 129
Query: 290 LPPDFDHSDAEARHL----IYESDSDADQKLTKDE 320
D S +E + L + ESD D D + E
Sbjct: 130 EGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 164
Score = 30.9 bits (70), Expect = 0.43
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 147 DKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFAS 206
D D DG ++ + + + ED S M + +DID D + EF
Sbjct: 108 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH 167
Query: 207 FL 208
+
Sbjct: 168 VI 169
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 35.9 bits (84), Expect = 0.005
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
+ ++D D +G + E++ M R + D +EEL E F ++ D++G+G +
Sbjct: 52 INEVDADGNGTIDFPEFLSLMARKMKEQDSEEEL-------IEAFKVF-DRDGNGLISAA 103
Query: 284 EVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E+++ + +D E +I E+D D D + +E
Sbjct: 104 ELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEE 140
Score = 29.4 bits (67), Expect = 1.0
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 47/154 (30%)
Query: 146 IDKDKDGKVSLREY--------IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDR 197
DKD DG ++ +E AEL ++M+N D DG+
Sbjct: 19 FDKDGDGTITTKELGTVMRSLGQNPTEAEL----------QDMINE-------VDADGNG 61
Query: 198 ALTREEFASFLHPEETAHMRDLVVVETMEDI-------DKDKDGKVSLREYIGDMFRGGD 250
+ EF S + M++ ++ E++ D+D +G +S E M G+
Sbjct: 62 TIDFPEFLSLM----ARKMKE---QDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGE 114
Query: 251 TDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
D+E+ + ++ D +GDG ++ EE
Sbjct: 115 KLTDDEVDEMIREA--------DIDGDGHINYEE 140
Score = 27.8 bits (63), Expect = 2.8
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
KE FA++ DK+GDG + +E+ + + ++AE + +I E D+D + + E
Sbjct: 13 KEAFALF-DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPE 67
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 36.0 bits (84), Expect = 0.006
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFR----GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFM 280
+E++D+D G + E++ M R +EEL F ++ DKN DGF+
Sbjct: 62 IEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEEL-------ANCFRIF-DKNADGFI 113
Query: 281 DEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
D EE+ + ++ + L+ +SD + D ++ DE
Sbjct: 114 DIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDE 153
Score = 31.8 bits (73), Expect = 0.14
Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 44/154 (28%)
Query: 146 IDKDKDGKVSLREY--------IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDR 197
D D G +S +E EL ++ D DG
Sbjct: 29 FDADGGGDISTKELGTVMRMLGQNPTKEEL----------DAIIEE-------VDEDGSG 71
Query: 198 ALTREEFASFLHPEETAHMRDLVVVETMEDI-------DKDKDGKVSLREYIGDMFRGGD 250
+ EEF + M++ ++ E++ DK+ DG + + E + G+
Sbjct: 72 TIDFEEFLVMM----VRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGE 127
Query: 251 TDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
+E++ D +K+ DKN DG +D +E
Sbjct: 128 HVTEEDIEDLMKDS--------DKNNDGRIDFDE 153
Score = 27.2 bits (61), Expect = 6.5
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 143 MEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTRE 202
+E++D+D G + E++ + K++ +G S + + + + D + D + E
Sbjct: 62 IEEVDEDGSGTIDFEEFLVM-MVRQMKEDAKGKSEEEL----ANCFRIFDKNADGFIDIE 116
Query: 203 EFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 240
E L H+ + + + M+D DK+ DG++ E
Sbjct: 117 ELGEILR-ATGEHVTEEDIEDLMKDSDKNNDGRIDFDE 153
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 35.6 bits (83), Expect = 0.007
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFR-----GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGF 279
+ I+ + G V +++ M D G +EL ++ F + D NGDG
Sbjct: 53 SQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKEL-------RDAFREF-DTNGDGE 104
Query: 280 MDEEEVKNWILPPDFDH--SDAEARHLIYESDSDADQKLTKDE 320
+ E++ + H + +I + D + D ++ +E
Sbjct: 105 ISTSELRE-AMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEE 146
Score = 30.6 bits (70), Expect = 0.41
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 143 MEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTRE 202
+ I+ + G V +++E+ +L + K + + + D +GD ++
Sbjct: 53 SQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKEL----RDAFREFDTNGDGEISTS 108
Query: 203 EFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 240
E + + + E + D+D + DG+V E
Sbjct: 109 ELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEE 146
Score = 29.0 bits (66), Expect = 1.4
Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 38/152 (25%)
Query: 146 IDKDKDGKVSLREY--------IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDR 197
DKDKDG ++ R+ EL + + +++
Sbjct: 20 FDKDKDGYINCRDLGNCMRTMGYMPTEMEL----------IELSQQ-------INMNLGG 62
Query: 198 ALTREEFASFLHPEETAHMRDLVVVETMEDI----DKDKDGKVSLREYIGDMF-RGGDTD 252
+ ++F + P+ A D++ V+ + D D + DG++S E M G
Sbjct: 63 HVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQV 122
Query: 253 GDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
G ++ + +++ D NGDG +D EE
Sbjct: 123 GHRDIEEIIRDV--------DLNGDGRVDFEE 146
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 34.4 bits (79), Expect = 0.009
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 15/66 (22%)
Query: 146 IDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGDRALTREE 203
++ G+V + F K+ L + WD+AD DG L+++E
Sbjct: 20 VEAGNTGRVLALDAAA-------------FLKKSGLPDLILGKIWDLADTDGKGVLSKQE 66
Query: 204 FASFLH 209
F L
Sbjct: 67 FFVALR 72
Score = 32.9 bits (75), Expect = 0.033
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 71 EKVYGFLDEVDAAELAKDEDQGFSYKNMLNRD--KRRWDVADIDGDRALTREEFASFLH 127
EK Y ++ + + + F K+ L + WD+AD DG L+++EF L
Sbjct: 14 EKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALR 72
Score = 27.9 bits (62), Expect = 2.0
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 106 WDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 160
+ + + + A+FL + + + DL++ + + D D G +S +E+
Sbjct: 17 YRQVEAGNTGRVLALDAAAFL---KKSGLPDLILGKIWDLADTDGKGVLSKQEFF 68
Score = 27.9 bits (62), Expect = 2.0
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 188 WDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ + + + A+FL + + + DL++ + + D D G +S +E+
Sbjct: 17 YRQVEAGNTGRVLALDAAAFL---KKSGLPDLILGKIWDLADTDGKGVLSKQEFF 68
Score = 26.3 bits (58), Expect = 5.7
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 273 DKNGDGFMDEEEVKNWI----LPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+ G + + ++ LP + +D+D L+K E
Sbjct: 21 EAGNTGRVLALDAAAFLKKSGLPDL------ILGKIWDLADTDGKGVLSKQE 66
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 34.9 bits (80), Expect = 0.010
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 106 WDVADIDGDRALTREEFASFLH 127
W +AD+D D L EEFA H
Sbjct: 90 WKLADVDKDGLLDDEEFALANH 111
Score = 34.9 bits (80), Expect = 0.010
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 188 WDVADIDGDRALTREEFASFLH 209
W +AD+D D L EEFA H
Sbjct: 90 WKLADVDKDGLLDDEEFALANH 111
Score = 28.0 bits (62), Expect = 2.7
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 258 PDWVKN-EKEQFAM--YRDKNGDGFMDEEEVKNWI----LPPDFDHSDAEARHLIYESDS 310
+WV +K + Y +G + K + LP + +D
Sbjct: 42 VEWVVGKDKPTYDEIFYTLSPVNGKITGANAKKEMVKSKLPNT------VLGKIWKLADV 95
Query: 311 DADQKLTKDE 320
D D L +E
Sbjct: 96 DKDGLLDDEE 105
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 34.4 bits (79), Expect = 0.010
Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRDLVVVET-MEDIDKDKDGKVSLREYI 160
A +G + +L+ EF + + ++D+ ++ M+ +D ++D ++ EY
