Query psy3181
Match_columns 349
No_of_seqs 268 out of 1526
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:24:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 99.9 2E-25 4.3E-30 188.8 16.2 121 46-167 1-121 (121)
2 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.2E-21 2.6E-26 164.1 15.7 120 48-169 1-121 (121)
3 cd08682 C2_Rab11-FIP_classI C2 99.9 1.3E-21 2.7E-26 165.3 13.7 117 49-166 1-126 (126)
4 cd04022 C2A_MCTP_PRT_plant C2 99.9 2.5E-21 5.4E-26 163.7 14.0 120 48-168 1-126 (127)
5 cd08681 C2_fungal_Inn1p-like C 99.9 2E-21 4.3E-26 161.6 12.8 117 47-167 1-118 (118)
6 cd04019 C2C_MCTP_PRT_plant C2 99.9 8.5E-21 1.9E-25 166.0 15.4 123 49-171 2-135 (150)
7 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.6E-20 3.4E-25 160.0 14.1 113 49-163 2-125 (126)
8 cd04024 C2A_Synaptotagmin-like 99.8 4E-20 8.7E-25 155.3 14.2 120 47-167 1-128 (128)
9 cd08376 C2B_MCTP_PRT C2 domain 99.8 6.8E-20 1.5E-24 151.9 15.0 114 48-168 1-115 (116)
10 cd08378 C2B_MCTP_PRT_plant C2 99.8 4.2E-20 9.1E-25 155.7 13.6 114 49-168 2-120 (121)
11 cd08678 C2_C21orf25-like C2 do 99.8 1.2E-19 2.6E-24 153.3 15.3 119 49-171 1-123 (126)
12 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 8.1E-20 1.8E-24 155.0 14.0 119 48-167 1-132 (133)
13 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.7E-19 3.6E-24 149.8 15.6 117 47-167 1-118 (119)
14 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.4E-19 3E-24 152.5 14.6 117 49-167 2-121 (121)
15 KOG1030|consensus 99.8 4.3E-20 9.3E-25 162.4 11.3 97 43-140 2-98 (168)
16 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 2.4E-19 5.2E-24 150.7 14.8 117 49-166 2-120 (121)
17 cd08375 C2_Intersectin C2 doma 99.8 3.5E-19 7.7E-24 153.2 15.8 120 43-167 11-135 (136)
18 cd04015 C2_plant_PLD C2 domain 99.8 3.4E-19 7.5E-24 157.1 16.1 122 44-168 4-158 (158)
19 cd08400 C2_Ras_p21A1 C2 domain 99.8 6.1E-19 1.3E-23 149.4 16.8 119 46-170 3-125 (126)
20 cd08677 C2A_Synaptotagmin-13 C 99.8 9.2E-20 2E-24 153.4 11.0 106 39-149 6-118 (118)
21 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 5.5E-19 1.2E-23 148.2 14.6 116 48-165 1-122 (123)
22 cd08381 C2B_PI3K_class_II C2 d 99.8 1.9E-19 4E-24 152.0 11.4 105 40-149 8-121 (122)
23 cd04044 C2A_Tricalbin-like C2 99.8 5.2E-19 1.1E-23 147.5 13.7 121 46-169 1-124 (124)
24 cd08391 C2A_C2C_Synaptotagmin_ 99.8 6.2E-19 1.3E-23 146.5 14.0 114 47-167 1-121 (121)
25 cd04036 C2_cPLA2 C2 domain pre 99.8 8.9E-19 1.9E-23 146.3 14.1 112 49-167 2-117 (119)
26 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.7E-19 5.9E-24 151.4 10.8 109 40-150 8-125 (125)
27 cd04046 C2_Calpain C2 domain p 99.8 2.6E-18 5.5E-23 145.4 16.4 120 45-169 1-123 (126)
28 cd04017 C2D_Ferlin C2 domain f 99.8 2.2E-18 4.7E-23 147.5 15.5 119 48-170 2-134 (135)
29 cd08392 C2A_SLP-3 C2 domain fi 99.8 5.6E-19 1.2E-23 150.6 11.7 110 40-150 8-128 (128)
30 cd04029 C2A_SLP-4_5 C2 domain 99.8 8.8E-19 1.9E-23 148.5 12.2 109 40-150 8-125 (125)
31 cd04051 C2_SRC2_like C2 domain 99.8 7.8E-19 1.7E-23 147.5 11.5 115 48-163 1-125 (125)
32 cd08373 C2A_Ferlin C2 domain f 99.8 3.6E-18 7.8E-23 144.2 15.3 116 53-172 2-120 (127)
33 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.6E-18 3.5E-23 145.6 12.4 109 40-150 9-123 (124)
34 cd04027 C2B_Munc13 C2 domain s 99.8 3.7E-18 7.9E-23 144.6 14.3 114 48-165 2-127 (127)
35 cd04014 C2_PKC_epsilon C2 doma 99.8 7.7E-18 1.7E-22 143.2 16.2 116 46-169 3-130 (132)
36 cd08382 C2_Smurf-like C2 domai 99.8 3.6E-18 7.7E-23 143.9 13.5 115 49-165 2-122 (123)
37 cd08395 C2C_Munc13 C2 domain t 99.8 3.5E-18 7.6E-23 144.4 13.3 102 48-152 1-113 (120)
38 cd04031 C2A_RIM1alpha C2 domai 99.8 1.8E-18 4E-23 144.8 11.3 108 40-150 9-125 (125)
39 cd08385 C2A_Synaptotagmin-1-5- 99.8 3.4E-18 7.4E-23 143.4 12.7 109 40-150 9-123 (124)
40 cd08394 C2A_Munc13 C2 domain f 99.8 6.1E-18 1.3E-22 144.0 13.0 99 47-151 2-101 (127)
41 cd04050 C2B_Synaptotagmin-like 99.8 4.9E-18 1.1E-22 139.0 12.0 100 49-152 2-103 (105)
42 cd08680 C2_Kibra C2 domain fou 99.8 3.1E-18 6.7E-23 145.4 11.1 110 39-149 6-124 (124)
43 cd04030 C2C_KIAA1228 C2 domain 99.8 4E-18 8.6E-23 143.3 11.6 109 40-150 9-127 (127)
44 cd04043 C2_Munc13_fungal C2 do 99.8 1.9E-17 4.1E-22 139.2 15.5 115 48-169 2-122 (126)
45 cd04028 C2B_RIM1alpha C2 domai 99.8 7.1E-18 1.5E-22 147.1 13.3 106 45-152 27-139 (146)
46 cd04010 C2B_RasA3 C2 domain se 99.8 5.1E-18 1.1E-22 148.3 12.3 102 48-152 1-123 (148)
47 cd08688 C2_KIAA0528-like C2 do 99.8 6.1E-18 1.3E-22 139.7 11.5 101 49-150 1-108 (110)
48 cd04049 C2_putative_Elicitor-r 99.8 8.8E-18 1.9E-22 141.1 12.7 105 47-152 1-109 (124)
49 PLN03008 Phospholipase D delta 99.8 1.4E-17 3.1E-22 176.2 17.1 133 38-173 5-182 (868)
50 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.2E-17 2.6E-22 140.2 12.7 109 40-150 9-124 (125)
51 cd04041 C2A_fungal C2 domain f 99.7 8.1E-18 1.8E-22 139.2 10.8 99 47-150 1-107 (111)
52 cd08521 C2A_SLP C2 domain firs 99.7 1.3E-17 2.9E-22 139.2 12.2 108 40-149 7-123 (123)
53 cd08389 C2A_Synaptotagmin-14_1 99.7 1.2E-17 2.7E-22 141.1 11.4 109 40-151 9-124 (124)
54 cd08685 C2_RGS-like C2 domain 99.7 1.3E-17 2.8E-22 140.3 11.0 102 45-149 10-119 (119)
55 cd08390 C2A_Synaptotagmin-15-1 99.7 3.5E-17 7.7E-22 136.8 12.8 110 39-150 6-122 (123)
56 cd04039 C2_PSD C2 domain prese 99.7 2.9E-17 6.3E-22 136.0 11.7 91 47-138 1-97 (108)
57 KOG1028|consensus 99.7 4.6E-17 9.9E-22 164.2 15.4 160 40-211 160-327 (421)
58 cd08388 C2A_Synaptotagmin-4-11 99.7 4E-17 8.6E-22 138.9 12.7 110 40-150 9-127 (128)
59 cd04045 C2C_Tricalbin-like C2 99.7 6.3E-17 1.4E-21 136.1 12.8 103 47-152 1-104 (120)
60 cd08383 C2A_RasGAP C2 domain ( 99.7 1.2E-16 2.6E-21 132.1 14.2 111 49-167 2-117 (117)
61 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 5.4E-17 1.2E-21 143.7 12.1 107 43-151 23-138 (162)
62 cd04018 C2C_Ferlin C2 domain t 99.7 6.9E-17 1.5E-21 141.7 11.9 104 48-152 1-126 (151)
63 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.7E-17 5.9E-22 139.7 8.5 110 39-152 5-122 (133)
64 cd04011 C2B_Ferlin C2 domain s 99.7 1.7E-16 3.6E-21 131.1 12.4 101 46-151 3-110 (111)
65 cd04052 C2B_Tricalbin-like C2 99.7 1.7E-16 3.7E-21 131.4 11.8 102 63-170 8-111 (111)
66 cd04038 C2_ArfGAP C2 domain pr 99.7 1.8E-16 3.9E-21 138.1 12.1 91 46-138 1-91 (145)
67 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.6E-16 3.4E-21 135.8 11.4 108 40-151 8-123 (136)
68 cd04040 C2D_Tricalbin-like C2 99.7 4.3E-16 9.3E-21 128.7 13.2 112 49-163 1-114 (115)
69 cd08404 C2B_Synaptotagmin-4 C2 99.7 6.6E-17 1.4E-21 138.3 8.3 108 40-151 8-123 (136)
70 cd08405 C2B_Synaptotagmin-7 C2 99.7 5.1E-17 1.1E-21 138.8 7.4 110 39-152 7-124 (136)
71 cd08406 C2B_Synaptotagmin-12 C 99.7 5.1E-17 1.1E-21 140.1 7.3 109 39-151 7-123 (136)
72 cd08692 C2B_Tac2-N C2 domain s 99.7 3.9E-16 8.4E-21 134.4 11.9 110 39-150 6-122 (135)
73 cd04032 C2_Perforin C2 domain 99.7 3.3E-16 7.1E-21 133.6 11.2 91 43-135 24-116 (127)
74 cd08407 C2B_Synaptotagmin-13 C 99.7 1.3E-16 2.8E-21 137.9 8.7 108 39-150 7-124 (138)
75 cd04013 C2_SynGAP_like C2 doma 99.7 1.8E-15 3.9E-20 132.0 15.5 120 45-171 9-142 (146)
76 cd08691 C2_NEDL1-like C2 domai 99.7 1.6E-15 3.4E-20 131.0 15.0 115 48-165 2-136 (137)
77 cd08675 C2B_RasGAP C2 domain s 99.7 4.6E-16 9.9E-21 134.0 11.5 101 49-152 1-121 (137)
78 cd08690 C2_Freud-1 C2 domain f 99.7 1.7E-15 3.6E-20 133.5 15.2 119 47-168 4-137 (155)
79 cd08676 C2A_Munc13-like C2 dom 99.7 5.2E-16 1.1E-20 136.5 11.6 100 43-149 24-153 (153)
80 cd00275 C2_PLC_like C2 domain 99.7 2.5E-15 5.5E-20 125.9 15.2 115 48-167 3-127 (128)
81 cd08403 C2B_Synaptotagmin-3-5- 99.7 1.8E-16 3.8E-21 135.2 8.0 109 40-152 7-123 (134)
82 cd04021 C2_E3_ubiquitin_ligase 99.7 1.7E-15 3.7E-20 128.2 13.8 116 47-165 2-124 (125)
83 cd08410 C2B_Synaptotagmin-17 C 99.7 2.5E-16 5.3E-21 135.0 8.2 110 40-152 7-124 (135)
84 cd04009 C2B_Munc13-like C2 dom 99.7 5.5E-16 1.2E-20 132.3 10.3 97 40-137 9-117 (133)
85 cd04037 C2E_Ferlin C2 domain f 99.7 7.3E-16 1.6E-20 130.2 11.0 117 48-169 1-120 (124)
86 cd00276 C2B_Synaptotagmin C2 d 99.7 2.2E-16 4.8E-21 133.3 7.7 109 40-152 7-123 (134)
87 cd08408 C2B_Synaptotagmin-14_1 99.7 2.1E-16 4.6E-21 136.4 7.7 109 39-150 7-124 (138)
88 cd04026 C2_PKC_alpha_gamma C2 99.6 1.3E-15 2.9E-20 129.0 11.7 103 47-152 13-122 (131)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.6 1.7E-15 3.6E-20 127.1 12.1 106 40-148 8-122 (123)
90 cd08409 C2B_Synaptotagmin-15 C 99.6 4.6E-16 9.9E-21 133.8 7.8 110 39-151 7-124 (137)
91 KOG0696|consensus 99.6 2.2E-16 4.9E-21 155.6 3.3 105 44-151 177-288 (683)
92 PLN03200 cellulose synthase-in 99.6 4.2E-15 9.1E-20 169.7 11.0 123 40-169 1973-2101(2102)
93 cd04048 C2A_Copine C2 domain f 99.6 2E-14 4.2E-19 120.3 11.8 96 53-150 6-113 (120)
94 cd08686 C2_ABR C2 domain in th 99.5 1E-13 2.3E-18 116.6 13.3 80 49-135 1-92 (118)
95 cd04047 C2B_Copine C2 domain s 99.5 2.2E-13 4.7E-18 111.9 10.5 85 51-137 4-99 (110)
96 PF00168 C2: C2 domain; Inter 99.5 2.5E-13 5.3E-18 104.3 8.9 81 49-130 1-85 (85)
97 PLN02270 phospholipase D alpha 99.4 3.6E-12 7.8E-17 135.4 17.2 127 44-172 5-152 (808)
98 KOG1011|consensus 99.4 8.6E-13 1.9E-17 135.0 8.6 122 43-168 291-424 (1283)
99 cd00030 C2 C2 domain. The C2 d 99.4 5.3E-12 1.2E-16 97.7 11.0 100 49-149 1-102 (102)
100 KOG2059|consensus 99.4 1.3E-12 2.7E-17 135.1 9.3 123 47-172 5-129 (800)
101 smart00239 C2 Protein kinase C 99.3 2.1E-11 4.6E-16 95.2 10.9 88 48-136 1-92 (101)
102 KOG1028|consensus 99.2 2.2E-11 4.8E-16 123.1 9.2 108 38-149 289-404 (421)
103 PLN02223 phosphoinositide phos 99.2 2.3E-10 4.9E-15 117.5 15.5 117 46-167 408-536 (537)
104 cd08374 C2F_Ferlin C2 domain s 99.2 8.3E-11 1.8E-15 101.2 9.6 90 49-140 2-124 (133)
105 COG5038 Ca2+-dependent lipid-b 99.2 9.7E-11 2.1E-15 126.9 11.5 136 25-170 421-559 (1227)
106 PLN02952 phosphoinositide phos 99.1 1E-09 2.2E-14 114.7 15.9 104 46-154 469-584 (599)
107 COG5038 Ca2+-dependent lipid-b 99.1 1.5E-10 3.2E-15 125.5 9.7 124 43-168 1036-1161(1227)
108 PLN02230 phosphoinositide phos 99.1 1.6E-09 3.5E-14 113.0 14.7 118 45-167 467-597 (598)
109 PLN02222 phosphoinositide phos 99.1 3.6E-09 7.9E-14 110.2 16.0 118 45-167 450-580 (581)
110 KOG1328|consensus 99.1 7.2E-11 1.6E-15 122.5 3.2 156 13-171 74-304 (1103)
111 PLN02228 Phosphoinositide phos 99.1 3.3E-09 7.2E-14 110.2 15.3 120 46-170 430-563 (567)
112 KOG0169|consensus 99.0 1.5E-09 3.3E-14 113.8 12.4 117 48-168 617-744 (746)
113 PLN02352 phospholipase D epsil 99.0 6.7E-09 1.4E-13 110.5 13.3 140 43-193 6-158 (758)
114 cd08689 C2_fungal_Pkc1p C2 dom 98.9 4.8E-09 1E-13 86.5 7.9 82 49-136 1-86 (109)
115 KOG1264|consensus 98.9 1.2E-08 2.6E-13 107.3 11.6 122 46-172 1064-1193(1267)
116 KOG1031|consensus 98.9 8.2E-09 1.8E-13 105.4 9.1 120 46-167 2-135 (1169)
117 KOG1328|consensus 98.7 8.4E-09 1.8E-13 107.4 3.1 96 40-136 940-1047(1103)
118 KOG2059|consensus 98.6 3.2E-08 6.9E-13 103.0 5.1 116 51-169 135-277 (800)
119 KOG1326|consensus 98.5 2.1E-08 4.7E-13 107.4 1.6 169 45-277 204-382 (1105)
120 KOG1013|consensus 98.1 2.6E-06 5.6E-11 82.5 5.2 107 38-148 224-338 (362)
121 KOG1013|consensus 98.0 1.3E-06 2.7E-11 84.6 0.5 167 40-217 86-268 (362)
122 KOG0905|consensus 98.0 4.8E-06 1E-10 91.0 4.9 105 45-151 1522-1635(1639)
123 KOG1326|consensus 98.0 5.1E-06 1.1E-10 89.6 4.0 93 44-137 610-705 (1105)
124 cd04016 C2_Tollip C2 domain pr 97.8 2.7E-05 5.8E-10 65.9 4.1 63 253-316 2-81 (121)
125 PLN02964 phosphatidylserine de 97.5 0.00017 3.6E-09 76.7 6.6 88 40-135 47-136 (644)
126 cd08683 C2_C2cd3 C2 domain fou 97.5 0.00029 6.3E-09 60.4 6.2 100 49-149 1-143 (143)
127 KOG1011|consensus 97.4 0.00045 9.7E-09 72.2 8.2 107 43-152 1121-1238(1283)
128 KOG2060|consensus 97.3 0.00017 3.8E-09 71.1 3.2 109 43-152 265-380 (405)
129 KOG1265|consensus 96.8 0.0032 6.9E-08 68.0 7.4 99 42-152 698-806 (1189)
130 KOG1327|consensus 96.6 0.004 8.7E-08 64.4 6.5 81 54-136 143-234 (529)
131 PF12416 DUF3668: Cep120 prote 96.5 0.031 6.8E-07 55.4 12.1 118 49-170 2-134 (340)
132 cd08684 C2A_Tac2-N C2 domain f 96.5 0.003 6.5E-08 50.9 3.7 94 50-148 2-102 (103)
133 PF15627 CEP76-C2: CEP76 C2 do 96.2 0.066 1.4E-06 47.4 10.9 128 43-171 5-153 (156)
134 cd08375 C2_Intersectin C2 doma 96.2 0.0081 1.8E-07 51.5 4.9 65 250-315 12-94 (136)
135 KOG3837|consensus 96.1 0.005 1.1E-07 61.8 3.8 122 44-168 364-503 (523)
136 PF10358 NT-C2: N-terminal C2 96.1 0.3 6.5E-06 41.5 14.4 122 45-172 5-139 (143)
137 cd04032 C2_Perforin C2 domain 95.4 0.02 4.3E-07 48.8 4.3 67 249-316 24-108 (127)
138 cd08398 C2_PI3K_class_I_alpha 95.1 0.17 3.6E-06 44.9 9.2 85 46-135 7-105 (158)
139 cd04038 C2_ArfGAP C2 domain pr 95.1 0.031 6.6E-07 48.7 4.5 62 253-315 2-79 (145)
140 cd08693 C2_PI3K_class_I_beta_d 94.8 0.17 3.8E-06 45.4 8.7 85 47-134 8-118 (173)
141 cd04045 C2C_Tricalbin-like C2 94.7 0.05 1.1E-06 45.5 4.7 62 253-315 1-80 (120)
142 cd08687 C2_PKN-like C2 domain 94.7 0.38 8.1E-06 39.1 9.3 83 68-167 9-92 (98)
143 cd04039 C2_PSD C2 domain prese 94.6 0.055 1.2E-06 44.5 4.7 63 253-316 1-86 (108)
144 cd04049 C2_putative_Elicitor-r 94.5 0.052 1.1E-06 45.1 4.3 62 253-315 1-84 (124)
145 cd04021 C2_E3_ubiquitin_ligase 94.4 0.057 1.2E-06 45.4 4.2 63 253-316 2-80 (125)
146 cd08380 C2_PI3K_like C2 domain 94.2 0.3 6.6E-06 42.6 8.6 87 47-135 8-106 (156)
147 cd08377 C2C_MCTP_PRT C2 domain 93.8 0.098 2.1E-06 42.8 4.5 62 253-315 1-79 (119)
148 cd04012 C2A_PI3K_class_II C2 d 93.7 0.3 6.5E-06 43.6 7.8 91 45-135 6-118 (171)
149 cd08681 C2_fungal_Inn1p-like C 93.5 0.098 2.1E-06 42.9 4.1 61 253-315 1-80 (118)
150 cd04044 C2A_Tricalbin-like C2 93.5 0.083 1.8E-06 43.4 3.6 62 253-315 2-83 (124)
151 KOG1452|consensus 93.4 0.15 3.4E-06 49.8 5.6 120 41-168 45-167 (442)
152 cd08397 C2_PI3K_class_III C2 d 93.4 0.29 6.2E-06 43.4 7.0 85 66-167 28-122 (159)
153 cd04025 C2B_RasA1_RasA4 C2 dom 93.1 0.13 2.9E-06 42.5 4.3 61 254-315 1-79 (123)
154 cd08682 C2_Rab11-FIP_classI C2 92.3 0.15 3.2E-06 42.6 3.5 71 255-329 1-94 (126)
155 cd04051 C2_SRC2_like C2 domain 92.1 0.22 4.8E-06 41.2 4.4 61 254-315 1-85 (125)
156 cd04024 C2A_Synaptotagmin-like 91.6 0.33 7.2E-06 40.1 4.8 62 253-315 1-82 (128)
157 cd04014 C2_PKC_epsilon C2 doma 91.1 0.34 7.4E-06 40.7 4.5 63 252-315 3-92 (132)
158 cd08394 C2A_Munc13 C2 domain f 90.6 0.4 8.6E-06 41.1 4.4 61 253-315 2-75 (127)
159 cd04042 C2A_MCTP_PRT C2 domain 90.6 0.39 8.4E-06 39.7 4.3 61 254-315 1-79 (121)
160 cd08400 C2_Ras_p21A1 C2 domain 90.2 0.48 1E-05 39.7 4.6 63 253-316 4-81 (126)
161 KOG1329|consensus 90.0 0.79 1.7E-05 50.3 7.1 104 68-172 138-244 (887)
162 cd08399 C2_PI3K_class_I_gamma 89.5 2.9 6.4E-05 37.8 9.3 69 48-118 11-88 (178)
163 cd08379 C2D_MCTP_PRT_plant C2 89.2 0.47 1E-05 40.3 3.8 56 254-310 1-76 (126)
164 PF00792 PI3K_C2: Phosphoinosi 88.6 2.2 4.8E-05 36.6 7.6 54 82-135 23-84 (142)
165 PF00168 C2: C2 domain; Inter 88.5 0.4 8.6E-06 35.8 2.6 60 255-315 1-81 (85)
166 cd04031 C2A_RIM1alpha C2 domai 88.4 0.79 1.7E-05 37.7 4.6 64 251-315 14-103 (125)
167 PF15625 CC2D2AN-C2: CC2D2A N- 88.1 10 0.00022 33.7 11.8 82 69-151 38-124 (168)
168 cd08382 C2_Smurf-like C2 domai 87.7 0.73 1.6E-05 38.3 4.0 57 255-312 2-75 (123)
169 cd08391 C2A_C2C_Synaptotagmin_ 87.6 0.89 1.9E-05 37.0 4.4 71 253-328 1-95 (121)
170 cd04017 C2D_Ferlin C2 domain f 87.3 0.97 2.1E-05 38.2 4.6 64 254-318 2-92 (135)
171 KOG1327|consensus 87.3 1.5 3.2E-05 45.9 6.7 79 60-139 3-105 (529)
172 cd04041 C2A_fungal C2 domain f 87.2 1.1 2.4E-05 36.5 4.7 62 253-315 1-87 (111)
173 cd04046 C2_Calpain C2 domain p 86.3 1.2 2.6E-05 37.2 4.5 61 252-314 2-79 (126)
174 cd04050 C2B_Synaptotagmin-like 86.2 1.1 2.4E-05 36.0 4.1 83 255-348 2-102 (105)
175 cd08376 C2B_MCTP_PRT C2 domain 85.8 1.1 2.4E-05 36.5 4.0 61 254-315 1-79 (116)
176 cd04015 C2_plant_PLD C2 domain 85.3 1.1 2.4E-05 39.3 4.0 60 251-311 5-112 (158)
177 PF11618 DUF3250: Protein of u 83.4 7.1 0.00015 32.4 7.8 93 71-167 2-104 (107)
178 cd08695 C2_Dock-B C2 domains f 83.0 18 0.00039 33.1 10.9 37 80-117 54-93 (189)
179 cd08387 C2A_Synaptotagmin-8 C2 82.9 2.6 5.6E-05 34.8 5.1 63 251-314 14-99 (124)
180 cd08688 C2_KIAA0528-like C2 do 82.7 1.8 3.9E-05 35.2 3.9 86 255-347 1-108 (110)
181 cd04054 C2A_Rasal1_RasA4 C2 do 81.9 2.3 5E-05 35.2 4.4 60 255-315 2-79 (121)
182 PF14429 DOCK-C2: C2 domain in 81.9 5.3 0.00011 35.8 7.0 54 80-134 60-119 (184)
183 cd04033 C2_NEDD4_NEDD4L C2 dom 81.8 1.8 4E-05 36.0 3.8 61 254-315 1-85 (133)
184 cd08677 C2A_Synaptotagmin-13 C 81.8 2.6 5.6E-05 35.6 4.7 65 251-316 12-97 (118)
185 cd04036 C2_cPLA2 C2 domain pre 81.8 2.1 4.6E-05 35.1 4.1 59 255-315 2-81 (119)
186 cd00276 C2B_Synaptotagmin C2 d 81.7 2.5 5.3E-05 35.0 4.5 64 251-315 12-100 (134)
187 cd08402 C2B_Synaptotagmin-1 C2 81.7 2.7 5.9E-05 35.4 4.8 64 251-315 13-101 (136)
188 cd08384 C2B_Rabphilin_Doc2 C2 81.5 2.1 4.6E-05 35.7 4.1 64 251-315 11-99 (133)
189 cd04011 C2B_Ferlin C2 domain s 80.5 2.9 6.2E-05 33.9 4.4 62 253-315 4-83 (111)
190 cd08410 C2B_Synaptotagmin-17 C 80.5 2.7 5.8E-05 35.6 4.4 65 251-316 12-101 (135)
191 cd08405 C2B_Synaptotagmin-7 C2 80.4 4.1 9E-05 34.2 5.5 64 251-315 13-101 (136)
192 smart00142 PI3K_C2 Phosphoinos 80.0 11 0.00024 30.4 7.7 69 49-118 13-91 (100)
193 cd04020 C2B_SLP_1-2-3-4 C2 dom 79.4 3.3 7.2E-05 36.5 4.8 64 251-315 25-114 (162)
194 cd04026 C2_PKC_alpha_gamma C2 78.4 3.7 8E-05 34.2 4.6 65 250-315 10-98 (131)
195 cd04030 C2C_KIAA1228 C2 domain 78.1 3.8 8.2E-05 33.7 4.5 58 251-309 14-96 (127)
196 cd04022 C2A_MCTP_PRT_plant C2 77.5 3.8 8.3E-05 34.0 4.4 56 254-310 1-77 (127)
197 cd04019 C2C_MCTP_PRT_plant C2 76.4 4.2 9E-05 35.4 4.4 60 255-315 2-80 (150)
198 cd08403 C2B_Synaptotagmin-3-5- 76.4 4.8 0.0001 33.7 4.7 64 251-315 12-100 (134)
199 cd08385 C2A_Synaptotagmin-1-5- 75.9 4.7 0.0001 33.2 4.4 63 251-314 14-99 (124)
200 cd08521 C2A_SLP C2 domain firs 75.7 5.4 0.00012 32.5 4.8 64 251-315 12-101 (123)
201 PLN03200 cellulose synthase-in 73.8 2.9 6.4E-05 50.4 3.6 62 249-312 1976-2056(2102)
202 cd04027 C2B_Munc13 C2 domain s 73.6 4.2 9.1E-05 33.9 3.6 54 254-308 2-72 (127)
203 cd08679 C2_DOCK180_related C2 73.6 13 0.00029 33.1 7.1 53 80-134 54-114 (178)
204 KOG1030|consensus 73.5 6 0.00013 35.5 4.7 65 250-315 3-84 (168)
205 cd08678 C2_C21orf25-like C2 do 73.4 4.7 0.0001 33.4 3.9 60 255-315 1-77 (126)
206 cd08694 C2_Dock-A C2 domains f 73.2 20 0.00043 33.1 8.1 38 79-117 53-93 (196)
207 cd08386 C2A_Synaptotagmin-7 C2 73.0 5.9 0.00013 32.5 4.3 64 251-315 14-101 (125)
208 cd08395 C2C_Munc13 C2 domain t 72.7 4.9 0.00011 33.8 3.8 61 254-315 1-88 (120)
209 cd04043 C2_Munc13_fungal C2 do 72.5 6.8 0.00015 32.2 4.6 60 254-314 2-82 (126)
210 cd04040 C2D_Tricalbin-like C2 72.5 5.7 0.00012 32.0 4.1 60 255-315 1-79 (115)
211 cd08407 C2B_Synaptotagmin-13 C 72.2 6.3 0.00014 34.0 4.5 64 251-315 13-103 (138)
212 cd08676 C2A_Munc13-like C2 dom 72.2 4.9 0.00011 35.3 3.8 56 251-307 26-128 (153)
213 KOG0694|consensus 70.7 1.2 2.7E-05 47.7 -0.4 56 67-124 27-83 (694)
214 cd04018 C2C_Ferlin C2 domain t 70.1 6.2 0.00014 34.5 4.0 45 271-316 37-95 (151)
215 cd08388 C2A_Synaptotagmin-4-11 69.9 8.1 0.00017 32.4 4.6 64 251-315 14-102 (128)
216 cd00275 C2_PLC_like C2 domain 68.4 8.9 0.00019 31.3 4.5 59 254-314 3-88 (128)
217 PTZ00447 apical membrane antig 68.3 54 0.0012 33.0 10.3 119 40-166 51-171 (508)
218 cd04029 C2A_SLP-4_5 C2 domain 68.1 9.4 0.0002 31.9 4.6 64 251-315 13-102 (125)
219 cd04035 C2A_Rabphilin_Doc2 C2 68.0 11 0.00023 31.0 4.9 62 251-314 13-100 (123)
220 cd08381 C2B_PI3K_class_II C2 d 67.8 9.4 0.0002 31.7 4.5 64 251-315 11-99 (122)
221 cd08686 C2_ABR C2 domain in th 65.7 6.9 0.00015 33.1 3.2 60 255-315 1-83 (118)
222 cd04009 C2B_Munc13-like C2 dom 65.0 11 0.00023 31.7 4.4 62 251-313 14-104 (133)
223 cd08404 C2B_Synaptotagmin-4 C2 64.3 14 0.00031 31.0 5.0 64 251-315 13-101 (136)
224 cd04037 C2E_Ferlin C2 domain f 64.1 10 0.00022 31.5 4.0 60 255-315 2-81 (124)
225 cd08689 C2_fungal_Pkc1p C2 dom 62.0 12 0.00026 31.3 3.9 76 255-334 1-96 (109)
226 cd08390 C2A_Synaptotagmin-15-1 59.9 16 0.00036 29.7 4.5 63 251-314 12-98 (123)
227 cd08393 C2A_SLP-1_2 C2 domain 59.0 16 0.00034 30.4 4.3 64 251-315 13-102 (125)
228 PF06219 DUF1005: Protein of u 58.4 1.1E+02 0.0024 31.5 10.7 106 67-172 35-171 (460)
229 cd08378 C2B_MCTP_PRT_plant C2 57.4 15 0.00032 30.5 3.8 57 255-313 2-72 (121)
230 cd05137 RasGAP_CLA2_BUD2 CLA2/ 56.6 16 0.00034 37.2 4.6 43 125-168 1-44 (395)
231 PF07162 B9-C2: Ciliary basal 56.2 1.2E+02 0.0027 26.7 9.8 79 50-134 5-102 (168)
232 cd08696 C2_Dock-C C2 domains f 56.1 47 0.001 30.1 7.1 39 79-118 54-95 (179)
233 cd08697 C2_Dock-D C2 domains f 52.5 65 0.0014 29.4 7.4 39 79-118 56-97 (185)
234 cd08401 C2A_RasA2_RasA3 C2 dom 52.4 21 0.00046 29.5 4.0 61 255-316 2-81 (121)
235 cd08406 C2B_Synaptotagmin-12 C 50.9 26 0.00057 29.8 4.4 64 251-315 13-101 (136)
236 cd04010 C2B_RasA3 C2 domain se 49.5 21 0.00045 31.1 3.6 60 254-314 1-96 (148)
237 cd04052 C2B_Tricalbin-like C2 46.9 16 0.00035 29.6 2.4 31 283-315 37-71 (111)
238 cd08685 C2_RGS-like C2 domain 46.7 32 0.0007 28.4 4.2 61 250-311 9-92 (119)
239 PF14924 DUF4497: Protein of u 43.0 85 0.0018 25.8 6.2 61 107-168 28-104 (112)
240 cd04048 C2A_Copine C2 domain f 42.4 27 0.00059 28.5 3.1 31 283-314 51-89 (120)
241 cd08675 C2B_RasGAP C2 domain s 40.9 29 0.00062 29.5 3.1 60 255-315 1-96 (137)
242 cd08408 C2B_Synaptotagmin-14_1 40.2 44 0.00096 28.4 4.2 65 251-316 13-103 (138)
243 cd04028 C2B_RIM1alpha C2 domai 39.8 45 0.00097 29.0 4.2 63 250-313 26-112 (146)
244 cd04013 C2_SynGAP_like C2 doma 37.9 45 0.00097 29.1 3.9 78 251-329 9-100 (146)
245 KOG3543|consensus 35.1 2.3E+02 0.0051 30.9 9.1 112 49-167 343-458 (1218)
246 cd08392 C2A_SLP-3 C2 domain fi 34.2 65 0.0014 27.0 4.2 64 251-315 13-102 (128)
247 PF10409 PTEN_C2: C2 domain of 33.0 2.8E+02 0.0061 22.9 9.4 84 48-134 5-95 (134)
248 cd08692 C2B_Tac2-N C2 domain s 26.8 1.1E+02 0.0025 26.3 4.5 27 251-277 12-43 (135)
249 PLN02223 phosphoinositide phos 21.4 1.3E+02 0.0028 32.0 4.5 63 252-315 408-498 (537)
250 PLN02964 phosphatidylserine de 20.5 98 0.0021 33.6 3.5 67 249-318 50-130 (644)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.93 E-value=2e-25 Score=188.79 Aligned_cols=121 Identities=72% Similarity=1.209 Sum_probs=109.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181 46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL 125 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~ 125 (349)
.|+|.|+|++|++++..+ .|++||||+|.+++.+++|+++.+++.||+|||+|.|.+.+....|.|+|||+|.+++|++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER 79 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence 489999999999998888 7999999999999999999998876779999999999998766789999999999999999
Q ss_pred eEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181 126 IAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 126 LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~ 167 (349)
||.+.+++.+.+..|...+.|++|.++.+.+..|+|+|+++|
T Consensus 80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 999999997556677778999999887666788999999986
No 2
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.88 E-value=1.2e-21 Score=164.14 Aligned_cols=120 Identities=19% Similarity=0.339 Sum_probs=105.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L 126 (349)
+|+|+|++|++|+..|..|.+||||++.+++ ..++|+++++ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999999999999999987 6789999877 5699999999999877678899999999999899999
Q ss_pred EEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181 127 AWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV 169 (349)
Q Consensus 127 G~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p 169 (349)
|.+.+++.+ +..+...+.|++|.++.+.+..|+|+|.++|+|
T Consensus 80 G~~~~~l~~-l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 80 GSAFVDLST-LELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEEHHH-cCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 999999995 445555889999986655567899999999876
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.87 E-value=1.3e-21 Score=165.25 Aligned_cols=117 Identities=25% Similarity=0.449 Sum_probs=101.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc------CCeEEEEEEeecCCCCC
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ------GVTSIYLEIYDECSFTM 122 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~------~~~~L~I~V~D~d~~sk 122 (349)
++|+|++|+||+.++..|.+||||+|.+++.+++|++++++ .||+|||+|.|.+.. ....|.|+|||++.+++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 57999999999999999999999999999999999998875 599999999999876 36789999999999999
Q ss_pred CceeEEEEEeCCcccc-CCcceeeEEEccCCCC--CCcceEEEEEEE
Q psy3181 123 DELIAWAKIPIPSSVM-KGETHEDWFPLSGKQG--EDKEGMINLVLS 166 (349)
Q Consensus 123 dd~LG~v~I~L~e~l~-~g~~~~~W~~L~~k~g--~~~~GeI~L~L~ 166 (349)
|++||++.|+|+++.. .+.....||+|.++.+ .+..|+|+|+++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 9999999999997552 4555789999986433 346799999863
No 4
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=2.5e-21 Score=163.66 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=104.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC----CeEEEEEEeecCCCC-C
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIYLEIYDECSFT-M 122 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~I~V~D~d~~s-k 122 (349)
+|+|+|++|++|+..+..|.+||||++.+++...+|+++++ +.||.|||+|.|.+... ...|.|+|||++.++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence 48999999999999999899999999999999999999876 56999999999998753 367999999999886 7
Q ss_pred CceeEEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEEE
Q psy3181 123 DELIAWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSYT 168 (349)
Q Consensus 123 dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~~ 168 (349)
+++||++.++++++...+.....||+|..+. ..+.+|+|+|+++++
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999997665667788999998542 245789999999986
No 5
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.87 E-value=2e-21 Score=161.57 Aligned_cols=117 Identities=26% Similarity=0.522 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCce
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDEL 125 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~ 125 (349)
|.|.|+|++|++|+..+..|.+||||+|.+++...+|+++.+++.||.|||.|.|.+... ...|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 789999999999999999999999999999999999998876667999999999999764 578999999999876 999
Q ss_pred eEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181 126 IAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 126 LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~ 167 (349)
||++.+++.+++. +.....|++|..+ + +..|+|+|+++|
T Consensus 80 iG~~~~~l~~~~~-~~~~~~w~~L~~~-~-~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALK-EGEFDDWYELTLK-G-RYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhh-cCCCCCcEEeccC-C-cEeeEEEEEEEC
Confidence 9999999997554 4447899999854 2 478999999986
No 6
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=8.5e-21 Score=166.04 Aligned_cols=123 Identities=21% Similarity=0.337 Sum_probs=105.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCceeE
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELIA 127 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~LG 127 (349)
|.|+|++|++|++++.+|.+||||++.++++..+|++..+++.||+|||+|.|.+.+. ...|.|+|||++..++|++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 8999999999999999999999999999999999999877567999999999998754 468999999999888899999
Q ss_pred EEEEeCCcccc---CCcceeeEEEccCCCC-------CCcceEEEEEEEEEEcc
Q psy3181 128 WAKIPIPSSVM---KGETHEDWFPLSGKQG-------EDKEGMINLVLSYTVSF 171 (349)
Q Consensus 128 ~v~I~L~e~l~---~g~~~~~W~~L~~k~g-------~~~~GeI~L~L~~~p~~ 171 (349)
++.++|+++.. .+...++||+|....+ .+..|+|+|.++|.+..
