RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3181
(349 letters)
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 94.3 bits (235), Expect = 6e-24
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 38 ASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNK 97
SS P G L + +V AK +++ + MDPYV+L +++ G P WN+
Sbjct: 1 GSSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNE 60
Query: 98 EVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDK 157
+ +G T + +I+D+ T D+ + A IP+ ++G + + E K
Sbjct: 61 TFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD-EEYK 119
Query: 158 EGMINLVLSYT 168
G I + LS+
Sbjct: 120 -GEIWVALSFK 129
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 73.8 bits (181), Expect = 6e-16
Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 10/165 (6%)
Query: 10 NHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMD 69
+H+ +H + + L Q S +L ITV+ AKL +N
Sbjct: 2 HHHHHHSSGREN---LYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPS 58
Query: 70 PYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWA 129
PYV + V +T + P+W + ++ V+ ++ ++ + D L+ A
Sbjct: 59 PYVEVTVDGQSKKTEKCNNTNS-PKWK-QPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTA 116
Query: 130 KIPIPS--SVMKGETHEDWFPL---SGKQGEDKEGMINLVLSYTV 169
+ I + E L K+ + G +++ L
Sbjct: 117 ALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 161
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 70.8 bits (174), Expect = 3e-15
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 36 STASSLIQNPVGRLNITVVQAKLVKNYGLVTK-----MDPYVRLRVGHCVYETHTDPSGG 90
S+ SS VG L + V++A L+ DP+ L +G+ +THT
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAA-----DLLAADFSGKSDPFCLLELGNDRLQTHTVY--- 53
Query: 91 K--FPRWNKEVFCLLPQGVTS-IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWF 147
K P WN +VF + + + + ++DE + + IP+ S+ G+ + +
Sbjct: 54 KNLNPEWN-KVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPL-LSIRDGQPN--CY 109
Query: 148 PLSGKQGEDKE-GMINLVLSY 167
L K E G+I L +
Sbjct: 110 VLKNKDLEQAFKGVIYLEMDL 130
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 70.0 bits (171), Expect = 1e-14
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 22/147 (14%)
Query: 36 STASSLIQNPVGRLNITVVQAK----------LVKNYGLVTKMDPYVRLRVGHC-VYETH 84
+ SS G L + + +A +DPY+ + V V +T
Sbjct: 18 GSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTS 77
Query: 85 TDPSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIP---IPSSVMKGE 141
T P +N E FC + L ++ E D +A + + + +
Sbjct: 78 TKQ-KTNKPTYN-EEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASD 135
Query: 142 THEDWFPLSGKQGEDKEGMINLVLSYT 168
T E W L + EG + +V++ T
Sbjct: 136 TFEGWVDL------EPEGKVFVVITLT 156
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 68.6 bits (168), Expect = 2e-14
Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCL---- 102
G L + V A + K DP V + +T + P WN E+
Sbjct: 7 GMLRVIVESASNIPK-TKFGKPDPIVSVIFKDEKKKTKKVDN-ELNPVWN-EILEFDLRG 63
Query: 103 LPQGVTS-IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWF---PLSGKQGEDKE 158
+P +S + + + D + ++LI A + + + ++ + L ++G+D
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTATVAL-KDLTGDQSRSLPYKLISLLNEKGQDTG 122
Query: 159 GMINLVLSYT 168
I+LV+ Y
Sbjct: 123 ATIDLVIGYD 132
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 67.9 bits (166), Expect = 4e-14
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 23/138 (16%)
Query: 45 PVGRLNITVVQAK-----------LVKNYGLVTKMDPYVRLRVGH-CVYETHTDPSGGKF 92
G L I + +A V +DPY+ L V + +T T
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS- 62