Sbjct: 32 ARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYW 85
Score = 34.4 bits (79), Expect = 0.010
Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRDLVVVET-MEDIDKDKDGKVSLREYI 242
A +G + +L+ EF + + ++D+ ++ M+ +D ++D ++ EY
Sbjct: 32 ARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYW 85
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 34.4 bits (79), Expect = 0.010
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPE----ETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDM 245
A GD+ L + E L E R+ + M +D +KD +V EY+ +
Sbjct: 20 AGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSL 79
Query: 246 FR 247
Sbjct: 80 AC 81
Score = 34.1 bits (78), Expect = 0.011
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPE----ETAHMRDLVVVETMEDIDKDKDGKVSLREYI 160
A GD+ L + E L E R+ + M +D +KD +V EY+
Sbjct: 20 AGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYV 76
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 35.2 bits (82), Expect = 0.010
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 222 VETMEDIDKDKDGKVSLREYIGDMFR--GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGF 279
V + K + + E++ + + E F + D+ G GF
Sbjct: 49 VFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADY-------MEAFKTF-DREGQGF 100
Query: 280 MDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
+ E+++ + SD + +I +D D
Sbjct: 101 ISGAELRHVLTALGERLSDEDVDEIIKLTDLQED 134
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 34.6 bits (80), Expect = 0.013
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
+ + + + + M + EL + F++ + E
Sbjct: 9 LLETTSTTKMETKYEDMLPVMAEKMDVEEFVSEL-------CKGFSLL-ADPERHLITAE 60
Query: 284 EVK-NWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
++ N + S +A+ ++ E D D D L + E
Sbjct: 61 SLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTE 98
Score = 30.8 bits (70), Expect = 0.28
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 8/114 (7%)
Query: 143 MEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTRE 202
+ + + + + V AE E+ + + + + +T E
Sbjct: 9 LLETTSTTKMETKYEDMLPV-MAEKMDVEE---FVSEL----CKGFSLLADPERHLITAE 60
Query: 203 EFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEE 256
M + + D D DG ++ E+ M R ++
Sbjct: 61 SLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDA 114
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 34.4 bits (79), Expect = 0.014
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 106 WDVADIDGDRALTREEFASFLH 127
W +AD++ D + + EF+ +
Sbjct: 72 WALADMNNDGRMDQVEFSIAMK 93
Score = 34.4 bits (79), Expect = 0.014
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 188 WDVADIDGDRALTREEFASFLH 209
W +AD++ D + + EF+ +
Sbjct: 72 WALADMNNDGRMDQVEFSIAMK 93
Score = 29.0 bits (65), Expect = 0.95
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 258 PDWV--KNEKEQFAM--YRDKNGDGFMDEEEVKNWI----LPPDFDHSDAEARHLIYESD 309
W E+ + + K GF+ ++ +N+ LP + +D
Sbjct: 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQP------VLAQIWALAD 76
Query: 310 SDADQKLTKDE 320
+ D ++ + E
Sbjct: 77 MNNDGRMDQVE 87
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 33.6 bits (77), Expect = 0.015
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 191 ADIDGDRA-LTREEFASFLHPEETAHMRD-LVVVETMEDIDKDKDGKVSLREYIGDMFR 247
+ +G + L+R+E + E + + M+ +DK+ D ++ +EY +
Sbjct: 20 SGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFLTM 78
Score = 33.6 bits (77), Expect = 0.017
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 109 ADIDGDRA-LTREEFASFLHPEETAHMRD-LVVVETMEDIDKDKDGKVSLREYI 160
+ +G + L+R+E + E + + M+ +DK+ D ++ +EY
Sbjct: 20 SGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYS 73
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 33.7 bits (77), Expect = 0.017
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRDLV----VVETMEDIDKDKDGKVSLREYIGDM 245
+ +GD+ L + E L E + + + M ++D ++D +V +EY +
Sbjct: 32 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
Query: 246 FR 247
Sbjct: 92 SC 93
Score = 33.7 bits (77), Expect = 0.020
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRDLV----VVETMEDIDKDKDGKVSLREYI 160
+ +GD+ L + E L E + + + M ++D ++D +V +EY
Sbjct: 32 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 88
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 35.2 bits (81), Expect = 0.018
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 26/148 (17%)
Query: 111 IDGDRALTREEFAS-FLHPEETAHMRDLVVVETMEDI-----DKDKDGKVSLREYIEVDA 164
+ + E + E+ + +L E I +S +++++ +
Sbjct: 60 LLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLS 119
Query: 165 AELAKDEDQGFSYKNMLNRDKRRW--DVADIDGDRALTREEFASFL--------HPEETA 214
FS + K + + D D D L RE+ + + +A
Sbjct: 120 V---------FSDTATPD-IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSA 169
Query: 215 HMRDLVVVETMEDIDKDKDGKVSLREYI 242
++ +E+ D D+DG ++L E+
Sbjct: 170 SEMKQLIDNILEESDIDRDGTINLSEFQ 197
Score = 34.8 bits (80), Expect = 0.021
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 102 DKRRW--DVADIDGDRALTREEFASFL--------HPEETAHMRDLVVVETMEDIDKDKD 151
K + + D D D L RE+ + + +A ++ +E+ D D+D
Sbjct: 129 IKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRD 188
Query: 152 GKVSLREYIEV 162
G ++L E+ V
Sbjct: 189 GTINLSEFQHV 199
Score = 32.9 bits (75), Expect = 0.10
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 147 DKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTREEFAS 206
D D DG ++ + + + ED S M + +DID D + EF
Sbjct: 139 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQH 198
Query: 207 FL 208
+
Sbjct: 199 VI 200
Score = 31.0 bits (70), Expect = 0.43
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 22/143 (15%)
Query: 193 IDGDRALTREEFAS-FLHPEETAHMRDLVVVETMEDI-----DKDKDGKVSLREYIGDMF 246
+ + E + E+ + +L E I +S +++ +
Sbjct: 60 LLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDSLSFEDFLDLLS 119
Query: 247 RGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWI-----LPPDFDHSDAEA 301
DT + + F ++ D + DG ++ E++ + D S +E
Sbjct: 120 VFSDTATPDIKSHYA------FRIF-DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEM 172
Query: 302 RHL----IYESDSDADQKLTKDE 320
+ L + ESD D D + E
Sbjct: 173 KQLIDNILEESDIDRDGTINLSE 195
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 33.2 bits (76), Expect = 0.020
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYI 160
+ +GD+ L+++E L E ++ + V + M+++D++ DG+V +E++
Sbjct: 19 SGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFV 75
Score = 33.2 bits (76), Expect = 0.020
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYI 242
+ +GD+ L+++E L E ++ + V + M+++D++ DG+V +E++
Sbjct: 19 SGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFV 75
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 34.5 bits (80), Expect = 0.021
Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 13/130 (10%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRG-GD 250
D + D + +++ A R V E ++ + K+ G ++ ++
Sbjct: 35 DQNADGIIDKDDLRETFA----AMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKG 90
Query: 251 TDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDS 310
D ++ + F + D +G G + + ++ + + E +++
Sbjct: 91 ADPEDVI-------MGAFKVL-DPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPP 142
Query: 311 DADQKLTKDE 320
D +
Sbjct: 143 DVAGNVDYKN 152
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 32.8 bits (75), Expect = 0.025
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMR--DLVVVETMEDIDKDKDGKVSLREYI 160
+ +GD+ L+++E + E T + D + MED+D++KD +V+ +EY+