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 99999996543 2345689999986532 35679999999998543
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=1.6e-20 Score=159.99 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=98.7
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCC----
Q psy3181 49 LNITVVQAKL---VKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFT---- 121 (349)
Q Consensus 49 L~V~Iv~Arn---L~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~s---- 121 (349)
|.|+|++|+| |+.+|..|++||||+|++++++.+|+++++ +.||+|||+|.|.+.+....|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccC-CCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 8999999999 899999999999999999999999999987 56999999999999877779999999999873
Q ss_pred --CCceeEEEEEeCCccccCCcceeeEEEccCCC--CCCcceEEEE
Q psy3181 122 --MDELIAWAKIPIPSSVMKGETHEDWFPLSGKQ--GEDKEGMINL 163 (349)
Q Consensus 122 --kdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~--g~~~~GeI~L 163 (349)
+|++||++.++|.. +..+...+.||+|...+ +.+..|+|++
T Consensus 81 ~~~dd~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLST-LEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHH-ccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 79999999999995 55666688999997532 3456788875
No 8
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.84 E-value=4e-20 Score=155.28 Aligned_cols=120 Identities=25% Similarity=0.350 Sum_probs=103.5
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCC
Q psy3181 47 GRLNITVVQAKLVKNYGL--VTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMD 123 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~--~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skd 123 (349)
|.|.|+|++|++|+..+. .+.+||||++.++...++|+++++ +.||.|||+|.|.+.. ....|.|+|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPN-TLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecC-CcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 789999999999999988 899999999999999999999887 5599999999999976 468999999999999889
Q ss_pred ceeEEEEEeCCcccc--CCcceeeEEEccCCCC---CCcceEEEEEEEE
Q psy3181 124 ELIAWAKIPIPSSVM--KGETHEDWFPLSGKQG---EDKEGMINLVLSY 167 (349)
Q Consensus 124 d~LG~v~I~L~e~l~--~g~~~~~W~~L~~k~g---~~~~GeI~L~L~~ 167 (349)
++||.+.+++.+... .....+.||+|.++.. ....|+|+|+++|
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999997653 2234679999986522 3468999999875
No 9
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=6.8e-20 Score=151.88 Aligned_cols=114 Identities=24% Similarity=0.350 Sum_probs=101.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCcee
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~L 126 (349)
.|+|+|++|++|+..+.+|.+||||++.+++...+|+++++ +.||.|||+|.|.+... ...|.|+|||++.+++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccC-CCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence 37899999999999999999999999999999999999877 56999999999998765 68899999999999999999
Q ss_pred EEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181 127 AWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168 (349)
Q Consensus 127 G~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~ 168 (349)
|.+.++|++ +..+...+.|++|.+. .|+|++.+.|+
T Consensus 80 G~~~~~l~~-l~~~~~~~~w~~L~~~-----~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSA-LPREQTHSLELELEDG-----EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHH-CCCCCceEEEEEccCC-----CcEEEEEEEec
Confidence 999999996 4455668899999743 49999998875
No 10
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=4.2e-20 Score=155.71 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=98.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCCceeE
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMDELIA 127 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skdd~LG 127 (349)
|.|+|++|+||+.+ .+||||++.+++...+|+++++ +.||+|||+|.|.+.. ....|.|+|||++.. ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 89999999999888 6899999999999999999877 4599999999999876 468899999999977 689999
Q ss_pred EEEEeCCccccC----CcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181 128 WAKIPIPSSVMK----GETHEDWFPLSGKQGEDKEGMINLVLSYT 168 (349)
Q Consensus 128 ~v~I~L~e~l~~----g~~~~~W~~L~~k~g~~~~GeI~L~L~~~ 168 (349)
++.++++++... +...+.||+|....+.+..|+|+|.++|-
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 999999976542 23456999998765567889999999983
No 11
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.83 E-value=1.2e-19 Score=153.33 Aligned_cols=119 Identities=19% Similarity=0.390 Sum_probs=101.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH--CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L 126 (349)
|.|+|++|+||+. ..|.+||||++.++. ..++|++++++ .||+|||.|.|.+......|.|+|||++..++|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNT-SNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecC-CCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceE
Confidence 6899999999988 678999999999973 57899998874 599999999999976678899999999999999999
Q ss_pred EEEEEeCCccccCCcceeeEEEccCCC--CCCcceEEEEEEEEEEcc
Q psy3181 127 AWAKIPIPSSVMKGETHEDWFPLSGKQ--GEDKEGMINLVLSYTVSF 171 (349)
Q Consensus 127 G~v~I~L~e~l~~g~~~~~W~~L~~k~--g~~~~GeI~L~L~~~p~~ 171 (349)
|++.+++.++. .+.....|++|.++. +....|+|.+++.|.+.+
T Consensus 78 G~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 78 GLAIVPFDELR-KNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEeHHHhc-cCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 99999999644 445567899998653 245689999999997654
No 12
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.83 E-value=8.1e-20 Score=154.96 Aligned_cols=119 Identities=19% Similarity=0.342 Sum_probs=101.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-------VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF 120 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-------~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~ 120 (349)
.|+|+|++|++|+..+..|.+||||++.+++. ..+|+++++ +.||.|||+|.|.+......|.|+|||++.+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPREHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCCCEEEEEEEECCCC
Confidence 38999999999999999999999999998654 578998876 5699999999999977667899999999999
Q ss_pred CCCceeEEEEEeCCccccCCc-----ceeeEEEccCCC-CCCcceEEEEEEEE
Q psy3181 121 TMDELIAWAKIPIPSSVMKGE-----THEDWFPLSGKQ-GEDKEGMINLVLSY 167 (349)
Q Consensus 121 skdd~LG~v~I~L~e~l~~g~-----~~~~W~~L~~k~-g~~~~GeI~L~L~~ 167 (349)
+++++||++.+++.++..... ....||+|.+.. ..+..|+|+|++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 999999999999997665432 356999998542 24578999999987
No 13
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.83 E-value=1.7e-19 Score=149.85 Aligned_cols=117 Identities=25% Similarity=0.350 Sum_probs=102.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L 126 (349)
|.|.|+|++|++|+..+..+.+||||++.+++...+|+++++ +.||.|||+|.|.+......+.|+|||++..+++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecC-CcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCcee
Confidence 789999999999999999999999999999988899999887 4599999999999877678999999999988899999
Q ss_pred EEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEE
Q psy3181 127 AWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSY 167 (349)
Q Consensus 127 G~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~ 167 (349)
|++.+++.+. ..+ ...||.|..+.. .+..|+|.|++.+
T Consensus 80 G~~~~~l~~~-~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSI-KNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHC-CCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999964 334 358999975432 4578999999876
No 14
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.83 E-value=1.4e-19 Score=152.52 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=98.5
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181 49 LNITVVQAKLVKNYG-LVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L 126 (349)
|.|+|++|+||+.++ ..|.+||||+|.+++. ..+|+++++ +.||.|||+|.|.++.....|.|.|||++.+++|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence 789999999999874 4688999999999865 678999877 5699999999999987678999999999999999999
Q ss_pred EEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEE
Q psy3181 127 AWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSY 167 (349)
Q Consensus 127 G~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~ 167 (349)
|.+.++++++. .+...+.||+|.... ..+..|+|+|++.|
T Consensus 81 G~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 81 GKVAIKKEDLH-KYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEHHHcc-CCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999644 445578999998532 23457999998764
No 15
>KOG1030|consensus
Probab=99.82 E-value=4.3e-20 Score=162.40 Aligned_cols=97 Identities=25% Similarity=0.395 Sum_probs=90.2
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCC
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTM 122 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~sk 122 (349)
....|.|.|+|++|.||...|..+++||||++++++++.+|+++++ ++||+|||.|+|.+.++...|+++|||+|.+++
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~-n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYK-NLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS 80 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecC-CCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence 3567999999999999999999999999999999999999999887 459999999999999999999999999999999
Q ss_pred CceeEEEEEeCCccccCC
Q psy3181 123 DELIAWAKIPIPSSVMKG 140 (349)
Q Consensus 123 dd~LG~v~I~L~e~l~~g 140 (349)
|||||.+.|+|...+...
T Consensus 81 dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ccccceeeeccHHHHHHh
Confidence 999999999999766543
No 16
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.82 E-value=2.4e-19 Score=150.69 Aligned_cols=117 Identities=24% Similarity=0.370 Sum_probs=99.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeE
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIA 127 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG 127 (349)
|.|+|++|++|++.+..|.+||||++.+++. ..+|+++++ +.||.|||.|.|.+......|.|.|||++.+++|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEE
Confidence 8899999999999999999999999999875 469999877 56999999999999777789999999999999999999
Q ss_pred EEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEE
Q psy3181 128 WAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLS 166 (349)
Q Consensus 128 ~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~ 166 (349)
++.++++++...+...+.|++|.+.. .....|+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999986554344578999997532 2346799998764
No 17
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=3.5e-19 Score=153.23 Aligned_cols=120 Identities=18% Similarity=0.312 Sum_probs=101.4
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCC
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFT 121 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~s 121 (349)
....|.|+|+|++|++|+..|..|.+||||++.+++..++|+++++ +.||.|||+|.|.+.+. ...|.|+|||++.++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD-TLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCC-CCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence 5567999999999999999999999999999999999999999887 56999999999998764 578999999999999
Q ss_pred CCceeEEEEEeCCccccC----CcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181 122 MDELIAWAKIPIPSSVMK----GETHEDWFPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 122 kdd~LG~v~I~L~e~l~~----g~~~~~W~~L~~k~g~~~~GeI~L~L~~ 167 (349)
+|++||++.+++.+++.. ......|..|.. ...|+|+|++.|
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 999999999999976641 112335666642 356999999876
No 18
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.82 E-value=3.4e-19 Score=157.07 Aligned_cols=122 Identities=22% Similarity=0.371 Sum_probs=102.8
Q ss_pred CcceEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCeE-EEEEecCCCCCC
Q psy3181 44 NPVGRLNITVVQAKLVKNYG------------------------------LVTKMDPYVRLRVGHCV-YETHTDPSGGKF 92 (349)
Q Consensus 44 ~~~G~L~V~Iv~ArnL~~~d------------------------------~~G~sDPYV~V~lg~~~-~kTkvvk~~~~n 92 (349)
..+|+|.|+|++|++|+.+| ..|.+||||+|.+++.. .+|++++++ .|
T Consensus 4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~-~n 82 (158)
T cd04015 4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENS-EN 82 (158)
T ss_pred EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCC-CC
Confidence 46899999999999999987 34678999999999754 699998775 69
Q ss_pred CccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC--CCcceEEEEEEEEE
Q psy3181 93 PRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG--EDKEGMINLVLSYT 168 (349)
Q Consensus 93 P~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g--~~~~GeI~L~L~~~ 168 (349)
|+|||+|.|.+......|.|+|||+|.++ +++||.+.++++++. .+...+.|++|.+..+ .+..|.|+|+++|+
T Consensus 83 P~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 83 PVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLL-SGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHcc-CCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999998777788999999999886 689999999999654 5666889999975433 34568999999984
No 19
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.82 E-value=6.1e-19 Score=149.45 Aligned_cols=119 Identities=20% Similarity=0.361 Sum_probs=98.4
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCC
Q psy3181 46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMD 123 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skd 123 (349)
...|+|+|++|+||+.. +.+||||+|.+++. ..+|++ ++ +.||.|||+|.|.+.+. ...+.|.|||++..++|
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKD 77 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCC
Confidence 35699999999999875 46899999999874 467886 44 56999999999986554 36799999999999999
Q ss_pred ceeEEEEEeCCccccCCcceeeEEEccCCC--CCCcceEEEEEEEEEEc
Q psy3181 124 ELIAWAKIPIPSSVMKGETHEDWFPLSGKQ--GEDKEGMINLVLSYTVS 170 (349)
Q Consensus 124 d~LG~v~I~L~e~l~~g~~~~~W~~L~~k~--g~~~~GeI~L~L~~~p~ 170 (349)
++||.+.++|.+ +..+...+.||+|.+.. +.+..|+|+|+++|.+.
T Consensus 78 ~~iG~v~i~l~~-l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 78 SEIAEVTVQLSK-LQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CeEEEEEEEHhH-ccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 999999999995 55566688999998653 34567999999999863
No 20
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.82 E-value=9.2e-20 Score=153.44 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=89.3
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY 111 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~ 111 (349)
|+.+....|.|+|+|++|++|+ ..|.+||||++.+.. .+.+|++.++ +.||+|||+|.|.++.. ...|.
T Consensus 6 sL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l~~~tL~ 81 (118)
T cd08677 6 SLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEESLDGTLT 81 (118)
T ss_pred EEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHhCCcEEE
Confidence 4778999999999999999998 346799999999863 4778888776 56999999999999764 57899
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L 149 (349)
|+|||+|+++++++||++.+++.+ +..+...++|..|
T Consensus 82 ~~V~d~Drfs~~d~IG~v~l~l~~-~~~~~~~~~W~~~ 118 (118)
T cd08677 82 LTLRCCDRFSRHSTLGELRLKLAD-VSMMLGAAQWVDL 118 (118)
T ss_pred EEEEeCCCCCCCceEEEEEEcccc-ccCCccccchhcC
Confidence 999999999999999999999995 4334446678654
No 21
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=5.5e-19 Score=148.21 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=99.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCcee
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~L 126 (349)
+|+|+|++|++|+..+..+.+||||+|.+++...+|+++++ +.||.|||+|.|.+... ...|.|+|||++.++++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence 48999999999999999899999999999999999999887 45999999999998765 57899999999999999999
Q ss_pred EEEEEeCCccccCCcceeeEEEccCCC-----CCCcceEEEEEE
Q psy3181 127 AWAKIPIPSSVMKGETHEDWFPLSGKQ-----GEDKEGMINLVL 165 (349)
Q Consensus 127 G~v~I~L~e~l~~g~~~~~W~~L~~k~-----g~~~~GeI~L~L 165 (349)
|.+.++|.++ ..+...+.||.|.+.. ..+..|.|.|.+
T Consensus 80 G~~~~~l~~l-~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTL-QQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHc-ccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999964 4444578999997521 235679998865
No 22
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=1.9e-19 Score=151.98 Aligned_cols=105 Identities=20% Similarity=0.301 Sum_probs=89.8
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEe-cc---CCeEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLL-PQ---GVTSI 110 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V-~~---~~~~L 110 (349)
+.+. .+.|.|+|++|++|+..+ .+.+||||+|.+. ..+.+|+++++ +.||+|||+|.|.+ +. ....|
T Consensus 8 l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L 83 (122)
T cd08381 8 ISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVL 83 (122)
T ss_pred EEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEE
Confidence 4445 689999999999999999 8999999999986 34788999877 46999999999997 32 25789
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L 149 (349)
.|+|||+|.++++++||++.|+|.+ +..+...+.||+|
T Consensus 84 ~~~V~d~d~~~~~~~lG~~~i~l~~-l~~~~~~~~W~~L 121 (122)
T cd08381 84 QVSVWSHDSLVENEFLGGVCIPLKK-LDLSQETEKWYPL 121 (122)
T ss_pred EEEEEeCCCCcCCcEEEEEEEeccc-cccCCCccceEEC
Confidence 9999999999999999999999996 4445557899987
No 23
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.81 E-value=5.2e-19 Score=147.54 Aligned_cols=121 Identities=22% Similarity=0.307 Sum_probs=100.1
Q ss_pred ceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC--eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCC
Q psy3181 46 VGRLNITVVQAKLVKNYGL-VTKMDPYVRLRVGH--CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTM 122 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~sk 122 (349)
.|.|.|+|++|++|+..+. .+.+||||++.+++ ...+|+++.+ +.||.|||.|.|.+......|.|+|||++..++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNSLTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCCCCCEEEEEEEecCCCCC
Confidence 4889999999999997664 46799999999987 7899999877 569999999999998667899999999999989
Q ss_pred CceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181 123 DELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV 169 (349)
Q Consensus 123 dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p 169 (349)
|++||.+.++|.++...+.....|+.+.. ..+..|+|+++++|.|
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~--~~k~~G~i~~~l~~~p 124 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR--NGKPVGELNYDLRFFP 124 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhc--CCccceEEEEEEEeCC
Confidence 99999999999976554432234555543 2346799999999976
No 24
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=6.2e-19 Score=146.47 Aligned_cols=114 Identities=26% Similarity=0.443 Sum_probs=98.3
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCC
Q psy3181 47 GRLNITVVQAKLVKNYGL------VTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECS 119 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~------~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~ 119 (349)
|.|.|+|++|++|+..+. .|.+||||++.+++..++|+++++ +.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCC-CCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 689999999999998875 368999999999999999999877 5699999999999865 46889999999998
Q ss_pred CCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181 120 FTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 120 ~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~ 167 (349)
. ++++||.+.+++.++... ...+.||+|.+. ..|+|+++++|
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~----~~G~~~~~~~~ 121 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKK-GFIDEWLPLEDV----KSGRLHLKLEW 121 (121)
T ss_pred C-CCCcEEEEEEEHHHhccc-CccceEEECcCC----CCceEEEEEeC
Confidence 8 799999999999976544 447899999753 45999998764
No 25
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=8.9e-19 Score=146.27 Aligned_cols=112 Identities=20% Similarity=0.236 Sum_probs=96.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCc
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDE 124 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd 124 (349)
|.|+|++|++|+..+..|.+||||++.++ ....+|+++++ +.||+|||+|.|.+... ...|.|+|||+|.+ +|+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 78999999999999988999999999986 35789999887 45999999999998654 46799999999988 899
Q ss_pred eeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181 125 LIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~ 167 (349)
+||++.+++++ +..+.....|++|..+ .+|+|++++.+
T Consensus 80 ~iG~~~~~l~~-l~~g~~~~~~~~L~~~----~~g~l~~~~~~ 117 (119)
T cd04036 80 HLGTVLFDVSK-LKLGEKVRVTFSLNPQ----GKEELEVEFLL 117 (119)
T ss_pred ccEEEEEEHHH-CCCCCcEEEEEECCCC----CCceEEEEEEe
Confidence 99999999995 5667778999999754 36999998875
No 26
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.80 E-value=2.7e-19 Score=151.40 Aligned_cols=109 Identities=16% Similarity=0.240 Sum_probs=93.4
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI 110 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L 110 (349)
+.+....+.|.|+|++|+||++++.. |.+||||++.+. ..+.+|+++++ +.||+|||+|.|.+... ...|
T Consensus 8 l~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L 86 (125)
T cd08393 8 LDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVL 86 (125)
T ss_pred EEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEE
Confidence 77788889999999999999999976 899999999984 23578999877 56999999999998643 4789
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
.|+|||+|.++++++||++.++|.+ +..+.....||+|.
T Consensus 87 ~~~V~d~~~~~~~~~iG~~~i~L~~-~~~~~~~~~W~~L~ 125 (125)
T cd08393 87 NLSVWHRDSLGRNSFLGEVEVDLGS-WDWSNTQPTWYPLQ 125 (125)
T ss_pred EEEEEeCCCCCCCcEeEEEEEecCc-cccCCCCcceEECc
Confidence 9999999999999999999999995 44445577899884
No 27
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.80 E-value=2.6e-18 Score=145.40 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=102.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCc
Q psy3181 45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDE 124 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd 124 (349)
+.+.|+|+|++|++|+..+.+|.+||||++.+++..++|+++++ +.||+|||.|.|.+......|.|+|||++..+ |+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKD-TLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCC-CCCCcccceEEEEecCCCCEEEEEEEECCCCC-CC
Confidence 35789999999999999999999999999999999999999876 56999999999998877889999999999875 89
Q ss_pred eeEEEEEeCCccccCCcceeeEEEccC---CCCCCcceEEEEEEEEEE
Q psy3181 125 LIAWAKIPIPSSVMKGETHEDWFPLSG---KQGEDKEGMINLVLSYTV 169 (349)
Q Consensus 125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~---k~g~~~~GeI~L~L~~~p 169 (349)
+||.+.+++.+ ... ....|++|.. +...+..|+|.|++.+.+
T Consensus 79 ~lG~~~~~l~~-~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 79 FLGQATLSADP-NDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred ceEEEEEeccc-CCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99999999985 332 2457888853 233567899999988764
No 28
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=2.2e-18 Score=147.49 Aligned_cols=119 Identities=17% Similarity=0.243 Sum_probs=98.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc----------CCeEEEEEEeec
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ----------GVTSIYLEIYDE 117 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~----------~~~~L~I~V~D~ 117 (349)
.|+|+|++|++|+.+|..|.+||||+|.+++...+|+++++ +.||.|||+|.|.+.. ....|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 58999999999999999999999999999999999999877 5699999999997421 125789999999
Q ss_pred CCCCCCceeEEEEEe-CCcccc---CCcceeeEEEccCCCCCCcceEEEEEEEEEEc
Q psy3181 118 CSFTMDELIAWAKIP-IPSSVM---KGETHEDWFPLSGKQGEDKEGMINLVLSYTVS 170 (349)
Q Consensus 118 d~~skdd~LG~v~I~-L~e~l~---~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~ 170 (349)
|..++|++||++.+. +. .+. .+....+|++|..+ + ...|+|++++.+.+.
T Consensus 81 d~~~~d~~iG~~~i~~~~-~~~~~~~~~~~~~W~~L~~~-~-~~~Geil~~~~~~~~ 134 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLV-KLDLEEDFPPKLQWFPIYKG-G-QSAGELLAAFELIEV 134 (135)
T ss_pred cCCCCCccceEEEeeeee-ecccCCCCCCCceEEEeecC-C-CchhheeEEeEEEEe
Confidence 999999999999873 33 222 34567899999743 2 468999999998764
No 29
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.79 E-value=5.6e-19 Score=150.57 Aligned_cols=110 Identities=14% Similarity=0.211 Sum_probs=94.3
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI 110 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L 110 (349)
+.+....+.|.|+|++|+||+..+.. |.+||||++.+. ..+.+|+++++ +.||+|||+|.|.++.. ...|
T Consensus 8 l~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L 86 (128)
T cd08392 8 LHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQL 86 (128)
T ss_pred EEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEE
Confidence 77788899999999999999999875 999999999985 23678999876 56999999999998654 5789
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccC--CcceeeEEEcc
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMK--GETHEDWFPLS 150 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~--g~~~~~W~~L~ 150 (349)
.+.|||.+.++++++||++.|+|.+.-.. +.....||+|.
T Consensus 87 ~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 87 QVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred EEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99999999999999999999999975333 44677999984
No 30
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=8.8e-19 Score=148.46 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=92.9
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGL-VTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI 110 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L 110 (349)
+.+....|.|.|+|++|+||+..+. .|.+||||++.+. ..+.+|+++++ +.||.|||+|.|.++.. ...|
T Consensus 8 l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L 86 (125)
T cd04029 8 LSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTL 86 (125)
T ss_pred EEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEE
Confidence 7778899999999999999998765 5899999999884 23578998776 56999999999998653 5689
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
.|+|||++.++++++||++.++|.+ +......+.||+|.
T Consensus 87 ~~~V~d~~~~~~~~~lG~~~i~l~~-~~~~~~~~~w~~l~ 125 (125)
T cd04029 87 QLSVWHYDRFGRNTFLGEVEIPLDS-WNFDSQHEECLPLH 125 (125)
T ss_pred EEEEEECCCCCCCcEEEEEEEeCCc-ccccCCcccEEECc
Confidence 9999999999999999999999995 54445578999984
No 31
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.79 E-value=7.8e-19 Score=147.54 Aligned_cols=115 Identities=24% Similarity=0.357 Sum_probs=99.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccC-----CeEEEEEEeecCCCC
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQG-----VTSIYLEIYDECSFT 121 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~-----~~~L~I~V~D~d~~s 121 (349)
+|.|+|++|++|+..+..+.+||||+|++++ ...+|++..+++.||.|||+|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999899999999999987 8889998766567999999999998766 588999999999888
Q ss_pred CCceeEEEEEeCCccccCCc----ceeeEEEccCCCCCCcceEEEE
Q psy3181 122 MDELIAWAKIPIPSSVMKGE----THEDWFPLSGKQGEDKEGMINL 163 (349)
Q Consensus 122 kdd~LG~v~I~L~e~l~~g~----~~~~W~~L~~k~g~~~~GeI~L 163 (349)
+|++||++.+++.+++..+. ....||.|..+. .+..|.|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~-g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS-GKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC-CCcCeEEeC
Confidence 89999999999998766443 247899998654 467899875
No 32
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=3.6e-18 Score=144.18 Aligned_cols=116 Identities=22% Similarity=0.147 Sum_probs=100.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc---CCeEEEEEEeecCCCCCCceeEEE
Q psy3181 53 VVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ---GVTSIYLEIYDECSFTMDELIAWA 129 (349)
Q Consensus 53 Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~---~~~~L~I~V~D~d~~skdd~LG~v 129 (349)
|++|++|+. ..|.+||||+|.+++...+|++++++ .||+|||+|.|.+.. ....|.|+|||++..++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~-~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENE-LNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCC-cCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEE
Confidence 689999988 67899999999999999999998875 599999999999864 368899999999999999999999
Q ss_pred EEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEccc
Q psy3181 130 KIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFF 172 (349)
Q Consensus 130 ~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~ 172 (349)
.++++++.. +.....|++|..+.+....|+|+++++|.|.+.
T Consensus 79 ~~~l~~l~~-~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVS-EGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHccc-CCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999996554 455788999976545455799999999998765
No 33
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=1.6e-18 Score=145.60 Aligned_cols=109 Identities=18% Similarity=0.343 Sum_probs=95.0
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE 113 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~ 113 (349)
+.+....|.|.|+|++|++|+..+..|.+||||++.+. ....+|+++++ +.||.|||+|.|.++.. ...|.|+
T Consensus 9 l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~ 87 (124)
T cd08387 9 LEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVL 87 (124)
T ss_pred EEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence 67788899999999999999999999999999999984 45688999877 56999999999998754 4689999
Q ss_pred EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
|||++.++++++||++.++|+++... ...+.||+|.
T Consensus 88 V~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~~W~~l~ 123 (124)
T cd08387 88 LYDFDQFSRDECIGVVELPLAEVDLS-EKLDLWRKIQ 123 (124)
T ss_pred EEECCCCCCCceeEEEEEecccccCC-CCcceEEECc
Confidence 99999999999999999999965444 4678999986
No 34
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.78 E-value=3.7e-18 Score=144.63 Aligned_cols=114 Identities=24% Similarity=0.380 Sum_probs=96.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC-------
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF------- 120 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~------- 120 (349)
.|.|+|++|++|+..|..|.+||||+|.+++...+|+++++ +.||.|||+|.|.+......|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~-t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQ-NLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecC-CCCCccceEEEEEecCCCCEEEEEEEECCCCcccccce
Confidence 68999999999999999999999999999988999999877 5699999999999866667899999999853
Q ss_pred ----CCCceeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEE
Q psy3181 121 ----TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVL 165 (349)
Q Consensus 121 ----skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L 165 (349)
+.+++||.+.+++.+ +.. ..+.||.|..+.+ ....|+|+|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~-~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRT-LSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHH-ccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 468999999999985 332 2579999986543 35789999864
No 35
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.78 E-value=7.7e-18 Score=143.20 Aligned_cols=116 Identities=21% Similarity=0.389 Sum_probs=99.0
Q ss_pred ceEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-EEEEecCCCCCCCccceEEEEEeccCCeEEEEEE
Q psy3181 46 VGRLNITVVQAKLVKNYGLV----------TKMDPYVRLRVGHCV-YETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEI 114 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~~----------G~sDPYV~V~lg~~~-~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V 114 (349)
.|.|+|+|++|++|+..+.. |.+||||++.+++.. .+|++.++ +.||.|||+|.|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~-~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVH-NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcC-CCCEEEEEE
Confidence 58899999999999988863 689999999999765 58888766 569999999999996 457899999
Q ss_pred eecCCCCCCceeEEEEEeCCccccC-CcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181 115 YDECSFTMDELIAWAKIPIPSSVMK-GETHEDWFPLSGKQGEDKEGMINLVLSYTV 169 (349)
Q Consensus 115 ~D~d~~skdd~LG~v~I~L~e~l~~-g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p 169 (349)
||++.++++++||.+.++|+++... +...+.|++|.+ .|.|+++++|..
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~------~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP------QGKLHVKIELKG 130 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC------CcEEEEEEEEec
Confidence 9999888899999999999965553 556789999973 499999998864
No 36
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.78 E-value=3.6e-18 Score=143.94 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCC--Cce
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVG-HCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTM--DEL 125 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~sk--dd~ 125 (349)
|+|+|++|++|+..+.+|.+||||++.++ ...++|+++++ +.||.|||+|.|.+.. ...|.|+|||++.+++ |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence 79999999999999999999999999996 67889999876 5599999999999966 6899999999998875 579
Q ss_pred eEEEEEeCCccccCCcceeeEEEccCCC---CCCcceEEEEEE
Q psy3181 126 IAWAKIPIPSSVMKGETHEDWFPLSGKQ---GEDKEGMINLVL 165 (349)
Q Consensus 126 LG~v~I~L~e~l~~g~~~~~W~~L~~k~---g~~~~GeI~L~L 165 (349)
||.+.+++.+++........|++|.... .....|+|.+.+
T Consensus 80 lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999998766554457899995422 245579998865
No 37
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=3.5e-18 Score=144.38 Aligned_cols=102 Identities=18% Similarity=0.339 Sum_probs=85.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--eEEEEEecCCCCCCCccceEEEEEeccC----CeEEEEEEee
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRV-G----H--CVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIYLEIYD 116 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-g----~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~I~V~D 116 (349)
+|+|+|++|++|+..+. |.+||||+|.+ | . ++++|++..+ +.||+|||+|.|.+... ...|.|.|||
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 48999999999999885 99999999997 3 2 3568888755 66999999999998743 3569999999
Q ss_pred cCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 117 ~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
+|..+++++||++.++|.++. .+...+.|++|...
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~-~~~~~~~w~~L~~~ 113 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIA-QAGSCACWLPLGRR 113 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCc-CCCcEEEEEECcCc
Confidence 998888999999999999654 44558899999753
No 38
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=1.8e-18 Score=144.79 Aligned_cols=108 Identities=17% Similarity=0.251 Sum_probs=92.3
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEecc----CCeEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSI 110 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L 110 (349)
+.+....+.|.|+|++|++|+..+..+.+||||+|.+.. ...+|+++++ +.||+|||+|.|.+.. ....|
T Consensus 9 l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l 87 (125)
T cd04031 9 LWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTL 87 (125)
T ss_pred EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEE
Confidence 667888899999999999999999989999999999864 5778998877 5599999999998643 25789
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
.|+|||++.++++++||++.++|++....+ ...||+|+
T Consensus 88 ~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~--~~~W~~L~ 125 (125)
T cd04031 88 EVTVWDYDRDGENDFLGEVVIDLADALLDD--EPHWYPLQ 125 (125)
T ss_pred EEEEEeCCCCCCCcEeeEEEEecccccccC--CcceEECc
Confidence 999999999999999999999999733333 46899984
No 39
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=3.4e-18 Score=143.43 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=94.6
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE 113 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~ 113 (349)
+.+....+.|.|+|++|+||+..+..|.+||||++.+. ...++|+++++ +.||+|||+|.|.+... ...|.|+
T Consensus 9 l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~ 87 (124)
T cd08385 9 LDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFS 87 (124)
T ss_pred EEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEE
Confidence 56677889999999999999999999999999999985 34678998876 55999999999998653 4689999
Q ss_pred EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
|||++.++++++||++.++|++ +..+...++|++|+
T Consensus 88 V~d~d~~~~~~~lG~~~i~l~~-~~~~~~~~~W~~l~ 123 (124)
T cd08385 88 VYDFDRFSKHDLIGEVRVPLLT-VDLGHVTEEWRDLE 123 (124)
T ss_pred EEeCCCCCCCceeEEEEEecCc-ccCCCCcceEEEcc
Confidence 9999999999999999999996 44466688999986
No 40
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=6.1e-18 Score=143.98 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=85.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCcee
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~L 126 (349)
+.|.|+|++|++|++++. .||||.|++++.+.+|++.++ . ||.|||+|.|.+......|.|+|||+|.+ .||+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~~k~kT~v~~~-~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l 75 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDK---FNTYVTLKVQNVKSTTIAVRG-S-QPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLV 75 (127)
T ss_pred ceEEEEEEEeeCCCCCCC---CCCeEEEEECCEEeEeeECCC-C-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence 689999999999987663 589999999999999999865 4 99999999999987777799999999965 79999
Q ss_pred EEEEEeCCccccC-CcceeeEEEccC
Q psy3181 127 AWAKIPIPSSVMK-GETHEDWFPLSG 151 (349)
Q Consensus 127 G~v~I~L~e~l~~-g~~~~~W~~L~~ 151 (349)
|++.|+|++++.. .....+||+|.+
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecCh
Confidence 9999999976653 333579999985
No 41
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=4.9e-18 Score=139.01 Aligned_cols=100 Identities=19% Similarity=0.296 Sum_probs=88.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCceeE
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELIA 127 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~LG 127 (349)
|.|+|++|++|+..+..+.+||||++++++...+|+++++ +.||.|||+|.|.+... ...|.|+|||++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999998899999999999999999999876 56999999999999864 5789999999885 78999
Q ss_pred EEEEeCCccccC-CcceeeEEEccCC
Q psy3181 128 WAKIPIPSSVMK-GETHEDWFPLSGK 152 (349)
Q Consensus 128 ~v~I~L~e~l~~-g~~~~~W~~L~~k 152 (349)
++.++|.++... +...+.||+|.++
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCCC
Confidence 999999976553 2457899999854
No 42
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.76 E-value=3.1e-18 Score=145.43 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=94.1
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEEEEEecCCCCCCCccceEEEEEeccC---CeE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG------HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTS 109 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg------~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~ 109 (349)
|+.+....+.|.|+|++|+||+..+..|.+||||++.+. ....+|+++++ +.||+|||+|.|.++.. ...