Query: 93 PRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGE--THEDWFPLS 150
P W+ + F I L ++ + D+ +A I +++ EDW L
Sbjct: 63 PAWH-DEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQF-EELLQNGSRHFEDWIDL- 119
Query: 151 GKQGEDKEGMINLVLSYT 168
+ EG + +++ +
Sbjct: 120 -----EPEGKVYVIIDLS 132
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 62.9 bits (153), Expect = 2e-12
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 36 STASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRW 95
+ +++ITVV A+ ++ DPYV ++VG T T G P W
Sbjct: 6 QSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVW 64
Query: 96 NKEVFCLLPQGVTSIYLEIYDE-----------CSFTMDELIAWAKIPIPSSVMKGETHE 144
+ I + + DE D+ + I + ++
Sbjct: 65 EENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV-RTLSGEMDV- 122
Query: 145 DWFPLSGKQGEDKE-GMINLVLSYTV 169
W+ L + + G I L +S +
Sbjct: 123 -WYNLDKRTDKSAVSGAIRLHISVEI 147
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 58.9 bits (143), Expect = 4e-11
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 47 GRLNITVVQAK-LVKNYG--LVTKMDPYVRLRVG---HCVYETHTDPSGGKFPRWNKEVF 100
+ + V++A + K ++ DPYV L + T + P WN E F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-INPVWN-ETF 60
Query: 101 CLLPQGVTS--IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKE 158
+ + + + D + MDE + A + SS+ GE E F + E
Sbjct: 61 EFILDPNQENVLEITLMDAN-YVMDETLGTATFTV-SSMKVGEKKEVPFIFNQV----TE 114
Query: 159 GMINLVLSYTVS 170
++ + L S
Sbjct: 115 MVLEMSLEVASS 126
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 55.7 bits (134), Expect = 1e-09
Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 29/147 (19%)
Query: 41 LIQNPVGRLNITVVQAKLVKNYGLVTK-----MDPYVRLRVGHCV------YETHTDPSG 89
L + + + V+ GL K DPYVR+ + + +T T
Sbjct: 2 LHNDDTRVVRVKVIAGI-----GLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-- 54
Query: 90 GK--FPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHED-- 145
K P+WN+E+ + I E++DE T D+ + +P+ + +
Sbjct: 55 -KSLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPL-YPLPTENPRMERP 112
Query: 146 ----WFPLSGKQGEDKE-GMINLVLSY 167
F L + + + G + L ++Y
Sbjct: 113 YTFKDFVLHPRSHKSRVKGYLRLKMTY 139
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 54.8 bits (132), Expect = 2e-09
Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 29/145 (20%)
Query: 43 QNPVGRLNITVVQAKLVKNYGLVTK-----MDPYVRLRVGH------CVYETHTDPSGGK 91
+ + + V+ GL K DPYVR+ + +T T K
Sbjct: 16 EENSRIVRVRVIAGI-----GLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK---K 67
Query: 92 --FPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHED---- 145
P+WN+E+ + + E++DE T D+ + +P+ + +
Sbjct: 68 SLNPKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPL-YPLPTENPRLERPYT 126
Query: 146 --WFPLSGKQGEDKE-GMINLVLSY 167
F L + + + G + L ++Y
Sbjct: 127 FKDFVLHPRSHKSRVKGYLRLKMTY 151
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 51.9 bits (124), Expect = 1e-08
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCL-LPQ 105
L + V +AK G K + YV L+V + T G P W + F + +
Sbjct: 5 SLLCVGVKKAKFD---GAQEKFNTYVTLKVQNVKSTTIA--VRGSQPSWE-QDFMFEINR 58
Query: 106 GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG--ETHEDWFPLSGKQGEDKEGMINL 163
+ +E++++ D ++ IP+ ++ + E +W L Q + I
Sbjct: 59 LDLGLTVEVWNKGLIW-DTMVGTVWIPL-RTIRQSNEEGPGEWLTLD-SQAIMADSEICG 115
Query: 164 VLSYT 168
T
Sbjct: 116 TKDPT 120
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 51.9 bits (124), Expect = 2e-08
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 8/123 (6%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG 106