Sbjct: 20 SGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYV 74
Score = 32.8 bits (75), Expect = 0.025
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMR--DLVVVETMEDIDKDKDGKVSLREYI 242
+ +GD+ L+++E + E T + D + MED+D++KD +V+ +EY+
Sbjct: 20 SGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYV 74
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 32.9 bits (75), Expect = 0.028
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYIGDM 245
+ +GD+ L + E L E + + + M ++D ++D +V +EY +
Sbjct: 20 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
Query: 246 FR 247
Sbjct: 80 SC 81
Score = 32.5 bits (74), Expect = 0.033
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYI 160
+ +GD+ L + E L E + + + M ++D ++D +V +EY
Sbjct: 20 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 76
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 33.6 bits (78), Expect = 0.031
Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
+ D +GK+ E++ M R T ++ L ++ F + D G G++ +
Sbjct: 48 FNEADATGNGKIQFPEFLSMMGRRMKQTTSEDIL-------RQAFRTF-DPEGTGYIPKA 99
Query: 284 EVKNWILPPDFDHSDAEARHLIYESDSD 311
+++ +L E + ++++
Sbjct: 100 ALQDALLNLGDRLKPHEFAEFLGITETE 127
Score = 29.4 bits (67), Expect = 0.98
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
KE F ++ D GF+ +E ++ + A + E+D+ +
Sbjct: 9 KEAFELF-DSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGN 56
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 32.8 bits (75), Expect = 0.031
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPE----ETAHMRDLVVVETMEDIDKDKDGKVSLREYI 160
+ G L++ E L E V+ E + +D ++D +V +E+I
Sbjct: 22 SVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFI 78
Score = 32.8 bits (75), Expect = 0.031
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPE----ETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ G L++ E L E V+ E + +D ++D +V +E+I
Sbjct: 22 SVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFI 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.034
Identities = 43/259 (16%), Positives = 83/259 (32%), Gaps = 86/259 (33%)
Query: 66 W---DEYREKVYGF--LDEV--DAAELA-----------KDEDQGFSYKNMLNRDKRRWD 107
W D + + YGF LD V + L ++ ++ +++ +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 108 VADIDGDRALTREEFASFLHPEE----T-----AHMRDLVVVE--TMEDIDKDKDGKV-- 154
+ + + T +F + T A L ++E ED+ K K G +
Sbjct: 1706 IFK-EINEHSTS---YTFRSEKGLLSATQFTQPA----LTLMEKAAFEDL-KSK-GLIPA 1755
Query: 155 -------SLREY-----------IEVDAAELAKDEDQGFSYKNMLNRDKR-RWDVADIDG 195
SL EY IE E+ +G + + + RD+ R + I
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSIE-SLVEVVF--YRGMTMQVAVPRDELGRSNYGMI-- 1810
Query: 196 DRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSL-------REYIGDMFRG 248
A+ A+ E + +E + K V + ++Y+
Sbjct: 1811 --AINPGRVAASFSQE--------ALQYVVERVGKRTGWLVEIVNYNVENQQYVA----A 1856
Query: 249 GDTDGDEELPDWVKNEKEQ 267
GD + + + + K Q
Sbjct: 1857 GDLRALDTVTNVLNFIKLQ 1875
Score = 33.1 bits (75), Expect = 0.15
Identities = 22/139 (15%), Positives = 44/139 (31%), Gaps = 42/139 (30%)
Query: 56 HNP----------ED--KEKITWD--EYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNR 101
H+ +D K ++++ + + VY D D L+ + + + R
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE--RIVDCIIR 485
Query: 102 DKRRWDVADIDGDRALTREEFASFLH-----PEETAHMRDLVVVETMEDIDKDKDGKVSL 156
+W+ H P + + L ++KDG +
Sbjct: 486 LPVKWETTT-----------QFKATHILDFGPGGASGLGVLT--------HRNKDGT-GV 525
Query: 157 REYIEVDAAELAKDEDQGF 175
R I ++ D+D GF
Sbjct: 526 RV-IVAGTLDINPDDDYGF 543
Score = 29.6 bits (66), Expect = 2.2
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAE--ARHLIYESDSDADQKLTK-DEI 321
+EQF + +GF ++E + AE + L Y S K+ + D++
Sbjct: 34 QEQFNKILPEPTEGFAADDE----------PTTPAELVGKFLGYVSSLVEPSKVGQFDQV 83
Query: 322 L 322
L
Sbjct: 84 L 84
Score = 28.9 bits (64), Expect = 3.1
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 293 DFDHSDAEARHLIYESDSDADQKLTKDEILAKYDLFVGSQ-----ATDFGEAL-VRHDEF 346
F+ E E + D+ T E++ K+ +V S F + L + EF
Sbjct: 36 QFNKILPEP----TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 32.5 bits (74), Expect = 0.034
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRDL----VVVETMEDIDKDKDGKVSLREYI 160
+ +G LT+ E + E ++ V + ++D+D + D +V E+I
Sbjct: 19 SGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFI 75
Score = 32.5 bits (74), Expect = 0.034
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRDL----VVVETMEDIDKDKDGKVSLREYI 242
+ +G LT+ E + E ++ V + ++D+D + D +V E+I
Sbjct: 19 SGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFI 75
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 32.8 bits (75), Expect = 0.035
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 114 DRALTREEFASFLHPEETAHMRDL------VVVETMEDIDKDKDGKVSLREYI 160
D + + + + + + + E DK++D K+ E++
Sbjct: 23 DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFL 75
Score = 32.8 bits (75), Expect = 0.035
Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 196 DRALTREEFASFLHPEETAHMRDL------VVVETMEDIDKDKDGKVSLREYI 242
D + + + + + + + E DK++D K+ E++
Sbjct: 23 DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFL 75
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 32.5 bits (74), Expect = 0.042
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPE----ETAHMRDLVVVETMEDIDKDKDGKVSLREYI 160
+ +GD+ L++ E LH E + + + + M +D++ D +V +EY
Sbjct: 21 SSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYA 77
Score = 32.5 bits (74), Expect = 0.042
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPE----ETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ +GD+ L++ E LH E + + + + M +D++ D +V +EY
Sbjct: 21 SSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYA 77
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 33.3 bits (77), Expect = 0.045
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFR----GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFM 280
++++D+D G V E++ M R +EEL + F M+ DKN DG++
Sbjct: 61 IDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEEL-------SDLFRMF-DKNADGYI 112
Query: 281 DEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
D EE+K + ++ + L+ + D + D ++ DE
Sbjct: 113 DLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDE 152
Score = 27.9 bits (63), Expect = 2.9
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 143 MEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTRE 202
++++D+D G V E++ + KD+ +G S + + + + D + D + E
Sbjct: 61 IDEVDEDGSGTVDFDEFLVM-MVRSMKDDSKGKSEEEL----SDLFRMFDKNADGYIDLE 115
Query: 203 EFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 240
E L + + + E M+D DK+ DG++ E
Sbjct: 116 ELKIMLQ-ATGETITEDDIEELMKDGDKNNDGRIDYDE 152
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 32.1 bits (73), Expect = 0.050
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYI 160
+ +GD+ L++ E L+ E T + ++V + M D+D +KD +V E++
Sbjct: 20 SGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFV 76
Score = 32.1 bits (73), Expect = 0.050
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYI 242
+ +GD+ L++ E L+ E T + ++V + M D+D +KD +V E++
Sbjct: 20 SGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFV 76
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 32.1 bits (73), Expect = 0.050
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 196 DRALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYIGDMFR 247
LT+E+ + E + + L V + M+D+D+ +DGKV + + +
Sbjct: 22 KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAG 77
Score = 32.1 bits (73), Expect = 0.054