T Consensus 6 sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~ 84 (124)
T cd08680 6 GLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKT 84 (124)
T ss_pred EEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCE
Confidence 366788899999999999999999888999999999974 24788998876 56999999999998764 589
Q ss_pred EEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181 110 IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 110 L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L 149 (349)
|.|+|||.+.++++++||++.|+|.+.-..+.....||.|
T Consensus 85 L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 85 LQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999999999999999999999653444456789876
No 43
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.76 E-value=4e-18 Score=143.31 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=94.1
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY 111 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~ 111 (349)
+.+....+.|.|+|++|+||+..+..+.+||||+|.+. ....+|+++++ +.||+|||+|.|.+... ...|.
T Consensus 9 l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~ 87 (127)
T cd04030 9 IRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLD 87 (127)
T ss_pred EEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEE
Confidence 67788899999999999999999999999999999985 45789999887 45999999999998643 47899
Q ss_pred EEEeecCCC--CCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 112 LEIYDECSF--TMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 112 I~V~D~d~~--skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
|.|||++.+ +++++||++.++|.+ +..+.....||+|+
T Consensus 88 i~v~~~~~~~~~~~~~iG~~~i~l~~-l~~~~~~~~W~~L~ 127 (127)
T cd04030 88 VAVKNSKSFLSREKKLLGQVLIDLSD-LDLSKGFTQWYDLT 127 (127)
T ss_pred EEEEECCcccCCCCceEEEEEEeccc-ccccCCccceEECc
Confidence 999999875 689999999999996 44455678999984
No 44
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=1.9e-17 Score=139.15 Aligned_cols=115 Identities=24% Similarity=0.316 Sum_probs=98.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCC
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH---CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMD 123 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skd 123 (349)
.|+|+|++|++|+..+..|.+||||++.+++ ...+|++++++ .||.|||+|.|.+... ...|.|+|||++..+++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t-~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDT-LNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCC-CCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 5899999999999999999999999998864 36799998774 6999999999999774 57899999999998889
Q ss_pred ceeEEEEEeCCcccc-C-CcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181 124 ELIAWAKIPIPSSVM-K-GETHEDWFPLSGKQGEDKEGMINLVLSYTV 169 (349)
Q Consensus 124 d~LG~v~I~L~e~l~-~-g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p 169 (349)
++||++.++|.+... . +...+.|++|.+ .|.|++.+.+..
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEee
Confidence 999999999986433 2 556789999974 489999988864
No 45
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=7.1e-18 Score=147.14 Aligned_cols=106 Identities=13% Similarity=0.186 Sum_probs=90.5
Q ss_pred cceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEe-ec
Q psy3181 45 PVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIY-DE 117 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~-D~ 117 (349)
..|.|.|+|++|+||+..+ ..|.+||||++.+.. .+.+|+++++ +.||+|||+|.|.+......|.|+|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 3689999999999998864 678999999999842 3789999876 56999999999999866789999999 68
Q ss_pred CCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
+.++++++||++.|+|++ +..+.....||+|.++
T Consensus 106 ~~~~~~~~iG~~~i~L~~-l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 106 GRMDKKVFMGVAQILLDD-LDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCCceEEEEEEEccc-ccCCCCceeEEecCCc
Confidence 888899999999999995 5445557899999864
No 46
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=5.1e-18 Score=148.31 Aligned_cols=102 Identities=13% Similarity=0.284 Sum_probs=85.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEec-------------c---C
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLP-------------Q---G 106 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~-------------~---~ 106 (349)
+|.|+|++|+||+. .+|.+||||+|.+.. ...+|+++++ +.||+|||+|.|.+. . .
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999988 568999999999975 5778999877 569999999999984 1 1
Q ss_pred CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 107 VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 107 ~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
...|.|.|||++.+++|+|||++.|++.++...+.....||+|..+
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 3679999999999889999999999999644442457899999753
No 47
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.76 E-value=6.1e-18 Score=139.73 Aligned_cols=101 Identities=18% Similarity=0.335 Sum_probs=89.0
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEEEEEecCCCCCCCcc-ceEEEEEeccC---CeEEEEEEeecCCCCCC
Q psy3181 49 LNITVVQAKLVKNYGL-VTKMDPYVRLRVGHCVYETHTDPSGGKFPRW-NKEVFCLLPQG---VTSIYLEIYDECSFTMD 123 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~W-nEtF~F~V~~~---~~~L~I~V~D~d~~skd 123 (349)
|.|+|++|++|+.++. .|.+||||++.+++..++|+++++ +.||.| ||+|.|.++.. ...|.|+|||++.++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 6899999999999884 689999999999999999999877 459999 99999998764 47899999999999999
Q ss_pred ceeEEEEEeCCccccC--CcceeeEEEcc
Q psy3181 124 ELIAWAKIPIPSSVMK--GETHEDWFPLS 150 (349)
Q Consensus 124 d~LG~v~I~L~e~l~~--g~~~~~W~~L~ 150 (349)
++||++.+++.++... +...+.||+|.
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 9999999999976553 44578999986
No 48
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.76 E-value=8.8e-18 Score=141.10 Aligned_cols=105 Identities=23% Similarity=0.366 Sum_probs=93.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC----CeEEEEEEeecCCCCC
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIYLEIYDECSFTM 122 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~I~V~D~d~~sk 122 (349)
|.|.|+|++|++|+..+..+.+||||++.+++...+|++.++++.||.|||+|.|.+... ...|.|+|||.+.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 789999999999999998899999999999998899998876567999999999999765 5789999999999989
Q ss_pred CceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 123 DELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 123 dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
+++||.+.+++.+++..+ ..+.|+.|.++
T Consensus 81 d~~iG~~~i~l~~l~~~~-~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-CCcCceEeecc
Confidence 999999999999766544 47899999764
No 49
>PLN03008 Phospholipase D delta
Probab=99.76 E-value=1.4e-17 Score=176.24 Aligned_cols=133 Identities=24% Similarity=0.416 Sum_probs=112.3
Q ss_pred cccCCCCcceEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEE
Q psy3181 38 ASSLIQNPVGRLNITVVQAKLVKNYGL------------------------------------------VTKMDPYVRLR 75 (349)
Q Consensus 38 ~s~~~~~~~G~L~V~Iv~ArnL~~~d~------------------------------------------~G~sDPYV~V~ 75 (349)
+|++....+|+|.++|.+|++|+.+|. .+++||||+|.
T Consensus 5 ~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~ 84 (868)
T PLN03008 5 VSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVV 84 (868)
T ss_pred cccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEE
Confidence 567888899999999999999986332 24679999999
Q ss_pred ECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC
Q psy3181 76 VGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG 154 (349)
Q Consensus 76 lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g 154 (349)
+++. ..+|+++++ +.||+|||+|.|.+......|.|+|||+|.++ +++||++.|+|.+ +..|...+.|++|....+
T Consensus 85 Lg~~rv~RTrVi~n-~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~-L~~Ge~vd~Wl~Ll~~~~ 161 (868)
T PLN03008 85 VPQATLARTRVLKN-SQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRD-IASGERISGWFPVLGASG 161 (868)
T ss_pred ECCcceeeEEeCCC-CCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHH-cCCCCceEEEEEccccCC
Confidence 9875 569999876 55999999999999887789999999999998 6899999999995 666777899999976443
Q ss_pred --CCcceEEEEEEEEEEccce
Q psy3181 155 --EDKEGMINLVLSYTVSFFF 173 (349)
Q Consensus 155 --~~~~GeI~L~L~~~p~~~~ 173 (349)
.+..|+|+|+++|.|....
T Consensus 162 kp~k~~~kl~v~lqf~pv~~~ 182 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPFDQI 182 (868)
T ss_pred CCCCCCcEEEEEEEEEEcccc
Confidence 2346899999999998763
No 50
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.75 E-value=1.2e-17 Score=140.21 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=93.7
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEecc----CCeEEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYL 112 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I 112 (349)
+.+....+.|.|+|++|+||+..+..|.+||||++.+. ....+|+++++ +.||.|||+|.|.+.. ....|.+
T Consensus 9 l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~ 87 (125)
T cd08386 9 VSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYL 87 (125)
T ss_pred EEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEE
Confidence 66778889999999999999999999999999999983 46789999877 5699999999998432 2467999
Q ss_pred EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
+|||++.++++++||++.+++.+ +..+.....|+.|.
T Consensus 88 ~v~d~d~~~~~~~iG~~~i~l~~-l~~~~~~~~W~~l~ 124 (125)
T cd08386 88 QVLDYDRFSRNDPIGEVSLPLNK-VDLTEEQTFWKDLK 124 (125)
T ss_pred EEEeCCCCcCCcEeeEEEEeccc-ccCCCCcceEEecC
Confidence 99999999999999999999996 44566688999985
No 51
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.75 E-value=8.1e-18 Score=139.19 Aligned_cols=99 Identities=20% Similarity=0.355 Sum_probs=85.9
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC----CeEEEEEEeecC
Q psy3181 47 GRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIYLEIYDEC 118 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~I~V~D~d 118 (349)
|+|+|+|++|++|+..+.. |.+||||+|.+. ....+|+++++ +.||+|||+|.|.+... ...|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 7899999999999999988 999999999984 35689999887 56999999999987543 468999999999
Q ss_pred CCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
.+++|++||++.+++.+++. ...|+++.
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~----~~~~~~~~ 107 (111)
T cd04041 80 RFTADDRLGRVEIDLKELIE----DRNWMGRR 107 (111)
T ss_pred CCCCCCcceEEEEEHHHHhc----CCCCCccc
Confidence 99999999999999997653 34788875
No 52
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.75 E-value=1.3e-17 Score=139.16 Aligned_cols=108 Identities=15% Similarity=0.314 Sum_probs=91.8
Q ss_pred cCCCCcceEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI 110 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L 110 (349)
+.+....+.|.|+|++|+||+..+ ..+.+||||++.+.. ...+|+++++ +.||+|||+|.|.+... ...|
T Consensus 7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l 85 (123)
T cd08521 7 LSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTL 85 (123)
T ss_pred EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEE
Confidence 566778899999999999999988 778999999998741 4678988766 56999999999998653 4689
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L 149 (349)
.|+|||++.++++++||++.++|++. ..+...+.||+|
T Consensus 86 ~i~v~d~~~~~~~~~iG~~~i~l~~l-~~~~~~~~w~~l 123 (123)
T cd08521 86 QLSVWHHDRFGRNTFLGEVEIPLDSW-DLDSQQSEWYPL 123 (123)
T ss_pred EEEEEeCCCCcCCceeeEEEEecccc-cccCCCccEEEC
Confidence 99999999999999999999999965 444557899987
No 53
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.74 E-value=1.2e-17 Score=141.14 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=93.5
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSIYL 112 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L~I 112 (349)
+.+....+.|.|+|++|+||++.+..|.+||||++.+. ..+.+|++.++ .||+|||+|.|. ++.. ...|.+
T Consensus 9 l~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~ 86 (124)
T cd08389 9 FEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRF 86 (124)
T ss_pred EEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEE
Confidence 67788899999999999999999998999999998763 35778888654 599999999998 6542 578999
Q ss_pred EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181 113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151 (349)
Q Consensus 113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~ 151 (349)
+|||++.++++++||++.|+|+++ ..+.....||+|++
T Consensus 87 ~V~~~~~~~~~~~lG~~~i~L~~l-~~~~~~~~w~~L~p 124 (124)
T cd08389 87 RLYGVERMRKERLIGEKVVPLSQL-NLEGETTVWLTLEP 124 (124)
T ss_pred EEEECCCcccCceEEEEEEecccc-CCCCCceEEEeCCC
Confidence 999999999999999999999964 55556889999963
No 54
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.74 E-value=1.3e-17 Score=140.30 Aligned_cols=102 Identities=16% Similarity=0.277 Sum_probs=86.4
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEeec
Q psy3181 45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYDE 117 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D~ 117 (349)
..+.|.|+|++|+||++++ .|.+||||++.+.. .+.+|+++++ +.||+|||+|.|.+... ...|.|+|||+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 5689999999999999998 78999999999862 3668998876 55999999999998653 35789999999
Q ss_pred CCCC-CCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181 118 CSFT-MDELIAWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 118 d~~s-kdd~LG~v~I~L~e~l~~g~~~~~W~~L 149 (349)
+..+ ++++||++.|+|.+.. .+...+.||.|
T Consensus 88 ~~~~~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKSRDSGLLGCMSFGVKSIV-NQKEISGWYYL 119 (119)
T ss_pred CCCcCCCEEEEEEEecHHHhc-cCccccceEeC
Confidence 9876 4789999999999765 56657899986
No 55
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.73 E-value=3.5e-17 Score=136.78 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=93.6
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYG-LVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY 111 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d-~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~ 111 (349)
|+.+....+.|.|+|++|++|+..+ ..+.+||||++.+. ....+|+++++ +.||+|||+|.|.++.. ...|.
T Consensus 6 ~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~ 84 (123)
T cd08390 6 SVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLR 84 (123)
T ss_pred EEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEE
Confidence 3677888999999999999999998 68899999999974 35678888776 56999999999998653 46899
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
|+|||++..+++++||++.++|+++.. ......|++|.
T Consensus 85 i~v~d~~~~~~~~~iG~~~i~L~~l~~-~~~~~~w~~L~ 122 (123)
T cd08390 85 LSVYDVDRFSRHCIIGHVLFPLKDLDL-VKGGVVWRDLE 122 (123)
T ss_pred EEEEECCcCCCCcEEEEEEEeccceec-CCCceEEEeCC
Confidence 999999998889999999999996544 44477999986
No 56
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=2.9e-17 Score=135.96 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=80.0
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEeecCCC
Q psy3181 47 GRLNITVVQAKLVKNYGLV----TKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYDECSF 120 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~----G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D~d~~ 120 (349)
|.|.|+|++|++|++.+.. +.+||||+|.+++..++|+++++ +.||+|||.|.|.+.+. ...|.|+|||+|.+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 7899999999999987743 35899999999999999999987 46999999999998653 45799999999999
Q ss_pred CCCceeEEEEEeCCcccc
Q psy3181 121 TMDELIAWAKIPIPSSVM 138 (349)
Q Consensus 121 skdd~LG~v~I~L~e~l~ 138 (349)
++|++||++.++|++++.
T Consensus 80 ~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 80 SFNDYVATGSLSVQELLN 97 (108)
T ss_pred CCCcceEEEEEEHHHHHh
Confidence 999999999999996543
No 57
>KOG1028|consensus
Probab=99.73 E-value=4.6e-17 Score=164.18 Aligned_cols=160 Identities=18% Similarity=0.211 Sum_probs=127.0
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLE 113 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~ 113 (349)
+.+......|.|+|++|++|+.+|..|.+||||++.+. ..+.+|++.++ +.||+|||+|.|.++.. ...|.+.
T Consensus 160 l~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~ 238 (421)
T KOG1028|consen 160 LQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLS 238 (421)
T ss_pred EEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEE
Confidence 77788999999999999999999977889999999986 35789999876 56999999999997654 6889999
Q ss_pred EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC--CCCCcceEEEEEEEEEEccceeeeeeecCceeeeeeccc
Q psy3181 114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK--QGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHP 191 (349)
Q Consensus 114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k--~g~~~~GeI~L~L~~~p~~~~~~~~~~~~~~y~~~t~~~ 191 (349)
|||.|+|++|++||++.++|.++-. ......|.+|... ......|+|+++++|.|....+...+. .+..
T Consensus 239 V~~~drfsr~~~iGev~~~l~~~~~-~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~--------kar~ 309 (421)
T KOG1028|consen 239 VYDFDRFSRHDFIGEVILPLGEVDL-LSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVI--------KARN 309 (421)
T ss_pred EEecCCcccccEEEEEEecCccccc-cccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEE--------EecC
Confidence 9999999999999999999885433 3336789999753 222334899999999999776533221 2211
Q ss_pred cchhhhccCCCCCccccCCC
Q psy3181 192 LYAAKVFLGALPSDFLRPNN 211 (349)
Q Consensus 192 ~~~~k~~ig~lPd~flrv~~ 211 (349)
...+..+.++|+|++++.
T Consensus 310 --L~~~~~~~~~d~~Vk~~l 327 (421)
T KOG1028|consen 310 --LKSMDVGGLSDPYVKVTL 327 (421)
T ss_pred --CCcccCCCCCCccEEEEE
Confidence 233456778899999885
No 58
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.73 E-value=4e-17 Score=138.86 Aligned_cols=110 Identities=12% Similarity=0.142 Sum_probs=91.0
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSIY 111 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg---~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L~ 111 (349)
+.+....++|.|+|++|+||+..+.. |.+||||++.+. .++.+|+++++ +.||.|||+|.|. ++.. ...|.
T Consensus 9 l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~ 87 (128)
T cd08388 9 LRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLH 87 (128)
T ss_pred EEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEE
Confidence 56678889999999999999998876 899999999985 44678999877 5699999999994 5422 35799
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccC-CcceeeEEEcc
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMK-GETHEDWFPLS 150 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~-g~~~~~W~~L~ 150 (349)
++|||+|.+++|++||++.++|.++-.. +.....|.+|+
T Consensus 88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 88 FAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999999999999999999999965332 23367788875
No 59
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=6.3e-17 Score=136.14 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL 125 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~ 125 (349)
|.|.|+|++|++|+..+..|.+||||+|.+++ ...+|+++.+ +.||.|||+|.|.+......|.|+|||++.+++|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence 78999999999999999999999999999976 5688888766 569999999999988777899999999999999999
Q ss_pred eEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 126 IAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 126 LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
||++.+++.+++.. ..+.||.|..+
T Consensus 80 IG~~~~~l~~l~~~--~~~~~~~~~~~ 104 (120)
T cd04045 80 LGSVEINVSDLIKK--NEDGKYVEYDD 104 (120)
T ss_pred eeEEEEeHHHhhCC--CCCceEEecCC
Confidence 99999999976654 35788888654
No 60
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.72 E-value=1.2e-16 Score=132.11 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=88.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecCCCCCCc
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDECSFTMDE 124 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d~~skdd 124 (349)
|.|+|++|++|+.. |.+||||++.+++. ..+|+++++ .||.|||+|.|.+... ...|.|.+||.+..+++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence 78999999999877 78999999999875 478998766 5999999999998763 467888999988776666
Q ss_pred eeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEE
Q psy3181 125 LIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSY 167 (349)
Q Consensus 125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~ 167 (349)
++|.+.+... ..+...+.||+|.+..+ ....|+|+|+++|
T Consensus 77 ~~g~v~l~~~---~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGKVALSKL---DLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEEecCc---CCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 6776555443 33556789999986533 4568999999876
No 61
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.72 E-value=5.4e-17 Score=143.74 Aligned_cols=107 Identities=16% Similarity=0.250 Sum_probs=89.7
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEecc----CCeEEEEE
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLE 113 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~ 113 (349)
..+.|.|.|+|++|+||+..+..|.+||||++.+. ...++|++++++ .||.|||+|.|.+.. .+..|.|+
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t-~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKS-VNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCC-CCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 34789999999999999999999999999999873 357899998874 599999999998532 23679999
Q ss_pred EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181 114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151 (349)
Q Consensus 114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~ 151 (349)
|||++.++++++||++.+++.++...+ ..+.|+.|.+
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~~-~~~~w~~~~~ 138 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSYG-QAVDWMDSTG 138 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccCC-CccccccCCh
Confidence 999999999999999999999654444 3678888754
No 62
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=6.9e-17 Score=141.68 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=88.1
Q ss_pred EEEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEec--cCCeEEE
Q psy3181 48 RLNITVVQAKLVKNYGLVT--------------KMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLP--QGVTSIY 111 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G--------------~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~--~~~~~L~ 111 (349)
.|.|+|++|++|+.+|..+ .+||||+|.+++.+.+|+++++ +.||+|||+|.|.+. .....|.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcC-CCCCCcceEEEEEeeCCCcCCEEE
Confidence 3789999999999988554 6899999999999999999887 459999999999864 3357899
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCc------ceeeEEEccCC
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGE------THEDWFPLSGK 152 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~------~~~~W~~L~~k 152 (349)
|+|||+|..++|++||.+.+++.++...+. ..+.|+.|.+.
T Consensus 80 ~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 80 IQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999999999999999999996655442 34688888754
No 63
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.71 E-value=2.7e-17 Score=139.74 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=93.6
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI 110 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L 110 (349)
|+.+....|.|.|+|++|+||+..+..|.+||||+|.+. ....+|+++++ +.||+|||+|.|.+... ...|
T Consensus 5 ~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l 83 (133)
T cd08384 5 SLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTL 83 (133)
T ss_pred EEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEE
Confidence 367788899999999999999999999999999999985 24678999876 56999999999998653 4689
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
.|+|||+|..+++++||++.+++.. .+....+|+.+...
T Consensus 84 ~~~V~d~d~~~~~~~lG~~~i~l~~---~~~~~~~W~~~l~~ 122 (133)
T cd08384 84 EITVWDKDIGKSNDYIGGLQLGINA---KGERLRHWLDCLKN 122 (133)
T ss_pred EEEEEeCCCCCCccEEEEEEEecCC---CCchHHHHHHHHhC
Confidence 9999999999899999999999984 34446789987543
No 64
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=1.7e-16 Score=131.10 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=85.6
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC-----CeEEEEEEeecCCC
Q psy3181 46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-----VTSIYLEIYDECSF 120 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-----~~~L~I~V~D~d~~ 120 (349)
.-.|+|+|++|++|+ .|.+||||++++++++.+|+++++ +.||.|||+|.|.+... ...|.|+|||++.+
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 346899999999998 578999999999999999999876 45999999999997533 36799999999999
Q ss_pred CCCceeEEEEEeCCccccC--CcceeeEEEccC
Q psy3181 121 TMDELIAWAKIPIPSSVMK--GETHEDWFPLSG 151 (349)
Q Consensus 121 skdd~LG~v~I~L~e~l~~--g~~~~~W~~L~~ 151 (349)
+++++||++.++|+++... ......|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9899999999999965442 244678999863
No 65
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.7e-16 Score=131.40 Aligned_cols=102 Identities=21% Similarity=0.385 Sum_probs=86.6
Q ss_pred CCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCceeEEEEEeCCccccCC
Q psy3181 63 GLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG 140 (349)
Q Consensus 63 d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g 140 (349)
..+|.+||||+|.+++. ..+|+++++ +.||.|||+|.|.+.+. ...|.|.|||++.+ ++++||.+.++|++++..+
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 35789999999999874 578888766 56999999999999765 57799999999998 8999999999999776655
Q ss_pred cceeeEEEccCCCCCCcceEEEEEEEEEEc
Q psy3181 141 ETHEDWFPLSGKQGEDKEGMINLVLSYTVS 170 (349)
Q Consensus 141 ~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~ 170 (349)
...+.||+|.+. ..|+|++++.|.|.
T Consensus 86 ~~~~~w~~L~~~----~~G~i~~~~~~~p~ 111 (111)
T cd04052 86 SVGQQWFPLSGN----GQGRIRISALWKPV 111 (111)
T ss_pred hccceeEECCCC----CCCEEEEEEEEecC
Confidence 557899999852 46999999999984
No 66
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.69 E-value=1.8e-16 Score=138.14 Aligned_cols=91 Identities=27% Similarity=0.446 Sum_probs=84.2
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181 46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL 125 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~ 125 (349)
.|.|.|+|++|++|+..+. +.+||||+++++++..+|+++++ +.||+|||+|.|.+.+....+.|+|||++.+++|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKK-NLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcC-CCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCE
Confidence 3889999999999998887 89999999999999999999887 569999999999998888899999999999999999
Q ss_pred eEEEEEeCCcccc
Q psy3181 126 IAWAKIPIPSSVM 138 (349)
Q Consensus 126 LG~v~I~L~e~l~ 138 (349)
||.+.+++.+++.
T Consensus 79 iG~a~i~l~~l~~ 91 (145)
T cd04038 79 MGEAEIDLEPLVE 91 (145)
T ss_pred EEEEEEEHHHhhh
Confidence 9999999997554
No 67
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.69 E-value=1.6e-16 Score=135.80 Aligned_cols=108 Identities=16% Similarity=0.221 Sum_probs=91.0
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY 111 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~ 111 (349)
+.+....|.|.|+|++|++|+..+..|.+||||+|.+. + ...+|+++++ +.||.|||+|.|.++.. ...|.
T Consensus 8 l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~ 86 (136)
T cd08402 8 LRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLI 86 (136)
T ss_pred eEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEE
Confidence 77888999999999999999999999999999999984 2 3567887665 56999999999998643 35799
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~ 151 (349)
|+|||++.+++|++||++.+++.. . +....+|+++..
T Consensus 87 ~~v~d~~~~~~~~~iG~~~i~~~~-~--~~~~~~W~~~~~ 123 (136)
T cd08402 87 VTVLDYDRIGKNDPIGKVVLGCNA-T--GAELRHWSDMLA 123 (136)
T ss_pred EEEEeCCCCCCCceeEEEEECCcc-C--ChHHHHHHHHHh
Confidence 999999999999999999999983 2 444567888754
No 68
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=4.3e-16 Score=128.72 Aligned_cols=112 Identities=27% Similarity=0.355 Sum_probs=94.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCCcee
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~L 126 (349)
|+|+|++|++|+..+..|.+||||+|.+++ ...+|+++.+ +.+|.|||+|.|.+... ...+.|+|||++..+++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 579999999999999889999999999975 4578998776 66999999999998764 67899999999999899999
Q ss_pred EEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEE
Q psy3181 127 AWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINL 163 (349)
Q Consensus 127 G~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L 163 (349)
|++.+++.+ +..+...+.|++|.++. ....|.+.+
T Consensus 80 G~~~~~l~~-l~~~~~~~~~~~L~~~g-~~~~~~~~~ 114 (115)
T cd04040 80 GSAYIDLSD-LEPEETTELTLPLDGQG-GGKLGAVFL 114 (115)
T ss_pred EEEEEEHHH-cCCCCcEEEEEECcCCC-CccCceEEc
Confidence 999999996 44555688999998653 345577654
No 69
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.69 E-value=6.6e-17 Score=138.27 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=90.8
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEecc---CCeEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQ---GVTSIY 111 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~---~~~~L~ 111 (349)
+.+....+.|.|+|++|+||+..|..|.+||||++.+.. ...+|+++++ +.||.|||+|.|.++. ....|.
T Consensus 8 l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~ 86 (136)
T cd08404 8 LCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVE 86 (136)
T ss_pred EEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEE
Confidence 556677889999999999999999999999999998842 2567887766 5699999999999864 246799
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~ 151 (349)
|+|||+|.++++++||++.+++.. .+....+|+.|..
T Consensus 87 ~~v~d~d~~~~~~~iG~~~~~~~~---~~~~~~~w~~l~~ 123 (136)
T cd08404 87 FLVLDSDRVTKNEVIGRLVLGPKA---SGSGGHHWKEVCN 123 (136)
T ss_pred EEEEECCCCCCCccEEEEEECCcC---CCchHHHHHHHHh
Confidence 999999999999999999999995 3445678998864
No 70
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=5.1e-17 Score=138.81 Aligned_cols=110 Identities=18% Similarity=0.291 Sum_probs=92.4
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI 110 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L 110 (349)
|+.+....|+|.|+|++|+||+..+..|.+||||+|.+. + ...+|+++++ +.||.|||+|.|.++.. ...|
T Consensus 7 sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l 85 (136)
T cd08405 7 SLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTL 85 (136)
T ss_pred EEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEE
Confidence 377888899999999999999999999999999999883 2 3568888876 55999999999998632 4689
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
.|+|||++.++++++||++.+++.+. +...+.|+.+...
T Consensus 86 ~~~v~d~~~~~~~~~lG~~~i~~~~~---~~~~~~w~~~~~~ 124 (136)
T cd08405 86 IITVMDKDRLSRNDLIGKIYLGWKSG---GLELKHWKDMLSK 124 (136)
T ss_pred EEEEEECCCCCCCcEeEEEEECCccC---CchHHHHHHHHhC
Confidence 99999999999999999999999853 4446678887644
No 71
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=5.1e-17 Score=140.05 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=90.9
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI 110 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L 110 (349)
|+.+....+.|.|+|++|+||+..+..|.+||||+|.+.. .+.+|++.++ +.||+|||+|.|.++.. +..|
T Consensus 7 sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l 85 (136)
T cd08406 7 SLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSL 85 (136)
T ss_pred EEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEE
Confidence 4777888999999999999999999899999999999842 2557888766 56999999999998753 5889
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~ 151 (349)
.|+|||+|.++++++||++.+... ..|...++|..+..
T Consensus 86 ~~~V~~~d~~~~~~~iG~v~lg~~---~~g~~~~hW~~ml~ 123 (136)
T cd08406 86 RVTVAESTEDGKTPNVGHVIIGPA---ASGMGLSHWNQMLA 123 (136)
T ss_pred EEEEEeCCCCCCCCeeEEEEECCC---CCChhHHHHHHHHH
Confidence 999999999999999999999765 23454667877653
No 72
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.68 E-value=3.9e-16 Score=134.38 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=89.9
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--eEEEEEecCCCCCCCccceEEEEEeccC--CeEEE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG---H--CVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIY 111 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg---~--~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~ 111 (349)
|+++.++.|+|+|.|++|+||+.++..+..||||+|.+. . .+.+|++.+++..+|.|||+|.|.++.. +..|.
T Consensus 6 sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~ 85 (135)
T cd08692 6 GTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFL 85 (135)
T ss_pred EeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEE
Confidence 588999999999999999999998666778999999874 1 3678888777555799999999999754 46788
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
|+|||++..+++++||++.+..+.. .+...++|....
T Consensus 86 v~v~d~~~~~~n~~IG~v~lG~~~~--~~~~~~hW~~m~ 122 (135)
T cd08692 86 IKLYSRSSVRRKHFLGQVWISSDSS--SSEAVEQWKDTI 122 (135)
T ss_pred EEEEeCCCCcCCceEEEEEECCccC--CchhhhhHHHHH
Confidence 9999999999999999999999742 233356776653
No 73
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.68 E-value=3.3e-16 Score=133.64 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=80.6
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEec--cCCeEEEEEEeecCCC
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLP--QGVTSIYLEIYDECSF 120 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~--~~~~~L~I~V~D~d~~ 120 (349)
....|.|.|+|++|++|+. +..|.+||||+|.+++..++|+++++ +.||+|||+|.|... .....|.|+|||++.+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG 101 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence 4567899999999999984 67789999999999999999999987 459999999999743 2468999999999999
Q ss_pred CCCceeEEEEEeCCc
Q psy3181 121 TMDELIAWAKIPIPS 135 (349)
Q Consensus 121 skdd~LG~v~I~L~e 135 (349)
++|++||++.++|..
T Consensus 102 s~dd~IG~~~i~l~~ 116 (127)
T cd04032 102 WDDDLLGTCSVVPEA 116 (127)
T ss_pred CCCCeeEEEEEEecC
Confidence 999999999999994
No 74
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=1.3e-16 Score=137.92 Aligned_cols=108 Identities=20% Similarity=0.296 Sum_probs=90.3
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---Ce
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGL--VTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VT 108 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~--~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~ 108 (349)
|+.+.+..+.|.|+|++|+||+.++. .+.+||||+|.+.. .+.+|++.++ +.||+|||+|.|.++.. +.
T Consensus 7 sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~ 85 (138)
T cd08407 7 SISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAAS 85 (138)
T ss_pred EEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCcc
Confidence 47788999999999999999999983 35599999999853 2567888766 56999999999999864 57
Q ss_pred EEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 109 SIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 109 ~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
.|.|+|||+|.++++++||++.+.+.. .|+...+|..+.
T Consensus 86 ~L~~~V~d~d~~~~~d~iG~v~lg~~~---~g~~~~hW~~ml 124 (138)
T cd08407 86 SVELEVLNQDSPGQSLPLGRCSLGLHT---SGTERQHWEEML 124 (138)
T ss_pred EEEEEEEeCCCCcCcceeceEEecCcC---CCcHHHHHHHHH
Confidence 899999999999999999999999873 455566777664
No 75
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.67 E-value=1.8e-15 Score=132.02 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=98.1
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-EEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCC-CC-
Q psy3181 45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCV-YETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECS-FT- 121 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~-~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~-~s- 121 (349)
....|.|.|++|++|+.++ +|||.|.+++.. .+|++..+ +.||.|+|.|.|........+.|.||+.+. .+
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence 4567999999999998875 699999999877 59999877 459999999999876666889999986543 22
Q ss_pred --CCceeEEEEEeCCccccCCcceeeEEEccCCCCC---------CcceEEEEEEEEEEcc
Q psy3181 122 --MDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE---------DKEGMINLVLSYTVSF 171 (349)
Q Consensus 122 --kdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~---------~~~GeI~L~L~~~p~~ 171 (349)
++++||.+.|++++ +..+...+.||+|.+..+. ...+.|+|+++|.+..
T Consensus 83 ~~~~~~IG~V~Ip~~~-l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 83 KDKSQLIGTVNIPVTD-VSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred ccCCcEEEEEEEEHHH-hcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 57899999999995 5567779999999764432 3457999999998754
No 76
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.67 E-value=1.6e-15 Score=131.00 Aligned_cols=115 Identities=16% Similarity=0.283 Sum_probs=92.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eEEEEEecCCCCCCCcc-ceEEEEEeccCCeEEEEE
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------------CVYETHTDPSGGKFPRW-NKEVFCLLPQGVTSIYLE 113 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------------~~~kTkvvk~~~~nP~W-nEtF~F~V~~~~~~L~I~ 113 (349)
+..|++++|+||+ .+.+|++||||++.+.. +.++|+++++ +.||+| ||+|.|.+.. +..|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~-~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP-TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC-CCEEEEE
Confidence 4679999999998 77889999999999842 3689999877 569999 9999999864 4689999
Q ss_pred EeecCCCCC---CceeEEEEEeCCccccCC--cceeeEEEccCCC-CCCcceEEEEEE
Q psy3181 114 IYDECSFTM---DELIAWAKIPIPSSVMKG--ETHEDWFPLSGKQ-GEDKEGMINLVL 165 (349)
Q Consensus 114 V~D~d~~sk---dd~LG~v~I~L~e~l~~g--~~~~~W~~L~~k~-g~~~~GeI~L~L 165 (349)
|||++..++ +++||++.+++.+++..+ .....||+|..+. .....|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999875443 799999999999766543 3367899997432 246779998865
No 77
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.67 E-value=4.6e-16 Score=133.99 Aligned_cols=101 Identities=17% Similarity=0.382 Sum_probs=87.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEEEEEecCCCCCCCccceEEEEEeccC----------------Ce
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVG----HCVYETHTDPSGGKFPRWNKEVFCLLPQG----------------VT 108 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~----------------~~ 108 (349)
|.|+|++|++|+.+ ..|.+||||+|.++ ....+|+++++ +.||.|||+|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 67999999999988 77999999999998 67899999887 55999999999997653 46
Q ss_pred EEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 109 SIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 109 ~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
.|.|+|||++..+++++||++.+++.++.. ......||+|..+
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~ 121 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence 899999999998889999999999996554 4447899999865
No 78
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.67 E-value=1.7e-15 Score=133.46 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=91.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEEEEEecCCCCCCCccceEEEEEeccC---------CeEEEE
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV-----GHCVYETHTDPSGGKFPRWNKEVFCLLPQG---------VTSIYL 112 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l-----g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~---------~~~L~I 112 (349)
|.|.|....+.+|+..+..+.+||||++.+ ..++.+|+++++ +.||+|||+|.|.+... ...|.+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 344444444444778888889999999986 246899999887 55999999999998654 356999
Q ss_pred EEeecCCC-CCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181 113 EIYDECSF-TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168 (349)
Q Consensus 113 ~V~D~d~~-skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~ 168 (349)
+|||++.+ ++|++||++.++|+. +........|++|.. +.....|.|++++...