L + V +AK K + YV L+V + T G P W ++ + +
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIA--VRGSQPSWEQDFMFEINRL 68
Query: 107 VTSIYLEIYDECSFTMDELIAWAKIPIPS-SVMKGETHEDWFPLSGKQGEDKEGMINLVL 165
+ +E++++ D ++ IP+ + E +W L Q + I
Sbjct: 69 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD-SQAIMADSEICGTK 126
Query: 166 SYT 168
T
Sbjct: 127 DPT 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 64/422 (15%), Positives = 121/422 (28%), Gaps = 155/422 (36%)
Query: 1 FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQNPVGRLN----ITVVQA 56
+L N+ H + + T L EL Y TA + + P + + V
Sbjct: 95 YLEGNDI---HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 57 KLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTSIYL---- 112
+ + GG QG T Y
Sbjct: 152 GNAQLVAIF-----------------------GG--------------QGNTDDYFEELR 174
Query: 113 EIYDECSFTMDELIAWAK---IPIPSSVMKGETH-------EDWFPLSGKQGEDKEGMIN 162
++Y + +LI ++ + + + E +W + +
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL-----ENPSNTPDKD 229
Query: 163 LVLSYTVSF-FFFLLLLENSISYLEITKHPLYAAKVFLGALPSDFLRPNNSPLSNHNSNH 221
+LS +S ++ L + Y + AK+ LG P + LR + H+
Sbjct: 230 YLLSIPISCPLIGVIQLAH---Y-------VVTAKL-LGFTPGE-LRSYLKGATGHSQ-- 275
Query: 222 LTDLDQQTALALQNELAGAYSTAGSLIQN-------------------PVGRLNITVVQI 262
L TA+A +A + S + P L ++++
Sbjct: 276 --GL--VTAVA----IAET-DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 263 LSIGRYLVPTYQI-VSGAYYRSSRSE-----QEVCSCK------FLALI----------- 299
VP+ + +S ++ + + S ++L+
Sbjct: 327 SLENNEGVPSPMLSISNL----TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 300 --KLDILDTYLFSANKP-------IPLLKKFKIRTRSLFLQI---FGIDKVRHSRYVPLL 347
L L+ L A P IP ++ K++ + FL + F HS LL
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVASPF------HS---HLL 432
Query: 348 GE 349
Sbjct: 433 VP 434
Score = 35.8 bits (82), Expect = 0.021
Identities = 32/178 (17%), Positives = 50/178 (28%), Gaps = 68/178 (38%)
Query: 14 NHQTDLDQQTALALQNE-----LAGAYSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKM 68
N +Q ++L N ++G SL YGL
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSG---PPQSL--------------------YGLNL-- 391
Query: 69 DPYVRLRVGHCVYETHTDPSGGKFP-RWNKEVF--CLLPQGVT----SIYLE-------- 113
LR + D S F R K F LP V S L
Sbjct: 392 ----TLRKAKA--PSGLDQSRIPFSER--KLKFSNRFLP--VASPFHSHLLVPASDLINK 441
Query: 114 --IYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTV 169
+ + SF ++ +IP+ + D L G E +++ ++ V
Sbjct: 442 DLVKNNVSFNAKDI----QIPVYDT-------FDGSDLRVLSGSISERIVDCIIRLPV 488
Score = 30.0 bits (67), Expect = 1.6
Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 40/161 (24%)
Query: 153 QGEDKEGM-INLVLSYTVSF----------FFFLLLLENSISYLEITKH-PLYAAKVFLG 200
QG ++GM ++L Y S F SI L+I + P+ F G
Sbjct: 1624 QGSQEQGMGMDL---YKTSKAAQDVWNRADNHFKDTYGFSI--LDIVINNPVNLTIHF-G 1677
Query: 201 ALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQNELAGAYSTAGSLI-QNPVGRLNITV 259
+R N S + T +D + + +ST S ++ G L+ T
Sbjct: 1678 GEKGKRIRENYSAMIFE-----TIVDGKLKTEKIFKEINEHST--SYTFRSEKGLLSATQ 1730
Query: 260 V-Q--ILSIGRYLVPTYQIVSGAYYRSSRSEQEVCSCKFLA 297
Q + ++ A + +S+ + + A
Sbjct: 1731 FTQPALT-----------LMEKAAFEDLKSKGLIPADATFA 1760
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 45.1 bits (107), Expect = 3e-06
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 26/136 (19%)
Query: 48 RLNITVVQAKLVKNYGLVTKM------DPYVRLRVGHC--VYETHTDPSGGK--FPRWNK 97
++ +TV+ AK L K DP+ ++ V + T T P+WN
Sbjct: 6 KIRLTVLCAK-----NLA-KKDFFRLPDPFAKIVVDGSGQCHSTDTVK---NTLDPKWN- 55
Query: 98 EVFCLLPQGVTSIYLEIYDECSFTMDELIAW-AKIPIPSSVMKGETHEDWFPL-----SG 151