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 114 DRALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYI 160
LT+E+ + E + + L V + M+D+D+ +DGKV + +
Sbjct: 22 KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFF 72
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 32.8 bits (76), Expect = 0.054
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 223 ETMEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMD 281
E +E + + G ++ ++ TD ++ + + FA + D+ GF+
Sbjct: 43 EYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVI-------RNAFACF-DEEASGFIH 94
Query: 282 EEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E+ ++ + +D E + E+ D E
Sbjct: 95 EDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVE 133
Score = 27.1 bits (61), Expect = 5.9
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESD 309
KE F M D+N DGF+D+E++ + + + +D ++ E+
Sbjct: 10 KEAFNMI-DQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP 53
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 32.5 bits (74), Expect = 0.055
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 106 WDVADIDGDRALTREEFASFLH 127
W+++DID D L R+EFA +
Sbjct: 54 WELSDIDHDGMLDRDEFAVAMF 75
Score = 32.5 bits (74), Expect = 0.055
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 188 WDVADIDGDRALTREEFASFLH 209
W+++DID D L R+EFA +
Sbjct: 54 WELSDIDHDGMLDRDEFAVAMF 75
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 33.6 bits (77), Expect = 0.059
Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 18/130 (13%)
Query: 186 RRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVET----MEDIDKDKDGKVSLREY 241
+ A D + +E L A +ET + +D+D G + E+
Sbjct: 36 YGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
Query: 242 IGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEA 301
EL + ++ F + D + G +D +E++ + F S
Sbjct: 96 K-------------ELWAVLNGWRQHFISF-DTDRSGTVDPQELQKALTTMGFRLSPQAV 141
Query: 302 RHLIYESDSD 311
+ ++
Sbjct: 142 NSIAKRYSTN 151
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 32.9 bits (76), Expect = 0.061
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 11/96 (11%)
Query: 222 VETMEDIDKDKDGKVSLREY---IGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDG 278
V K + L E +M +E E F + D+ G G
Sbjct: 49 VHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEF-------MEAFKTF-DREGQG 100
Query: 279 FMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQ 314
+ E++N + ++ + + D D
Sbjct: 101 LISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDI 136
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 32.2 bits (73), Expect = 0.061
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMR----DLVVVETMEDIDKDKDGKVSLREYI 160
+ +GD+ L + E L E + + + + M ++D ++D +V +EY
Sbjct: 23 SGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 79
Score = 32.2 bits (73), Expect = 0.061
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMR----DLVVVETMEDIDKDKDGKVSLREYI 242
+ +GD+ L + E L E + + + + M ++D ++D +V +EY
Sbjct: 23 SGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 79
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 33.0 bits (76), Expect = 0.062
Identities = 12/95 (12%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 226 EDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEV 285
D ++L + + + + D ++ + F ++ DK G + ++
Sbjct: 48 ADSSLRDASSLTLDQIT-GLIEVNEKELDATTKAKTEDFVKAFQVF-DKESTGKVSVGDL 105
Query: 286 KNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+ + +DAE L+ + D++ ++ +
Sbjct: 106 RYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKK 140
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 34.1 bits (77), Expect = 0.067
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 255 EELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQ 314
++L W+ + + DKN D M+ +E+K+++ + D AR + E D
Sbjct: 7 QKLQHWIHSCLRKA----DKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTD 62
Query: 315 KLTKDEILAKYDLF 328
L +EI Y +
Sbjct: 63 SLEDEEIETFYKML 76
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 31.7 bits (72), Expect = 0.068
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRDL----VVVETMEDIDKDKDGKVSLREYI 160
+ +GD+ L + E ++ E + + ++ VV + ME +D + DG+ +E++
Sbjct: 19 SGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFM 75
Score = 31.7 bits (72), Expect = 0.068
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRDL----VVVETMEDIDKDKDGKVSLREYI 242
+ +GD+ L + E ++ E + + ++ VV + ME +D + DG+ +E++
Sbjct: 19 SGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFM 75
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 31.8 bits (72), Expect = 0.087
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 191 ADIDGDR-ALTREEFASFLHPE-----ETAHMRDLVVVETMEDIDKDKDGKVSLREYIGD 244
+ G L + EF + + + + + V+ MED+D + D ++S E+I
Sbjct: 22 SVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIML 81
Query: 245 MFR 247
M R
Sbjct: 82 MAR 84
Score = 31.8 bits (72), Expect = 0.094
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 109 ADIDGDR-ALTREEFASFLHPE-----ETAHMRDLVVVETMEDIDKDKDGKVSLREYI 160
+ G L + EF + + + + + V+ MED+D + D ++S E+I
Sbjct: 22 SVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFI 79
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 30.5 bits (70), Expect = 0.090
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 228 IDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYR--DKNGDGFMDEEE 284
DK+KDGK+SL E+ E++ + D +G+G ++ +E
Sbjct: 10 FDKNKDGKLSLDEFREVALAFSPYFTQEDIVK----------FFEEIDVDGNGELNADE 58
Score = 28.6 bits (65), Expect = 0.52
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
K F + DKN DG + +E + L + + E D D +
Sbjct: 4 KRVFEKF-DKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGN 51
Score = 26.3 bits (59), Expect = 3.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 18 DKIDKDKDGFVSKEELKE 35
+K DK+KDG +S +E +E
Sbjct: 8 EKFDKNKDGKLSLDEFRE 25
Score = 25.1 bits (56), Expect = 8.1
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
D + D L+ +EF + + +V+ E+ID D +G+++ E+
Sbjct: 11 DKNKDGKLSLDEFREVAL-AFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 33.6 bits (76), Expect = 0.095
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 106 WDVADIDGDRALTREEFASFLH 127
W ++D+D D L EEFA H
Sbjct: 497 WKLSDVDRDGMLDDEEFALASH 518
Score = 33.6 bits (76), Expect = 0.095
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 188 WDVADIDGDRALTREEFASFLH 209
W ++D+D D L EEFA H
Sbjct: 497 WKLSDVDRDGMLDDEEFALASH 518
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 31.6 bits (72), Expect = 0.11
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 254 DEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
DE+LP ++ KE++ + D NG+G +D +K + + E + LI E S +
Sbjct: 24 DEDLPSKLEGFKEKYMEF-DLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSG 82
Query: 314 QKLTKDE 320
+ + +
Sbjct: 83 ETFSYPD 89
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 30.7 bits (70), Expect = 0.12
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
KE F ++ DK+ D + EE+ + + + + ++ + D D K ++
Sbjct: 17 KEAFQLF-DKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQET 71
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 31.3 bits (71), Expect = 0.12
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 191 ADIDGDR-ALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYIGDM 245
A DG+ +++ EF F++ E A ++ V+ M+ +D D DG++ +E++ +
Sbjct: 23 AGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLI 82
Query: 246 FR 247
Sbjct: 83 GG 84