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~-l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r 137 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEP-LETKCEIHESVDLMD-GRKATGGKLEVKVRLR 137 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEccc-ccccCcceEEEEhhh-CCCCcCCEEEEEEEec
Confidence 99999986 479999999999995 444434567999873 2346789999999873
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.67 E-value=5.2e-16 Score=136.45 Aligned_cols=100 Identities=24% Similarity=0.385 Sum_probs=86.2
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eEEEEEecCCCCCCC
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----------------------------CVYETHTDPSGGKFP 93 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----------------------------~~~kTkvvk~~~~nP 93 (349)
.++.+.|.|+|++|++|+.+|.+|.+||||+|.++. ...+|+++++ +.||
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP 102 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNP 102 (153)
T ss_pred CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCC
Confidence 788999999999999999999999999999999853 2367888776 5699
Q ss_pred ccceEEEEEeccC-CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181 94 RWNKEVFCLLPQG-VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 94 ~WnEtF~F~V~~~-~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L 149 (349)
.|||+|.|.+... ...|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~--~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS--CGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC--CCCCCeEeC
Confidence 9999999998753 578999999998 8899999999997653 236899987
No 80
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.66 E-value=2.5e-15 Score=125.92 Aligned_cols=115 Identities=21% Similarity=0.338 Sum_probs=94.9
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecC
Q psy3181 48 RLNITVVQAKLVKNYG--LVTKMDPYVRLRV------GHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDEC 118 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d--~~G~sDPYV~V~l------g~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d 118 (349)
.|+|+|++|++|+..+ ..+.+||||++++ .....+|+++.+++.||.|||+|.|.+... ...|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999888 5789999999998 345689998776556999999999998754 367999999999
Q ss_pred CCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCC-CcceEEEEEEEE
Q psy3181 119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE-DKEGMINLVLSY 167 (349)
Q Consensus 119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~-~~~GeI~L~L~~ 167 (349)
.. ++++||.+.+++++ +..|. .|++|..+.+. ...|.|.+.+++
T Consensus 83 ~~-~~~~iG~~~~~l~~-l~~g~---~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDS-LRQGY---RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHH-hcCce---EEEEecCCCCCCCcceeEEEEEEE
Confidence 88 89999999999995 55553 78899765443 456899888775
No 81
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.66 E-value=1.8e-16 Score=135.15 Aligned_cols=109 Identities=20% Similarity=0.316 Sum_probs=89.7
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY 111 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~ 111 (349)
+.+....|.|+|+|++|++|++.+..|.+||||+|.+.. ...+|+++++ +.||.|||+|.|.++.. ...|.
T Consensus 7 ~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~ 85 (134)
T cd08403 7 LCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLI 85 (134)
T ss_pred EEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEE
Confidence 566788899999999999999999999999999999842 3567887655 56999999999998643 35699
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
|+|||++.++++++||++.+++. .. +...+.|+.+...
T Consensus 86 ~~v~d~~~~~~~~~IG~~~l~~~-~~--~~~~~~w~~~~~~ 123 (134)
T cd08403 86 IAVVDYDRVGHNELIGVCRVGPN-AD--GQGREHWNEMLAN 123 (134)
T ss_pred EEEEECCCCCCCceeEEEEECCC-CC--CchHHHHHHHHHC
Confidence 99999999999999999999987 22 3335678877543
No 82
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.66 E-value=1.7e-15 Score=128.16 Aligned_cols=116 Identities=23% Similarity=0.374 Sum_probs=93.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL 125 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~ 125 (349)
..|.|+|++|+ |...+..+.+||||+|.+++. ..+|+++++ +.||.|||+|.|.+.. ...|.|+|||++..+++++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcE
Confidence 46899999998 555555889999999999877 889999876 5699999999999864 4789999999999999999
Q ss_pred eEEEEEeCCccccC--Ccce--eeEEEccCCC--CCCcceEEEEEE
Q psy3181 126 IAWAKIPIPSSVMK--GETH--EDWFPLSGKQ--GEDKEGMINLVL 165 (349)
Q Consensus 126 LG~v~I~L~e~l~~--g~~~--~~W~~L~~k~--g~~~~GeI~L~L 165 (349)
||++.++|.+++.. +... ..|++|.... .....|.|.+.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999976542 3222 2488886332 235679998865
No 83
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.66 E-value=2.5e-16 Score=134.99 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=89.1
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY 111 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~ 111 (349)
+.+....|.|.|+|++|++|+..+..|.+||||++.+. . ...+|+++++ +.||.|||+|.|.++.. ...|.
T Consensus 7 l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~ 85 (135)
T cd08410 7 LNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLV 85 (135)
T ss_pred EEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEE
Confidence 66778889999999999999999999999999999973 2 3568888776 56999999999998643 34799
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
|+|||+|..+++++||++.+... ...+...++|+.|...
T Consensus 86 ~~V~d~d~~~~~~~iG~~~l~~~--~~~~~~~~~W~~l~~~ 124 (135)
T cd08410 86 FTVYGHNVKSSNDFIGRIVIGQY--SSGPSETNHWRRMLNS 124 (135)
T ss_pred EEEEeCCCCCCCcEEEEEEEcCc--cCCchHHHHHHHHHhC
Confidence 99999999999999999987654 1222235678887643
No 84
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.66 E-value=5.5e-16 Score=132.31 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=84.3
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEEEEEecCCCCCCCccceEEEEEeccC-----C
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-------HCVYETHTDPSGGKFPRWNKEVFCLLPQG-----V 107 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-------~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-----~ 107 (349)
+.+....+.|.|+|++|++|+..+..|.+||||+|.+. ....+|++++++ .||+|||+|.|.+... .
T Consensus 9 l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~~~~~~ 87 (133)
T cd04009 9 AYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT-LFPLFDESFEFNVPPEQCSVEG 87 (133)
T ss_pred EEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC-CCCccCCEEEEEechhhcccCC
Confidence 44566778999999999999999999999999999985 347899998774 5999999999998652 4
Q ss_pred eEEEEEEeecCCCCCCceeEEEEEeCCccc
Q psy3181 108 TSIYLEIYDECSFTMDELIAWAKIPIPSSV 137 (349)
Q Consensus 108 ~~L~I~V~D~d~~skdd~LG~v~I~L~e~l 137 (349)
..|.|+|||++.++++++||++.++|+++.
T Consensus 88 ~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 88 ALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred CEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 689999999999999999999999999654
No 85
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=7.3e-16 Score=130.21 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=89.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--EEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCCc
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCV--YETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMDE 124 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~--~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skdd 124 (349)
.|+|.|++|++|+..|..|.+||||++.+++.. .+|+++++ +.||+|||+|.|.+.. ....|.|+|||+|.+++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 378999999999999999999999999998765 46777776 5699999999998754 3578999999999999999
Q ss_pred eeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEE
Q psy3181 125 LIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV 169 (349)
Q Consensus 125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p 169 (349)
+||++.+++++.+..+ +..|+-+... ....|.++....+.|
T Consensus 80 ~iG~~~i~l~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFSK--HRATCGLPPT--YEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccch--HHHhccCCCc--ccccCceecCcccCc
Confidence 9999999999655321 2223333221 224577776555444
No 86
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.65 E-value=2.2e-16 Score=133.35 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=93.4
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIY 111 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~ 111 (349)
+.+....++|.|+|++|+||+..+..+.+||||++.+.. ...+|+++.+ +.||.|||+|.|.+... ...|.
T Consensus 7 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~ 85 (134)
T cd00276 7 LSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLV 85 (134)
T ss_pred EEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEE
Confidence 566777899999999999999999889999999999853 2568888776 55999999999998764 47899
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
|+|||.+..+++++||.+.+++++ .+...++|+.|...
T Consensus 86 ~~v~d~~~~~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~ 123 (134)
T cd00276 86 ITVVDKDSVGRNEVIGQVVLGPDS---GGEELEHWNEMLAS 123 (134)
T ss_pred EEEEecCCCCCCceeEEEEECCCC---CCcHHHHHHHHHhC
Confidence 999999988889999999999996 45557899999754
No 87
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=2.1e-16 Score=136.36 Aligned_cols=109 Identities=18% Similarity=0.322 Sum_probs=90.6
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEEEEEecCCCCCCCccceEEEEEeccC---CeE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH------CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTS 109 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~------~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~ 109 (349)
|+.+....++|.|+|++|+||+..+..|.+||||++.+.. .+.+|++.++ +.||+|||+|.|.++.. ...
T Consensus 7 sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~ 85 (138)
T cd08408 7 GLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVT 85 (138)
T ss_pred EeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccE
Confidence 4677889999999999999999999999999999998842 2468998876 56999999999999753 578
Q ss_pred EEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 110 IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 110 L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
|.|+|||.+.++++++||++.+++.. .. ....++|+.+.
T Consensus 86 L~~~V~~~~~~~~~~~iG~v~l~~~~-~~-~~~~~hW~~~l 124 (138)
T cd08408 86 LMFSVYNKRKMKRKEMIGWFSLGLNS-SG-EEEEEHWNEMK 124 (138)
T ss_pred EEEEEEECCCCCCCcEEEEEEECCcC-CC-chHHHHHHHHH
Confidence 99999999999999999999998873 22 12246788875
No 88
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.65 E-value=1.3e-15 Score=129.00 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=89.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEeecCC
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYDECS 119 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D~d~ 119 (349)
+.|.|+|++|++|+..+..+.+||||+|.+. ....+|+++++ +.+|.|||+|.|.+... ...|.|+|||++.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 8999999999999999888999999999986 35789999877 45999999999998654 4789999999998
Q ss_pred CCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 120 FTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 120 ~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
.+++++||++.++++++... ..+.||+|...
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~ 122 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQ 122 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC--ccCceEECcCc
Confidence 88899999999999976543 47899999753
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=1.7e-15 Score=127.06 Aligned_cols=106 Identities=21% Similarity=0.268 Sum_probs=86.8
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSI 110 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L 110 (349)
+.+....+.|.|+|++|++|+..+..+.+||||++.+. ....+|++++++ .||.|||+|.|. +... ...+
T Consensus 8 l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~-~~P~Wne~f~f~~~~~~~~~~~~l 86 (123)
T cd04035 8 LLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKT-RNPEFNETLTYYGITEEDIQRKTL 86 (123)
T ss_pred EEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCC-CCCCccceEEEcCCCHHHhCCCEE
Confidence 67788889999999999999999988999999999873 246899998774 599999999996 3322 4689
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEE
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFP 148 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~ 148 (349)
.|+|||++.+ .+++||++.++++++. .+...+-|+.
T Consensus 87 ~~~v~d~~~~-~~~~iG~~~i~l~~l~-~~~~~~~~~~ 122 (123)
T cd04035 87 RLLVLDEDRF-GNDFLGETRIPLKKLK-PNQTKQFNIC 122 (123)
T ss_pred EEEEEEcCCc-CCeeEEEEEEEcccCC-CCcceEeecc
Confidence 9999999988 7999999999999654 4433444443
No 90
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.64 E-value=4.6e-16 Score=133.82 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=90.9
Q ss_pred ccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeEE
Q psy3181 39 SSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSI 110 (349)
Q Consensus 39 s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L 110 (349)
|+.+....+.|.|+|++|+||+..+ .+.+||||++.+.. .+.+|++.++ +.||+|||+|.|.++.. ...|
T Consensus 7 sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L 84 (137)
T cd08409 7 SLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASL 84 (137)
T ss_pred EEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEE
Confidence 3667788899999999999999988 78899999998752 3568888765 56999999999998643 4789
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~ 151 (349)
.|+|||.+..+++++||++.+... ....+...++|..+..
T Consensus 85 ~~~V~~~~~~~~~~~lG~v~ig~~-~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 85 SLSVMQSGGVRKSKLLGRVVLGPF-MYARGKELEHWNDMLS 124 (137)
T ss_pred EEEEEeCCCCCCcceEEEEEECCc-ccCCChHHHHHHHHHh
Confidence 999999999999999999999976 3445555677887653
No 91
>KOG0696|consensus
Probab=99.61 E-value=2.2e-16 Score=155.60 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=91.3
Q ss_pred CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEee
Q psy3181 44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYD 116 (349)
Q Consensus 44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D 116 (349)
.....|+|+|.+|+||-++|.+|.+||||++++- ..+.+|++++. ++||+|||+|+|.+.+. +..|.|+|||
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWD 255 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWD 255 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEec
Confidence 3456799999999999999999999999999984 34788999887 56999999999998765 6889999999
Q ss_pred cCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181 117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151 (349)
Q Consensus 117 ~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~ 151 (349)
||+.+++||||..++.++++.... .+.||.|.+
T Consensus 256 WDrTsRNDFMGslSFgisEl~K~p--~~GWyKlLs 288 (683)
T KOG0696|consen 256 WDRTSRNDFMGSLSFGISELQKAP--VDGWYKLLS 288 (683)
T ss_pred ccccccccccceecccHHHHhhcc--hhhHHHHhh
Confidence 999999999999999999765533 678998864
No 92
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.58 E-value=4.2e-15 Score=169.73 Aligned_cols=123 Identities=17% Similarity=0.308 Sum_probs=101.9
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC--CeEEEEEEee
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG--VTSIYLEIYD 116 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~--~~~L~I~V~D 116 (349)
+.+....|.|.|+|++|+||. +.+|.+||||++++|+. +.+|++++++ .||+|||+|+|.+.++ +..|+|+|||
T Consensus 1973 ~~~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~-~nP~Wne~f~~~~~~p~~~~~l~iev~d 2049 (2102)
T PLN03200 1973 SLLQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHS-SSPEWKEGFTWAFDSPPKGQKLHISCKS 2049 (2102)
T ss_pred HHHhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCC-CCCCcccceeeeecCCCCCCceEEEEEe
Confidence 345567899999999999998 55799999999999955 8899999875 5999999999777654 4789999999
Q ss_pred cCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceE---EEEEEEEEE
Q psy3181 117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGM---INLVLSYTV 169 (349)
Q Consensus 117 ~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~Ge---I~L~L~~~p 169 (349)
+|.+++ +.||.+.|++.+++..+. ...||+|.++. ++.|. |++++.|.+
T Consensus 2050 ~d~f~k-d~~G~~~i~l~~vv~~~~-~~~~~~L~~~~--~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2050 KNTFGK-SSLGKVTIQIDRVVMEGT-YSGEYSLNPES--NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCccCC-CCCceEEEEHHHHhcCce-eeeeeecCccc--ccCCCcceEEEEEEecC
Confidence 999974 589999999997666554 88999998532 24577 999988864
No 93
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.58 E-value=2e-14 Score=120.30 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=81.1
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------EEEEEecCCCCCCCccceEEEEEec-cCCeEEEEEEeecCC----C
Q psy3181 53 VVQAKLVKNYGLVTKMDPYVRLRVGHC-------VYETHTDPSGGKFPRWNKEVFCLLP-QGVTSIYLEIYDECS----F 120 (349)
Q Consensus 53 Iv~ArnL~~~d~~G~sDPYV~V~lg~~-------~~kTkvvk~~~~nP~WnEtF~F~V~-~~~~~L~I~V~D~d~----~ 120 (349)
.++|++|+..+..|.+||||+|.+.+. ..+|+++++ +.||+|||+|.|.+. +....|.|+|||+|. +
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 478999999999999999999998654 489999887 459999999999864 345789999999997 7
Q ss_pred CCCceeEEEEEeCCccccCCcceeeEEEcc
Q psy3181 121 TMDELIAWAKIPIPSSVMKGETHEDWFPLS 150 (349)
Q Consensus 121 skdd~LG~v~I~L~e~l~~g~~~~~W~~L~ 150 (349)
+++++||++.+++.+++. +.....|+.|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~-~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVS-SPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhc-CCCcEEEEEcc
Confidence 899999999999997554 44466788884
No 94
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.54 E-value=1e-13 Score=116.64 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=68.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeec------
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDE------ 117 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~------ 117 (349)
|.|+|.+|+||+ |.+||||++.+.. ...+|+++++ +.||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence 689999999995 4589999998852 4689999977 5699999999999964 68999999998
Q ss_pred -CCCCCCceeEEEEEeCCc
Q psy3181 118 -CSFTMDELIAWAKIPIPS 135 (349)
Q Consensus 118 -d~~skdd~LG~v~I~L~e 135 (349)
|..++|++||.+.+.|+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccCcccEEEEEEEEECH
Confidence 567889999999999873
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.49 E-value=2.2e-13 Score=111.90 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=71.9
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------EEEEEecCCCCCCCccceEEEEEecc-----CCeEEEEEEeecCC
Q psy3181 51 ITVVQAKLVKNYGLVTKMDPYVRLRVGHC------VYETHTDPSGGKFPRWNKEVFCLLPQ-----GVTSIYLEIYDECS 119 (349)
Q Consensus 51 V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~------~~kTkvvk~~~~nP~WnEtF~F~V~~-----~~~~L~I~V~D~d~ 119 (349)
+-.++|++|+..|..|.+||||++.+.+. .++|+++++ +.||+|| +|.|.+.. ....|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 44569999999999999999999987542 589999887 4699999 78887532 15789999999999
Q ss_pred CCCCceeEEEEEeCCccc
Q psy3181 120 FTMDELIAWAKIPIPSSV 137 (349)
Q Consensus 120 ~skdd~LG~v~I~L~e~l 137 (349)
.++|++||++.++++++.
T Consensus 82 ~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 SGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCcEEEEEEEEHHHHh
Confidence 999999999999999655
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.47 E-value=2.5e-13 Score=104.34 Aligned_cols=81 Identities=33% Similarity=0.480 Sum_probs=72.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCCc
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH---CVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMDE 124 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~---~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skdd 124 (349)
|.|+|++|+||+..+..+..||||++.+++ ...+|++..++ .+|.|||+|.|.+.. ....|.|+|||++..++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 789999999999988889999999999986 67999998875 599999999999654 3466999999999999999
Q ss_pred eeEEEE
Q psy3181 125 LIAWAK 130 (349)
Q Consensus 125 ~LG~v~ 130 (349)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 97
>PLN02270 phospholipase D alpha
Probab=99.43 E-value=3.6e-12 Score=135.42 Aligned_cols=127 Identities=19% Similarity=0.277 Sum_probs=105.8
Q ss_pred CcceEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEec
Q psy3181 44 NPVGRLNITVVQAKLVKNYG------------------LVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLP 104 (349)
Q Consensus 44 ~~~G~L~V~Iv~ArnL~~~d------------------~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~ 104 (349)
..+|+|.|+|.+|++|+.++ ..+++||||.|.+++ ...+|+++.+...||.|+|.|.+.+.
T Consensus 5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence 56899999999999998632 125689999999986 46699999875569999999999999
Q ss_pred cCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCc--ceEEEEEEEEEEccc
Q psy3181 105 QGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDK--EGMINLVLSYTVSFF 172 (349)
Q Consensus 105 ~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~--~GeI~L~L~~~p~~~ 172 (349)
.....+.|+|.|.|.++ .++||.+.||+.+ +..|...+.|+++.+.++... ...|+++++|+|...
T Consensus 85 h~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~-~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 85 HMASNIIFTVKDDNPIG-ATLIGRAYIPVEE-ILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred cCcceEEEEEecCCccC-ceEEEEEEEEHHH-hcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 88899999999999888 5699999999996 445667899999987655433 348999999998655
No 98
>KOG1011|consensus
Probab=99.38 E-value=8.6e-13 Score=135.04 Aligned_cols=122 Identities=23% Similarity=0.350 Sum_probs=104.4
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC--
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF-- 120 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~-- 120 (349)
..+...++++|+.|.+|-++|..|++||||.+.++..+.+|+++... +||+|||.|.|...+....+++.|||+|.-
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~-lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQE-LNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhc-cchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 67889999999999999999999999999999999999999999874 599999999999988889999999999852
Q ss_pred ---------CCCceeEEEEEeCCccccCCcceeeEEEccCC-CCCCcceEEEEEEEEE
Q psy3181 121 ---------TMDELIAWAKIPIPSSVMKGETHEDWFPLSGK-QGEDKEGMINLVLSYT 168 (349)
Q Consensus 121 ---------skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k-~g~~~~GeI~L~L~~~ 168 (349)
..|||+|+..|.+.. + .|+ .+-||.|..+ +.....|.|+|.+...
T Consensus 370 sklrqkl~resddflgqtvievrt-l-sge-mdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRT-L-SGE-MDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEe-c-ccc-hhhhcchhhccchhhccceEEEEEEEE
Confidence 348999999998873 3 344 6789999753 2345679988887764
No 99
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.38 E-value=5.3e-12 Score=97.69 Aligned_cols=100 Identities=26% Similarity=0.498 Sum_probs=84.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEecc-CCeEEEEEEeecCCCCCCcee
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQ-GVTSIYLEIYDECSFTMDELI 126 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~-~~~~L~I~V~D~d~~skdd~L 126 (349)
|.|+|++|+++......+..+|||.+.+.. ...+|++..++ .||.||+.|.|.+.. ....+.|+|||.+..+.++++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~-~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNT-LNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCC-CCCcccceEEEEccCCCCCEEEEEEEecCCCCCCcee
Confidence 578999999998877778899999999987 88899888764 599999999999987 568899999999988888999
Q ss_pred EEEEEeCCccccCCcceeeEEEc
Q psy3181 127 AWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 127 G~v~I~L~e~l~~g~~~~~W~~L 149 (349)
|.+.+++.++.........|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999644245556778765
No 100
>KOG2059|consensus
Probab=99.37 E-value=1.3e-12 Score=135.13 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=106.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCce
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDEL 125 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~ 125 (349)
..|.|+|.+|+||++.+..|..||||.|.++. ...+|.++.+ ++.|-|.|.|.|+++..-..|.|-|||.| +++|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcceeeEEEEEeccc-cccccc
Confidence 46899999999999999999999999999986 5789999988 56999999999999988899999999999 999999
Q ss_pred eEEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEEEEccc
Q psy3181 126 IAWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSYTVSFF 172 (349)
Q Consensus 126 LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~~p~~~ 172 (349)
||.+.|.=++ +...+..+.|+.|..-+ .....|+|+|++.+++...
T Consensus 83 IGKvai~re~-l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 83 IGKVAIKRED-LHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred cceeeeeHHH-HhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence 9999999875 44344678999998643 3467899999999976543
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.31 E-value=2.1e-11 Score=95.18 Aligned_cols=88 Identities=23% Similarity=0.393 Sum_probs=77.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCCCCC
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC---VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSFTMD 123 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~---~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~skd 123 (349)
.|.|+|++|++|......+..+|||++++... ..+|+++.++. +|.|||+|.|.+... ...|.|+|||.+..+.+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~-~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~ 79 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTL-NPVWNETFEFEVPPPELAELEIEVYDKDRFGRD 79 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCC-CCcccceEEEEecCcccCEEEEEEEecCCccCC
Confidence 37899999999988877678999999999864 78999887754 999999999999776 78999999999988778
Q ss_pred ceeEEEEEeCCcc
Q psy3181 124 ELIAWAKIPIPSS 136 (349)
Q Consensus 124 d~LG~v~I~L~e~ 136 (349)
.++|.+.+++.+.
T Consensus 80 ~~~G~~~~~l~~~ 92 (101)
T smart00239 80 DFIGQVTIPLSDL 92 (101)
T ss_pred ceeEEEEEEHHHc
Confidence 9999999998854
No 102
>KOG1028|consensus
Probab=99.24 E-value=2.2e-11 Score=123.07 Aligned_cols=108 Identities=22% Similarity=0.336 Sum_probs=88.3
Q ss_pred cccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEEEEEecCCCCCCCccceEEEEEeccC---CeE
Q psy3181 38 ASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--H---CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTS 109 (349)
Q Consensus 38 ~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--~---~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~ 109 (349)
.|+++.+..|.|+|.|++|++|+.++..+.+||||++.+- . .+.+|.+.++ +.||+|||+|.|.++.. ...
T Consensus 289 ~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l~~~~ 367 (421)
T KOG1028|consen 289 LSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQLAEVS 367 (421)
T ss_pred EEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHhheeE
Confidence 3488899999999999999999999999999999999874 1 3556776655 56999999999998754 467
Q ss_pred EEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181 110 IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 110 L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L 149 (349)
|.|+|||+|.++++++||.+.+.... .+....+|...
T Consensus 368 l~l~V~d~d~~~~~~~iG~~~lG~~~---~~~~~~hW~~m 404 (421)
T KOG1028|consen 368 LELTVWDHDTLGSNDLIGRCILGSDS---TGEEVRHWQEM 404 (421)
T ss_pred EEEEEEEcccccccceeeEEEecCCC---CchHHHHHHHH
Confidence 99999999999999999998888773 23334456544
No 103
>PLN02223 phosphoinositide phospholipase C
Probab=99.22 E-value=2.3e-10 Score=117.52 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=88.9
Q ss_pred ceEEEEEEEEeecCCC-----CCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEE
Q psy3181 46 VGRLNITVVQAKLVKN-----YGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEI 114 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~-----~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V 114 (349)
...|.|+|+.|.+++. .+.....||||+|.+.+ ...+|++ .+++.||+|||+|.|.+..+ -..|+|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v-~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTV-KNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEe-CCCCcCceecceeEEEEEccCceEEEEEE
Confidence 4679999999998741 13346689999999853 3566764 56678999999999998655 46799999
Q ss_pred eecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEEE
Q psy3181 115 YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLSY 167 (349)
Q Consensus 115 ~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~~ 167 (349)
||+|..+.++|+|+.++|+. .+..|. ++++|..+.|.. ..-.|.+.+.|
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~-~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVS-ELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EecCCCCCCcEEEEEecchH-HhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 99998888999999999999 677787 678887665543 22345554443
No 104
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.20 E-value=8.3e-11 Score=101.19 Aligned_cols=90 Identities=14% Similarity=0.164 Sum_probs=73.7
Q ss_pred EEEEEEEeecCCCC--CCCCC--CCcEEEEEECC---eEEEEEecCCCCCC--CccceEEEEEecc--------------
Q psy3181 49 LNITVVQAKLVKNY--GLVTK--MDPYVRLRVGH---CVYETHTDPSGGKF--PRWNKEVFCLLPQ-------------- 105 (349)
Q Consensus 49 L~V~Iv~ArnL~~~--d~~G~--sDPYV~V~lg~---~~~kTkvvk~~~~n--P~WnEtF~F~V~~-------------- 105 (349)
|+|.|.+|++++.. +..|. +||||++.+.+ .+++|.++++ ++| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 78999999996544 33564 99999999864 5788999887 457 9999999988654
Q ss_pred -------C---CeEEEEEEeecCCCCCCceeEEEEEeCCccccCC
Q psy3181 106 -------G---VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG 140 (349)
Q Consensus 106 -------~---~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g 140 (349)
. ...|.++|||.|.+++|++||.+.++|. .+..+
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~-~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLS-ILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhh-hcccc
Confidence 1 3779999999999999999999999999 44444
No 105
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.19 E-value=9.7e-11 Score=126.91 Aligned_cols=136 Identities=16% Similarity=0.320 Sum_probs=109.5
Q ss_pred HHhhhhcccCccccccCCCCcceEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEE
Q psy3181 25 LALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYG--LVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFC 101 (349)
Q Consensus 25 ~~~~~~~~~~~~~~s~~~~~~~G~L~V~Iv~ArnL~~~d--~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F 101 (349)
+++.+.++|. ...+.|+|.|+|.+|++|+..+ ..+..|||+.+.+.+. .-+|++.++ +.||+|||+|.+
T Consensus 421 idi~~~m~~~-------s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi 492 (1227)
T COG5038 421 IDISQIMAGD-------SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYI 492 (1227)
T ss_pred EcHHHhhccc-------cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeec-cCCccccceEEE
Confidence 4455577763 2788999999999999999988 5799999999997543 448998877 559999999999
Q ss_pred EeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEc
Q psy3181 102 LLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVS 170 (349)
Q Consensus 102 ~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~ 170 (349)
.+..-...|.++|||.+.+.+|+.+|.+.++|..+...+...++-+.+... .+..|+|...+.|.|.
T Consensus 493 ~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~--~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 493 LLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN--TKNVGRLTYDLRFFPV 559 (1227)
T ss_pred EecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeeecc--CccceEEEEeeeeecc
Confidence 998888999999999998999999999999999555554444456665422 3467999999998764
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=99.14 E-value=1e-09 Score=114.67 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=84.2
Q ss_pred ceEEEEEEEEeecCCCC------CCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEE
Q psy3181 46 VGRLNITVVQAKLVKNY------GLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLE 113 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~------d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~ 113 (349)
...|.|+|+.|.+++.. +.....||||+|.+. ..+.+|+++.++ .||+|||+|.|.+..+ -..|+|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEE
Confidence 57899999999887421 223446999999874 356789998876 6999999999997654 3678999
Q ss_pred EeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC
Q psy3181 114 IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG 154 (349)
Q Consensus 114 V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g 154 (349)
|||+|..+.++|+|++++|+. .+..|. .|++|..+.|
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~-~Lr~Gy---R~VpL~~~~G 584 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVS-ELRPGI---RSVPLHDKKG 584 (599)
T ss_pred EEecCCCCCCCeEEEEEcchh-HhcCCc---eeEeCcCCCC
Confidence 999999888999999999999 677787 6999976655
No 107
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.13 E-value=1.5e-10 Score=125.50 Aligned_cols=124 Identities=21% Similarity=0.260 Sum_probs=98.2
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCC
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSF 120 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~ 120 (349)
-...|-|.|.+.+|.||+..|.+|.+||||++.+.++ .++|+++++ ++||+|||.|.+++... ...+.+.|+|||..
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeeccccceEEEEEeecccC
Confidence 3457899999999999999999999999999999876 789999887 45999999999999754 68899999999999
Q ss_pred CCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181 121 TMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168 (349)
Q Consensus 121 skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~ 168 (349)
.+++.||.+.++|+. +..+.....-.+|.++......|.++....|.
T Consensus 1115 ~knd~lg~~~idL~~-l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r 1161 (1227)
T COG5038 1115 EKNDLLGTAEIDLSK-LEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFR 1161 (1227)
T ss_pred CCccccccccccHhh-cCcCCccceeeeccCcceEecccEeecceecc
Confidence 999999999999994 54443344445666543123345555544443
No 108
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.08 E-value=1.6e-09 Score=112.98 Aligned_cols=118 Identities=17% Similarity=0.256 Sum_probs=89.0
Q ss_pred cceEEEEEEEEeecCCC------CCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEE
Q psy3181 45 PVGRLNITVVQAKLVKN------YGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYL 112 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~------~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I 112 (349)
...+|.|+|+.|.+++. .+.....||||+|.+.+ ...+|++..+ +.||.|||+|.|.+.-+ -..|+|
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf 545 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRV 545 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEE
Confidence 45789999999998641 12334579999998742 3568886555 67999999999997644 488999
Q ss_pred EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCC-cceEEEEEEEE
Q psy3181 113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED-KEGMINLVLSY 167 (349)
Q Consensus 113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~-~~GeI~L~L~~ 167 (349)
+|||+|..++|+|+|+.++|+. .+..|. +.++|..+.|.. ..-.|.+.++|
T Consensus 546 ~V~d~d~~~~ddfiGQ~~lPv~-~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHDINEKDDFGGQTCLPVS-EIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEECCCCCCCCEEEEEEcchH-HhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999998888999999999999 677787 567887665543 22355555544
No 109
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.06 E-value=3.6e-09 Score=110.19 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=89.5
Q ss_pred cceEEEEEEEEeecCC----C--CCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEE
Q psy3181 45 PVGRLNITVVQAKLVK----N--YGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYL 112 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~----~--~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I 112 (349)
...+|.|+|+.|.+++ . .+.....||||+|.+. ..+.+|+++.++. ||.|||+|.|.+..+ -..|+|
T Consensus 450 ~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~-nP~W~e~f~F~i~~PeLAllRf 528 (581)
T PLN02222 450 VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNW-IPAWDEVFEFPLTVPELALLRL 528 (581)
T ss_pred ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCC-CcccCCeeEEEEEcCceeEEEE
Confidence 3568999999998742 2 2223567999999984 3467899998864 999999999987654 478999
Q ss_pred EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCc-ceEEEEEEEE
Q psy3181 113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDK-EGMINLVLSY 167 (349)
Q Consensus 113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~-~GeI~L~L~~ 167 (349)
+|||+|..+.++|+|+.++|+. .+..|. +.++|..+.|... .-.|.+.+.|
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~-~Lr~Gy---R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVW-ELSQGI---RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchh-hhhCcc---ceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999998888999999999999 688887 5678876655432 2345555443
No 110
>KOG1328|consensus
Probab=99.05 E-value=7.2e-11 Score=122.45 Aligned_cols=156 Identities=18% Similarity=0.274 Sum_probs=112.1
Q ss_pred cchhhhHHHHHHHHhhhhcccC--cccc---cc-CCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---------
Q psy3181 13 SNHQTDLDQQTALALQNELAGA--YSTA---SS-LIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--------- 77 (349)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~--~~~~---s~-~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg--------- 77 (349)
++.+|+.+.-..-.+++.+-|- .-++ .. ....+.--|.|.+..|+||-++|.+|.+|||+...+-
T Consensus 74 ~~d~e~~~e~l~sy~~~~fg~~~~eh~~~~e~v~~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~p 153 (1103)
T KOG1328|consen 74 QGDVEESQESLYKYVRNAFGGDAAEHNALMEKVKQNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSP 153 (1103)
T ss_pred CCcchhhhhHHHHHHHHHhCCCHhHhhhccccccCCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccCh
Confidence 4556666665565666655441 0000 01 2233444567888999999999999999999997441
Q ss_pred -----------------C----e-EEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCC---------------
Q psy3181 78 -----------------H----C-VYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECS--------------- 119 (349)
Q Consensus 78 -----------------~----~-~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~--------------- 119 (349)
+ + ..-|.+ +++++||.|+|.|.|.+.+- ...+++.+||+|.
T Consensus 154 ra~~eqrdgl~~~~~~~GpiPAKlIkatsv-k~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~ 232 (1103)
T KOG1328|consen 154 RALHEQRDGLMHRFQDTGPIPAKLIKATSV-KKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVT 232 (1103)
T ss_pred hhhhhhhhhhhhccccCCCCcHHHhhhccc-ccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhh
Confidence 0 0 122444 55678999999999999876 5889999999884
Q ss_pred ------------------CCC---CceeEEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEEEEcc
Q psy3181 120 ------------------FTM---DELIAWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSYTVSF 171 (349)
Q Consensus 120 ------------------~sk---dd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~~p~~ 171 (349)
.+. |||+|.+.|||.++...| .++||.|+++. ..+..|.++|.+|+...+
T Consensus 233 G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~G--ld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 233 GFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPDG--LDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcch--HHHHhccCcccccccccceEEEEEEEeeec
Confidence 122 899999999999877776 68999999764 367899999999986443
No 111
>PLN02228 Phosphoinositide phospholipase C
Probab=99.05 E-value=3.3e-09 Score=110.20 Aligned_cols=120 Identities=16% Similarity=0.270 Sum_probs=93.1
Q ss_pred ceEEEEEEEEeecCCC---C---CCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCcc-ceEEEEEeccC-CeEEEE
Q psy3181 46 VGRLNITVVQAKLVKN---Y---GLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRW-NKEVFCLLPQG-VTSIYL 112 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~---~---d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~W-nEtF~F~V~~~-~~~L~I 112 (349)
...|.|+|++|.+|+. . +.....||||+|.+. ...++|+++.++ .||.| ||+|.|.+..+ -..|+|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCC-CCceECCCeEEEEEEcCceeEEEE
Confidence 4579999999998731 1 223458999999874 246799998765 59999 99999997654 478999
Q ss_pred EEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCc-ceEEEEEEEEEEc
Q psy3181 113 EIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDK-EGMINLVLSYTVS 170 (349)
Q Consensus 113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~-~GeI~L~L~~~p~ 170 (349)
+|+|+|..+.++|+|+.++|++ .+..|. +.++|..+.|... ...|.+.+.+.+.
T Consensus 509 ~V~D~d~~~~d~figq~~lPv~-~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTCLPLP-ELKSGV---RAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEeCCCCCCCCEEEEEEcchh-HhhCCe---eEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 9999998888999999999999 678887 5678877666443 4568887777654
No 112
>KOG0169|consensus
Probab=99.04 E-value=1.5e-09 Score=113.85 Aligned_cols=117 Identities=20% Similarity=0.305 Sum_probs=91.1
Q ss_pred EEEEEEEEeecCC-CCCC---CCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeec
Q psy3181 48 RLNITVVQAKLVK-NYGL---VTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDE 117 (349)
Q Consensus 48 ~L~V~Iv~ArnL~-~~d~---~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~ 117 (349)
+|.|+|++|.+++ +.+. ...+||||.|++.+ ...+|+++++++-||.|+|+|.|.+..+ -.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999753 3322 25689999999853 4689998888888999999999998765 47789999999
Q ss_pred CCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCC-CcceEEEEEEEEE
Q psy3181 118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE-DKEGMINLVLSYT 168 (349)
Q Consensus 118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~-~~~GeI~L~L~~~ 168 (349)
|..++|||+|+.++|++ .+..|. +-++|.++.|. -....|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~-~L~~Gy---RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVS-ELRQGY---RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHH-HhhCce---eeeeecCCCCccccceeEEEEEEEe
Confidence 99999999999999999 577776 44577665442 2234566655554
No 113
>PLN02352 phospholipase D epsilon
Probab=98.96 E-value=6.7e-09 Score=110.48 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=101.0
Q ss_pred CCcceEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCC-eEEEEEEe
Q psy3181 43 QNPVGRLNITVVQAKLVKNY----GLV-TKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGV-TSIYLEIY 115 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~----d~~-G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~-~~L~I~V~ 115 (349)
...+|+|.++|.+|+-+... +.. ...||||.|.+++. ..+| .+ ..||.|+|.|.+.+.... ..+.|+|.