+ + L SI + +++ + + + + S+ + + L +
Sbjct: 56 QHYDLYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115
Query: 152 KQGEDKEGMINLVLSY 167
+ G I + L
Sbjct: 116 SDTDAVRGQIVVSLQT 131
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 46.5 bits (109), Expect = 1e-05
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 43 QNPVGRLNITVVQAKLVKNYG---LVTKMDPYVRLRVGHCV---YETHTDPSGGKFPRWN 96
+ + V++A V ++ DPYV L + T + P WN
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWN 72
Query: 97 KEVFC--LLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146
E F L P + + + D DE + A + S + + +
Sbjct: 73 -ETFEFILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPF 122
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 43.1 bits (102), Expect = 2e-05
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 27/125 (21%)
Query: 47 GRLNITVVQAKLVKNYGLVTKM------DPYVRLRV-----GHCVYETHTDPSGGK--FP 93
+L++TV AK L+ M DPYV+L++ +T T P
Sbjct: 16 EKLHVTVRDAK-----NLI-PMDPNGLSDPYVKLKLIPDPKNESKQKTKTIR---STLNP 66
Query: 94 RWNKEVFCLLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL-S 150
+WN+ L L + +D T ++ + + S +MK W+ L +
Sbjct: 67 QWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGV-SELMKMPASG-WYKLLN 124
Query: 151 GKQGE 155
++GE
Sbjct: 125 QEEGE 129
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 41.6 bits (98), Expect = 6e-05
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 26/129 (20%)
Query: 47 GRLNITVVQAKLVKNYGLVTKM------DPYVRLRV-----GHCVYETHTDPSGGK--FP 93
L + V AK LV M DPYV+L++ +T T P
Sbjct: 31 EVLIVVVRDAK-----NLV-PMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK---CSLNP 81
Query: 94 RWNKEVFCLLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151
WN+ L + L + +D + ++ + I S + K + WF L
Sbjct: 82 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGV-DGWFKLLS 139
Query: 152 KQGEDKEGM 160
++ + +
Sbjct: 140 QEEGEYFNV 148
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 40.9 bits (96), Expect = 1e-04
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV------GHCVYETHTDPSGGKFPRWNKEVF 100
+ I ++Q + +R+ V C++ T +N EVF
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFN-EVF 100
Query: 101 CL-LPQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149
+ + ++ +++ ++E + A+I + GE W+ L
Sbjct: 101 WVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 40.2 bits (94), Expect = 5e-04
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHTDPSGGKFPRWNKEVFC-- 101
+L + ++QA + + DPYV++ + +ET P +N E F
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFN-EQFTFK 76
Query: 102 LLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEG 159
+ + L + YD F+ ++I K+P+ ++V G E+W L + E++E
Sbjct: 77 VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPM-NTVDFGHVTEEWRDLQSAEKEEQEK 135
Query: 160 MINLVLS 166
+ ++ S
Sbjct: 136 LGDICFS 142
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 38.5 bits (90), Expect = 7e-04
Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 28/129 (21%)
Query: 47 GRLNITVVQAKLVKNYGLVTK-----MDPYVRLRV---GHCVYETHTDPSGGKF------ 92
G L I ++QA+ LV + DP+V++ + V + K
Sbjct: 18 GNLIIHILQAR-----NLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ 72
Query: 93 ----PRWNKE-VFCLLPQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHE 144
P WN+ ++ + ++ + ++D F+ ++ + I + SS +
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL-SSTSHLDNTP 131
Query: 145 DWFPLSGKQ 153
W+PL +
Sbjct: 132 RWYPLKEQT 140
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 39.4 bits (92), Expect = 0.001