Score = 31.0 bits (70), Expect = 0.13
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 109 ADIDGDR-ALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYI 160
A DG+ +++ EF F++ E A ++ V+ M+ +D D DG++ +E++
Sbjct: 23 AGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFL 79
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 30.5 bits (70), Expect = 0.13
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
KE F ++ D N G +D E+K + FD E L+ E D + + + D+
Sbjct: 10 KEAFDLF-DTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDD 64
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 31.1 bits (71), Expect = 0.14
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 78 DEVDAAELAKDEDQGFSYKNMLNRD----------KRRWDVADIDGDRALTREEFASFLH 127
+++ AA + F + K + D D L +E FL
Sbjct: 9 EDIAAALQECQDPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQ 68
Query: 128 --PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEV 162
+ + + M+ D D DGK+ E+ E+
Sbjct: 69 KFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
Score = 30.3 bits (69), Expect = 0.29
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 161 EVDAAELAKDEDQGFSYKNMLNRD----------KRRWDVADIDGDRALTREEFASFLH- 209
++ AA + F + K + D D L +E FL
Sbjct: 10 DIAAALQECQDPDTFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQK 69
Query: 210 -PEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
+ + + M+ D D DGK+ E+
Sbjct: 70 FQSDARELTESETKSLMDAADNDGDGKIGADEFQ 103
Score = 28.4 bits (64), Expect = 1.1
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNW---ILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
K+ F D + G++D +E+K + + +++E + L+ +D+D D K+ DE
Sbjct: 44 KDIFRFI-DNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADE 101
Score = 28.0 bits (63), Expect = 1.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 20 IDKDKDGFVSKEELKEWIQ 38
ID D+ G++ +ELK ++Q
Sbjct: 50 IDNDQSGYLDGDELKYFLQ 68
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
KE F M D + G + +E+K+ + + ++E + L+ +D D
Sbjct: 26 KELFKMI-DTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS 73
Score = 25.9 bits (58), Expect = 7.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 18 DKIDKDKDGFVSKEELKE 35
ID D G ++ +ELK+
Sbjct: 30 KMIDTDNSGTITFDELKD 47
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 30.9 bits (70), Expect = 0.16
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 194 DGDRALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYIGDMFR 247
+++ F L E + D + ++++D + DG++S EY +
Sbjct: 26 LVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGG 83
Score = 30.9 bits (70), Expect = 0.17
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 112 DGDRALTREEFASFLHPEETAHMRD----LVVVETMEDIDKDKDGKVSLREYI 160
+++ F L E + D + ++++D + DG++S EY
Sbjct: 26 LVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYW 78
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 31.1 bits (71), Expect = 0.17
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 12/93 (12%)
Query: 78 DEVDAAELAKDEDQGFSYKN-----MLNRD-----KRRWDVADIDGDRALTREEFASFL- 126
++++A + F+YK+ L+ K+ + + D D + EE FL
Sbjct: 10 KDIESALSSCQAADSFNYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLK 69
Query: 127 -HPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 158
+ + D D DGK+ + E
Sbjct: 70 NFSSSARVLTSAETKAFLAAGDTDGDGKIGVEE 102
Score = 30.7 bits (70), Expect = 0.18
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 185 KRRWDVADIDGDRALTREEFASFL--HPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 240
K+ + + D D + EE FL + + D D DGK+ + E
Sbjct: 45 KKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEE 102
Score = 27.2 bits (61), Expect = 3.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 20 IDKDKDGFVSKEELKE 35
+D+DK GF+ +EEL+
Sbjct: 51 LDQDKSGFIEEEELQL 66
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 30.3 bits (69), Expect = 0.22
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 235 KVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDF 294
S E + DTD +EE+ +E F + DK+G+G++ E+++ +
Sbjct: 9 HGSSGENLYFQSLMKDTDSEEEI-------REAFRVE-DKDGNGYISAAELRHVMTNLGE 60
Query: 295 DHSDAEARHLIYESDSDAD 313
+D E +I E+D D D
Sbjct: 61 KLTDEEVDEMIREADIDGD 79
Score = 26.5 bits (59), Expect = 4.3
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 229 DKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
DKD +G +S E M G+ DEE+ + ++ D +GDG ++ EE
Sbjct: 39 DKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA--------DIDGDGQVNYEE 86
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 31.3 bits (72), Expect = 0.24
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
M +ID D + + E++ M R D ++EL E F ++ DKNGDG +
Sbjct: 53 MNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQEL-------LEAFKVF-DKNGDGLISAA 104
Query: 284 EVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E+K+ + +DAE ++ E D ++ +
Sbjct: 105 ELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQ 140
Score = 27.4 bits (62), Expect = 4.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSD 311
KE FA++ DK+ G + E+ + S+AE L+ E D D
Sbjct: 14 KEAFALF-DKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVD 59
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 30.9 bits (71), Expect = 0.24
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 223 ETMEDIDKDKDGKVSLREYIGDMFR---GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGF 279
+ +I+ +V + +++ + R EE + F ++ DK+ G
Sbjct: 41 AEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEF-------VKGFQVF-DKDATGM 92
Query: 280 MDEEEVKNWILPPDFDHSDAEARHLIYESDSD 311
+ E++ + S+ E L+
Sbjct: 93 IGVGELRYVLTSLGEKLSNEEMDELLKGVPVK 124
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 31.1 bits (70), Expect = 0.26
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 108 VADIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKVSL 156
+ D DG+ L E ++ + P + ++ + D DK+ DG +
Sbjct: 76 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDY 135
Query: 157 REYIE 161
E+ +
Sbjct: 136 AEFAK 140
Score = 30.7 bits (69), Expect = 0.36
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 190 VADIDGDRALTREEFASFL-----------HPEETAHMRDLVVVETMEDIDKDKDGKVSL 238
+ D DG+ L E ++ + P + ++ + D DK+ DG +
Sbjct: 76 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDY 135
Query: 239 REYIGDM 245
E+ +
Sbjct: 136 AEFAKSL 142
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 30.2 bits (69), Expect = 0.34
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 226 EDIDK-----DKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFM 280
+DI+K G + + + G TD ++ KE F + DK+ GF+
Sbjct: 9 DDINKAISAFKDPGTFDYKRFFHLVGLKGKTD--AQV-------KEVFEIL-DKDQSGFI 58
Query: 281 DEEEVKN---WILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+EEE+K D +D E + L+ DSD D K+ DE
Sbjct: 59 EEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADE 101
Score = 26.0 bits (58), Expect = 8.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 20 IDKDKDGFVSKEELKE 35
+DKD+ GF+ +EELK
Sbjct: 50 LDKDQSGFIEEEELKG 65
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 29.5 bits (67), Expect = 0.44
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
K F M+ D +G G + +E+ + + + E +I E D D
Sbjct: 23 KAAFDMF-DADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGS 70
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 30.6 bits (70), Expect = 0.45
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 223 ETMEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMD 281