T Consensus 6 ~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 6 KFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred cccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeeecCCcEEEEEe
Confidence 46789999999999844322 111 12399999999864 4566 33 349999999999998776 78999998
Q ss_pred ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcce-EEEEEEEEEEccceeeeeeecCc-----eeeeeec
Q psy3181 116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEG-MINLVLSYTVSFFFFLLLLENSI-----SYLEITK 189 (349)
Q Consensus 116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~G-eI~L~L~~~p~~~~~~~~~~~~~-----~y~~~t~ 189 (349)
| ..++||.+.+|+.+++..+...+.|+++.+.++....| .|+++++|+|.... ..|..++ ..+|.+.
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~gvp~~~ 154 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE--PTWCKILENGSFQGLRNAT 154 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC--cchhhcccCCCcCCcCCcc
Confidence 8 25799999999997555434489999998766544445 99999999998763 2243332 2355555
Q ss_pred cccc
Q psy3181 190 HPLY 193 (349)
Q Consensus 190 ~~~~ 193 (349)
.|..
T Consensus 155 f~~r 158 (758)
T PLN02352 155 FPQR 158 (758)
T ss_pred cccC
Confidence 5554
No 114
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.91 E-value=4.8e-09 Score=86.50 Aligned_cols=82 Identities=17% Similarity=0.278 Sum_probs=67.5
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCc
Q psy3181 49 LNITVVQAKLVKNYG---LVTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDE 124 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d---~~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd 124 (349)
|.|+|..++|+...+ ..+.+||||.|++++. +.+|++. .||.|||+|.|.+ +....+.++|||+.. ...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s----rnd~WnE~F~i~V-dk~nEiel~VyDk~~-~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS----RNDRWNEDFEIPV-EKNNEEEVIVYDKGG-DQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC----CCCcccceEEEEe-cCCcEEEEEEEeCCC-Ceec
Confidence 679999999998887 5688999999999976 8888874 4999999999999 457999999999863 2345
Q ss_pred eeEEEEEeCCcc
Q psy3181 125 LIAWAKIPIPSS 136 (349)
Q Consensus 125 ~LG~v~I~L~e~ 136 (349)
.+|..-+.++++
T Consensus 75 Pi~llW~~~sdi 86 (109)
T cd08689 75 PVGLLWLRLSDI 86 (109)
T ss_pred ceeeehhhHHHH
Confidence 678777777754
No 115
>KOG1264|consensus
Probab=98.88 E-value=1.2e-08 Score=107.28 Aligned_cols=122 Identities=16% Similarity=0.254 Sum_probs=96.0
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccc-eEEEEEeccC-CeEEEEEEeecC
Q psy3181 46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWN-KEVFCLLPQG-VTSIYLEIYDEC 118 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~Wn-EtF~F~V~~~-~~~L~I~V~D~d 118 (349)
.-+|.|+|+.|+.|+..+. |.+.|||.|.+- +.+++|+++..++.||+|| |+|+|.+.++ -..|++.|+|+|
T Consensus 1064 p~~lsv~vigaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred ceEEEEEEeeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 4678999999999996654 667899999863 4577888877788999999 9999999876 588999999999
Q ss_pred CCCCCceeEEEEEeCCccccCCcceeeEEEccCCCC-CCcceEEEEEEEEEEccc
Q psy3181 119 SFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQG-EDKEGMINLVLSYTVSFF 172 (349)
Q Consensus 119 ~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g-~~~~GeI~L~L~~~p~~~ 172 (349)
.++...|||++++|+. .+..|. +.++|...-. +-.-..|.+.+...|..+
T Consensus 1143 mfs~~~FiaqA~yPv~-~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVK-AIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred ccCCcceeeeeecchh-hhhccc---eeeecccCchhhhhhhhheeeeEeccccC
Confidence 9998889999999999 677665 4567753211 112356777777776554
No 116
>KOG1031|consensus
Probab=98.85 E-value=8.2e-09 Score=105.36 Aligned_cols=120 Identities=18% Similarity=0.355 Sum_probs=100.3
Q ss_pred ceEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeEEEEEecCCCCCCCccc-eEEEEEeccC---CeEEEEEEeecCCC
Q psy3181 46 VGRLNITVVQAKLVKNYGLV-TKMDPYVRLRVGHCVYETHTDPSGGKFPRWN-KEVFCLLPQG---VTSIYLEIYDECSF 120 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~~-G~sDPYV~V~lg~~~~kTkvvk~~~~nP~Wn-EtF~F~V~~~---~~~L~I~V~D~d~~ 120 (349)
.|+|-|+|+.|++|+-+|.. ...|.||.|++++..++|.+..+ .+||.|| +-|.|+|.+. ++.|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 47899999999999999874 45799999999999999999776 5699999 4599999765 58899999999999
Q ss_pred CCCceeEEEEEeCCcccc---------CCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181 121 TMDELIAWAKIPIPSSVM---------KGETHEDWFPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 121 skdd~LG~v~I~L~e~l~---------~g~~~~~W~~L~~k~g~~~~GeI~L~L~~ 167 (349)
+.+|.||.+.|+++.+.. .|.+...|+++... ..-.+|+|.+-+..
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-ihgirgeinvivkv 135 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-IHGIRGEINVIVKV 135 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-cccccceeEEEEEE
Confidence 999999999999986532 45667789999753 23367999987763
No 117
>KOG1328|consensus
Probab=98.68 E-value=8.4e-09 Score=107.40 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=83.7
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEEEecCCCCCCCccceEEEEEeccC-----C
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------CVYETHTDPSGGKFPRWNKEVFCLLPQG-----V 107 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------~~~kTkvvk~~~~nP~WnEtF~F~V~~~-----~ 107 (349)
..+.....+|.|.|+-|+++-+-|.+|.+||||+|+++. ..++|+++++ ++||+|+|+|.|.|+.+ .
T Consensus 940 ~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~ 1018 (1103)
T KOG1328|consen 940 AYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTET 1018 (1103)
T ss_pred EEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCcccccccc
Confidence 445677778899999999999999999999999999874 3678999887 56999999999999765 3
Q ss_pred eEEEEEEeecCCCCCCceeEEEEEeCCcc
Q psy3181 108 TSIYLEIYDECSFTMDELIAWAKIPIPSS 136 (349)
Q Consensus 108 ~~L~I~V~D~d~~skdd~LG~v~I~L~e~ 136 (349)
.-+.|+|+|+|-++.+||-|++.+.|.++
T Consensus 1019 Am~~FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1019 AMLHFTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred ceEEEEeeccceecccccchHHHHhhCCC
Confidence 66899999999999999999999999854
No 118
>KOG2059|consensus
Probab=98.62 E-value=3.2e-08 Score=103.05 Aligned_cols=116 Identities=14% Similarity=0.273 Sum_probs=84.0
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCeE----EEEEecCCCCCCCccceEEEEEeccC----------------CeEE
Q psy3181 51 ITVVQAKLVKNYGLVTKMDPYVRLRVGHCV----YETHTDPSGGKFPRWNKEVFCLLPQG----------------VTSI 110 (349)
Q Consensus 51 V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~----~kTkvvk~~~~nP~WnEtF~F~V~~~----------------~~~L 110 (349)
+.+..++.+-+.+. |.+||||++...+.. .+|++.++++ +|.|+|.|.|.+..+ ...+
T Consensus 135 c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kkt~-~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 135 CHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKKTT-NPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeeecc-CcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 33344445444443 569999999876543 5888887754 999999999987533 2568
Q ss_pred EEEEee-cCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCC-C-----CCcceEEEEEEEEEE
Q psy3181 111 YLEIYD-ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQ-G-----EDKEGMINLVLSYTV 169 (349)
Q Consensus 111 ~I~V~D-~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g-----~~~~GeI~L~L~~~p 169 (349)
++++|+ ++....++|+|++.+++.... .......||.|.+++ | ...-|.+++.+.|+-
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~-~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLR-QKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhh-hccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 899999 666667999999999999543 334467899997642 1 234589999999974
No 119
>KOG1326|consensus
Probab=98.55 E-value=2.1e-08 Score=107.41 Aligned_cols=169 Identities=14% Similarity=0.113 Sum_probs=120.8
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEE---ec-------cCCeEEEEEE
Q psy3181 45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCL---LP-------QGVTSIYLEI 114 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~---V~-------~~~~~L~I~V 114 (349)
.+..+++.|.+|+.|...|..+.+|||+.+.+.++...|-++.+ ++||.|+++..|. +. ..-..+.++|
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~ 282 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV 282 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence 34457778889999999999999999999999999999999887 6699999999986 21 1236688999
Q ss_pred eecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEEEccceeeeeeecCceeeeeeccccch
Q psy3181 115 YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSFFFFLLLLENSISYLEITKHPLYA 194 (349)
Q Consensus 115 ~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~~~~~~~~~~~~y~~~t~~~~~~ 194 (349)
||.++.+.++|+|+...... +... ...-.|+++.. +....|++.++... ++.+. +
T Consensus 283 yd~dr~g~~ef~gr~~~~p~-V~~~-~p~lkw~p~~r--g~~l~gd~l~a~el----------iq~~~---~-------- 337 (1105)
T KOG1326|consen 283 YDLDRSGINEFKGRKKQRPY-VMVQ-CPALKWVPTMR--GAFLDGDVLIAAEL----------IQIGK---P-------- 337 (1105)
T ss_pred ehhhhhchHHhhcccccceE-EEec-CCccceEEeec--ccccccchhHHHHH----------HhhcC---C--------
Confidence 99999999999999877766 4443 33568999863 23456776652211 11110 0
Q ss_pred hhhccCCCCCccccCCCCCCCcCCCCCcchHHHHHHHHHHHhhcccccccCCCCCCCcceEEEEeeeeeeccccCcCcee
Q psy3181 195 AKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQILSIGRYLVPTYQ 274 (349)
Q Consensus 195 ~k~~ig~lPd~flrv~~~~~~~~~~~~~~~~d~q~~~~l~~~~~~~~~~~~~~~~~~~g~lsiti~~~~~~~~~~~~~~~ 274 (349)
+ +-|++ ++...++++ |.+.+|.++++.+++..||.|++..++
T Consensus 338 ----i-~~p~~-----------------------------~~~~~~~~v----p~~iRp~~q~~~~evl~wgLrn~k~~~ 379 (1105)
T KOG1326|consen 338 ----I-PQPPP-----------------------------QREIIFSLV----PKKIRPKTQIGKAELLMWGLRNPKKSG 379 (1105)
T ss_pred ----C-CCCCc-----------------------------ccccceecc----ccCCCcceeeeeeehhhhhhccccccc
Confidence 0 00111 222233333 568999999999999999999998554
Q ss_pred EEe
Q psy3181 275 IVS 277 (349)
Q Consensus 275 ~~~ 277 (349)
+.+
T Consensus 380 m~~ 382 (1105)
T KOG1326|consen 380 MAS 382 (1105)
T ss_pred ccc
Confidence 433
No 120
>KOG1013|consensus
Probab=98.14 E-value=2.6e-06 Score=82.52 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=86.4
Q ss_pred cccCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccC---CeE
Q psy3181 38 ASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTS 109 (349)
Q Consensus 38 ~s~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~ 109 (349)
.|+.+......|.|+++++..|..+|.+|-+||||+..+.. -+.+|.+.++ +.+|+||+.|.|.+.+. ...
T Consensus 224 isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 224 ISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred eeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccchhcce
Confidence 56788889999999999999999999999999999998751 2567777665 56999999999998776 478
Q ss_pred EEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEE
Q psy3181 110 IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFP 148 (349)
Q Consensus 110 L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~ 148 (349)
+.|.|||.+..+..+++|.+...+- ..++....|+.
T Consensus 303 v~lsvgd~~~G~s~d~~GG~~~g~~---rr~~v~~h~gr 338 (362)
T KOG1013|consen 303 VALSVGDYDIGKSNDSIGGSMLGGY---RRGEVHKHWGR 338 (362)
T ss_pred EEEeecccCCCcCccCCCccccccc---ccchhhcCccc
Confidence 9999999998878899997655433 34555556654
No 121
>KOG1013|consensus
Probab=98.02 E-value=1.3e-06 Score=84.65 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=111.2
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEe--ccC--CeEE
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLL--PQG--VTSI 110 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V--~~~--~~~L 110 (349)
+.+......+.++|.+|++|+.++.+|..|||++..++. .+.+|++..+ +.||.|+|+..... .+. ...+
T Consensus 86 ~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~ 164 (362)
T KOG1013|consen 86 LLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVL 164 (362)
T ss_pred hhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhh
Confidence 677788889999999999999999999999999998862 3577888766 66999999876652 222 4678
Q ss_pred EEEEeecCCCCCCceeEEEEEeCCcccc-CCcceeeEEEccCC------CCCCcceEEEEEEEEEEccceeeeeeecCce
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIPSSVM-KGETHEDWFPLSGK------QGEDKEGMINLVLSYTVSFFFFLLLLENSIS 183 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~e~l~-~g~~~~~W~~L~~k------~g~~~~GeI~L~L~~~p~~~~~~~~~~~~~~ 183 (349)
++.|.|++.+..++++|+..+++..+-. .......|+.-... ......|.|.+++.|......+...|-..
T Consensus 165 Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc-- 242 (362)
T KOG1013|consen 165 RKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRC-- 242 (362)
T ss_pred heeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEe--
Confidence 8999999999999999999988884321 22223334332111 11246799999998854333222222111
Q ss_pred eeeeeccccchhhhccCCCCCccccCCCCCCCcC
Q psy3181 184 YLEITKHPLYAAKVFLGALPSDFLRPNNSPLSNH 217 (349)
Q Consensus 184 y~~~t~~~~~~~k~~ig~lPd~flrv~~~~~~~~ 217 (349)
.+ ...+...+..|+|+.+..+|+..-
T Consensus 243 -----~~---l~ssDsng~sDpyvS~~l~pdv~~ 268 (362)
T KOG1013|consen 243 -----SH---LASSDSNGYSDPYVSQRLSPDVGK 268 (362)
T ss_pred -----ee---eeccccCCCCCccceeecCCCcch
Confidence 11 111223345677777776654433
No 122
>KOG0905|consensus
Probab=98.02 E-value=4.8e-06 Score=91.01 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=83.9
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEE-eccC---CeEEEEEEe
Q psy3181 45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCL-LPQG---VTSIYLEIY 115 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~-V~~~---~~~L~I~V~ 115 (349)
..|+|.|-|.-|++|+-.......||||+.++. ..+.||++++++ .||.|||..... .+.+ .+.|.++||
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt-~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKT-RNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccccc-CCCchhhheeecCCchhhhhhheeeeeee
Confidence 467899999999999766666779999999985 246789998875 599999998877 3332 488999999
Q ss_pred ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccC
Q psy3181 116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151 (349)
Q Consensus 116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~ 151 (349)
..+.+..+.++|.+.++|.+. ........||.|..
T Consensus 1601 s~~~~~en~~lg~v~i~L~~~-~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1601 SNGGLLENVFLGGVNIPLLKV-DLLKESVGWYNLGA 1635 (1639)
T ss_pred cccceeeeeeeeeeecchhhc-chhhhhcceeeccc
Confidence 999999999999999999954 33332458999963
No 123
>KOG1326|consensus
Probab=97.97 E-value=5.1e-06 Score=89.62 Aligned_cols=93 Identities=22% Similarity=0.163 Sum_probs=78.2
Q ss_pred CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEE--EEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCCC
Q psy3181 44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVY--ETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECSF 120 (349)
Q Consensus 44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~--kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~~ 120 (349)
+.....+|.+++|.+|.+.|.+|.+|||+++.+|+... ++..+.+ +.||+|++.|.+....+ ...+.+.|||+|.+
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 34455679999999999999999999999999998764 4445555 56999999999886544 67899999999999
Q ss_pred CCCceeEEEEEeCCccc
Q psy3181 121 TMDELIAWAKIPIPSSV 137 (349)
Q Consensus 121 skdd~LG~v~I~L~e~l 137 (349)
+.|+.+|+..++|+..+
T Consensus 689 ~~d~~iget~iDLEnR~ 705 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRW 705 (1105)
T ss_pred cccchhhceehhhhhcc
Confidence 99999999999998543
No 124
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=97.76 E-value=2.7e-05 Score=65.91 Aligned_cols=63 Identities=32% Similarity=0.527 Sum_probs=55.1
Q ss_pred ceEEEEeeeeeeccccCc----CceeEEecee-ec---------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181 253 GRLNITVVQILSIGRYLV----PTYQIVSGAY-YR---------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~----~~~~~~~~~~-~~---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 315 (349)
|.|.|||++|+..+++++ |||.|.+|.. ++ ||. |||..+..+ ...++++|+|+-.|+.|+.|
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~-WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPR-WNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCc-cCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 899999999999999875 9999999876 55 888 999988776 45789999999999999887
Q ss_pred c
Q psy3181 316 P 316 (349)
Q Consensus 316 ~ 316 (349)
-
T Consensus 81 G 81 (121)
T cd04016 81 A 81 (121)
T ss_pred E
Confidence 3
No 125
>PLN02964 phosphatidylserine decarboxylase
Probab=97.51 E-value=0.00017 Score=76.69 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=72.8
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEE-EECCeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeec
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRL-RVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDE 117 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V-~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~ 117 (349)
+....-.|...+++++|+ ++. .|||..+ .+|.+.++|.+.++ +.||+||+...|.+.+. ....++.|||+
T Consensus 47 ~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 47 VSAEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred eecccccCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceEEEEEEec
Confidence 455667788999999987 333 5887665 78899999999876 56999999999998654 45579999999
Q ss_pred CCCCCCceeEEEEEeCCc
Q psy3181 118 CSFTMDELIAWAKIPIPS 135 (349)
Q Consensus 118 d~~skdd~LG~v~I~L~e 135 (349)
+++++++++|.++++|.+
T Consensus 119 ~~~s~n~lv~~~e~~~t~ 136 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFD 136 (644)
T ss_pred CCCCHHHhhhheeecHhh
Confidence 999999999999998874
No 126
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.46 E-value=0.00029 Score=60.41 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=73.6
Q ss_pred EEEEEEEeecCCCCC---------C----CCCCCcEEEEEEC----CeEEEEEecCCCCCCCccceEEEEEec-------
Q psy3181 49 LNITVVQAKLVKNYG---------L----VTKMDPYVRLRVG----HCVYETHTDPSGGKFPRWNKEVFCLLP------- 104 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d---------~----~G~sDPYV~V~lg----~~~~kTkvvk~~~~nP~WnEtF~F~V~------- 104 (349)
|.|.|++|.+|+... + .-..++||++.+. ++..+|+++.+ +-.|+|+-.+.|..+
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 467888888885321 1 1125789999853 56788999887 459999999999854
Q ss_pred -c--------CCeEEEEEEeecCCC----------CCCceeEEEEEeCCccccCCcceeeEEEc
Q psy3181 105 -Q--------GVTSIYLEIYDECSF----------TMDELIAWAKIPIPSSVMKGETHEDWFPL 149 (349)
Q Consensus 105 -~--------~~~~L~I~V~D~d~~----------skdd~LG~v~I~L~e~l~~g~~~~~W~~L 149 (349)
. +...+.++||....- .+|-.||.+.||+.+++........||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 136789999986542 23558999999999888877667899975
No 127
>KOG1011|consensus
Probab=97.42 E-value=0.00045 Score=72.21 Aligned_cols=107 Identities=20% Similarity=0.306 Sum_probs=81.5
Q ss_pred CCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEEEecCCCCCCCccceEEEEEeccC----CeEEE
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------CVYETHTDPSGGKFPRWNKEVFCLLPQG----VTSIY 111 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------~~~kTkvvk~~~~nP~WnEtF~F~V~~~----~~~L~ 111 (349)
+.-..+++|+|+.|.+|+.... |..-|||.|.+-+ +++.|++..+ +-.|.+||+|.|-+..+ .-.|.
T Consensus 1121 gtgehkvtvkvvaandlkwqts-gmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~YEL~ 1198 (1283)
T KOG1011|consen 1121 GTGEHKVTVKVVAANDLKWQTS-GMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEHYELQ 1198 (1283)
T ss_pred CCCcceEEEEEEecccccchhc-cccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCceEEEE
Confidence 3344568888999999976543 6778999998632 4566777554 44899999999987543 47799
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
+.|.|+.-...|..+|.+.++|.++...|. ...|++|..+
T Consensus 1199 ~~VKDYCFAReDRvvGl~VlqL~~va~kGS-~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1199 FCVKDYCFAREDRVVGLAVLQLRSVADKGS-CACWVPLGRR 1238 (1283)
T ss_pred EeehhheeecccceeeeeeeehhhHhhcCc-eeEeeecccc
Confidence 999998855667799999999997666665 7789999643
No 128
>KOG2060|consensus
Probab=97.28 E-value=0.00017 Score=71.09 Aligned_cols=109 Identities=13% Similarity=0.166 Sum_probs=83.9
Q ss_pred CCcceEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEe-
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGL-VTKMDPYVRLRVGH-----CVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIY- 115 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~-~G~sDPYV~V~lg~-----~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~- 115 (349)
-..+|.|.|.|++|++|-.+-. -..++|||+|++.. .+.+|+...+++ .|.+.+...|.-.+....|.++||
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~-~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTL-DPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccC-chhhhhhhhhccCCCccEEEEEEec
Confidence 4567899999999999954432 34789999998742 256788877744 777777788888788899999999
Q ss_pred ecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 116 DECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 116 D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
|..++-++.|+|.+.+-++++-......-.||+|.+.
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 5667777889999999999654444356789999764
No 129
>KOG1265|consensus
Probab=96.79 E-value=0.0032 Score=68.01 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=77.7
Q ss_pred CCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEEEEEecCCCCCCCccceE-EEEE--eccCCeEEE
Q psy3181 42 IQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH-------CVYETHTDPSGGKFPRWNKE-VFCL--LPQGVTSIY 111 (349)
Q Consensus 42 ~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~-------~~~kTkvvk~~~~nP~WnEt-F~F~--V~~~~~~L~ 111 (349)
...-.+++.|+|++|.-|.+++. ..||.|.+.+ ..++|+++..++.||+|+|. |.|. +-+.-..|+
T Consensus 698 dgvIA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lR 773 (1189)
T KOG1265|consen 698 DGVIAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLR 773 (1189)
T ss_pred cceEEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhee
Confidence 34455779999999999987765 3899998742 46789999988999999975 7786 334458899
Q ss_pred EEEeecCCCCCCceeEEEEEeCCccccCCcceeeEEEccCC
Q psy3181 112 LEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGK 152 (349)
Q Consensus 112 I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k 152 (349)
|.||+++ ..+||+=.+|++ .+..|. +.+.|...
T Consensus 774 iavyeEg----gK~ig~RIlpvd-~l~~GY---rhv~LRse 806 (1189)
T KOG1265|consen 774 IAVYEEG----GKFIGQRILPVD-GLNAGY---RHVCLRSE 806 (1189)
T ss_pred eeeeccC----Cceeeeeccchh-cccCcc---eeEEecCC
Confidence 9999987 579999999999 677787 45566543
No 130
>KOG1327|consensus
Probab=96.61 E-value=0.004 Score=64.45 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=63.7
Q ss_pred EEeecCCCCCCCCCCCcEEEEEE--C----CeEEEEEecCCCCCCCccceEEEEEe-----ccCCeEEEEEEeecCCCCC
Q psy3181 54 VQAKLVKNYGLVTKMDPYVRLRV--G----HCVYETHTDPSGGKFPRWNKEVFCLL-----PQGVTSIYLEIYDECSFTM 122 (349)
Q Consensus 54 v~ArnL~~~d~~G~sDPYV~V~l--g----~~~~kTkvvk~~~~nP~WnEtF~F~V-----~~~~~~L~I~V~D~d~~sk 122 (349)
++|++|..+|.++++|||..+.- + ...++|.++++ +++|.|.+ |.+.. .+....+.+.+||++..++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 45788899999999999999853 2 23578888876 56999954 44442 2346889999999999999
Q ss_pred CceeEEEEEeCCcc
Q psy3181 123 DELIAWAKIPIPSS 136 (349)
Q Consensus 123 dd~LG~v~I~L~e~ 136 (349)
++++|.+..++.+.
T Consensus 221 ~~~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 221 HDLIGKFQTTLSEL 234 (529)
T ss_pred cCceeEecccHHHh
Confidence 99999999998854
No 131
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.55 E-value=0.031 Score=55.41 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=88.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEecc--------CCeEEEEEEeecC-C
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQ--------GVTSIYLEIYDEC-S 119 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~--------~~~~L~I~V~D~d-~ 119 (349)
+.|.|++|+|++.... -.-.+..++++....|-.+.. +..|.||..+.+++.. ....|++++|-.| .
T Consensus 2 ivl~i~egr~F~~~~~---~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR---HPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCCC---ccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 5789999999977622 345667789999999987766 4499999999998642 2588999999988 5
Q ss_pred CCCCceeEEEEEeCCcc-c-cCC--cceeeEEEccCC--CCCCcceEEEEEEEEEEc
Q psy3181 120 FTMDELIAWAKIPIPSS-V-MKG--ETHEDWFPLSGK--QGEDKEGMINLVLSYTVS 170 (349)
Q Consensus 120 ~skdd~LG~v~I~L~e~-l-~~g--~~~~~W~~L~~k--~g~~~~GeI~L~L~~~p~ 170 (349)
-+..+.+|.+.++|... + ..+ .....||+|.+- .-.+.+-+|.+.+.....
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 56678999999999955 1 222 457789999764 233456788888887543
No 132
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.49 E-value=0.003 Score=50.90 Aligned_cols=94 Identities=10% Similarity=0.144 Sum_probs=62.0
Q ss_pred EEEEEEeecCCCCCCCCC-CCcEEEE--EECCe-EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecCCCCC
Q psy3181 50 NITVVQAKLVKNYGLVTK-MDPYVRL--RVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDECSFTM 122 (349)
Q Consensus 50 ~V~Iv~ArnL~~~d~~G~-sDPYV~V--~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d~~sk 122 (349)
-++++.+++|.-....|. ..-|++- ++.+. .++|.+ +++..||+|.|+|.|.+.-. +-.|.+.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~-rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSA-KEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchh-hcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999865544332 2234442 34443 456665 45567999999999997532 5778899998 3556
Q ss_pred CceeEEEEEeCCccccCCcceeeEEE
Q psy3181 123 DELIAWAKIPIPSSVMKGETHEDWFP 148 (349)
Q Consensus 123 dd~LG~v~I~L~e~l~~g~~~~~W~~ 148 (349)
.+.||.+.+.+.+ .... ..+.|.+
T Consensus 79 Ke~iG~~sL~l~s-~gee-E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRT-LSTQ-ETDHWLE 102 (103)
T ss_pred cceeeEEEeeccc-CCHH-Hhhhhhc
Confidence 7899999999984 3222 2445643
No 133
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.20 E-value=0.066 Score=47.44 Aligned_cols=128 Identities=14% Similarity=0.128 Sum_probs=88.2
Q ss_pred CCcceEEEEEEEEeecCCCCCCC--CCCCc--EEEEEECCeEEEEEecCCCCCCCccceEEEEEeccC------------
Q psy3181 43 QNPVGRLNITVVQAKLVKNYGLV--TKMDP--YVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG------------ 106 (349)
Q Consensus 43 ~~~~G~L~V~Iv~ArnL~~~d~~--G~sDP--YV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~------------ 106 (349)
.+..--|+|+|..|+-+-..-.. +..+. .+-+.+++++++|+.+.- +.+|.|+|.|-|++...
T Consensus 5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhh
Confidence 45556799999998764321110 33333 444567899999999876 55999999999997533
Q ss_pred --CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcc-eeeEEEccCCCC--CCcceEEEEEEEEEEcc
Q psy3181 107 --VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGET-HEDWFPLSGKQG--EDKEGMINLVLSYTVSF 171 (349)
Q Consensus 107 --~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~-~~~W~~L~~k~g--~~~~GeI~L~L~~~p~~ 171 (349)
.+.+++.|.-.|..+...++|...++-..++..+.. ...-..|.+... +-..|-|.|++.+.|..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 266888888888777678999999988877765542 122344544322 23679999999987754
No 134
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=96.17 E-value=0.0081 Score=51.53 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCcceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeecccccc
Q psy3181 250 NPVGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSA 311 (349)
Q Consensus 250 ~~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 311 (349)
+.-|+|.|+|+++.-...... |||.+..|.. |+ ||. |||.+...+ .+.+.++|+|...|+.
T Consensus 12 ~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~-Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 12 SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPK-WNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCc-cCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 466999999999997765433 9999999875 65 888 999766544 4578999999999988
Q ss_pred cCcc
Q psy3181 312 NKPI 315 (349)
Q Consensus 312 ~~~~ 315 (349)
++.|
T Consensus 91 d~~l 94 (136)
T cd08375 91 DDFL 94 (136)
T ss_pred CCee
Confidence 8755
No 135
>KOG3837|consensus
Probab=96.13 E-value=0.005 Score=61.77 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=85.5
Q ss_pred CcceEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEEEEEecCCCCCCCccceEEEEEeccC------------
Q psy3181 44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVG-----HCVYETHTDPSGGKFPRWNKEVFCLLPQG------------ 106 (349)
Q Consensus 44 ~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg-----~~~~kTkvvk~~~~nP~WnEtF~F~V~~~------------ 106 (349)
.....|.+.|+++.+++....---.|-|+++++. ..+.+|.+++.+ .+|.|+|.|.+.+..+
T Consensus 364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t-~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVT-PSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCC-CCCCcccceeeeccCCCcccHHHHHHHH
Confidence 3444566777777776544322234678888763 346678888874 4999999999987542
Q ss_pred CeEEEEEEeecCCCC-CCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181 107 VTSIYLEIYDECSFT-MDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168 (349)
Q Consensus 107 ~~~L~I~V~D~d~~s-kdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~ 168 (349)
...++|++|.+..+- +|.++|.+.+.|. .+...-.....++|... .....|.|.+++...