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 9/129 (6%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHTDPSGGKFPRWNKE-VFCL 102
+L + ++QA + DPYV++ + ++T P +N+ F +
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSV 78
Query: 103 LPQGVT--SIYLEIYDECSFTMDELIAWAKIPIPSSVM-KGETHEDWFPLSGKQGED-KE 158
+ ++ +YD F+ +LI + + + W + E
Sbjct: 79 PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADL 138
Query: 159 GMINLVLSY 167
G +N L Y
Sbjct: 139 GELNFSLCY 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 177 LLENSISYLE-ITK-HPLYAAKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQ 234
L+ Y I P Y V A+ DFL L S + TDL + +AL
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLV--NAI-LDFLPKIEENL--ICSKY-TDLLR---IALM 573
Query: 235 NELAGAYSTAGSLIQ 249
E + A +Q
Sbjct: 574 AEDEAIFEEAHKQVQ 588
Score = 32.1 bits (72), Expect = 0.29
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 1 FLRPNNSLSNHNSNHQTDLDQQTALALQNELAGAYSTASSLIQ 43
FL P + S + TDL + +AL E + A +Q
Sbjct: 551 FL-PKIEENLICSKY-TDLLR---IALMAEDEAIFEEAHKQVQ 588
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 37.2 bits (85), Expect = 0.007
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 10/85 (11%)
Query: 69 DPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVTS---IYLEIYDECSFTMDEL 125
D Y+++ G + T + PRW + +++ + ++++D D+L
Sbjct: 415 DAYLKVFFGGQEFRTGVVWNN-NNPRWT-DKMDFENVLLSTGGPLRVQVWDADYGWDDDL 472
Query: 126 IAWAKIPIPSSVMKGETHEDWFPLS 150
+ S HE L+
Sbjct: 473 LGSCDRSPHSGF-----HEVTCELN 492
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 33.9 bits (78), Expect = 0.025
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 23/128 (17%)
Query: 47 GRLNITVVQAK-LVKNYGLVTKMDPYVRLRVGHCVYETHTDPS-GGKF----------PR 94
L + V + L + +PYV+ + D S GK P
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYL-------LPDKSRQGKRKTSIKRDTVNPL 75
Query: 95 WNKE-VFCLLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151
+++ + + + L+ + F + + A+I + S + + PL G
Sbjct: 76 YDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM-DSWKLDKKLDHCLPLHG 134
Query: 152 KQGEDKEG 159
K + EG
Sbjct: 135 KISAESEG 142
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 33.4 bits (76), Expect = 0.040
Identities = 10/137 (7%), Positives = 44/137 (32%), Gaps = 9/137 (6%)
Query: 35 YSTASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPR 94
+ ++ + + L + + L + D ++ + + +
Sbjct: 9 HHSSGLVPRGSHMALIVHLKTVS-----ELRGRADRIAKVTFRGQSFYSRVLENCEDVAD 63
Query: 95 WNKEVFCLL---PQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151
+++ + + ++I++ ++LI ++ + V++ E L
Sbjct: 64 FDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVL-QKVVEENRVEVSDTLID 122
Query: 152 KQGEDKEGMINLVLSYT 168
+ +++ + Y
Sbjct: 123 DNNAIIKTSLSMEVRYQ 139
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 33.3 bits (75), Expect = 0.11
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 68 MDPYVRLRVGHC-----VYETHTDPSGGKFPRWNKE-VFCLLPQGVTSIYLEIYDECSFT 121
+DP V + + +T + G PRW+ E F + + + + D S +
Sbjct: 520 VDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSS 579
Query: 122 MDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED 156
++ I + IP +S+ +G H L K G+
Sbjct: 580 KNDFIGQSTIPW-NSLKQGYRH---VHLLSKNGDQ 610
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 32.0 bits (73), Expect = 0.12
Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 47 GRLNITVVQAKLVKNYGLVTKM----DPYVRL-----RVGHCVYETHTDPSGGKFPRWNK 97
L + +++ K GL++K DPYV++ +T T P + P +++
Sbjct: 27 RVLLLHIIEGK-----GLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDC-RDPAFHE 80
Query: 98 E-VFCLLPQGV-TSIYLEIYDECSFT-MDELIAWAKIPIPSSVMKGETHEDWFPLSGKQ 153