+ + + K+ G ++ ++ TD +E + + FAM+ D+ ++
Sbjct: 54 KELTAMLKEAPGPLNFTMFLSIFSDKLSGTDSEETI-------RNAFAMF-DEQETKKLN 105
Query: 282 EEEVKNWILPPDFDHSDAEARHLIYESDSD 311
E +K+ + + + E R E+ +
Sbjct: 106 IEYIKDLLENMGDNFNKDEMRMTFKEAPVE 135
Score = 27.1 bits (61), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESD 309
KE F+M D + DGF+ +E++K D E ++ E+
Sbjct: 21 KEAFSMI-DVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP 64
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 29.5 bits (66), Expect = 0.45
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 103 KRRWDVADIDGDRALTREEFASFL---------------HPEETAHMRDLVVVETMEDID 147
K + + DI+ D L +E + E R + M+++D
Sbjct: 23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVD 82
Query: 148 KDKDGKVSLREYIE 161
++D V+L E++
Sbjct: 83 TNQDRLVTLEEFLA 96
Score = 28.4 bits (63), Expect = 1.1
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Query: 185 KRRWDVADIDGDRALTREEFASFL---------------HPEETAHMRDLVVVETMEDID 229
K + + DI+ D L +E + E R + M+++D
Sbjct: 23 KTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVD 82
Query: 230 KDKDGKVSLREYI 242
++D V+L E++
Sbjct: 83 TNQDRLVTLEEFL 95
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 30.3 bits (68), Expect = 0.51
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 254 DEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
DE+LP ++ K ++ + D NG+G +D +K + + E + LI E S ++
Sbjct: 40 DEDLPSKLEAFKVKYMEF-DLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSE 98
Query: 314 QKLTKDE 320
+ + +
Sbjct: 99 ETFSYSD 105
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 29.6 bits (67), Expect = 0.56
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 103 KRRWDVADIDGDRALTREEFASFLH--PEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 160
K + + D D + +E FL + + D D DGK+ E+
Sbjct: 44 KEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQ 103
Query: 161 E 161
E
Sbjct: 104 E 104
Score = 29.2 bits (66), Expect = 0.65
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 185 KRRWDVADIDGDRALTREEFASFLH--PEETAHMRDLVVVETMEDIDKDKDGKVSLREYI 242
K + + D D + +E FL + + D D DGK+ E+
Sbjct: 44 KEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQ 103
Score = 28.8 bits (65), Expect = 0.82
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKN---WILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
KE F + D + GF++E+E+K + +E + + +D D D K+ +E
Sbjct: 44 KEIFRIL-DNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEE 101
Score = 26.9 bits (60), Expect = 3.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 20 IDKDKDGFVSKEELKE 35
+D D+ GF+ ++ELK
Sbjct: 50 LDNDQSGFIEEDELKY 65
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 29.4 bits (66), Expect = 0.57
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 192 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDT 251
D ++REEF + + + D ++ + G++ +++ F
Sbjct: 34 DTMKTNTISREEFRAICN-RRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL-SRFSSETA 91
Query: 252 DGDEELPDWVKNEK 265
D ++
Sbjct: 92 ATPMATGDSAVAQR 105
Score = 29.0 bits (65), Expect = 0.79
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 19 KIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDE 68
D K +S+EE + + + W K ++ + +
Sbjct: 32 NFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPD 81
Score = 29.0 bits (65), Expect = 0.83
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDEILAK 324
++F + D + EE + +D + L E +A +L + L++
Sbjct: 27 TQEFENF-DTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSR 85
Query: 325 YD 326
+
Sbjct: 86 FS 87
Score = 27.8 bits (62), Expect = 2.1
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 110 DIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
D ++REEF + + + D ++ + G++ +++
Sbjct: 34 DTMKTNTISREEFRAICN-RRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLS 84
Score = 27.4 bits (61), Expect = 2.4
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 10/88 (11%)
Query: 197 RALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDMFRGGDTDGDEE 256
A + + LH T+H + + E+ D K +S E+ R DE+
Sbjct: 4 MATADRDILARLHKAVTSHYHAIT--QEFENFDTMKTNTISREEFRAICNRRVQILTDEQ 61
Query: 257 LPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
++ N G + +
Sbjct: 62 F--------DRLWNEMPVNAKGRLKYPD 81
Score = 25.9 bits (57), Expect = 9.8
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 17/103 (16%)
Query: 115 RALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVS---LREYIEVDAAELAKDE 171
A + + LH T+H + + E+ D K +S R L ++
Sbjct: 4 MATADRDILARLHKAVTSHYHAIT--QEFENFDTMKTNTISREEFRAICNRRVQILTDEQ 61
Query: 172 DQGFSYKNMLNRDKRRWDVADIDGDRALTREEFASFLHPEETA 214
+ + N ++ L +F S E A
Sbjct: 62 -----FDRLWNE-------MPVNAKGRLKYPDFLSRFSSETAA 92
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 29.9 bits (68), Expect = 0.57
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 226 EDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
+ I + ++ +Y+ + D D EEL + FA + D N G++ + +
Sbjct: 54 KKIKELYGDNLTYEQYLEYLSICVHDKDNVEEL-------IKMFAHF-DNNCTGYLTKSQ 105
Query: 285 VKNWILPPDFDHSDAEARHLIYESDSD 311
+KN + +D EA + S+
Sbjct: 106 MKNILTTWGDALTDQEAIDALNAFSSE 132
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 29.2 bits (66), Expect = 0.71
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 103 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVET---MEDIDKDKDGKVSLREY 159
K+ + + D D + +E S L ++ RDL ET M DKD DGK+ + E+
Sbjct: 44 KKVFHILDKDKSGFIEEDELGSILK-GFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEF 102
Query: 160 IEV 162
+
Sbjct: 103 STL 105
Score = 28.8 bits (65), Expect = 1.1
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNW---ILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
K+ F + DK+ GF++E+E+ + D S E + L+ D D D K+ +E
Sbjct: 44 KKVFHIL-DKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEE 101
Score = 28.4 bits (64), Expect = 1.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 185 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVET---MEDIDKDKDGKVSLRE 240
K+ + + D D + +E S L ++ RDL ET M DKD DGK+ + E
Sbjct: 44 KKVFHILDKDKSGFIEEDELGSILK-GFSSDARDLSAKETKTLMAAGDKDGDGKIGVEE 101
Score = 27.6 bits (62), Expect = 2.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 19 KIDKDKDGFVSKEELKEWIQ 38
+DKDK GF+ ++EL ++
Sbjct: 49 ILDKDKSGFIEEDELGSILK 68
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 30.0 bits (68), Expect = 0.72
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 18/130 (13%)
Query: 186 RRWDVADIDGDRALTREEFASFL---HPEETAHMRDLVVVETM-EDIDKDKDGKVSLREY 241
+ A D + EE L T L M +D+D GK+ +
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 242 IGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEA 301
+ KE F D++G G ++ E++ I + S
Sbjct: 63 KELWAA-------------LNAWKENFMTV-DQDGSGTVEHHELRQAIGLMGYRLSPQTL 108
Query: 302 RHLIYESDSD 311
++ +
Sbjct: 109 TTIVKRYSKN 118
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 29.9 bits (68), Expect = 0.74
Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 12/97 (12%)
Query: 227 DIDKDKDGKVSLREYIGDMFRGG---DTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEE 283
D+ K +V ++ + E+ E F ++ DK G+G +
Sbjct: 56 KSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDY-------LEGFRVF-DKEGNGKVMGA 107
Query: 284 EVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
E+++ + ++ E ++ D++ + +
Sbjct: 108 ELRHVLTTLGEKMTEEEVETVL-AGHEDSNGCINYEA 143
Score = 27.2 bits (61), Expect = 5.6
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