T Consensus 443 r~g~kfeifhkggf~rSdkl~gt~nikle-~Len~cei~e~~~l~DG-RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLE-ILENMCEICEYLPLKDG-RKAVGGKLEVKVRIR 503 (523)
T ss_pred hcCeeEEEeeccccccccceeceeeeeeh-hhhcccchhhceecccc-ccccCCeeEEEEEEe
Confidence 256899999987654 5789999999999 56655445567777532 245679999988863
No 136
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.11 E-value=0.3 Score=41.51 Aligned_cols=122 Identities=9% Similarity=0.082 Sum_probs=79.6
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---EEEEEecCCCCCCCccceEEEEEec----c-----CCeEEEE
Q psy3181 45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC---VYETHTDPSGGKFPRWNKEVFCLLP----Q-----GVTSIYL 112 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~---~~kTkvvk~~~~nP~WnEtF~F~V~----~-----~~~~L~I 112 (349)
..-.+.|+|.+..+++.. ...-|++...+.. ...|.........-.|||.|.+.+. . ....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 345678899999988772 2345666666654 2445443333337899999988742 1 1366889
Q ss_pred EEeecCCCCCCceeEEEEEeCCccccCC-cceeeEEEccCCCCCCcceEEEEEEEEEEccc
Q psy3181 113 EIYDECSFTMDELIAWAKIPIPSSVMKG-ETHEDWFPLSGKQGEDKEGMINLVLSYTVSFF 172 (349)
Q Consensus 113 ~V~D~d~~skdd~LG~v~I~L~e~l~~g-~~~~~W~~L~~k~g~~~~GeI~L~L~~~p~~~ 172 (349)
.|+....-++...+|.+.|+|.+-.... .....-++|... ......|.|.+.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECcc
Confidence 9998753333368999999999654432 334555666543 345678999888876543
No 137
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=95.43 E-value=0.02 Score=48.81 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=51.4
Q ss_pred CCCcceEEEEeeeeeeccccCc----CceeEEecee-ec--------CChhhHhhhhhh---h--heeeeeeeeeccccc
Q psy3181 249 QNPVGRLNITVVQILSIGRYLV----PTYQIVSGAY-YR--------SSRSEQEVCSCK---F--LALIKLDILDTYLFS 310 (349)
Q Consensus 249 ~~~~g~lsiti~~~~~~~~~~~----~~~~~~~~~~-~~--------~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~ 310 (349)
.+..|+|.|+|++++-+..... ||++|..|.. |+ ||. |||.+.-. + ...+.++|+|...|+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPv-WNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPR-WNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCc-CCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3566999999999997654333 9999998654 54 899 99966542 2 568899999999998
Q ss_pred ccCccc
Q psy3181 311 ANKPIP 316 (349)
Q Consensus 311 ~~~~~~ 316 (349)
.++.|-
T Consensus 103 ~dd~IG 108 (127)
T cd04032 103 DDDLLG 108 (127)
T ss_pred CCCeeE
Confidence 888664
No 138
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.11 E-value=0.17 Score=44.94 Aligned_cols=85 Identities=22% Similarity=0.242 Sum_probs=58.3
Q ss_pred ceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEe
Q psy3181 46 VGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV----YETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIY 115 (349)
Q Consensus 46 ~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~----~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~ 115 (349)
...++|+|+.+.++.-.+ .+|-||.+.+ |++. ..|+.+. ..++.|||.+.|.+.- .+..|.|+||
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEE
Confidence 346899999999887543 3578888754 4432 2344333 2489999999998642 2688999999
Q ss_pred ecCCCC----CCceeEEEEEeCCc
Q psy3181 116 DECSFT----MDELIAWAKIPIPS 135 (349)
Q Consensus 116 D~d~~s----kdd~LG~v~I~L~e 135 (349)
+..... ....+|.+.++|-+
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEEC
Confidence 965321 12468998888773
No 139
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=95.09 E-value=0.031 Score=48.72 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=48.3
Q ss_pred ceEEEEeeeeeeccccCc----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181 253 GRLNITVVQILSIGRYLV----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 315 (349)
|.|.|+|+++.-...... ||+.+..|.. ++ ||. |||.....+ ...+.++|+|...|+.++.|
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~-WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPV-WNEELTLSVPNPMAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCe-ecccEEEEecCCCCEEEEEEEECCCCCCCCEE
Confidence 899999999985543333 9999999875 55 788 999655544 45789999999999988765
No 140
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.83 E-value=0.17 Score=45.37 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=55.7
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEee
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV----YETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYD 116 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~----~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D 116 (349)
..++|+|+.+.++...+ ...+-||.+.+ |++. ..|+...- ..++.|||.+.|.+.- .+..|.|+||+
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 46899999999987622 23555666643 4432 34544332 2479999999998642 26889999999
Q ss_pred cCCCC----------------CCceeEEEEEeCC
Q psy3181 117 ECSFT----------------MDELIAWAKIPIP 134 (349)
Q Consensus 117 ~d~~s----------------kdd~LG~v~I~L~ 134 (349)
..... .+..||.+.++|-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LF 118 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVF 118 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEE
Confidence 65322 1356777777765
No 141
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.72 E-value=0.05 Score=45.47 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=47.7
Q ss_pred ceEEEEeeeeeeccccCc-----CceeEEecee--ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCc
Q psy3181 253 GRLNITVVQILSIGRYLV-----PTYQIVSGAY--YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKP 314 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~-----~~~~~~~~~~--~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 314 (349)
|.|.|+|+++.-.++... ||+.+.++-. ++ ||. ||+.+...+ ...++++|+|...|+.++.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~-Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPV-WDEVLYVPVTSPNQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCc-cCceEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence 789999999987666533 9999998532 33 788 999876644 4678999999988887765
Q ss_pred c
Q psy3181 315 I 315 (349)
Q Consensus 315 ~ 315 (349)
|
T Consensus 80 I 80 (120)
T cd04045 80 L 80 (120)
T ss_pred e
Confidence 4
No 142
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.68 E-value=0.38 Score=39.09 Aligned_cols=83 Identities=11% Similarity=0.087 Sum_probs=57.9
Q ss_pred CCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeE
Q psy3181 68 MDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146 (349)
Q Consensus 68 sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W 146 (349)
++-.+++++.+. ..+|.-. ...+..|++.|.|.+.. +..|+|.||-.|- ..+.|...+.|++ ...+ .-
T Consensus 9 ~eV~avLklDn~~VgqT~Wk--~~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd-~~~~----~~ 77 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK--PKSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLED-ERHE----VQ 77 (98)
T ss_pred cceEEEEEEcCeEEeecccc--ccccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhh-hccc----ce
Confidence 567888888874 4455542 23489999999999944 5899999998874 3477888888886 2212 22
Q ss_pred EEccCCCCCCcceEEEEEEEE
Q psy3181 147 FPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 147 ~~L~~k~g~~~~GeI~L~L~~ 167 (349)
.+|. ..|.+...++|
T Consensus 78 ~~le------pqg~l~~ev~f 92 (98)
T cd08687 78 LDME------PQLCLVAELTF 92 (98)
T ss_pred eccc------cccEEEEEEEe
Confidence 2333 35888888887
No 143
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=94.63 E-value=0.055 Score=44.49 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=47.3
Q ss_pred ceEEEEeeeeeeccc--------cCc-CceeEEecee-ec--------CChhhHhhhhhhhh-----eeeeeeeeecccc
Q psy3181 253 GRLNITVVQILSIGR--------YLV-PTYQIVSGAY-YR--------SSRSEQEVCSCKFL-----ALIKLDILDTYLF 309 (349)
Q Consensus 253 g~lsiti~~~~~~~~--------~~~-~~~~~~~~~~-~~--------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 309 (349)
|.|.|||++|.-... +.+ ||+.|..|.. |+ ||. |||.+...+. ..+.++|+|.-.|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPv-Wne~f~f~v~~~~~~~~L~~~V~D~d~~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPV-FNERLAFEVYPHEKNFDIQFKVLDKDKF 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCc-ccceEEEEEeCccCCCEEEEEEEECCCC
Confidence 889999999987643 224 9999998744 55 899 9998776652 1467889998888
Q ss_pred cccCccc
Q psy3181 310 SANKPIP 316 (349)
Q Consensus 310 ~~~~~~~ 316 (349)
+.++.|-
T Consensus 80 ~~dd~IG 86 (108)
T cd04039 80 SFNDYVA 86 (108)
T ss_pred CCCcceE
Confidence 8777653
No 144
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=94.48 E-value=0.052 Score=45.08 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=46.1
Q ss_pred ceEEEEeeeeeeccccCc-----CceeEEecee-ec---------CChhhHhhhhhhh-------heeeeeeeeeccccc
Q psy3181 253 GRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR---------SSRSEQEVCSCKF-------LALIKLDILDTYLFS 310 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 310 (349)
|+|.|+|+++.-.++... ||+.+.++.. ++ ||. ||+.....+ ...+.++|+|...|.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~-Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPE-WNEKFKFTVEYPGWGGDTKLILRIMDKDNFS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCc-ccceEEEEecCcccCCCCEEEEEEEECccCC
Confidence 789999999997766443 9999988654 33 777 999554433 246889999999888
Q ss_pred ccCcc
Q psy3181 311 ANKPI 315 (349)
Q Consensus 311 ~~~~~ 315 (349)
.++.|
T Consensus 80 ~d~~i 84 (124)
T cd04049 80 DDDFI 84 (124)
T ss_pred CCCeE
Confidence 76654
No 145
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=94.36 E-value=0.057 Score=45.36 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=48.6
Q ss_pred ceEEEEeeeeeeccccCc----CceeEEecee--ec--------CChhhHhhhhhhh--heeeeeeeeecccccccCccc
Q psy3181 253 GRLNITVVQILSIGRYLV----PTYQIVSGAY--YR--------SSRSEQEVCSCKF--LALIKLDILDTYLFSANKPIP 316 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~----~~~~~~~~~~--~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 316 (349)
-+|.|+|+++.+.+.... ||+++.+|.. ++ ||. |||.+...+ -..+.++|+|...++.++.|-
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~-Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG 80 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPK-WNEHFTVLVTPQSTLEFKVWSHHTLKADVLLG 80 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCc-cccEEEEEeCCCCEEEEEEEeCCCCCCCcEEE
Confidence 369999999988766553 9999988754 33 888 999666554 567889999999988877653
No 146
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.17 E-value=0.3 Score=42.57 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=57.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EEEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEee
Q psy3181 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHC----VYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYD 116 (349)
Q Consensus 47 G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~----~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D 116 (349)
..++|++....++...+ ....+-|+.+.+ |++ ...|+.... ..++.|||.+.|.+.- .+..|.|+||+
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 45778888887775521 123455666643 443 223333322 2489999999998642 26889999999
Q ss_pred cCCCC--CCceeEEEEEeCCc
Q psy3181 117 ECSFT--MDELIAWAKIPIPS 135 (349)
Q Consensus 117 ~d~~s--kdd~LG~v~I~L~e 135 (349)
.+..+ .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EecCCCCcceEEEEEeEEeEc
Confidence 76544 46789999999873
No 147
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=93.81 E-value=0.098 Score=42.82 Aligned_cols=62 Identities=8% Similarity=0.108 Sum_probs=45.4
Q ss_pred ceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181 253 GRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 315 (349)
|.|.|+|+++.-...-.+ ||+.|..+.. ++ ||. |++.....+ -..+.++|+|...|..++.|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~-W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPE-WNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCc-cCcEEEEEecCcCCEEEEEEEECCCCCCCcee
Confidence 789999999986654332 9999988754 44 788 998554333 45688889998888776644
No 148
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.71 E-value=0.3 Score=43.55 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=61.7
Q ss_pred cceEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEEEecC--C-CCCCCccceEEEEEecc----CCeEEE
Q psy3181 45 PVGRLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV----YETHTDP--S-GGKFPRWNKEVFCLLPQ----GVTSIY 111 (349)
Q Consensus 45 ~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~----~kTkvvk--~-~~~nP~WnEtF~F~V~~----~~~~L~ 111 (349)
....+.|+|..+.+++........|-|+.+.+ |++. ..|+... + -...+.|||.+.|.+.- .+..|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 34568899999999987765556778888754 4443 2343211 1 12257799999998642 268899
Q ss_pred EEEeecCCCC---------CCceeEEEEEeCCc
Q psy3181 112 LEIYDECSFT---------MDELIAWAKIPIPS 135 (349)
Q Consensus 112 I~V~D~d~~s---------kdd~LG~v~I~L~e 135 (349)
|+||+....+ .+..||.+.++|-+
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9999976443 34688888888763
No 149
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=93.54 E-value=0.098 Score=42.91 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=43.8
Q ss_pred ceEEEEeeeeeeccccC---c--CceeEEecee-ec---------CChhhHhhhhhhh----heeeeeeeeecccccccC
Q psy3181 253 GRLNITVVQILSIGRYL---V--PTYQIVSGAY-YR---------SSRSEQEVCSCKF----LALIKLDILDTYLFSANK 313 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~---~--~~~~~~~~~~-~~---------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 313 (349)
|.|.|+|+++.-..+.. . ||+.+.+|.. ++ ||. |||...-.+ -..+.++|+|...++ ++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~-Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPE-WDEELRFEITEDKKPILKVAVFDDDKRK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCc-cCceEEEEecCCCCCEEEEEEEeCCCCC-Cc
Confidence 78999999999665433 2 9999998753 33 787 998755444 346889999987765 54
Q ss_pred cc
Q psy3181 314 PI 315 (349)
Q Consensus 314 ~~ 315 (349)
.|
T Consensus 79 ~i 80 (118)
T cd08681 79 LI 80 (118)
T ss_pred ce
Confidence 43
No 150
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=93.51 E-value=0.083 Score=43.44 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=47.9
Q ss_pred ceEEEEeeeeeeccccC----c--CceeEEece--e-ec--------CChhhHhhhhhhh---heeeeeeeeeccccccc
Q psy3181 253 GRLNITVVQILSIGRYL----V--PTYQIVSGA--Y-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSAN 312 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~----~--~~~~~~~~~--~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 312 (349)
|+|.|+|+++.-..+.+ . |||.+..+. . ++ ||. |||.....+ -..+.++|+|...|..+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~-Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPV-WNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCc-ceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 89999999999766432 2 999999976 2 55 888 999875543 55788999999888777
Q ss_pred Ccc
Q psy3181 313 KPI 315 (349)
Q Consensus 313 ~~~ 315 (349)
+.|
T Consensus 81 ~~i 83 (124)
T cd04044 81 KLI 83 (124)
T ss_pred cee
Confidence 665
No 151
>KOG1452|consensus
Probab=93.38 E-value=0.15 Score=49.80 Aligned_cols=120 Identities=11% Similarity=0.005 Sum_probs=74.3
Q ss_pred CCCCcceEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeec
Q psy3181 41 LIQNPVGRLNITVVQAKLVKNYGL--VTKMDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDE 117 (349)
Q Consensus 41 ~~~~~~G~L~V~Iv~ArnL~~~d~--~G~sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~ 117 (349)
......|.|.+++..+++|+.... .-+-+-||++.+..+ ..+|.+.. ....-.|.|+|...+-.. +.+.+-||.|
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs-~~~~f~w~e~F~~Dvv~~-~vl~~lvySW 122 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRS-SGPGFAWAEDFKHDVVNI-EVLHYLVYSW 122 (442)
T ss_pred eeecccceEEEEEecccccccChhccCceeeeeeeeeecccCcccccccc-CCCCccchhhceeecccc-eeeeEEEeec
Confidence 345668999999999999965433 456788999998753 55666533 344678999999887543 6778888888
Q ss_pred CCCCCCceeEEEEEeCCccccCCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181 118 CSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYT 168 (349)
Q Consensus 118 d~~skdd~LG~v~I~L~e~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~ 168 (349)
+.-.++++.-..-+.+.-+...++ +.-+.|.-. .+|.+-+.+.++
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqsp--d~~~Al~le----Prgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSP--DRVVALYLE----PRGQPPLRLPLA 167 (442)
T ss_pred CchhhccccccchhhhhhhhhcCC--cceeeeecc----cCCCCceecccC
Confidence 865556543333333332222232 222233211 246666666653
No 152
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.36 E-value=0.29 Score=43.40 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCCCcEEEEEE--CCe----EEEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEeecCCCCCCceeEEEEEeCCc
Q psy3181 66 TKMDPYVRLRV--GHC----VYETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYDECSFTMDELIAWAKIPIPS 135 (349)
Q Consensus 66 G~sDPYV~V~l--g~~----~~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D~d~~skdd~LG~v~I~L~e 135 (349)
..+|-||.+.+ ++. ...|+...- +..+.|||...|++.- .+..|.|+|||.+..++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 34667777754 333 234444333 3378899999998753 268899999998765567789999999773
Q ss_pred cccCCcceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181 136 SVMKGETHEDWFPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 136 ~l~~g~~~~~W~~L~~k~g~~~~GeI~L~L~~ 167 (349)
. ++. | ..|...+.++.
T Consensus 107 -~-~g~-------L-------r~G~~~l~lw~ 122 (159)
T cd08397 107 -K-DGT-------L-------RRGRQKLRVWP 122 (159)
T ss_pred -C-CCc-------E-------ecCCEEEEEEe
Confidence 2 221 2 24788887774
No 153
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=93.14 E-value=0.13 Score=42.53 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=44.7
Q ss_pred eEEEEeeeeeeccccC---c--CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeecccccccCcc
Q psy3181 254 RLNITVVQILSIGRYL---V--PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 254 ~lsiti~~~~~~~~~~---~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 315 (349)
||.|+|+++.-..... . ||+.|..|.. ++ ||. |||.+...+ ...+.++|+|...|..++.|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPR-WNEVFEFELMEGADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCc-cCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEe
Confidence 6899999998553322 2 9999998754 44 798 999776554 34588889998888776654
No 154
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=92.26 E-value=0.15 Score=42.58 Aligned_cols=71 Identities=23% Similarity=0.233 Sum_probs=47.8
Q ss_pred EEEEeeeeeecccc---Cc--CceeEEecee-ec--------CChhhHhhhhhhh---------heeeeeeeeecccccc
Q psy3181 255 LNITVVQILSIGRY---LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF---------LALIKLDILDTYLFSA 311 (349)
Q Consensus 255 lsiti~~~~~~~~~---~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 311 (349)
+.|+|++|.-.... |. ||+.+..|.. ++ ||+ |||.+.-.+ ...+.+.|+|...|+.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~-Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPV-WKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCE-eCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 36788887755432 22 9999998765 55 999 999654433 3467899999998988
Q ss_pred cCccchhhhhhhhhhhhh
Q psy3181 312 NKPIPLLKKFKIRTRSLF 329 (349)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~ 329 (349)
++.|- ++.+...++.
T Consensus 80 d~~iG---~~~i~l~~l~ 94 (126)
T cd08682 80 DKFLG---QVSIPLNDLD 94 (126)
T ss_pred CceeE---EEEEEHHHhh
Confidence 77543 3344444443
No 155
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=92.14 E-value=0.22 Score=41.25 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=45.8
Q ss_pred eEEEEeeeeeeccccCc-----CceeEEece-e-ec---------CChhhHhhhhhhh--------heeeeeeeeecccc
Q psy3181 254 RLNITVVQILSIGRYLV-----PTYQIVSGA-Y-YR---------SSRSEQEVCSCKF--------LALIKLDILDTYLF 309 (349)
Q Consensus 254 ~lsiti~~~~~~~~~~~-----~~~~~~~~~-~-~~---------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 309 (349)
.|.|+|+++...++... ||+.|.+|. . +. ||. |||.+.-.+ ...++++|+|...|
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~-Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPT-WNETLRFPLDERLLQQGRLALTIEVYCERPS 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCC-CCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence 37899999988876553 899999866 2 22 778 999554333 36899999999988
Q ss_pred cccCcc
Q psy3181 310 SANKPI 315 (349)
Q Consensus 310 ~~~~~~ 315 (349)
..++.|
T Consensus 80 ~~~~~l 85 (125)
T cd04051 80 LGDKLI 85 (125)
T ss_pred CCCCcE
Confidence 877765
No 156
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=91.56 E-value=0.33 Score=40.11 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=44.3
Q ss_pred ceEEEEeeeeeeccc-----cCc--CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeeccccccc
Q psy3181 253 GRLNITVVQILSIGR-----YLV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSAN 312 (349)
Q Consensus 253 g~lsiti~~~~~~~~-----~~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 312 (349)
|.|.|+|+++.-... .+. |||.+..|.. ++ ||. ||+.+...+ ...+.++|+|...++.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~-Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPK-WNYWCEFPIFSAQNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCc-cCCcEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 789999999974432 233 9999988755 55 787 999665444 45677888998888766
Q ss_pred Ccc
Q psy3181 313 KPI 315 (349)
Q Consensus 313 ~~~ 315 (349)
+.|
T Consensus 80 ~~l 82 (128)
T cd04024 80 DYL 82 (128)
T ss_pred Ccc
Confidence 543
No 157
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=91.07 E-value=0.34 Score=40.69 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=46.0
Q ss_pred cceEEEEeeeeeecccc-------------Cc--CceeEEecee-e-c--------CChhhHhhhhhhh--heeeeeeee
Q psy3181 252 VGRLNITVVQILSIGRY-------------LV--PTYQIVSGAY-Y-R--------SSRSEQEVCSCKF--LALIKLDIL 304 (349)
Q Consensus 252 ~g~lsiti~~~~~~~~~-------------~~--~~~~~~~~~~-~-~--------~~~~~~~~~~~~~--~~~~~~~~~ 304 (349)
.|.|.|+|++++-.... |. |||.+.+|.. + . ||+ |||-....+ -..+.+.|+
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~-Wne~f~~~v~~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPV-WNEEFTTEVHNGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCC-cceeEEEEcCCCCEEEEEEE
Confidence 49999999999766432 23 9999999854 2 1 788 999877665 456777788
Q ss_pred ecccccccCcc
Q psy3181 305 DTYLFSANKPI 315 (349)
Q Consensus 305 ~~~~~~~~~~~ 315 (349)
|...+..++.|
T Consensus 82 d~~~~~~~~~i 92 (132)
T cd04014 82 HDAAIGPDDFV 92 (132)
T ss_pred eCCCCCCCceE
Confidence 88777766543
No 158
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=90.64 E-value=0.4 Score=41.11 Aligned_cols=61 Identities=7% Similarity=-0.094 Sum_probs=45.8
Q ss_pred ceEEEEeeeeeeccccCc--CceeEEecee-ec-------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181 253 GRLNITVVQILSIGRYLV--PTYQIVSGAY-YR-------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~--~~~~~~~~~~-~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 315 (349)
|+|.|+|++|...+.-+- ||+.|..|-+ +. ||+ |||+..-.. -..+.++|.|.-.+ .|+.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~nP~-WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l 75 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGSQPC-WEQDFMFEINRLDLGLVIELWNKGLI-WDTLV 75 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCCCCc-eeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence 789999999998865443 9999999775 44 888 999876543 33488999997654 55544
No 159
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=90.61 E-value=0.39 Score=39.68 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=44.7
Q ss_pred eEEEEeeeeeeccccC---c--CceeEEecee--ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181 254 RLNITVVQILSIGRYL---V--PTYQIVSGAY--YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 254 ~lsiti~~~~~~~~~~---~--~~~~~~~~~~--~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 315 (349)
+|.|+|+++.-..... - ||+++..+.. |+ ||. |||.....+ -..+.++|+|...|+.++.|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~-Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPV-WDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCc-cceeEEEEecCCCCeEEEEEEeCCCCCCCcce
Confidence 4789999887554322 2 9999998642 55 888 998765543 45788999999999877755
No 160
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=90.18 E-value=0.48 Score=39.74 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=48.3
Q ss_pred ceEEEEeeeeeeccccCc--CceeEEecee--ec-------CChhhHhhhhhhh----heeeeeeeeecccccccCccc
Q psy3181 253 GRLNITVVQILSIGRYLV--PTYQIVSGAY--YR-------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKPIP 316 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~--~~~~~~~~~~--~~-------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 316 (349)
..|.|+|++|.-....+. |||.|.+|.. .+ ||. |||-.+-.. +..+.+.++|...|+.++.|-
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~~~~nP~-WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG 81 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVREGPNPV-WSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIA 81 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecCCCCCCc-cCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEE
Confidence 469999999988777665 9999998753 23 888 999766543 356788889998888887653
No 161
>KOG1329|consensus
Probab=90.02 E-value=0.79 Score=50.33 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=76.9
Q ss_pred CCcEEEEEECCe-EEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccCCcceeeE
Q psy3181 68 MDPYVRLRVGHC-VYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146 (349)
Q Consensus 68 sDPYV~V~lg~~-~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~~~~~W 146 (349)
.++|+.+.+... ..+|....+...+|.|.+.|..........+.+.+-+.+..+....+|.+.++.. .+..+.....|
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~-~~~~~~~~~~~ 216 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFL-QYCSGHRIGGW 216 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchh-hhhccccccce
Confidence 478888887653 3455555555468999999988887778899999999888776789999999999 56666778899
Q ss_pred EEccCCCCC--CcceEEEEEEEEEEccc
Q psy3181 147 FPLSGKQGE--DKEGMINLVLSYTVSFF 172 (349)
Q Consensus 147 ~~L~~k~g~--~~~GeI~L~L~~~p~~~ 172 (349)
+++...++. ...-.+.+.+.|.+...
T Consensus 217 ~~Il~~d~~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 217 FPILDNDGKPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred eeeeccCCccccCCcccceEEeeEeech
Confidence 998654332 22234667778776554
No 162
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.49 E-value=2.9 Score=37.80 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=41.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---EEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEeecC
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV---YETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYDEC 118 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~---~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D~d 118 (349)
.++|+|..+.++ ..+......-||.+.+ |+.. .+|+...- +.++.|||.+.|.+.- ....|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 577788887633 2222122234555432 4332 24444333 3479999999998642 2688999999964
No 163
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=89.19 E-value=0.47 Score=40.32 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=41.1
Q ss_pred eEEEEeeeeee----cccc--Cc--CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeeccccc
Q psy3181 254 RLNITVVQILS----IGRY--LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFS 310 (349)
Q Consensus 254 ~lsiti~~~~~----~~~~--~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 310 (349)
.|.|+|++|.- -..- |- |||.|..|.. ++ ||. |||...-.+ ...+.++|+|...++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~-WnE~f~f~v~~~~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPR-WNEQYTWPVYDPCTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCc-ceeEEEEEecCCCCEEEEEEEECCCcc
Confidence 47888988873 3222 22 9999999988 76 899 999776544 346888999988774
No 164
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.57 E-value=2.2 Score=36.59 Aligned_cols=54 Identities=17% Similarity=0.337 Sum_probs=38.0
Q ss_pred EEEecCCCCCCCccceEEEEEec----cCCeEEEEEEeecCCCCCC----ceeEEEEEeCCc
Q psy3181 82 ETHTDPSGGKFPRWNKEVFCLLP----QGVTSIYLEIYDECSFTMD----ELIAWAKIPIPS 135 (349)
Q Consensus 82 kTkvvk~~~~nP~WnEtF~F~V~----~~~~~L~I~V~D~d~~skd----d~LG~v~I~L~e 135 (349)
.|+...-+..++.|||.+.|.+. +.+..|.|+||+.+..... ..||.+.++|-+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence 45443332248999999999864 2369999999998766544 689999999873
No 165
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=88.50 E-value=0.4 Score=35.83 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=45.5
Q ss_pred EEEEeeeeeeccccCc-----CceeEEecee----ec--------CChhhHhhhhhhh----heeeeeeeeecccccccC
Q psy3181 255 LNITVVQILSIGRYLV-----PTYQIVSGAY----YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANK 313 (349)
Q Consensus 255 lsiti~~~~~~~~~~~-----~~~~~~~~~~----~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 313 (349)
|.|+|++|.-...... ||+++.++.. ++ +|. |++.+.-.+ .+.+.++|+|...|..++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~-w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPV-WNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEE-EEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccce-eeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 7899999998777433 8888888652 33 777 998776553 777999999999998766
Q ss_pred cc
Q psy3181 314 PI 315 (349)
Q Consensus 314 ~~ 315 (349)
-|
T Consensus 80 ~i 81 (85)
T PF00168_consen 80 LI 81 (85)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 166
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=88.42 E-value=0.79 Score=37.71 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=45.0
Q ss_pred CcceEEEEeeeeeeccccCc-----CceeEEece------eec--------CChhhHhhhhhhh-------heeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGA------YYR--------SSRSEQEVCSCKF-------LALIKLDIL 304 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~------~~~--------~~~~~~~~~~~~~-------~~~~~~~~~ 304 (349)
..|+|.|+|+++.-...... ||++|..+. -++ ||. |||...-.. -..+.++|+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE-WNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc-cccEEEEcccCHHHhCCCEEEEEEE
Confidence 46899999999986544322 999998753 122 787 998643322 346889999
Q ss_pred ecccccccCcc
Q psy3181 305 DTYLFSANKPI 315 (349)
Q Consensus 305 ~~~~~~~~~~~ 315 (349)
|...|+.++-|
T Consensus 93 d~~~~~~~~~i 103 (125)
T cd04031 93 DYDRDGENDFL 103 (125)
T ss_pred eCCCCCCCcEe
Confidence 99888777644
No 167
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=88.14 E-value=10 Score=33.72 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=54.6
Q ss_pred CcEEEEEECCeE-EEEEecCC-CCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCceeEEEEEeCCccccC---Ccce
Q psy3181 69 DPYVRLRVGHCV-YETHTDPS-GGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMK---GETH 143 (349)
Q Consensus 69 DPYV~V~lg~~~-~kTkvvk~-~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~---g~~~ 143 (349)
.-|++|.++++. .+|+...- ....-.+||.|.+.+..--..|.++||.... ..+..|+++.+++-..-.. ....
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~~~~~~~~ 116 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVHTSTDNVP 116 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCcccccccCCc
Confidence 458888888754 44444322 1123456788999987767899999999887 5688999999998743221 1114
Q ss_pred eeEEEccC
Q psy3181 144 EDWFPLSG 151 (349)
Q Consensus 144 ~~W~~L~~ 151 (349)
..|+...+
T Consensus 117 ~~~~eFsS 124 (168)
T PF15625_consen 117 LEEYEFSS 124 (168)
T ss_pred eEeEEEcC
Confidence 45666643
No 168
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=87.70 E-value=0.73 Score=38.33 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=41.7
Q ss_pred EEEEeeeeeeccccC---c--CceeEEec-ee-ec--------CChhhHhhhhhhh--heeeeeeeeeccccccc
Q psy3181 255 LNITVVQILSIGRYL---V--PTYQIVSG-AY-YR--------SSRSEQEVCSCKF--LALIKLDILDTYLFSAN 312 (349)
Q Consensus 255 lsiti~~~~~~~~~~---~--~~~~~~~~-~~-~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 312 (349)
|-|+|++++-....+ . |||.|..+ .. |+ ||+ |||.+.-.+ ...+.++|+|...|..+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~-Wne~f~~~~~~~~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPK-WNEHFDLTVGPSSIITIQVFDQKKFKKK 75 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCc-ccceEEEEeCCCCEEEEEEEECCCCCCC
Confidence 678999988554333 2 99999984 33 55 899 998766554 56788999998888653
No 169
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=87.56 E-value=0.89 Score=37.03 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=46.9
Q ss_pred ceEEEEeeeeeecccc---------Cc--CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeeccc
Q psy3181 253 GRLNITVVQILSIGRY---------LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYL 308 (349)
Q Consensus 253 g~lsiti~~~~~~~~~---------~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~ 308 (349)
|.|.|+|+++.-.... |. |||.+..|.. |+ ||. |||.....+ -..+.++++|...
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~-W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPK-WNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCc-ccceEEEEeCCCCCCEEEEEEEecCC
Confidence 7899999999755432 23 9999999754 54 788 999754333 4467788888877
Q ss_pred ccccCccchhhhhhhhhhhh
Q psy3181 309 FSANKPIPLLKKFKIRTRSL 328 (349)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~ 328 (349)
+ .++ .+-++.+...++
T Consensus 80 ~-~~~---~iG~~~i~l~~l 95 (121)
T cd08391 80 D-KDD---FLGRLSIDLGSV 95 (121)
T ss_pred C-CCC---cEEEEEEEHHHh
Confidence 6 443 233444444444
No 170
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=87.30 E-value=0.97 Score=38.23 Aligned_cols=64 Identities=9% Similarity=0.009 Sum_probs=44.8
Q ss_pred eEEEEeeeeeeccc---cCc--CceeEEecee-ec--------CChhhHhhhhhhhh-------------eeeeeeeeec
Q psy3181 254 RLNITVVQILSIGR---YLV--PTYQIVSGAY-YR--------SSRSEQEVCSCKFL-------------ALIKLDILDT 306 (349)
Q Consensus 254 ~lsiti~~~~~~~~---~~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~~-------------~~~~~~~~~~ 306 (349)
+|-|+|+++.-... .|. ||+.|..|.. ++ ||. |||...-..+ ..+.++|+|.
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~-Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPT-WDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCc-cCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 68888988875432 222 8999988654 55 888 9997654321 3588999999
Q ss_pred ccccccCccchh
Q psy3181 307 YLFSANKPIPLL 318 (349)
Q Consensus 307 ~~~~~~~~~~~~ 318 (349)
..++.++.|--.
T Consensus 81 d~~~~d~~iG~~ 92 (135)
T cd04017 81 DSVGKDEFLGRS 92 (135)
T ss_pred cCCCCCccceEE
Confidence 888887766433
No 171
>KOG1327|consensus
Probab=87.29 E-value=1.5 Score=45.88 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=56.3
Q ss_pred CCCCCCCCCCcEEEEEEC-------------------CeEEEEEecCCCCCCCccceEEEEEeccC-CeEEEEEEeecCC
Q psy3181 60 KNYGLVTKMDPYVRLRVG-------------------HCVYETHTDPSGGKFPRWNKEVFCLLPQG-VTSIYLEIYDECS 119 (349)
Q Consensus 60 ~~~d~~G~sDPYV~V~lg-------------------~~~~kTkvvk~~~~nP~WnEtF~F~V~~~-~~~L~I~V~D~d~ 119 (349)
.+.|..++.||-|.+... .+..+|.++.+ ..||.|-+.|.+....+ ...+++.++|-+.
T Consensus 3 ~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~ 81 (529)
T KOG1327|consen 3 MAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS 81 (529)
T ss_pred cccccccccCceeeeeccCCCccccccccccccccccccccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCC
Confidence 344556777777776431 12346777766 55999999988875443 5789999999764
Q ss_pred C----CCCceeEEEEEeCCccccC
Q psy3181 120 F----TMDELIAWAKIPIPSSVMK 139 (349)
Q Consensus 120 ~----skdd~LG~v~I~L~e~l~~ 139 (349)
. ...+|+|++...+.+.+..
T Consensus 82 ~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 82 RTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred ccCCcchhcccceeeeehhhhhhh
Confidence 3 4578999999999976653
No 172
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=87.17 E-value=1.1 Score=36.49 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=43.5
Q ss_pred ceEEEEeeeeeeccc---c-Cc--CceeEEec---ee-ec--------CChhhHhhhhhhh-------heeeeeeeeecc
Q psy3181 253 GRLNITVVQILSIGR---Y-LV--PTYQIVSG---AY-YR--------SSRSEQEVCSCKF-------LALIKLDILDTY 307 (349)
Q Consensus 253 g~lsiti~~~~~~~~---~-~~--~~~~~~~~---~~-~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~~ 307 (349)
|.|.|+|+++.-... . |. ||+.+..+ .. ++ ||. |||.+.-.+ -..+.++|+|.-
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPV-WEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCc-cceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 789999999985432 2 33 99999762 11 22 888 999775433 246888999998
Q ss_pred cccccCcc
Q psy3181 308 LFSANKPI 315 (349)
Q Consensus 308 ~~~~~~~~ 315 (349)
.|+.++.|
T Consensus 80 ~~~~dd~l 87 (111)
T cd04041 80 RFTADDRL 87 (111)
T ss_pred CCCCCCcc
Confidence 88877644
No 173
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=86.28 E-value=1.2 Score=37.18 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=42.7
Q ss_pred cceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCc
Q psy3181 252 VGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKP 314 (349)
Q Consensus 252 ~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 314 (349)
-+.|.|+|+++.-.+.... |||.|..|.. ++ ||. |||...-.. ...+.++|+|...+. ++.
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~ 79 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPE-FDTQAIFYRKKPRSPIKIQVWNSNLLC-DEF 79 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCc-ccceEEEEecCCCCEEEEEEEECCCCC-CCc
Confidence 3678999999986655422 9999988654 55 888 999763322 346888999876664 443
No 174
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=86.15 E-value=1.1 Score=36.04 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=51.1
Q ss_pred EEEEeeeeeeccccC---c--CceeEEecee-ec--------CChhhHhhhhhhhh----eeeeeeeeecccccccCccc
Q psy3181 255 LNITVVQILSIGRYL---V--PTYQIVSGAY-YR--------SSRSEQEVCSCKFL----ALIKLDILDTYLFSANKPIP 316 (349)
Q Consensus 255 lsiti~~~~~~~~~~---~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 316 (349)
|.|+|++|+-..... . ||+.|..|.. ++ ||+ |||...-.+. ..+.++|+|... ++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~-Wne~f~f~v~~~~~~~l~v~v~d~~~---~~--- 74 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPV-WEEGFTFLVRNPENQELEIEVKDDKT---GK--- 74 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCc-ccceEEEEeCCCCCCEEEEEEEECCC---CC---
Confidence 789999988775433 2 9999998755 44 888 9997665553 357888888754 22
Q ss_pred hhhhhhhhhhhhhhhhhccccccccccccCCC
Q psy3181 317 LLKKFKIRTRSLFLQIFGIDKVRHSRYVPLLG 348 (349)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (349)
.+-++.+...+|... +.-...++.||.+
T Consensus 75 ~iG~~~i~l~~l~~~----~~~~~~~w~~L~~ 102 (105)
T cd04050 75 SLGSLTLPLSELLKE----PDLTLDQPFPLDN 102 (105)
T ss_pred ccEEEEEEHHHhhcc----ccceeeeeEecCC
Confidence 233444444444321 1223556666654
No 175
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=85.80 E-value=1.1 Score=36.46 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=42.1
Q ss_pred eEEEEeeeeeecccc---Cc--CceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeecccccccCcc
Q psy3181 254 RLNITVVQILSIGRY---LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 254 ~lsiti~~~~~~~~~---~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 315 (349)
.|.|+|+++.-.... |. ||+.+..|.. ++ ||. |||...-.+ -..+.++++|...|+.++.|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQ-WLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCc-eeEEEEEEecCCCCCEEEEEEEECCCCCCCCeE
Confidence 367888888754433 22 9999998754 44 888 999654332 35678888999888777654
No 176
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=85.30 E-value=1.1 Score=39.30 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=43.7
Q ss_pred CcceEEEEeeeeeeccccC----------------------------------c-CceeEEecee--ec--------CCh
Q psy3181 251 PVGRLNITVVQILSIGRYL----------------------------------V-PTYQIVSGAY--YR--------SSR 285 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~----------------------------------~-~~~~~~~~~~--~~--------~~~ 285 (349)
.-|.|.|||.+|...-+.. + ||+.|.+|-. ++ ||+
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 3589999999998765432 1 9999998753 23 999
Q ss_pred hhHhhhhhhh---heeeeeeeeecccccc
Q psy3181 286 SEQEVCSCKF---LALIKLDILDTYLFSA 311 (349)
Q Consensus 286 ~~~~~~~~~~---~~~~~~~~~~~~~~~~ 311 (349)
|||...-.+ ...+.+.|+|.-.|+.
T Consensus 85 -WnE~F~~~~~~~~~~l~~~V~d~d~~~~ 112 (158)
T cd04015 85 -WNESFHIYCAHYASHVEFTVKDNDVVGA 112 (158)
T ss_pred -cceEEEEEccCCCCEEEEEEEeCCCcCC
Confidence 999876443 4567888888876653
No 177
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=83.42 E-value=7.1 Score=32.39 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=48.6
Q ss_pred EEEEEECC-eEEEEEecCCCCCCCccceEEEEEeccC--------CeEEEEEEeecCCCCCCceeEEEEEeCCccccCCc
Q psy3181 71 YVRLRVGH-CVYETHTDPSGGKFPRWNKEVFCLLPQG--------VTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGE 141 (349)
Q Consensus 71 YV~V~lg~-~~~kTkvvk~~~~nP~WnEtF~F~V~~~--------~~~L~I~V~D~d~~skdd~LG~v~I~L~e~l~~g~ 141 (349)
||.+.+.. +...|.++. +.+|.+|-+-.|.|... ...+.|+++..- ....+.+|.+.+++.+.+....
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCC
Confidence 45555543 566777765 45999999988887543 378999999865 3336789999999998775332
Q ss_pred -ceeeEEEccCCCCCCcceEEEEEEEE
Q psy3181 142 -THEDWFPLSGKQGEDKEGMINLVLSY 167 (349)
Q Consensus 142 -~~~~W~~L~~k~g~~~~GeI~L~L~~ 167 (349)
.......|.+..++ .-|.|...+..
T Consensus 79 ~~i~~~~~l~g~~~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE-DFGTLEYWIRL 104 (107)
T ss_dssp --EEEEEEE-BSSS--TSEEEEEEEEE
T ss_pred ceEEEEEEEeccCCC-eEEEEEEEEEe
Confidence 34455566555443 66888877665
No 178
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=82.98 E-value=18 Score=33.08 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=28.5
Q ss_pred EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeec
Q psy3181 80 VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDE 117 (349)
Q Consensus 80 ~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~ 117 (349)
.++|.+.... .+|.|+|++.+.++.. ..-|.|+++..
