BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3181
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLP 104
P G L + +V AK +++ + MDPYV+L +++ G P WN+ +
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 105 QGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG 140
+G T + +I+D+ T D+ + A IP+ ++G
Sbjct: 68 EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 28/103 (27%)
Query: 50 NITVVQAKLVKNYGLVTK-----MDPYVRLRVGHCVYETHTDPSGGKF------------ 92
+ VV+ K++ GL K DPYVR+ T DP G
Sbjct: 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRV--------TLYDPMSGILTSVQTKTIKKSL 57
Query: 93 -PRWNKEV-FCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPI 133
P+WN+E+ F +LPQ I E++DE T D+ + +P+
Sbjct: 58 NPKWNEEILFRVLPQR-HRILFEVFDENRLTRDDFLGQVDVPL 99
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 26/102 (25%)
Query: 50 NITVVQAKLVKNYGLVTK-----MDPYVRLRVGHCVYETHTDPSGGKF------------ 92
N +V+ +++ GL K DPYVR+ T DP G
Sbjct: 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRV--------TLYDPMNGVLTSVQTKTIKKSL 69
Query: 93 -PRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPI 133
P+WN+E+ + + E++DE T D+ + +P+
Sbjct: 70 NPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 38 ASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNK 97
A S + +GRL + V++A +K K +PY + +G Y T T P+WN
Sbjct: 378 ARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLN-PKWNF 436
Query: 98 EVFCLLPQGVTSIY-LEIYDECSFTMDELIAWAKIPI 133
+ + L ++D F+ D+ + +IP+
Sbjct: 437 NCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPV 473
>pdb|3GMV|X Chain X, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
(Blip-I) In Apo Form
pdb|3GMW|B Chain B, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
(Blip-I) In Complex With Tem-1 Beta-Lactamase
pdb|3GMW|D Chain D, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
(Blip-I) In Complex With Tem-1 Beta-Lactamase
Length = 156
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 95 WNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146
W+K L S+ L Y+ + M E WA +P S V +GE++ +W
Sbjct: 64 WSKRNEYLYKAKTPSVKLSHYNRTALGMTEAQLWAAVPKDSCVSQGESYPNW 115
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 93 PRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPI 133
P+WN+E + + + E++DE T D+ + +P+
Sbjct: 73 PKWNEEFYFRVNPSNHRLLFEVFDENRLTRDDFLGQVDVPL 113
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 36 STASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRW 95
S+ SS VG L + V++A + K DP+ L +G+ +THT P W
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHT-VYKNLNPEW 60
Query: 96 NKEVFCLLPQGVTSIY-LEIYDECSFTMDELIAWAKIPIPS 135
NK VF + + + + ++DE + + IP+ S
Sbjct: 61 NK-VFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLS 100
>pdb|2WD5|B Chain B, Smc Hinge Heterodimer (Mouse)
Length = 213
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 295 FLALIKLDILDTYLFSANKPIPLLKKFKIRTR--SLFLQIFG 334
FL L KLD+ DT N IP++ K + R F +FG
Sbjct: 104 FLPLNKLDVRDTAYPETNDAIPMISKLRYNPRFDKAFKHVFG 145
>pdb|4GGO|A Chain A, Crystal Structure Of Trans-2-Enoyl-Coa Reductase From
Treponema Denticola
pdb|4GGO|B Chain B, Crystal Structure Of Trans-2-Enoyl-Coa Reductase From
Treponema Denticola
pdb|4GGO|C Chain C, Crystal Structure Of Trans-2-Enoyl-Coa Reductase From
Treponema Denticola
pdb|4GGO|D Chain D, Crystal Structure Of Trans-2-Enoyl-Coa Reductase From
Treponema Denticola
Length = 401
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 137 VMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSXXXXXXXXENSIS----YLEITKHPL 192
VM GE E W K+G +EG I L SY + +I +LE T H L
Sbjct: 204 VMGGEDWERWIKQLSKEGLLEEGCITLAYSYIGPEATQALYRKGTIGKAKEHLEATAHRL 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,751,895
Number of Sequences: 62578
Number of extensions: 335472
Number of successful extensions: 672
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 9
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)