KE F ++ D+ GDG + + + + + ++AE ++ SD
Sbjct: 13 KEAFELF-DRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEL 60
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 28.3 bits (64), Expect = 1.2
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 231 DKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKN--- 287
+G + +++ + + ++ K+ F D + GF++EEE+K
Sbjct: 20 KAEGSFNHKKFFALVGLKAMSA--NDV-------KKVFKAI-DADASGFIEEEELKFVLK 69
Query: 288 WILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
D +DAE + + +D D D K+ DE
Sbjct: 70 SFAADGRDLTDAETKAFLKAADKDGDGKIGIDE 102
Score = 26.0 bits (58), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 20 IDKDKDGFVSKEELKE 35
ID D GF+ +EELK
Sbjct: 51 IDADASGFIEEEELKF 66
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 28.4 bits (64), Expect = 1.2
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 103 KRRWDVADIDGDRALTREEFASFLHP--EETAHMRDLVVVETMEDIDKDKDGKVSLRE 158
K+ + V D D + +E FL + D ++ D D DG + + E
Sbjct: 45 KKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDE 102
Score = 28.4 bits (64), Expect = 1.2
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 185 KRRWDVADIDGDRALTREEFASFLHP--EETAHMRDLVVVETMEDIDKDKDGKVSLRE 240
K+ + V D D + +E FL + D ++ D D DG + + E
Sbjct: 45 KKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDE 102
Score = 26.8 bits (60), Expect = 3.9
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 231 DKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKN--- 287
+ + + + + + +++ K+ F + D++ GF++E+E+K
Sbjct: 20 EAADSFNYKAFFAKVGLTAKSA--DDI-------KKAFFVI-DQDKSGFIEEDELKLFLQ 69
Query: 288 WILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+DAE + + DSD D + DE
Sbjct: 70 VFSAGARALTDAETKAFLKAGDSDGDGAIGVDE 102
Score = 26.8 bits (60), Expect = 4.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 20 IDKDKDGFVSKEELKE 35
ID+DK GF+ ++ELK
Sbjct: 51 IDQDKSGFIEEDELKL 66
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 29.5 bits (65), Expect = 1.5
Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 11/158 (6%)
Query: 19 KIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFLD 78
K+ D G + T+ D E E ++K+
Sbjct: 74 KLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKI 133
Query: 79 EVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDG-DRALTREEFASFLHPEETAH--MR 135
+ L + +Y + ++ D D L+ E A P
Sbjct: 134 HENEKRLEAGDHPEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTT 193
Query: 136 DLVVVETMEDIDKDKDGKVSLREYI---EVDAAELAKD 170
E D D D ++L E+ + ++ KD
Sbjct: 194 RF-----FETCDLDNDKYIALDEWAGCFGIKQKDIDKD 226
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 27.6 bits (62), Expect = 1.9
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 250 DTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESD 309
DTD +EEL KE F ++ DK+ +G++ E+++ ++ +D E +I E+D
Sbjct: 4 DTDAEEEL-------KEAFKVF-DKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEAD 55
Query: 310 SDAD 313
D D
Sbjct: 56 LDGD 59
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 28.6 bits (65), Expect = 2.0
Identities = 15/90 (16%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 223 ETMEDIDKDKDGKVSLREYIGDMFR-GGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMD 281
+ + + K+ G+++ ++ TD ++ L + F+M+ D++G GF+
Sbjct: 52 DELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDAL-------RNAFSMF-DEDGQGFIP 103
Query: 282 EEEVKNWILPPDFDHSDAEARHLIYESDSD 311
E+ +K+ + + S E +++ ++
Sbjct: 104 EDYLKDLLENMGDNFSKEEIKNVWKDAPLK 133
Score = 26.3 bits (59), Expect = 8.8
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESD 309
KE F M D++ DGF+ E++K+ D E ++ E
Sbjct: 19 KEAFTMI-DQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP 62
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 27.2 bits (61), Expect = 2.0
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKN------WILPPDFDHSDAEARHLIYESDSDAD 313
+ F D NGDG++ E++ D + LI +D ++D
Sbjct: 10 EAAFKKL-DANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSD 63
Score = 26.8 bits (60), Expect = 3.4
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 107 DVADIDGDRALTREEFASFLH-----PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIE 161
D +GD +T E +F+ + + ++ DK+ DGK+S E++
Sbjct: 14 KKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLN 73
Query: 162 V 162
Sbjct: 74 A 74
Score = 26.4 bits (59), Expect = 4.7
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 189 DVADIDGDRALTREEFASFLH-----PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIG 243
D +GD +T E +F+ + + ++ DK+ DGK+S E++
Sbjct: 14 KKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLN 73
Query: 244 DM 245
Sbjct: 74 AN 75
Score = 25.7 bits (57), Expect = 8.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 18 DKIDKDKDGFVSKEELKE 35
K+D + DG+V+ EL+
Sbjct: 14 KKLDANGDGYVTALELQT 31
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 27.9 bits (63), Expect = 2.1
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 226 EDIDK-----DKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFM 280
D+ +E+ + + +++ K+ F + D++ GF+
Sbjct: 9 ADVAAALAACSAADSFKHKEFFAKVGLASKSL--DDV-------KKAFYVI-DQDKSGFI 58
Query: 281 DEEEVKN---WILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
+E+E+K P +DAE + + + D D D + DE
Sbjct: 59 EEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDE 101
Score = 26.4 bits (59), Expect = 5.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 20 IDKDKDGFVSKEELKE 35
ID+DK GF+ ++ELK
Sbjct: 50 IDQDKSGFIEEDELKL 65
Score = 26.0 bits (58), Expect = 8.1
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 110 DIDGDRALTREEFASFL--HPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 158
D D + +E FL + D + D DKD DG + + E
Sbjct: 51 DQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDE 101
Score = 26.0 bits (58), Expect = 8.1
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 192 DIDGDRALTREEFASFL--HPEETAHMRDLVVVETMEDIDKDKDGKVSLRE 240
D D + +E FL + D + D DKD DG + + E
Sbjct: 51 DQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDE 101
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 28.3 bits (64), Expect = 2.1
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSD 311
KE F ++ D+ GD + +V + + ++AE ++ +
Sbjct: 11 KEAFLLF-DRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKE 56
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 27.7 bits (62), Expect = 2.4
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 12 KDGLIVDKIDKDKDGFVSKEELKEWIQ 38
K+ ++ + KD FVS +L I+
Sbjct: 104 KNKTMLAR----KDHFVSSNDLIALIK 126
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 27.9 bits (63), Expect = 3.2
Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSD 311
+E F ++ DK+ DG + EE+ + + + ++AE + + ++
Sbjct: 8 QECFQIF-DKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAK 53
Score = 27.1 bits (61), Expect = 4.5
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 225 MEDIDKDKDGKVSLREYIGDMFRGGDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMDEEE 284
++ + + + + T+ +E+ + F DK G+G + E E
Sbjct: 47 KGQLNAKEFDLATFKTVYRKPIKT-PTEQSKEM-------LDAFRAL-DKEGNGTIQEAE 97
Query: 285 VKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
++ +L + +E L+ E D + +
Sbjct: 98 LRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYES 133
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 26.5 bits (59), Expect = 4.1
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 192 DIDGDRALTREEFASFLH------PEETAHMRDLVVVETMEDIDKDKDGKVSLREYIGDM 245
D +GD ++ E L P+E M M +ID D DG +S E+