T Consensus 54 e~~S~V~yH~-~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~ 93 (189)
T cd08695 54 EYRSFVLYHN-NSPRWNETIKLPIPIDKFRGSHLRFEFRHC 93 (189)
T ss_pred eEEEEEEEcC-CCCCCceeEEEecChhhCCCeeEEEEEEEe
Confidence 5778877754 4999999999999865 46678877763
No 179
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=82.94 E-value=2.6 Score=34.79 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=44.0
Q ss_pred CcceEEEEeeeeeeccccCc-----CceeEEecee----ec--------CChhhHhhhhhhh------heeeeeeeeecc
Q psy3181 251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGAY----YR--------SSRSEQEVCSCKF------LALIKLDILDTY 307 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~----~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~ 307 (349)
..|+|.|+|+++.-...... ||+++.++.. ++ ||. |||.....+ ...+.++|+|.-
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~-wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPE-FDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCC-cccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 46999999999986654433 9999998421 32 888 999544332 236888889887
Q ss_pred cccccCc
Q psy3181 308 LFSANKP 314 (349)
Q Consensus 308 ~~~~~~~ 314 (349)
.|+.++-
T Consensus 93 ~~~~~~~ 99 (124)
T cd08387 93 QFSRDEC 99 (124)
T ss_pred CCCCCce
Confidence 7766654
No 180
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=82.66 E-value=1.8 Score=35.17 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=54.0
Q ss_pred EEEEeeeeeeccc----cCc--CceeEEecee-ec--------CChhh-Hhhhhhhh------heeeeeeeeeccccccc
Q psy3181 255 LNITVVQILSIGR----YLV--PTYQIVSGAY-YR--------SSRSE-QEVCSCKF------LALIKLDILDTYLFSAN 312 (349)
Q Consensus 255 lsiti~~~~~~~~----~~~--~~~~~~~~~~-~~--------~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~ 312 (349)
|.|+|+++.-... .|. ||+.+..|.. ++ ||. | ||...-.+ -..+.++|+|...|+.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~-W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPV-WNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCc-ccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCC
Confidence 5789998886532 232 8999988764 54 788 9 77544333 14788999999888877
Q ss_pred CccchhhhhhhhhhhhhhhhhccccccccccccCC
Q psy3181 313 KPIPLLKKFKIRTRSLFLQIFGIDKVRHSRYVPLL 347 (349)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (349)
+-|- ++.....+|..- =++.+++++.||+
T Consensus 80 ~~iG---~~~~~l~~l~~~---~~~~~~~~w~~l~ 108 (110)
T cd08688 80 DAIG---KVYIDLNPLLLK---DSVSQISGWFPIY 108 (110)
T ss_pred CceE---EEEEeHHHhccc---CCccccCCeEEcc
Confidence 5443 333333333321 1344567777765
No 181
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=81.94 E-value=2.3 Score=35.17 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=41.9
Q ss_pred EEEEeeeeeeccc---cCc--CceeEEecee--ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181 255 LNITVVQILSIGR---YLV--PTYQIVSGAY--YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 255 lsiti~~~~~~~~---~~~--~~~~~~~~~~--~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 315 (349)
|-|+|+++.-... .|. |||.|..+.. ++ ||. |||.....+ ...+.++++|...++.++-|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~-Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPF-WGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCc-ccceEEEeeCCCCCEEEEEEEECCCCCCCCEE
Confidence 6678888774433 333 8999988643 33 899 999776655 35788888998887766554
No 182
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.86 E-value=5.3 Score=35.79 Aligned_cols=54 Identities=19% Similarity=0.305 Sum_probs=31.3
Q ss_pred EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecCCCCC---CceeEEEEEeCC
Q psy3181 80 VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDECSFTM---DELIAWAKIPIP 134 (349)
Q Consensus 80 ~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d~~sk---dd~LG~v~I~L~ 134 (349)
.+.|.+... ..+|.|+|+|.+.++.. ..-|.|++++...-.+ ...+|-+.++|-
T Consensus 60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~ 119 (184)
T PF14429_consen 60 SYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLM 119 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB
T ss_pred EEEEEEEec-CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEee
Confidence 456666665 35999999999998754 4778899998543221 157777777776
No 183
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=81.85 E-value=1.8 Score=36.01 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=41.6
Q ss_pred eEEEEeeeeeeccccC---c--CceeEEecee--------ec--------CChhhHhhhhhhh---heeeeeeeeecccc
Q psy3181 254 RLNITVVQILSIGRYL---V--PTYQIVSGAY--------YR--------SSRSEQEVCSCKF---LALIKLDILDTYLF 309 (349)
Q Consensus 254 ~lsiti~~~~~~~~~~---~--~~~~~~~~~~--------~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 309 (349)
.|.|+|+++.-..... . ||+.+.++.. ++ ||. ||+.....+ -..+.++|+|...|
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPK-WNEEFFFRVNPREHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCc-EeeEEEEEEcCCCCEEEEEEEECCCC
Confidence 3789999988655442 2 9999887532 22 788 999544333 34578889998888
Q ss_pred cccCcc
Q psy3181 310 SANKPI 315 (349)
Q Consensus 310 ~~~~~~ 315 (349)
+.++.|
T Consensus 80 ~~~~~i 85 (133)
T cd04033 80 TRDDFL 85 (133)
T ss_pred CCCCee
Confidence 766543
No 184
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=81.81 E-value=2.6 Score=35.60 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=47.3
Q ss_pred CcceEEEEeeeeeeccccCc--CceeEEece-----eec--------CChhhHhhhhhhh------heeeeeeeeecccc
Q psy3181 251 PVGRLNITVVQILSIGRYLV--PTYQIVSGA-----YYR--------SSRSEQEVCSCKF------LALIKLDILDTYLF 309 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~--~~~~~~~~~-----~~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 309 (349)
..|+|.|+|++|.-....|. ||+++-++. ... ||- |||-..-.+ -..+.+.++|---|
T Consensus 12 ~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPv-fnE~f~F~v~~~~l~~~tL~~~V~d~Drf 90 (118)
T cd08677 12 QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQ-WEEELVFPLPEEESLDGTLTLTLRCCDRF 90 (118)
T ss_pred cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCc-cccEEEEeCCHHHhCCcEEEEEEEeCCCC
Confidence 67999999999987764443 999998753 122 777 888665444 23467778888889
Q ss_pred cccCccc
Q psy3181 310 SANKPIP 316 (349)
Q Consensus 310 ~~~~~~~ 316 (349)
+-++.|-
T Consensus 91 s~~d~IG 97 (118)
T cd08677 91 SRHSTLG 97 (118)
T ss_pred CCCceEE
Confidence 9888764
No 185
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=81.79 E-value=2.1 Score=35.10 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=40.7
Q ss_pred EEEEeeeeeeccccCc-----CceeEEece----eec--------CChhhHhhhhhhh----heeeeeeeeecccccccC
Q psy3181 255 LNITVVQILSIGRYLV-----PTYQIVSGA----YYR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANK 313 (349)
Q Consensus 255 lsiti~~~~~~~~~~~-----~~~~~~~~~----~~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 313 (349)
|.|+|+++.-.++... ||+.|..+. .++ ||. |||...-.+ .+.+.+.++|...| .++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~-Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~ 79 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPV-WNETFEFRIQSQVKNVLELTVMDEDYV-MDD 79 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCc-cceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence 7899999987765532 999998752 133 788 998644222 44678889998777 555
Q ss_pred cc
Q psy3181 314 PI 315 (349)
Q Consensus 314 ~~ 315 (349)
.|
T Consensus 80 ~i 81 (119)
T cd04036 80 HL 81 (119)
T ss_pred cc
Confidence 43
No 186
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=81.70 E-value=2.5 Score=35.03 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=45.0
Q ss_pred CcceEEEEeeeeeeccccC---c--CceeEEece------eec--------CChhhHhhhhhhh------heeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGA------YYR--------SSRSEQEVCSCKF------LALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~------~~~~~~~~~~ 305 (349)
..|+|.|+|+++.-..... . ||++|.++. -++ ||. ||+.....+ ...+.++|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~-wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPV-FNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCe-eeeeEEEECCHHHhCCcEEEEEEEe
Confidence 4589999999998665532 2 899988742 122 788 999644333 3578899999
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
...|..++.|
T Consensus 91 ~~~~~~~~~l 100 (134)
T cd00276 91 KDSVGRNEVI 100 (134)
T ss_pred cCCCCCCcee
Confidence 9888766654
No 187
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=81.68 E-value=2.7 Score=35.36 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=45.0
Q ss_pred CcceEEEEeeeeeeccccCc-----CceeEEece-----e-ec--------CChhhHhhhhhhh----h--eeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGA-----Y-YR--------SSRSEQEVCSCKF----L--ALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~-----~-~~--------~~~~~~~~~~~~~----~--~~~~~~~~~ 305 (349)
+.|+|.|+|+++.-...... ||++|..+. . ++ ||. |||...-.+ + ..+.++|+|
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY-YNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCc-ccceEEEECCHHHhCCCEEEEEEEe
Confidence 56999999999987655432 899998742 1 22 777 998432222 2 257889999
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
...|+.++.|
T Consensus 92 ~~~~~~~~~i 101 (136)
T cd08402 92 YDRIGKNDPI 101 (136)
T ss_pred CCCCCCCcee
Confidence 9988888755
No 188
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=81.53 E-value=2.1 Score=35.74 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=44.8
Q ss_pred CcceEEEEeeeeeeccccC---c--CceeEEecee------ec--------CChhhHhhhhhhh------heeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGAY------YR--------SSRSEQEVCSCKF------LALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~~------~~--------~~~~~~~~~~~~~------~~~~~~~~~~ 305 (349)
..|+|.|+|+++.-..... . ||++|..+.. ++ ||. |||...-.+ -..+.++++|
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPE-FNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCC-cccEEEEECCHHHhCCCEEEEEEEe
Confidence 5699999999998655432 2 9999988531 22 788 998554443 1368889999
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
.-.++.++.|
T Consensus 90 ~d~~~~~~~l 99 (133)
T cd08384 90 KDIGKSNDYI 99 (133)
T ss_pred CCCCCCccEE
Confidence 8777766544
No 189
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=80.52 E-value=2.9 Score=33.91 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=44.0
Q ss_pred ceEEEEeeeeeeccccCc-CceeEEecee-ec--------CChhhHhhhhhhh--------heeeeeeeeecccccccCc
Q psy3181 253 GRLNITVVQILSIGRYLV-PTYQIVSGAY-YR--------SSRSEQEVCSCKF--------LALIKLDILDTYLFSANKP 314 (349)
Q Consensus 253 g~lsiti~~~~~~~~~~~-~~~~~~~~~~-~~--------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 314 (349)
..|.|+|+++.-..+-.. ||+.+..|.. +. ||. |||...-.+ -..+.+.|+|...|..++.
T Consensus 4 ~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~-wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~ 82 (111)
T cd04011 4 FQVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPF-YNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTL 82 (111)
T ss_pred EEEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCc-cccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCc
Confidence 468899999887663222 9999999865 43 677 998764332 2468889999888876655
Q ss_pred c
Q psy3181 315 I 315 (349)
Q Consensus 315 ~ 315 (349)
|
T Consensus 83 i 83 (111)
T cd04011 83 I 83 (111)
T ss_pred c
Confidence 4
No 190
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=80.49 E-value=2.7 Score=35.62 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=45.2
Q ss_pred CcceEEEEeeeeeeccccCc-----CceeEEecee---e---c--------CChhhHhhhhhhh----h--eeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGAY---Y---R--------SSRSEQEVCSCKF----L--ALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~---~---~--------~~~~~~~~~~~~~----~--~~~~~~~~~ 305 (349)
..|.|.|+|+++.-...... ||+.+.+... + . ||. |||...-.+ + ..+.+.++|
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~-wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPF-YNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCc-cceeEEEeCCHHHhCCCEEEEEEEe
Confidence 45999999999986544322 9999987332 1 1 787 999544333 2 247788899
Q ss_pred cccccccCccc
Q psy3181 306 TYLFSANKPIP 316 (349)
Q Consensus 306 ~~~~~~~~~~~ 316 (349)
.-.++.++.|-
T Consensus 91 ~d~~~~~~~iG 101 (135)
T cd08410 91 HNVKSSNDFIG 101 (135)
T ss_pred CCCCCCCcEEE
Confidence 88888888774
No 191
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=80.39 E-value=4.1 Score=34.22 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=44.2
Q ss_pred CcceEEEEeeeeeeccccCc-----CceeEEece--e----ec--------CChhhHhhhh-----hhh-heeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGA--Y----YR--------SSRSEQEVCS-----CKF-LALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~--~----~~--------~~~~~~~~~~-----~~~-~~~~~~~~~~ 305 (349)
..|+|.|+|+++.-...... ||+.+..+. . ++ ||. |||... +.+ -..+.++++|
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~-wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV-FNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc-ccceEEEeCCHHHhCCCEEEEEEEE
Confidence 56999999999996654322 899887621 1 22 787 999543 222 2468899999
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
...|+.++-|
T Consensus 92 ~~~~~~~~~l 101 (136)
T cd08405 92 KDRLSRNDLI 101 (136)
T ss_pred CCCCCCCcEe
Confidence 9888877654
No 192
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=79.96 E-value=11 Score=30.43 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=43.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----EEEEecCCCCCCCccceEEEEEecc----CCeEEEEEEeecC
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRV--GHCV----YETHTDPSGGKFPRWNKEVFCLLPQ----GVTSIYLEIYDEC 118 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~l--g~~~----~kTkvvk~~~~nP~WnEtF~F~V~~----~~~~L~I~V~D~d 118 (349)
+.+++....+..-......++-||.+.+ |++. ..|+... ....+.|||...|.+.- .+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566667666654433333578888854 4432 3444332 23368999999998642 2688999999854
No 193
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=79.40 E-value=3.3 Score=36.45 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=43.9
Q ss_pred CcceEEEEeeeeeecccc---Cc--CceeEEec-----e-eec--------CChhhHhhhhhhh-----h--eeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRY---LV--PTYQIVSG-----A-YYR--------SSRSEQEVCSCKF-----L--ALIKLDIL 304 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~---~~--~~~~~~~~-----~-~~~--------~~~~~~~~~~~~~-----~--~~~~~~~~ 304 (349)
+.|+|.|+|++|.-...- |. ||+.+... . .++ ||. |||...-.. + ..+.+.++
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~-WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV-WNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC-CCCEEEEecCCHHHhCCCEEEEEEE
Confidence 679999999999865433 22 99998652 1 133 788 998664432 1 25788899
Q ss_pred ecccccccCcc
Q psy3181 305 DTYLFSANKPI 315 (349)
Q Consensus 305 ~~~~~~~~~~~ 315 (349)
|...|+.++-|
T Consensus 104 d~d~~~~d~~l 114 (162)
T cd04020 104 DHDKLSSNDFL 114 (162)
T ss_pred eCCCCCCCceE
Confidence 98888766543
No 194
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=78.41 E-value=3.7 Score=34.16 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=45.2
Q ss_pred CCcceEEEEeeeeeeccc---cCc--CceeEEece------eec--------CChhhHhhhhhhhh-----eeeeeeeee
Q psy3181 250 NPVGRLNITVVQILSIGR---YLV--PTYQIVSGA------YYR--------SSRSEQEVCSCKFL-----ALIKLDILD 305 (349)
Q Consensus 250 ~~~g~lsiti~~~~~~~~---~~~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~~-----~~~~~~~~~ 305 (349)
+..|.|.|+|+++.-... -+. ||+.+..+. -++ ||. ||+.+...+. ..+.+.|+|
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~-wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPV-WNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCC-ccceEEEeCCchhcCCEEEEEEEE
Confidence 455999999999865432 233 899988863 133 788 9997666552 368888999
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
...+..++-|
T Consensus 89 ~~~~~~~~~i 98 (131)
T cd04026 89 WDRTTRNDFM 98 (131)
T ss_pred CCCCCCccee
Confidence 8777655533
No 195
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=78.12 E-value=3.8 Score=33.73 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=39.7
Q ss_pred CcceEEEEeeeeeeccccC---c--CceeEEece------eec--------CChhhHhhhhhhh------heeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGA------YYR--------SSRSEQEVCSCKF------LALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~------~~~~~~~~~~ 305 (349)
..|+|.|+|+++.-..... . ||+++..+- -++ ||. |||...-.+ -..+.+.|+|
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~-wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV-FDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCE-ECeEEEEecCHHHhcCCEEEEEEEE
Confidence 5699999999998654332 2 899998742 233 788 998544433 2466777888
Q ss_pred cccc
Q psy3181 306 TYLF 309 (349)
Q Consensus 306 ~~~~ 309 (349)
...|
T Consensus 93 ~~~~ 96 (127)
T cd04030 93 SKSF 96 (127)
T ss_pred CCcc
Confidence 7765
No 196
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=77.51 E-value=3.8 Score=33.99 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=38.5
Q ss_pred eEEEEeeeeeeccc---cCc--CceeEEecee-ec--------CChhhHhhhhhhhh-------eeeeeeeeeccccc
Q psy3181 254 RLNITVVQILSIGR---YLV--PTYQIVSGAY-YR--------SSRSEQEVCSCKFL-------ALIKLDILDTYLFS 310 (349)
Q Consensus 254 ~lsiti~~~~~~~~---~~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 310 (349)
+|.|+|+++.-... .|. |||.+..|-. ++ ||. |||.+.-.+. ..+.+.|+|...|.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~-Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPV-WNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCc-cceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 47889998876543 232 9999988654 43 787 9987655442 24778888877665
No 197
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=76.39 E-value=4.2 Score=35.41 Aligned_cols=60 Identities=17% Similarity=0.096 Sum_probs=41.7
Q ss_pred EEEEeeeeeecccc---Cc--CceeEEecee-ec---------CChhhHhhhhhhh----heeeeeeeeecccccccCcc
Q psy3181 255 LNITVVQILSIGRY---LV--PTYQIVSGAY-YR---------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 255 lsiti~~~~~~~~~---~~--~~~~~~~~~~-~~---------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 315 (349)
|.|+|+++.-.... |. ||+.+.+|.. ++ ||. |||...-.+ ...+.++|+|.-.++.++.|
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~-WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPS-WNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCc-ccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 78889888866432 33 9999999764 33 787 999765543 35777888887766666543
No 198
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=76.38 E-value=4.8 Score=33.74 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=44.1
Q ss_pred CcceEEEEeeeeeeccccC---c--CceeEEece---e---ec--------CChhhHhhhhhhh----h--eeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGA---Y---YR--------SSRSEQEVCSCKF----L--ALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~---~---~~--------~~~~~~~~~~~~~----~--~~~~~~~~~ 305 (349)
+.|+|.|+|+++.-..... . ||+++..+. . ++ ||- |||...-.+ + ..+.++++|
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~-wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT-YNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCc-ccceEEEECCHHHhCCCEEEEEEEE
Confidence 5699999999999765432 2 999998742 1 22 666 998543222 2 247788999
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
...++.++-|
T Consensus 91 ~~~~~~~~~I 100 (134)
T cd08403 91 YDRVGHNELI 100 (134)
T ss_pred CCCCCCCcee
Confidence 9888877754
No 199
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=75.86 E-value=4.7 Score=33.15 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=42.5
Q ss_pred CcceEEEEeeeeeeccc---cCc--CceeEEece----eec--------CChhhHhhhhhhh------heeeeeeeeecc
Q psy3181 251 PVGRLNITVVQILSIGR---YLV--PTYQIVSGA----YYR--------SSRSEQEVCSCKF------LALIKLDILDTY 307 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~---~~~--~~~~~~~~~----~~~--------~~~~~~~~~~~~~------~~~~~~~~~~~~ 307 (349)
..|+|.|+|+++.-... .|. ||+.|..+- .++ ||. |||...-.+ -..+.++|+|.-
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~-wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV-FNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCc-eeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 67999999999985432 222 899987631 123 787 998544332 136788889887
Q ss_pred cccccCc
Q psy3181 308 LFSANKP 314 (349)
Q Consensus 308 ~~~~~~~ 314 (349)
.|+.++-
T Consensus 93 ~~~~~~~ 99 (124)
T cd08385 93 RFSKHDL 99 (124)
T ss_pred CCCCCce
Confidence 7876653
No 200
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=75.69 E-value=5.4 Score=32.53 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=43.3
Q ss_pred CcceEEEEeeeeeecccc----Cc--CceeEEece------eec--------CChhhHhhhhhhh------heeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRY----LV--PTYQIVSGA------YYR--------SSRSEQEVCSCKF------LALIKLDIL 304 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~----~~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~------~~~~~~~~~ 304 (349)
..|+|.|+|+++.-...- +. ||+++.+.. -++ ||. |||...-.+ -..+.++++
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~-wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV-FNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCc-ccceEEEeCCHHHhCCCEEEEEEE
Confidence 569999999999866432 23 899986621 122 787 998554333 236788888
Q ss_pred ecccccccCcc
Q psy3181 305 DTYLFSANKPI 315 (349)
Q Consensus 305 ~~~~~~~~~~~ 315 (349)
|...|+.++.|
T Consensus 91 d~~~~~~~~~i 101 (123)
T cd08521 91 HHDRFGRNTFL 101 (123)
T ss_pred eCCCCcCCcee
Confidence 88877766644
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=73.79 E-value=2.9 Score=50.36 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCCcceEEEEeeeeeeccccCc----CceeEEecee----------ecCChhhHhhhhhhh----h-eeeeeeeeecccc
Q psy3181 249 QNPVGRLNITVVQILSIGRYLV----PTYQIVSGAY----------YRSSRSEQEVCSCKF----L-ALIKLDILDTYLF 309 (349)
Q Consensus 249 ~~~~g~lsiti~~~~~~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~ 309 (349)
+..-|.|.|||++..... ..+ |||.+.+|.- =.||| |||-.+-.| . ..+.++++|.-.|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~-Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPE-WKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCC-cccceeeeecCCCCCCceEEEEEecCcc
Confidence 567899999999998887 332 9999999943 12999 999988444 2 2499999999999
Q ss_pred ccc
Q psy3181 310 SAN 312 (349)
Q Consensus 310 ~~~ 312 (349)
+-+
T Consensus 2054 ~kd 2056 (2102)
T PLN03200 2054 GKS 2056 (2102)
T ss_pred CCC
Confidence 444
No 202
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=73.64 E-value=4.2 Score=33.92 Aligned_cols=54 Identities=20% Similarity=0.120 Sum_probs=36.7
Q ss_pred eEEEEeeeeeecccc---Cc--CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeeccc
Q psy3181 254 RLNITVVQILSIGRY---LV--PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYL 308 (349)
Q Consensus 254 ~lsiti~~~~~~~~~---~~--~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~ 308 (349)
+|.|+|+++.-.... |. ||+.|..|.. ++ ||+ |||.+.-.. ...+.++|+|.-.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~-Wne~f~f~~~~~~~~l~i~v~d~d~ 72 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPV-WNEKFHFECHNSSDRIKVRVWDEDD 72 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCc-cceEEEEEecCCCCEEEEEEEECCC
Confidence 688999988754432 22 9999998743 44 888 998665332 3467778887643
No 203
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=73.60 E-value=13 Score=33.10 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=35.4
Q ss_pred EEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecCCC-----CCCceeEEEEEeCC
Q psy3181 80 VYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDECSF-----TMDELIAWAKIPIP 134 (349)
Q Consensus 80 ~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d~~-----skdd~LG~v~I~L~ 134 (349)
.++|-+..+ .+|.|+++|.+.++.. ..-|.|++++-..- .....+|-+.++|-
T Consensus 54 ~~~sv~~~~--k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 54 EYTSVVYYH--KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred eEEEEEEcC--CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 344444443 5999999999998644 56788999885522 22456666666655
No 204
>KOG1030|consensus
Probab=73.46 E-value=6 Score=35.51 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=51.4
Q ss_pred CCcceEEEEeeeeeeccccCc-----CceeEEecee-ec--------CChhhHhhhhhhh---heeeeeeeeeccccccc
Q psy3181 250 NPVGRLNITVVQILSIGRYLV-----PTYQIVSGAY-YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSAN 312 (349)
Q Consensus 250 ~~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 312 (349)
...|.|.|+|...+--..+-+ ||+.+.+|-- -. ||= |||..--.+ -...+|.|||+--|+.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPe-WNe~ltf~v~d~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPE-WNEELTFTVKDPNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCc-ccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence 467999999988876655555 9999999754 21 888 998876665 66789999999999998
Q ss_pred Ccc
Q psy3181 313 KPI 315 (349)
Q Consensus 313 ~~~ 315 (349)
+.+
T Consensus 82 D~m 84 (168)
T KOG1030|consen 82 DFM 84 (168)
T ss_pred ccc
Confidence 754
No 205
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=73.44 E-value=4.7 Score=33.44 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=40.1
Q ss_pred EEEEeeeeeeccc-cCc--CceeEEece---eec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181 255 LNITVVQILSIGR-YLV--PTYQIVSGA---YYR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 255 lsiti~~~~~~~~-~~~--~~~~~~~~~---~~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 315 (349)
|-|+|++|.-... .|. |||.+.++- .|+ ||. |||...-.+ -..+.++|+|...++.++.+
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~-Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPF-WDEHFLFELSPNSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCc-cCceEEEEeCCCCCEEEEEEEECCCCCCCceE
Confidence 4567777754322 122 899888862 244 888 999864444 35688999999988777655
No 206
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=73.24 E-value=20 Score=33.07 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=28.9
Q ss_pred eEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeec
Q psy3181 79 CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDE 117 (349)
Q Consensus 79 ~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~ 117 (349)
..++|.+.+.. .+|.|+|++.+.++.. ..-|.|+++..
T Consensus 53 se~~S~V~Yh~-~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~ 93 (196)
T cd08694 53 DEYKSVIYYQV-DKPKWFETFKVAIPIEDFKSSHLRFTFKHR 93 (196)
T ss_pred eeEEEEEEeec-CCCCCceeEEEecChhhCCCeEEEEEEEee
Confidence 46777775553 4999999999999754 46688888764
No 207
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=72.96 E-value=5.9 Score=32.54 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=43.3
Q ss_pred CcceEEEEeeeeeeccccC---c--CceeEEec----eeec--------CChhhHhhhhhhh-------heeeeeeeeec
Q psy3181 251 PVGRLNITVVQILSIGRYL---V--PTYQIVSG----AYYR--------SSRSEQEVCSCKF-------LALIKLDILDT 306 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~----~~~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~ 306 (349)
..++|.|+|+++.-..... . ||+++..+ .-++ ||. |||...-.. -..+.++|+|.
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~-Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPH-WNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCc-cceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 5689999999998554322 2 99998772 1133 788 999664321 24588889988
Q ss_pred ccccccCcc
Q psy3181 307 YLFSANKPI 315 (349)
Q Consensus 307 ~~~~~~~~~ 315 (349)
-.|..++.|
T Consensus 93 d~~~~~~~i 101 (125)
T cd08386 93 DRFSRNDPI 101 (125)
T ss_pred CCCcCCcEe
Confidence 888766543
No 208
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=72.68 E-value=4.9 Score=33.80 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=41.9
Q ss_pred eEEEEeeeeeecccc--Cc--CceeEEe-c-------eeec--------CChhhHhhhhhhhh-------eeeeeeeeec
Q psy3181 254 RLNITVVQILSIGRY--LV--PTYQIVS-G-------AYYR--------SSRSEQEVCSCKFL-------ALIKLDILDT 306 (349)
Q Consensus 254 ~lsiti~~~~~~~~~--~~--~~~~~~~-~-------~~~~--------~~~~~~~~~~~~~~-------~~~~~~~~~~ 306 (349)
+|.|+|++|.-.... |. ||+.|.+ | ..++ ||. |||-+.-.+. +.+.+.++|.
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPv-wNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPK-YNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCc-cCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 478889888766554 33 9999986 5 1233 888 9997765553 3467778887
Q ss_pred ccccccCcc
Q psy3181 307 YLFSANKPI 315 (349)
Q Consensus 307 ~~~~~~~~~ 315 (349)
..++.++.|
T Consensus 80 d~~~~dd~I 88 (120)
T cd08395 80 CFARDDRLV 88 (120)
T ss_pred cccCCCCEE
Confidence 656667655
No 209
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=72.53 E-value=6.8 Score=32.19 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=39.6
Q ss_pred eEEEEeeeeeecccc---Cc--CceeEEecee----ec--------CChhhHhhhhhhh----heeeeeeeeeccccccc
Q psy3181 254 RLNITVVQILSIGRY---LV--PTYQIVSGAY----YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSAN 312 (349)
Q Consensus 254 ~lsiti~~~~~~~~~---~~--~~~~~~~~~~----~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 312 (349)
+|.|+|+++.-...- +. ||+.|..+.. ++ ||. |||-..-.+ ...+.++|+|.-.+..+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~-Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPR-WDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCc-ccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 588999988855432 22 8998875421 33 788 997665544 24678888988777544
Q ss_pred Cc
Q psy3181 313 KP 314 (349)
Q Consensus 313 ~~ 314 (349)
..
T Consensus 81 ~~ 82 (126)
T cd04043 81 DL 82 (126)
T ss_pred ce
Confidence 43
No 210
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=72.51 E-value=5.7 Score=32.03 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=39.7
Q ss_pred EEEEeeeeeecccc---C--cCceeEEecee--ec--------CChhhHhhhhhhh----heeeeeeeeecccccccCcc
Q psy3181 255 LNITVVQILSIGRY---L--VPTYQIVSGAY--YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 255 lsiti~~~~~~~~~---~--~~~~~~~~~~~--~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 315 (349)
|.|+|+++.-.... | =||+.|..+.. ++ ||. |||.+.-.+ ...+.++|+|...|+.++-|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~-Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPV-WNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCc-ccccEEEEeccCCCCEEEEEEEeCCCCCCCCce
Confidence 45778877644332 2 28998888432 33 677 999666554 35688999998888766543
No 211
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=72.23 E-value=6.3 Score=33.95 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=47.5
Q ss_pred CcceEEEEeeeeeeccccC------c-CceeEEeceee--------------cCChhhHhhhhhhh------heeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYL------V-PTYQIVSGAYY--------------RSSRSEQEVCSCKF------LALIKLDI 303 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~------~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~------~~~~~~~~ 303 (349)
..|+|.|+|++|.-..... . ||+++.++..- .||- |||...-.+ -..+.+.+
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPv-fNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPV-WNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCc-cccEEEEECCHHHhCccEEEEEE
Confidence 6799999999998876442 3 99999886531 1777 888766554 24577888
Q ss_pred eecccccccCcc
Q psy3181 304 LDTYLFSANKPI 315 (349)
Q Consensus 304 ~~~~~~~~~~~~ 315 (349)
+|...|+.|+.|
T Consensus 92 ~d~d~~~~~d~i 103 (138)
T cd08407 92 LNQDSPGQSLPL 103 (138)
T ss_pred EeCCCCcCccee
Confidence 898889888765
No 212
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=72.17 E-value=4.9 Score=35.33 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=38.8
Q ss_pred CcceEEEEeeeeeecccc---Cc--CceeEEecee------------------------------ec--------CChhh
Q psy3181 251 PVGRLNITVVQILSIGRY---LV--PTYQIVSGAY------------------------------YR--------SSRSE 287 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~---~~--~~~~~~~~~~------------------------------~~--------~~~~~ 287 (349)
+.|.|.|+|+++.-.... |. |||.+.++.. ++ ||. |
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~-W 104 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV-W 104 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc-c
Confidence 569999999999765432 33 9999887521 22 888 9
Q ss_pred Hhhhhhhh----heeeeeeeeecc
Q psy3181 288 QEVCSCKF----LALIKLDILDTY 307 (349)
Q Consensus 288 ~~~~~~~~----~~~~~~~~~~~~ 307 (349)
||.....+ -..+.++|+|..
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d 128 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD 128 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC
Confidence 98555443 346788888764
No 213
>KOG0694|consensus
Probab=70.67 E-value=1.2 Score=47.67 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=37.1
Q ss_pred CCCcEEEEEECCeEE-EEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCCCCCc
Q psy3181 67 KMDPYVRLRVGHCVY-ETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDE 124 (349)
Q Consensus 67 ~sDPYV~V~lg~~~~-kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~skdd 124 (349)
..+||+.|.+.-... .+.+ +..+..|.|+++|.+.+..+ ..+.|.|+.......+.
T Consensus 27 al~~y~~v~vk~~~~~~~~~-~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~ 83 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMT-KVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKAL 83 (694)
T ss_pred hhhhhheeccceeecccccC-CCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhh
Confidence 357898887764332 2222 44466999999999996544 67778888875444443
No 214
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=70.09 E-value=6.2 Score=34.53 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=34.3
Q ss_pred CceeEEecee-ec--------CChhhHhhhhhhh-----heeeeeeeeecccccccCccc
Q psy3181 271 PTYQIVSGAY-YR--------SSRSEQEVCSCKF-----LALIKLDILDTYLFSANKPIP 316 (349)
Q Consensus 271 ~~~~~~~~~~-~~--------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 316 (349)
||++|..|.. .+ ||. |||...-.+ -..+.++++|...++.++.|.
T Consensus 37 PYV~V~~~g~~~kT~v~~~t~nPv-WNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG 95 (151)
T cd04018 37 PYVEVSFAGQKVKTSVKKNSYNPE-WNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIG 95 (151)
T ss_pred cEEEEEECCEeeecceEcCCCCCC-cceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEE
Confidence 9999988654 33 888 999876543 247789999999998888764
No 215
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=69.86 E-value=8.1 Score=32.41 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=42.9
Q ss_pred CcceEEEEeeeeeeccc---c-Cc--CceeEEecee----ec--------CChhhHhhhhh-hh----h--eeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGR---Y-LV--PTYQIVSGAY----YR--------SSRSEQEVCSC-KF----L--ALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~---~-~~--~~~~~~~~~~----~~--------~~~~~~~~~~~-~~----~--~~~~~~~~~ 305 (349)
..++|.|+|+++.-... . |. ||+.+..+.. ++ ||. |||...- .+ + ..+.+.|+|
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~-wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPV-YDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCc-eeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 56899999999987754 2 33 8999976421 22 888 9886553 11 1 246777788
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
...|+.++.|
T Consensus 93 ~d~~~~d~~l 102 (128)
T cd08388 93 FDRYSRDDVI 102 (128)
T ss_pred cCCCCCCcee
Confidence 7777776654
No 216
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=68.38 E-value=8.9 Score=31.32 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=38.0
Q ss_pred eEEEEeeeeeeccc-----cCc--CceeEEec------ee-ec---------CChhhHhhhhh----hhheeeeeeeeec
Q psy3181 254 RLNITVVQILSIGR-----YLV--PTYQIVSG------AY-YR---------SSRSEQEVCSC----KFLALIKLDILDT 306 (349)
Q Consensus 254 ~lsiti~~~~~~~~-----~~~--~~~~~~~~------~~-~~---------~~~~~~~~~~~----~~~~~~~~~~~~~ 306 (349)
+|.|+|+++.-... .+. ||+.+... .. ++ ||. |||.... ...+.+.++|+|.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~-w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPV-WNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCc-cCCcEEEEEeCCCeEEEEEEEEeC
Confidence 58889988875543 233 88887772 11 22 677 9985433 3356789999998
Q ss_pred ccccccCc
Q psy3181 307 YLFSANKP 314 (349)
Q Consensus 307 ~~~~~~~~ 314 (349)
..+ -++.
T Consensus 82 ~~~-~~~~ 88 (128)
T cd00275 82 DSG-DDDF 88 (128)
T ss_pred CCC-CCcE
Confidence 877 4443
No 217
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=68.34 E-value=54 Score=33.01 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=78.3
Q ss_pred cCCCCcceEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCC-ccceEEEEEeccCCeEEEEEEeecC
Q psy3181 40 SLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFP-RWNKEVFCLLPQGVTSIYLEIYDEC 118 (349)
Q Consensus 40 ~~~~~~~G~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP-~WnEtF~F~V~~~~~~L~I~V~D~d 118 (349)
.......-.|.|.|.+-.++... ..-|+.++.|...++|..+.-+-.+- .-.+...+.+..-+.+|++.||-..