F + + + + +++ S + LI + S + + W+ L G+
Sbjct: 81 HFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 31.5 bits (72), Expect = 0.18
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGK----------FPRWN 96
+ + +++A+ +K + DPYV+ V+ + D K P +N
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVK------VWLMYKDKRVEKKKTVTKKRNLNPIFN 69
Query: 97 KEVFCLLPQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWF 147
+ +P T+I + + D+ + +++I + S H W
Sbjct: 70 ESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS-WKSGPGEVKH--WK 120
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 30.8 bits (70), Expect = 0.34
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 32/128 (25%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGK----------FPRWN 96
G+L + +++AK +K + DPYV+ ++ K P +N
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVK------IHLMQNGKRLKKKKTTIKKNTLNPYYN 78
Query: 97 KEVFCLLPQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETH---------- 143
+ +P + + + D ++ I + +S H
Sbjct: 79 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG-YNSTGAELRHWSDMLANPRR 137
Query: 144 --EDWFPL 149
W L
Sbjct: 138 PIAQWHTL 145
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.40
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 33/57 (57%)
Query: 179 ENSISYLEIT-KHPLYAAKVFLGALPSDFLRPNNSPLSNHNSNHLTDLDQQTALALQ 234
+ ++ L+ + K LYA +++P ALA++
Sbjct: 19 KQALKKLQASLK--LYA--------------DDSAP----------------ALAIK 43
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 30.6 bits (70), Expect = 0.70
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 23/74 (31%)
Query: 218 NSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQIL----------SIGR 267
N HL L Q G L++NP N T + + +
Sbjct: 125 NWEHLELLKFQKE---------RKGWKGILVKNP----NCTAAIMSMPIKPLIEIATKSK 171
Query: 268 YLVPTYQIVSGAYY 281
++ T Q VSGA Y
Sbjct: 172 IIITTLQAVSGAGY 185
>3n4i_B BLIP, beta-lactamase inhibitory protein; beta-lactamase inhibitor
protein, protein-PR complex, SHV-1, hydrolase; 1.56A
{Streptomyces clavuligerus} PDB: 1jtg_B 2b5r_C 2g2w_B
3e2k_C 3e2l_C* 3gmu_B 2g2u_B 3c4p_B 3c7v_B 1s0w_C 3c7u_B
3c4o_B 1xxm_C
Length = 165
Score = 29.2 bits (64), Expect = 1.2
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 78 HCVYETHTD---PSGGKFPR-------WNKEVFCLLPQGVTSIYLEIYDECSFTMDELIA 127
HC D + F +K LL ++ L +++ + M
Sbjct: 41 HCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQV 100
Query: 128 WAKIPIPSSVMKGETHEDWFPLSG 151
A + S E + + +G
Sbjct: 101 LATVGQGSCTTWSEYYPAYPSTAG 124
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 29.2 bits (66), Expect = 1.2
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 32/129 (24%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKF----------PRWN 96
L + V++A+ + + DPYV+ V H K +N
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVK------VNLYHAKKRISKKKTHVKKCTPNAVFN 83
Query: 97 KEVFCLLPQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETH---------- 143
+ +P S+ + D + +E+I + ++ G H
Sbjct: 84 ELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLG-ATAEGSGGGHWKEICDFPRR 142
Query: 144 --EDWFPLS 150
W L
Sbjct: 143 QIAKWHMLC 151
>3gmv_X Beta-lactamase inhibitory protein BLIP-I; 2-layer alpha/beta
sandwich, protein binding; HET: TAM; 1.80A {Streptomyces
exfoliatus} PDB: 3gmw_B
Length = 156
Score = 29.1 bits (64), Expect = 1.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 95 WNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151
W+K L S+ L Y+ + M E WA +P S V +GE++ +W +G
Sbjct: 64 WSKRNEYLYKAKTPSVKLSHYNRTALGMTEAQLWAAVPKDSCVSQGESYPNWPAKTG 120