Sbjct: 21 DTNGDGKISSSELGDALKTLGSVTPDEVRRM--------MAEIDTDGDGFISFDEFTDFA 72
Query: 246 FRGGDTDGD 254
D
Sbjct: 73 RANRGLVKD 81
Score = 25.7 bits (57), Expect = 7.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESDSDAD 313
+ F + D NGDG + E+ + L + E R ++ E D+D D
Sbjct: 14 ERIFKRF-DTNGDGKISSSELGD-ALKTLGSVTPDEVRRMMAEIDTDGD 60
>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase,
bifunctional enzyme, hydrolase; HET: BGC; 2.25A
{Uncultured bacterium} PDB: 3fw6_A
Length = 535
Score = 28.0 bits (61), Expect = 5.6
Identities = 41/282 (14%), Positives = 82/282 (29%), Gaps = 28/282 (9%)
Query: 16 IVDKIDKDKDGFVSKEELKEWIQFTQKRY------------IHNDVESQWRTHNPEDKEK 63
+ D + V + W Q ++ + N+ + TH
Sbjct: 162 VTGNNPNDANTLVDSTFQQGWAQHLVSQWGTAAGGGLRYYILDNEPSIWFSTHRDVHPVG 221
Query: 64 ITWDEYREKVYGFLD---EVD-AAELAKDEDQGFSYKNMLNRDKRRWDVADIDGDRALTR 119
T DE R+K+ + VD +A + E+ G+S + D++ +
Sbjct: 222 PTMDEIRDKMLDYGAKIKTVDPSALIVGPEEWGWSGYTLSGYDQQYGGLHGWSFMPDRNN 281
Query: 120 EEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQGFSYKN 179
+L P +R + +D S+ Y +
Sbjct: 282 HGGWDYL-PWLLDQLRQNNLSTGRRLLD-----VFSVHYYPQGGEFGNDTSSA---MQLR 332
Query: 180 MLNRDKRRWDVADIDGDRALTREEFASFLHPEETAHMRDLVVVETMEDI--DKDKDGKVS 237
+ WD ID + + L + + + T + + +G +
Sbjct: 333 RNRSTRSLWDPNYIDETWINDKVQLIPRLKNWVSTYYPGTLTAITEYNWGAESHINGATT 392
Query: 238 LREYIGDMFRGGDTDGDE-ELPDWVKNEKEQFAMYRDKNGDG 278
+ +G R G PD + MYR+ +G+
Sbjct: 393 QADILGIFGREGLDMAARWTTPDTATPTYKAIKMYRNYDGNK 434
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A
{Bacillus subtilis}
Length = 129
Score = 26.8 bits (60), Expect = 6.4
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 50 ESQWRTHNPEDKEKITWDEYREKVYGFLDEVDAAELAKDED 90
+ + W R+ V LD +LA D
Sbjct: 96 DEEPAKRE-------LWIRIRDAVKEVLDSTTLEDLASYTD 129
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 27.6 bits (62), Expect = 6.7
Identities = 14/137 (10%), Positives = 34/137 (24%), Gaps = 25/137 (18%)
Query: 116 ALTREEFASFLHPEETAHMRDLVVVETMEDIDKDKDGKVSLREYIEVDAAELAKDEDQG- 174
LT + ++ V E + + + D + S + + +
Sbjct: 303 ILTVMLATRNFSVRKQEIIK---VTEQLIEAISNGDFE-SYTKMCDPGMTAFEPEALGNL 358
Query: 175 --------FSYKNMLNRDKRRWDVA--------DIDGDRALTREEFASFLHPEETAHMRD 218
F ++N+ +R+ + D + +L
Sbjct: 359 VEGLDFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPR--- 415
Query: 219 LVVVETMEDIDKDKDGK 235
+ +DGK
Sbjct: 416 -TAQSEETRVWHRRDGK 431
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Length = 170
Score = 26.9 bits (60), Expect = 6.8
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 12 KDGLIVDKIDKDKDGFVSKEELKEWIQFTQKRY-IHNDVESQWRTHNPEDKEKITWDEYR 70
K +++ + ++K V+ EEL++ + + I D + +E++ W +
Sbjct: 93 KRDRVIEVLAQEKGISVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILK 152
Query: 71 EKVYGFLDE 79
KV L +
Sbjct: 153 RKVLDLLLQ 161
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 27.3 bits (61), Expect = 6.8
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 265 KEQFAMYRDKNGDGFMDEEEVKNWILPPDFDHSDAEARHLIYESD 309
KE F + D++ DGF+ + +++ ++ E ++ E+
Sbjct: 60 KEAFQLI-DQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAP 103
Score = 26.9 bits (60), Expect = 7.8
Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 223 ETMEDIDKDKDGKVSLREYIGDMFRG-GDTDGDEELPDWVKNEKEQFAMYRDKNGDGFMD 281
+ ++ + + G ++ ++ TD ++ + F ++ + GDG
Sbjct: 93 QELDSMVAEAPGPINFTMFLTIFGDRIAGTDEEDVI-------VNAFNLFDE--GDGKCK 143
Query: 282 EEEVKNWILPPDFDHSDAEARHLIYESDSDADQKLTKDE 320
EE +K + S E + E+ D + + +
Sbjct: 144 EETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKK 182
>1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside
ribostamycin; HET: COA RIO; 2.00A {Salmonella
enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A*
2vbq_A*
Length = 165
Score = 27.1 bits (60), Expect = 6.9
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 160 IEVDAAELAKDEDQGFSYKNMLNRDKRRWDVADIDGD-----RALTREEFASFLHPEETA 214
+ D+ + +L D +A DG A R ++ +
Sbjct: 37 LRKQLWPGHPDDAHLADGEEILQADHLASFIAMADGVAIGFADASIRHDYVNGCDSSPVV 96
Query: 215 HMRDLVVVE 223
+ + V+
Sbjct: 97 FLEGIFVLP 105
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 26.5 bits (59), Expect = 7.5
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 11 DKDGLIVDKIDKDKDGFVSKEELKEWIQ 38
++ G I G ++ E+LKEW +
Sbjct: 122 NEKGEIEKTKI----GPMTAEQLKEWTE 145
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated
protein, nascent chain, cell division, isomerase; 2.7A
{Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1
PDB: 2vrh_A 1w2b_5
Length = 432
Score = 27.2 bits (61), Expect = 8.0
Identities = 12/90 (13%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 12 KDGLIVDKIDKDKDGFVSKEELKEWIQFTQKRYIHNDVESQWRTHNPEDKEKITWDEYRE 71
GL++ ++ + + +E +K I+ Y ++ + N E + + E
Sbjct: 346 VVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEE 405
Query: 72 KVYGFLDEVDAAELAKDEDQGFSYKNMLNR 101
+ + AK ++ ++ ++N+
Sbjct: 406 QAVEAV-----LAKAKVTEKETTFNELMNQ 430
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Arabidopsis
thaliana} SCOP: a.42.1.1
Length = 93
Score = 25.9 bits (57), Expect = 8.0
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 56 HNPEDKEKITWDEYREKVYGFLDEVDAAELAK 87
NP D D +KV+G +++ +++
Sbjct: 46 QNPNDPSFFNCDAALQKVFG-EEKLKFTMVSQ 76
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural
genomics, JOI for structural genomics, JCSG; HET: SO4;
2.06A {Listeria innocua}
Length = 159
Score = 26.5 bits (59), Expect = 8.0
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 50 ESQWRTHNPEDKEKITWDEYREKVYGFLDEVDAAELAKDEDQ 91
+ + W R V LD+ ++L K
Sbjct: 114 DEEAAQRE-------LWTRMRNAVRDVLDQTTLSDLLKHSTD 148
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 26.1 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 12 KDGLIVDKIDKDKDGFVSKEELKEWIQ 38
KDG +V+ GF KE L+E +
Sbjct: 79 KDGEVVET----SVGFKPKEALQELVN 101
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 27.3 bits (61), Expect = 9.2
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 12 KDGLIVDKIDKDKDGFVSKEELKEWIQFTQKRY-IHNDVESQWRTHNPEDKEKITWDEYR 70
K +++ + ++K V+ EEL++ + + I D + +E++ W +
Sbjct: 335 KRDRVIEVLAQEKGISVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILK 394
Query: 71 EKVYGFLDE 79
KV L +
Sbjct: 395 RKVLDLLLQ 403
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 25.8 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 12 KDGLIVDKIDKDKDGFVSKEELKEWIQ 38
KDG VDK GF KE L E +
Sbjct: 81 KDGQPVDK----VVGFQPKENLAEVLD 103
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 25.8 bits (57), Expect = 9.8
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 12 KDGLIVDKIDKDKDGFVSKEELKEWIQFTQKRYIH 46
+DG + G ++ EL+ + H
Sbjct: 80 RDGKVAKV----FSGIMNPRELQALYASIHHHHHH 110
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 27.2 bits (59), Expect = 9.9
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 43 RYIHNDVESQWRTHNPEDKEKITWDEYREKVYGFLDEVDAAELAKDEDQGFSYKNMLNRD 102
+ I DVE Q +D + D+ E D++D D++ + L
Sbjct: 258 KIISIDVELQNELDELDD--DVDDDDLEEVDLEDDDDLDDDSGDDDDENCGNSNEELRSG 315
Query: 103 KRRWDVADIDGDRALTREEFASFLHPEETAHMRDLV 138
+D + + + + E T +++L
Sbjct: 316 AADGSQSDSEDMDIIEGMDGTEEYNVELTQGIKELS 351
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.397
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,017,610
Number of extensions: 402830
Number of successful extensions: 2855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1827
Number of HSP's successfully gapped: 743
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.0 bits)