T Consensus 51 GIHnHRkF~LLVeI~EI~~i~k~-----khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKk 125 (508)
T PTZ00447 51 GLHNYRTFYLLVKINEIFNINKY-----KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTK 125 (508)
T ss_pred cccccceeeEEEEehhhhccccc-----eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecc
Confidence 34455566678888776655433 34799999998888885543222122 2234444445555789999999987
Q ss_pred CCCCCceeEEEEEeCCccccC-CcceeeEEEccCCCCCCcceEEEEEEE
Q psy3181 119 SFTMDELIAWAKIPIPSSVMK-GETHEDWFPLSGKQGEDKEGMINLVLS 166 (349)
Q Consensus 119 ~~skdd~LG~v~I~L~e~l~~-g~~~~~W~~L~~k~g~~~~GeI~L~L~ 166 (349)
+.+...||.+.+.++..+-. .-...+||-+. ++| ...+.|.|++-
T Consensus 126 -Lvkk~hIgdI~InIn~dIIdk~FPKnkWy~c~-kDG-q~~cRIqLSFh 171 (508)
T PTZ00447 126 -LTKKVHIGQIKIDINASVISKSFPKNEWFVCF-KDG-QEICKVQMSFY 171 (508)
T ss_pred -ccceeEEEEEEecccHHHHhccCCccceEEEe-cCC-ceeeeEEEEeh
Confidence 45578999999999865443 33466899996 434 35678887773
No 218
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=68.12 E-value=9.4 Score=31.87 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=43.8
Q ss_pred CcceEEEEeeeeeeccc----cCc--CceeEEecee------e--------cCChhhHhhhhhhh------heeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGR----YLV--PTYQIVSGAY------Y--------RSSRSEQEVCSCKF------LALIKLDIL 304 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~----~~~--~~~~~~~~~~------~--------~~~~~~~~~~~~~~------~~~~~~~~~ 304 (349)
..|+|.|+|++|.-... .|- ||+++.+... + .||. |||-..-.+ -..+.+.|+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~-wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPV-YNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCc-ccceEEEECCHHHhCCCEEEEEEE
Confidence 67999999999984421 232 9999877311 2 1888 999554433 235888899
Q ss_pred ecccccccCcc
Q psy3181 305 DTYLFSANKPI 315 (349)
Q Consensus 305 ~~~~~~~~~~~ 315 (349)
|...|+.++-|
T Consensus 92 d~~~~~~~~~l 102 (125)
T cd04029 92 HYDRFGRNTFL 102 (125)
T ss_pred ECCCCCCCcEE
Confidence 88878777644
No 219
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=67.98 E-value=11 Score=30.96 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=41.4
Q ss_pred CcceEEEEeeeeeecccc---Cc--CceeEEec--ee----ec--------CChhhHhhhhhh-----hh--eeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRY---LV--PTYQIVSG--AY----YR--------SSRSEQEVCSCK-----FL--ALIKLDIL 304 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~---~~--~~~~~~~~--~~----~~--------~~~~~~~~~~~~-----~~--~~~~~~~~ 304 (349)
..+.|.|+|+++.-..+. +. ||+++.+. .. ++ ||. ||+...-. -+ ..+.++|+
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~-Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPE-FNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCC-ccceEEEcCCCHHHhCCCEEEEEEE
Confidence 458999999999866543 33 89998762 11 22 888 99966432 12 36778889
Q ss_pred ecccccccCc
Q psy3181 305 DTYLFSANKP 314 (349)
Q Consensus 305 ~~~~~~~~~~ 314 (349)
|...| .++-
T Consensus 92 d~~~~-~~~~ 100 (123)
T cd04035 92 DEDRF-GNDF 100 (123)
T ss_pred EcCCc-CCee
Confidence 98877 5543
No 220
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=67.85 E-value=9.4 Score=31.73 Aligned_cols=64 Identities=9% Similarity=0.033 Sum_probs=44.6
Q ss_pred CcceEEEEeeeeeecccc--Cc--CceeEEecee------ec--------CChhhHhhhhhhh-------heeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRY--LV--PTYQIVSGAY------YR--------SSRSEQEVCSCKF-------LALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~--~~--~~~~~~~~~~------~~--------~~~~~~~~~~~~~-------~~~~~~~~~~ 305 (349)
-.|+|.|+|++|.-.... |. ||+++..+.. ++ ||. |||...-.+ -..+.++++|
T Consensus 11 ~~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~-wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 11 KNGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT-FNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred eCCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCC-cccEEEEecCChHHhCCCEEEEEEEe
Confidence 369999999999866432 22 9999988521 22 787 999765332 3567788888
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
.-.|+.++.|
T Consensus 90 ~d~~~~~~~l 99 (122)
T cd08381 90 HDSLVENEFL 99 (122)
T ss_pred CCCCcCCcEE
Confidence 8888776643
No 221
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=65.72 E-value=6.9 Score=33.09 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=40.1
Q ss_pred EEEEeeeeeeccccCcCceeEEe---cee---ec--------CChhhHhhhhhhh--heeeeeeeeecc-------cccc
Q psy3181 255 LNITVVQILSIGRYLVPTYQIVS---GAY---YR--------SSRSEQEVCSCKF--LALIKLDILDTY-------LFSA 311 (349)
Q Consensus 255 lsiti~~~~~~~~~~~~~~~~~~---~~~---~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~~~ 311 (349)
|.|||+++.-.+...=||+.|.+ |+. +. ||+ |||-..-.+ -..+.+.++|.+ .+..
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPv-WnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~~~~ 79 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPN-WNEEFEIELEGSQTLRILCYEKCYSKVKLDGEGT 79 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCc-cceEEEEEeCCCCEEEEEEEEcccccccccccCc
Confidence 67999999877644449999966 332 22 999 999655444 335566677863 4566
Q ss_pred cCcc
Q psy3181 312 NKPI 315 (349)
Q Consensus 312 ~~~~ 315 (349)
++.+
T Consensus 80 d~~~ 83 (118)
T cd08686 80 DAIM 83 (118)
T ss_pred ccEE
Confidence 6655
No 222
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=64.99 E-value=11 Score=31.68 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=42.0
Q ss_pred CcceEEEEeeeeeecccc---Cc--CceeEEece--------eec--------CChhhHhhhhhhh--------heeeee
Q psy3181 251 PVGRLNITVVQILSIGRY---LV--PTYQIVSGA--------YYR--------SSRSEQEVCSCKF--------LALIKL 301 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~---~~--~~~~~~~~~--------~~~--------~~~~~~~~~~~~~--------~~~~~~ 301 (349)
..++|.|+|+++.-.... |. ||++|..+. -++ ||. |||...-.+ -..+.+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~-wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPL-FDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCc-cCCEEEEEechhhcccCCCEEEE
Confidence 357899999999855432 22 999998752 133 677 998554443 236788
Q ss_pred eeeecccccccC
Q psy3181 302 DILDTYLFSANK 313 (349)
Q Consensus 302 ~~~~~~~~~~~~ 313 (349)
.++|...|+.++
T Consensus 93 ~V~d~d~~~~d~ 104 (133)
T cd04009 93 TVKDYDLLGSND 104 (133)
T ss_pred EEEecCCCCCCc
Confidence 889988777554
No 223
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=64.34 E-value=14 Score=30.96 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=42.6
Q ss_pred CcceEEEEeeeeeeccccC---c--CceeEEecee------ec--------CChhhHhhh----hhhhhe--eeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGAY------YR--------SSRSEQEVC----SCKFLA--LIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~~------~~--------~~~~~~~~~----~~~~~~--~~~~~~~~ 305 (349)
..+.|.|+|+++.-..... . ||+.|..... ++ ||. |||-. .+..+. .+.+.|+|
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~-w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV-FNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCc-cCceEEEECCHHHhCCCEEEEEEEE
Confidence 5689999999998655432 2 9999977321 22 777 98832 332233 35567889
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
.-.|+.++.|
T Consensus 92 ~d~~~~~~~i 101 (136)
T cd08404 92 SDRVTKNEVI 101 (136)
T ss_pred CCCCCCCccE
Confidence 8888877765
No 224
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=64.08 E-value=10 Score=31.51 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=40.3
Q ss_pred EEEEeeeeeecccc---Cc--CceeEEecee-e--c--------CChhhHhhhhhhh----heeeeeeeeecccccccCc
Q psy3181 255 LNITVVQILSIGRY---LV--PTYQIVSGAY-Y--R--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKP 314 (349)
Q Consensus 255 lsiti~~~~~~~~~---~~--~~~~~~~~~~-~--~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 314 (349)
|.|+|+++.-...- |. ||+.+..|.. + + ||. |||...-.. .+.+.++++|...|+.++.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~-Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPV-FGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCc-cceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 56777777644332 22 9999998764 2 1 777 987554432 4568889999888877765
Q ss_pred c
Q psy3181 315 I 315 (349)
Q Consensus 315 ~ 315 (349)
|
T Consensus 81 i 81 (124)
T cd04037 81 I 81 (124)
T ss_pred e
Confidence 4
No 225
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=62.03 E-value=12 Score=31.29 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=47.9
Q ss_pred EEEEeeeeeeccccC--------cCceeEEecee--ec-----CChhhHhhhhhhh--heeeeeeeeecccccccCccc-
Q psy3181 255 LNITVVQILSIGRYL--------VPTYQIVSGAY--YR-----SSRSEQEVCSCKF--LALIKLDILDTYLFSANKPIP- 316 (349)
Q Consensus 255 lsiti~~~~~~~~~~--------~~~~~~~~~~~--~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 316 (349)
|+|||+.|.-+..-- =||+-|.+|-. ++ |+| |||=..-.+ -+.+.|.++|. +.+.++|
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~srnd~-WnE~F~i~Vdk~nEiel~VyDk---~~~~~~Pi 76 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPSRNDR-WNEDFEIPVEKNNEEEVIVYDK---GGDQPVPV 76 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCCCCCc-ccceEEEEecCCcEEEEEEEeC---CCCeecce
Confidence 567777776544322 27788877655 44 999 988644444 77888999998 4455444
Q ss_pred -hh-hhhhhhhhhhhhhhhc
Q psy3181 317 -LL-KKFKIRTRSLFLQIFG 334 (349)
Q Consensus 317 -~~-~~~~~~~~~~~~~~~~ 334 (349)
++ =+.-.-+|++|.+=.+
T Consensus 77 ~llW~~~sdi~Ee~Rrkkv~ 96 (109)
T cd08689 77 GLLWLRLSDIAEEIRKKKVG 96 (109)
T ss_pred eeehhhHHHHHHHHHHHHHh
Confidence 33 3444456777765443
No 226
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=59.87 E-value=16 Score=29.67 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=41.5
Q ss_pred CcceEEEEeeeeeecccc----Cc--CceeEEece----eec--------CChhhHhhhhhhh----h--eeeeeeeeec
Q psy3181 251 PVGRLNITVVQILSIGRY----LV--PTYQIVSGA----YYR--------SSRSEQEVCSCKF----L--ALIKLDILDT 306 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~----~~--~~~~~~~~~----~~~--------~~~~~~~~~~~~~----~--~~~~~~~~~~ 306 (349)
..++|.|+|+++.-.... +- ||+.+.+.. .++ ||. |||...-.+ + ..+.++|+|.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~-wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPN-FDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCc-cceEEEEEcCHHHhcccEEEEEEEEC
Confidence 568999999999855432 22 888887632 122 787 999554332 2 3578888988
Q ss_pred ccccccCc
Q psy3181 307 YLFSANKP 314 (349)
Q Consensus 307 ~~~~~~~~ 314 (349)
..++.++.
T Consensus 91 ~~~~~~~~ 98 (123)
T cd08390 91 DRFSRHCI 98 (123)
T ss_pred CcCCCCcE
Confidence 77765543
No 227
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=59.01 E-value=16 Score=30.37 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=43.6
Q ss_pred CcceEEEEeeeeeecccc----Cc--CceeEEece------eec--------CChhhHhhhhhhh------heeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRY----LV--PTYQIVSGA------YYR--------SSRSEQEVCSCKF------LALIKLDIL 304 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~----~~--~~~~~~~~~------~~~--------~~~~~~~~~~~~~------~~~~~~~~~ 304 (349)
..++|.|+|++|.-.... |. ||+++.... -++ ||. |||...-.+ -..+.+.++
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~-~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPV-FNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCc-cCceEEEECCHHHhCCCEEEEEEE
Confidence 358999999999854322 22 999987731 122 888 999655443 246788888
Q ss_pred ecccccccCcc
Q psy3181 305 DTYLFSANKPI 315 (349)
Q Consensus 305 ~~~~~~~~~~~ 315 (349)
|...|+.++.|
T Consensus 92 d~~~~~~~~~i 102 (125)
T cd08393 92 HRDSLGRNSFL 102 (125)
T ss_pred eCCCCCCCcEe
Confidence 88778777654
No 228
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=58.45 E-value=1.1e+02 Score=31.51 Aligned_cols=106 Identities=12% Similarity=0.196 Sum_probs=61.7
Q ss_pred CCCcEEEEEECCeEEEEEecC---CCCCCC-cc---ceEEEEEec------cC------CeEEEEEEeecCC-----C-C
Q psy3181 67 KMDPYVRLRVGHCVYETHTDP---SGGKFP-RW---NKEVFCLLP------QG------VTSIYLEIYDECS-----F-T 121 (349)
Q Consensus 67 ~sDPYV~V~lg~~~~kTkvvk---~~~~nP-~W---nEtF~F~V~------~~------~~~L~I~V~D~d~-----~-s 121 (349)
.+..||+|++.+-..+|..+- ....+| .- -..|.+.-. .. ...|+|.||--.. + .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 456799999987555554432 111111 11 123444311 11 2579999998432 2 4
Q ss_pred CCceeEEEEEeCCccccCCc---ceeeEEEccCCCC---CCcceEEEEEEEEEEccc
Q psy3181 122 MDELIAWAKIPIPSSVMKGE---THEDWFPLSGKQG---EDKEGMINLVLSYTVSFF 172 (349)
Q Consensus 122 kdd~LG~v~I~L~e~l~~g~---~~~~W~~L~~k~g---~~~~GeI~L~L~~~p~~~ 172 (349)
+..+||.+.|+|+-.-..+. .+..|..+-.+.. .....+|||.+...|..-
T Consensus 115 ~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPR 171 (460)
T PF06219_consen 115 SGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPR 171 (460)
T ss_pred cceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCe
Confidence 46799999999983222222 3667999854321 234679999998776544
No 229
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=57.42 E-value=15 Score=30.51 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=38.2
Q ss_pred EEEEeeeeeecccc-CcCceeEEecee-ec--------CChhhHhhhhhhh----heeeeeeeeecccccccC
Q psy3181 255 LNITVVQILSIGRY-LVPTYQIVSGAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANK 313 (349)
Q Consensus 255 lsiti~~~~~~~~~-~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 313 (349)
|.|+|+++.-.... .=||+.+..|.. .+ ||. |||...-.. -..+.+.|+|.-.+ .++
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~-Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPE-WNQVFAFSKDRLQGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCc-cceEEEEEcCCCcCCEEEEEEEeCCCC-cCc
Confidence 67888888744332 228899988754 32 777 998765544 24577888888766 444
No 230
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=56.62 E-value=16 Score=37.21 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=31.5
Q ss_pred eeEEEEEeCCccccCCcceeeEEEccCCC-CCCcceEEEEEEEEE
Q psy3181 125 LIAWAKIPIPSSVMKGETHEDWFPLSGKQ-GEDKEGMINLVLSYT 168 (349)
Q Consensus 125 ~LG~v~I~L~e~l~~g~~~~~W~~L~~k~-g~~~~GeI~L~L~~~ 168 (349)
.+|.+.|+++.++..+...+.||++.+.. +....|.+ |++.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 48999999996577777889999997632 23344666 677765
No 231
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=56.16 E-value=1.2e+02 Score=26.65 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=51.4
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEC----------Ce-EEEEEecCCC----CCCCccceEEEEEeccC----CeEE
Q psy3181 50 NITVVQAKLVKNYGLVTKMDPYVRLRVG----------HC-VYETHTDPSG----GKFPRWNKEVFCLLPQG----VTSI 110 (349)
Q Consensus 50 ~V~Iv~ArnL~~~d~~G~sDPYV~V~lg----------~~-~~kTkvvk~~----~~nP~WnEtF~F~V~~~----~~~L 110 (349)
.=.|.+|.+... .+-||+-.+. .. ...|.+.+.. ...-.||--|.+..... -..|
T Consensus 5 ~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 345677776543 3457776541 22 3455554321 23567888877775432 3789
Q ss_pred EEEEeecCCCCCCceeEEEEEeCC
Q psy3181 111 YLEIYDECSFTMDELIAWAKIPIP 134 (349)
Q Consensus 111 ~I~V~D~d~~skdd~LG~v~I~L~ 134 (349)
.|+||..|.++++...|-..+.|-
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeC
Confidence 999999999999999888777665
No 232
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=56.11 E-value=47 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecC
Q psy3181 79 CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDEC 118 (349)
Q Consensus 79 ~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d 118 (349)
..+.|.+...+ .+|.|+|++.+.++.. ..-|.|+.++-+
T Consensus 54 ~~~~S~V~yHn-k~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 54 TEAYTAVTYHN-KSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eeEEEEEEEeC-CCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 45667776664 4999999999998754 466888888743
No 233
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=52.52 E-value=65 Score=29.35 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=30.0
Q ss_pred eEEEEEecCCCCCCCccceEEEEEeccC---CeEEEEEEeecC
Q psy3181 79 CVYETHTDPSGGKFPRWNKEVFCLLPQG---VTSIYLEIYDEC 118 (349)
Q Consensus 79 ~~~kTkvvk~~~~nP~WnEtF~F~V~~~---~~~L~I~V~D~d 118 (349)
....|.+...+ .+|.|+|++.+.++.. ..-|.|+.++-.
T Consensus 56 ~~~~s~V~yh~-k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHN-QNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcC-CCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 45677777664 5999999999998754 466888888854
No 234
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=52.36 E-value=21 Score=29.50 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=41.9
Q ss_pred EEEEeeeeeecccc----Cc--CceeEEecee--ec--------CChhhHhhhhhhh---heeeeeeeeecccccccCcc
Q psy3181 255 LNITVVQILSIGRY----LV--PTYQIVSGAY--YR--------SSRSEQEVCSCKF---LALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 255 lsiti~~~~~~~~~----~~--~~~~~~~~~~--~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 315 (349)
|.|+|.++.-.... |. |||.|.++.. ++ ||. |||...-.+ ...+.+.++|.-.|+.+..|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~-WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPF-FGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCc-cCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence 56777777766443 34 9999988754 43 888 999765544 24667777888888777655
Q ss_pred c
Q psy3181 316 P 316 (349)
Q Consensus 316 ~ 316 (349)
-
T Consensus 81 G 81 (121)
T cd08401 81 G 81 (121)
T ss_pred E
Confidence 3
No 235
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=50.89 E-value=26 Score=29.84 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=43.2
Q ss_pred CcceEEEEeeeeeeccccC---c--CceeEEece---ee-----------cCChhhHhhhhhhh------heeeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYL---V--PTYQIVSGA---YY-----------RSSRSEQEVCSCKF------LALIKLDILD 305 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~---~--~~~~~~~~~---~~-----------~~~~~~~~~~~~~~------~~~~~~~~~~ 305 (349)
..++|.|+|++|.-..... . ||+++.+-. -. .||- |||-..-.+ -..+.+.++|
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~-~nE~f~F~v~~~~l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPI-FNEAMIFSVPAIVLQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCe-eceeEEEECCHHHhCCcEEEEEEEe
Confidence 4689999999998775433 2 899987722 11 1777 887644333 2457788888
Q ss_pred cccccccCcc
Q psy3181 306 TYLFSANKPI 315 (349)
Q Consensus 306 ~~~~~~~~~~ 315 (349)
...|+.++.|
T Consensus 92 ~d~~~~~~~i 101 (136)
T cd08406 92 STEDGKTPNV 101 (136)
T ss_pred CCCCCCCCee
Confidence 7778777654
No 236
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=49.55 E-value=21 Score=31.06 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=38.3
Q ss_pred eEEEEeeeeeeccc-cCc--CceeEEecee------ec--------CChhhHhhhhhhhh-------------------e
Q psy3181 254 RLNITVVQILSIGR-YLV--PTYQIVSGAY------YR--------SSRSEQEVCSCKFL-------------------A 297 (349)
Q Consensus 254 ~lsiti~~~~~~~~-~~~--~~~~~~~~~~------~~--------~~~~~~~~~~~~~~-------------------~ 297 (349)
+|.|+|++|.-... .|. ||+.+..+.. ++ ||. |||...-.+. .
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~-wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQ-FDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCc-cceEEEEEEecccccccccccCCcccccEE
Confidence 47888888765433 233 9999988652 22 777 9987764431 3
Q ss_pred eeeeeeeecccccccCc
Q psy3181 298 LIKLDILDTYLFSANKP 314 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~ 314 (349)
.+.+.|+|...|+.++.
T Consensus 80 ~L~i~V~d~~~~~~ddf 96 (148)
T cd04010 80 ELRVDLWHASMGGGDVF 96 (148)
T ss_pred EEEEEEEcCCCCCCCce
Confidence 45566677777766653
No 237
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=46.90 E-value=16 Score=29.60 Aligned_cols=31 Identities=3% Similarity=-0.087 Sum_probs=22.6
Q ss_pred CChhhHhhhhhhhh----eeeeeeeeecccccccCcc
Q psy3181 283 SSRSEQEVCSCKFL----ALIKLDILDTYLFSANKPI 315 (349)
Q Consensus 283 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 315 (349)
||. |||.+...+. ..+.++|+|.-.| .++.|
T Consensus 37 nP~-Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~i 71 (111)
T cd04052 37 NPS-WNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVL 71 (111)
T ss_pred CCc-cCCceEEEecCcCCCEEEEEEEECCCC-CCCeE
Confidence 888 9998876652 3377888898888 55544
No 238
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=46.67 E-value=32 Score=28.41 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=38.2
Q ss_pred CCcceEEEEeeeeeecccc--Cc--CceeEEeceee------c--------CChhhHhhhhhhh-----heeeeeeeeec
Q psy3181 250 NPVGRLNITVVQILSIGRY--LV--PTYQIVSGAYY------R--------SSRSEQEVCSCKF-----LALIKLDILDT 306 (349)
Q Consensus 250 ~~~g~lsiti~~~~~~~~~--~~--~~~~~~~~~~~------~--------~~~~~~~~~~~~~-----~~~~~~~~~~~ 306 (349)
+..|+|.|+|++|.-.... |. ||+++.++... + ||- |||-.+-.+ -..+-+.|.|.
T Consensus 9 ~~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~-~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 9 GQNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPL-FHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred EcCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCc-cccEEEEEcChHHhCCEEEEEEECC
Confidence 4679999999999754332 32 99999986531 1 555 777554332 12345666666
Q ss_pred ccccc
Q psy3181 307 YLFSA 311 (349)
Q Consensus 307 ~~~~~ 311 (349)
..++.
T Consensus 88 ~~~~~ 92 (119)
T cd08685 88 LSKSR 92 (119)
T ss_pred CCCcC
Confidence 55543
No 239
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=42.96 E-value=85 Score=25.82 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=39.4
Q ss_pred CeEEEEEEeecCC---CCCCceeEEEEEeCCcccc-------------CCcceeeEEEccCCCCCCcceEEEEEEEEE
Q psy3181 107 VTSIYLEIYDECS---FTMDELIAWAKIPIPSSVM-------------KGETHEDWFPLSGKQGEDKEGMINLVLSYT 168 (349)
Q Consensus 107 ~~~L~I~V~D~d~---~skdd~LG~v~I~L~e~l~-------------~g~~~~~W~~L~~k~g~~~~GeI~L~L~~~ 168 (349)
...|.+.+|+-.. .....++|.+.+++.+.+. .......-|+|....+ ...|+|.+.+.++
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~-~~~G~I~l~iRLs 104 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG-NPVGEISLYIRLS 104 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC-ceeeeEEEEEEEe
Confidence 3567776665322 3446789999999986542 1123445678875544 3679999988765
No 240
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=42.42 E-value=27 Score=28.46 Aligned_cols=31 Identities=6% Similarity=0.080 Sum_probs=21.7
Q ss_pred CChhhHhhhhhh----hheeeeeeeeeccc----ccccCc
Q psy3181 283 SSRSEQEVCSCK----FLALIKLDILDTYL----FSANKP 314 (349)
Q Consensus 283 ~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~ 314 (349)
||. |||.+... ....+.++|+|.-. ++.++.
T Consensus 51 nP~-wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~ 89 (120)
T cd04048 51 NPD-FVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDF 89 (120)
T ss_pred CCC-ceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcE
Confidence 888 99965443 25568899998876 555543
No 241
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=40.90 E-value=29 Score=29.48 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=37.3
Q ss_pred EEEEeeeeeeccc--cCc--CceeEEece----e-ec--------CChhhHhhhhhhhh-------------------ee
Q psy3181 255 LNITVVQILSIGR--YLV--PTYQIVSGA----Y-YR--------SSRSEQEVCSCKFL-------------------AL 298 (349)
Q Consensus 255 lsiti~~~~~~~~--~~~--~~~~~~~~~----~-~~--------~~~~~~~~~~~~~~-------------------~~ 298 (349)
|.|+|+++.-... .|. ||++|..+. . ++ ||. ||+-..-.+. ..
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~-Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPR-FDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCC-cceEEEEEccccccccccccccccccccccE
Confidence 4577777764332 222 888888872 1 22 788 9985444432 25
Q ss_pred eeeeeeecccccccCcc
Q psy3181 299 IKLDILDTYLFSANKPI 315 (349)
Q Consensus 299 ~~~~~~~~~~~~~~~~~ 315 (349)
+.++++|...|..++.|
T Consensus 80 l~i~V~d~~~~~~~~~I 96 (137)
T cd08675 80 LRVELWHASMVSGDDFL 96 (137)
T ss_pred EEEEEEcCCcCcCCcEE
Confidence 77888888877655544
No 242
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=40.21 E-value=44 Score=28.42 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=43.3
Q ss_pred CcceEEEEeeeeeeccccCc-----CceeEEecee-------ec--------CChhhHhhhhhhh----h--eeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGRYLV-----PTYQIVSGAY-------YR--------SSRSEQEVCSCKF----L--ALIKLDIL 304 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~~~~-------~~--------~~~~~~~~~~~~~----~--~~~~~~~~ 304 (349)
..|+|.|+|++|.-...-.+ ||+++.+..- +. ||- |||...-.+ + ..+-+.++
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv-fnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE-FKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc-EeeeEEEECCHHHhCccEEEEEEE
Confidence 57999999999987765432 8999977431 11 666 777655444 2 35666777
Q ss_pred ecccccccCccc
Q psy3181 305 DTYLFSANKPIP 316 (349)
Q Consensus 305 ~~~~~~~~~~~~ 316 (349)
|...|+.++.|-
T Consensus 92 ~~~~~~~~~~iG 103 (138)
T cd08408 92 NKRKMKRKEMIG 103 (138)
T ss_pred ECCCCCCCcEEE
Confidence 776677766543
No 243
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=39.81 E-value=45 Score=29.02 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=40.3
Q ss_pred CCcceEEEEeeeeeeccc----cCc--CceeEEecee------ec--------CChhhHhhhhhhh---heeeeeeee-e
Q psy3181 250 NPVGRLNITVVQILSIGR----YLV--PTYQIVSGAY------YR--------SSRSEQEVCSCKF---LALIKLDIL-D 305 (349)
Q Consensus 250 ~~~g~lsiti~~~~~~~~----~~~--~~~~~~~~~~------~~--------~~~~~~~~~~~~~---~~~~~~~~~-~ 305 (349)
|..|+|.|+|++|.-... .|. ||+++.+... +. ||- |||-....+ -..+.+.++ |
T Consensus 26 y~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPv-fNE~F~f~v~l~~~~L~v~V~~d 104 (146)
T cd04028 26 DKKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPL-YQQQLVFDVSPTGKTLQVIVWGD 104 (146)
T ss_pred eCCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCc-cCCeEEEEEcCCCCEEEEEEEeC
Confidence 457999999999976543 234 9999988322 11 776 888766555 335566777 3
Q ss_pred cccccccC
Q psy3181 306 TYLFSANK 313 (349)
Q Consensus 306 ~~~~~~~~ 313 (349)
.-.|+-++
T Consensus 105 ~~~~~~~~ 112 (146)
T cd04028 105 YGRMDKKV 112 (146)
T ss_pred CCCCCCCc
Confidence 33454444
No 244
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=37.91 E-value=45 Score=29.09 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=47.2
Q ss_pred CcceEEEEeeeeeeccccCcCceeEEecee-e-c--------CChhhHhhhhhhh---heeeeeeeeec-ccccccCccc
Q psy3181 251 PVGRLNITVVQILSIGRYLVPTYQIVSGAY-Y-R--------SSRSEQEVCSCKF---LALIKLDILDT-YLFSANKPIP 316 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~~~~~~~~~~~-~-~--------~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~ 316 (349)
..=.|+|.|++|+-.--..=|||.|.++-. + + ||. |+|=.+-.. +..+.+.|+++ ..+....--.
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~-W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~ 87 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKLKTDTLF-WGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQ 87 (146)
T ss_pred EEEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEcCCCCCc-ceeeEEecCCCcccEEEEEEEEccCccccccCCc
Confidence 345789999999865433348999999777 5 2 888 998766554 34566777632 2332211112
Q ss_pred hhhhhhhhhhhhh
Q psy3181 317 LLKKFKIRTRSLF 329 (349)
Q Consensus 317 ~~~~~~~~~~~~~ 329 (349)
++-++.|-.+++.
T Consensus 88 ~IG~V~Ip~~~l~ 100 (146)
T cd04013 88 LIGTVNIPVTDVS 100 (146)
T ss_pred EEEEEEEEHHHhc
Confidence 3345666665554
No 245
>KOG3543|consensus
Probab=35.10 E-value=2.3e+02 Score=30.87 Aligned_cols=112 Identities=13% Similarity=0.249 Sum_probs=73.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEEEEecCCCCCCCccceEEEEEeccCCeEEEEEEeecCCC---CCCce
Q psy3181 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSF---TMDEL 125 (349)
Q Consensus 49 L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~kTkvvk~~~~nP~WnEtF~F~V~~~~~~L~I~V~D~d~~---skdd~ 125 (349)
+.|.|.+..+|+.... .-=.||...+.+.+.+|.-... ..|.|+-.=.|....+-..+++.+|.+... -.|.-
T Consensus 343 mevvvmevqglksvap--nrivyctmevegeklqtdqaea--skp~wgtqgdfstthplpvvkvklftestgvlaledke 418 (1218)
T KOG3543|consen 343 MEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQAEA--SKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKE 418 (1218)
T ss_pred eeEEEeeeccccccCC--CeeEEEEEEecccccccchhhh--cCCCCCcCCCcccCCCCceeEEEEEeecceeEEeechh
Confidence 5566777778765432 1236999999888888876543 489999887777766667788888876531 13667
Q ss_pred eEEEEEeCCccccCCcceeeEEEcc-CCCCCCcceEEEEEEEE
Q psy3181 126 IAWAKIPIPSSVMKGETHEDWFPLS-GKQGEDKEGMINLVLSY 167 (349)
Q Consensus 126 LG~v~I~L~e~l~~g~~~~~W~~L~-~k~g~~~~GeI~L~L~~ 167 (349)
||++.+.-.. +......|+... +++..+..=.|.|.+..
T Consensus 419 lgrvil~ptp---ns~ks~ewh~mtvpknsqdqdlkiklavrm 458 (1218)
T KOG3543|consen 419 LGRVILQPTP---NSAKSPEWHTMTVPKNSQDQDLKIKLAVRM 458 (1218)
T ss_pred hCeEEEecCC---CCcCCccceeeecCCCCcCccceEEEEEec
Confidence 8887775442 223345788764 34444444556666665
No 246
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=34.19 E-value=65 Score=27.01 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=43.4
Q ss_pred CcceEEEEeeeeeeccc----cCc--CceeEEecee------ec--------CChhhHhhhhhhh------heeeeeeee
Q psy3181 251 PVGRLNITVVQILSIGR----YLV--PTYQIVSGAY------YR--------SSRSEQEVCSCKF------LALIKLDIL 304 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~----~~~--~~~~~~~~~~------~~--------~~~~~~~~~~~~~------~~~~~~~~~ 304 (349)
..++|.|+|++|.-... .|. ||+++.+... ++ ||. |||...-.+ ...+.+.|+
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPv-fNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPV-FNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCc-cceEEEEEcCHHHhCCcEEEEEEE
Confidence 45899999999976632 133 8999887321 22 788 998755444 236777778
Q ss_pred ecccccccCcc
Q psy3181 305 DTYLFSANKPI 315 (349)
Q Consensus 305 ~~~~~~~~~~~ 315 (349)
|...|+.++.|
T Consensus 92 ~~~~~~~~~~l 102 (128)
T cd08392 92 HSRTLKRRVFL 102 (128)
T ss_pred eCCCCcCcceE
Confidence 87777766654
No 247
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=33.00 E-value=2.8e+02 Score=22.92 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=47.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEEE-EEecCCCCCCCcc--ceEEEEEeccC---CeEEEEEEeecCC-C
Q psy3181 48 RLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYE-THTDPSGGKFPRW--NKEVFCLLPQG---VTSIYLEIYDECS-F 120 (349)
Q Consensus 48 ~L~V~Iv~ArnL~~~d~~G~sDPYV~V~lg~~~~k-Tkvvk~~~~nP~W--nEtF~F~V~~~---~~~L~I~V~D~d~-~ 120 (349)
.|.++-+.-.++|..+..+.+.||+.|.-++.... +..... .+.- ...+.+.+... ...+.|.+|+.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYE---DPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCC---CCCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEecccee---ccccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 45566666677787777788999999998876653 332211 1111 12233333211 3566777777652 3
Q ss_pred CCCceeEEEEEeCC
Q psy3181 121 TMDELIAWAKIPIP 134 (349)
Q Consensus 121 skdd~LG~v~I~L~ 134 (349)
..++.+..+.+.-.
T Consensus 82 ~~~~~~f~~~FnT~ 95 (134)
T PF10409_consen 82 MSKEKMFRFWFNTG 95 (134)
T ss_dssp CCCEEEEEEEEEGG
T ss_pred cccCeEEEEEEeee
Confidence 34556666666655
No 248
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=26.84 E-value=1.1e+02 Score=26.28 Aligned_cols=27 Identities=4% Similarity=0.031 Sum_probs=21.0
Q ss_pred CcceEEEEeeeeeeccccCc-----CceeEEe
Q psy3181 251 PVGRLNITVVQILSIGRYLV-----PTYQIVS 277 (349)
Q Consensus 251 ~~g~lsiti~~~~~~~~~~~-----~~~~~~~ 277 (349)
+.|+|.|+|.++.-...... ||+++.+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L 43 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGM 43 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEE
Confidence 67999999999987766433 5888865
No 249
>PLN02223 phosphoinositide phospholipase C
Probab=21.44 E-value=1.3e+02 Score=32.00 Aligned_cols=63 Identities=21% Similarity=0.115 Sum_probs=43.2
Q ss_pred cceEEEEeeeeeec--------cccCc--CceeEEe-ceee-----c--------CChhhHhh----hhhhhheeeeeee
Q psy3181 252 VGRLNITVVQILSI--------GRYLV--PTYQIVS-GAYY-----R--------SSRSEQEV----CSCKFLALIKLDI 303 (349)
Q Consensus 252 ~g~lsiti~~~~~~--------~~~~~--~~~~~~~-~~~~-----~--------~~~~~~~~----~~~~~~~~~~~~~ 303 (349)
...|+|+|+..--| +.+.. ||+++.+ |.-. + ||. |||- +.|+.+|++.+++
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPv-Wne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPT-WGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCce-ecceeEEEEEccCceEEEEEE
Confidence 35799999887544 33444 5777766 2211 1 788 9986 4566699999999
Q ss_pred eecccccccCcc
Q psy3181 304 LDTYLFSANKPI 315 (349)
Q Consensus 304 ~~~~~~~~~~~~ 315 (349)
+|.-.++.++-+
T Consensus 487 ~D~D~~~~ddfi 498 (537)
T PLN02223 487 YDYEVSTADAFC 498 (537)
T ss_pred EecCCCCCCcEE
Confidence 998777666644
No 250
>PLN02964 phosphatidylserine decarboxylase
Probab=20.53 E-value=98 Score=33.64 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=48.1
Q ss_pred CCCcceEEEEeeeeeeccccCcCceeEEe-cee-ec--------CChhhHhhhhhhh----heeeeeeeeecccccccCc
Q psy3181 249 QNPVGRLNITVVQILSIGRYLVPTYQIVS-GAY-YR--------SSRSEQEVCSCKF----LALIKLDILDTYLFSANKP 314 (349)
Q Consensus 249 ~~~~g~lsiti~~~~~~~~~~~~~~~~~~-~~~-~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 314 (349)
+-.+|++.||++++..- +.=|++.|.+ |-- |+ ||= ||+--.-.+ .....+-|+|+-.|+.++.
T Consensus 50 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~l 126 (644)
T PLN02964 50 EDFSGIALLTLVGAEMK--FKDKWLACVSFGEQTFRTETSDSTDKPV-WNSEKKLLLEKNGPHLARISVFETNRLSKNTL 126 (644)
T ss_pred ccccCeEEEEeehhhhc--cCCcEEEEEEecceeeeeccccccCCcc-cchhhceEeccCCcceEEEEEEecCCCCHHHh
Confidence 45789999999999821 1238998887 665 76 777 887332222 4445788999999999998
Q ss_pred cchh
Q psy3181 315 IPLL 318 (349)
Q Consensus 315 ~~~~ 318 (349)
+.+-
T Consensus 127 v~~~ 130 (644)
T PLN02964 127 VGYC 130 (644)
T ss_pred hhhe
Confidence 8543
Done!