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 29.6 bits (67), Expect = 1.5
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 19/73 (26%)
Query: 218 NSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQIL-----------SIG 266
N H+ ++ + + ++ G +I N + ++ I
Sbjct: 141 NPEHIDVVENKV----KQAVSKGGKKPGFIICIS----NCSTAGLVAPLKPLVEKFGPID 192
Query: 267 RYLVPTYQIVSGA 279
T Q +SGA
Sbjct: 193 ALTTTTLQAISGA 205
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 28.9 bits (65), Expect = 1.6
Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 22/116 (18%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKF----------PRWN 96
G L + +++ + DP+V+ ++ K P +N
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVK------LWLKPDMGKKAKHKTQIKKKTLNPEFN 90
Query: 97 KE-VFCLLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149
+E + + + L+I +D ++ I ++ S+ + H W+
Sbjct: 91 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG-ISAKGERLKH--WYEC 143
>3gmx_B BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A
{Streptomyces clavuligerus} PDB: 3gmy_A
Length = 154
Score = 28.7 bits (63), Expect = 1.9
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 95 WNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSG 151
+K L P ++ L Y++ M E WA +P + E + +W +G
Sbjct: 62 IHKRQMELFPAPKPTMRLATYNKTQTGMTEAQFWAAVPSDTCSALAEQYPNWPATNG 118
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 28.4 bits (62), Expect = 4.6
Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 18/100 (18%)
Query: 67 KMDPYVRLRVGHC-------VYETHTDPSGGKFPRWNKEVFCLLPQGVTS---IYLEIYD 116
++ YV + + ++T + G P ++++VF + + + + +
Sbjct: 666 QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725
Query: 117 ECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGED 156
E + I +P+ + G H PL +
Sbjct: 726 EN----GKFIGHRVMPL-DGIKPGYRH---VPLRNESNRP 757
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 28.1 bits (61), Expect = 5.0
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 67 KMDPYVRLRVGHCV------YETHTDPSGGKFPRWNKEVF----CLLPQGVTSIYLEIYD 116
K+ YV + + Y T T P W++E F +LP + S+ + ++
Sbjct: 741 KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT-LASLRIAAFE 799
Query: 117 ECSFTMDELIAWAKIPIPSSVMKGETH 143
E + + +P+ S++ G +
Sbjct: 800 EG----GKFVGHRILPV-SAIRSGYHY 821
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 27.9 bits (63), Expect = 5.1
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 23/72 (31%)
Query: 218 NSNHLTDLDQQTALALQNELAGAYSTAGSLIQNPVGRLNITVVQIL----------SIGR 267
N++HL ++ Q G++I NP N + + + +
Sbjct: 131 NADHLELIEIQRE---------KRGWDGAIITNP----NCSTICAVITLKPIMDKFGLEA 177
Query: 268 YLVPTYQIVSGA 279
+ T Q VSGA
Sbjct: 178 VFIATMQAVSGA 189
>3kby_A Putative uncharacterized protein; all helical, unknown funct; 1.80A
{Staphylococcus aureus}
Length = 145
Score = 27.4 bits (60), Expect = 5.2
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 182 ISYLEITKHPLYAAKVFLGALPSDFLRPN----NSPLS-NHNSNHLTDLDQQTALALQNE 236
I Y +P+ ++ ALP F + P S ++ N +T+ + ++ LQ
Sbjct: 41 IYYKNSIDNPIVDGACYILALPEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYL 100
Query: 237 LAGAYSTAGSLIQNPVG 253
+A A I P G
Sbjct: 101 VAAALEVTDVNIFKPSG 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,125,764
Number of extensions: 299783
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 45
Length of query: 349
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 255
Effective length of database: 4,077,219
Effective search space: 1039690845
Effective search space used: 1039690845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)