RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3181
(349 letters)
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 86.7 bits (214), Expect = 2e-21
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 36 STASSLIQNPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRW 95
S+ SS P G L + +V AK +++ + MDPYV+L +++ G P W
Sbjct: 2 SSGSS---GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEW 58
Query: 96 NKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE 155
N+ + +G T + +I+D+ T D+ + A IP+ ++G + + + E
Sbjct: 59 NETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV--KDE 116
Query: 156 DKEGMINLVLSYT 168
+ +G I + LS+
Sbjct: 117 EYKGEIWVALSFK 129
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 70.2 bits (171), Expect = 2e-15
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 44 NPVGRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLL 103
VG L + V++A + K DP+ L +G+ +THT P WNK +
Sbjct: 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPI 61
Query: 104 PQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKE-GMIN 162
+ + ++DE + + IP+ S+ G+ + + L K E G+I
Sbjct: 62 KDIHDVLEVTVFDEDGDKPPDFLGKVAIPL-LSIRDGQPN--CYVLKNKDLEQAFKGVIY 118
Query: 163 LVLSY 167
L +
Sbjct: 119 LEMDL 123
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 62.9 bits (152), Expect = 6e-13
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQG 106
+L ITV+ AKL +N PYV + V +T + P+W + + ++
Sbjct: 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN-TNSPKWKQPLTVIVTP- 63
Query: 107 VTSIYLEIYDECSFTMDELIAWAKIPIPSSV----MKGETHEDWFPLSG-KQGEDKEGMI 161
V+ ++ ++ + D L+ A + I ++ MK E L G K+ + G +
Sbjct: 64 VSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDL 123
Query: 162 NLVLSY 167
++ L
Sbjct: 124 SICLDG 129
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 62.4 bits (151), Expect = 9e-13
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 8/126 (6%)
Query: 47 GRLNITVVQAKLVKNYG---LVTKMDPYVRLRVGHCVYETHTDPSGGKFPR-WNKEVFCL 102
+ + V++A V ++ DPYV L + E F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 103 LPQGVTS--IYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGM 160
+ + + + D DE + A + SS+ GE E F + E
Sbjct: 63 ILDPNQENVLEITLMDANYVM-DETLGTATFTV-SSMKVGEKKEVPFIFNQVTEMVLEMS 120
Query: 161 INLVLS 166
+ + S
Sbjct: 121 LEVASS 126
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 59.4 bits (143), Expect = 1e-11
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 12/132 (9%)
Query: 49 LNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPSGGKFPRWNKEVFCLLPQGVT 108
L + V +AK K + YV L+V + T G P W ++ + +
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR--GSQPSWEQDFMFEINRLDL 58
Query: 109 SIYLEIYDECSFTMDELIAWAKIPIPSSVMKGE-THEDWFPLSGKQGEDKEGMINLVLSY 167
+ +E++++ D ++ IP+ + E +W L + +
Sbjct: 59 GLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICG----- 112
Query: 168 TVSFFFFLLLLE 179
T F +LL+
Sbjct: 113 TKDPTFHRILLD 124
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 55.5 bits (133), Expect = 3e-10
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPS----GGKFPRWNKEVFCL 102
L + V AK + DPYV+L++ + P WN+
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 103 LPQGV--TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL-SGKQGE 155
L + + +EI+D + ++ + I S ++ + WF L S ++GE
Sbjct: 75 LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI--SELQKAGVDGWFKLLSQEEGE 128
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 55.5 bits (133), Expect = 3e-10
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRV---GHCVYETHT--DPSGGKFPRWNKEVFC 101
+L + ++QA + + DPYV++ + +ET F
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93
Query: 102 LLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149
G ++ + +YD F+ ++I K+P+ ++V G E+W L
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM-NTVDFGHVTEEWRDL 140
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 50.9 bits (121), Expect = 9e-09
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 48 RLNITVVQAK--LVKNYGLVTKMDPYVR-----LRVGHCVYETHTDPSGGKFPRWNKE-V 99
RL + ++ + N + +DP V + +T + G PRW+ E
Sbjct: 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFE 64
Query: 100 FCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEG 159
F + + + + D S + ++ I + IP + L K G+
Sbjct: 65 FEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIP----WNSLKQGYRHVHLLSKNGDQHPS 120
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 48.2 bits (114), Expect = 8e-08
Identities = 17/113 (15%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPS----GGKFPRWNKE-VFC 101
+L +T++ AK + + +PYV++ + + + P+WN+ ++
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 102 LLPQGV---TSIYLEIYDECSFTMD--ELIAWAKIPIPSSVMKGETHEDWFPL 149
+ + + + ++D+ + E + I + ++++ E H W+ L
Sbjct: 74 PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH--WYKL 124
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 48.3 bits (114), Expect = 1e-07
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 19/136 (13%)
Query: 47 GRLNITVVQAKLVKNYGLVTK-----------MDPYVRLRVGHCVYETHTDPSGGKFPRW 95
G L I + +A +K + +DPY+ L V P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 96 NKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKG-ETHEDWFPLSGKQG 154
+ E + G I L ++ + D+ +A I + G EDW L
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL----- 119
Query: 155 EDKEGMINLVLSYTVS 170
+ EG + +++ + S
Sbjct: 120 -EPEGKVYVIIDLSGS 134
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 48.3 bits (114), Expect = 1e-07
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHC-----VYETHTDPSGGKFPRWNKEVFC 101
G L +T+++A +K L DPYV+ + +T + VF
Sbjct: 20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79
Query: 102 LLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE 155
+ P+ V ++ L I D +E+I ++ ++ G H W + +
Sbjct: 80 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREH--WAEMLANPRK 133
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 48.0 bits (113), Expect = 2e-07
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 24/126 (19%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVG--------------------HCVYETHTD 86
G L I ++QA+ + DP+V++ + V ++
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 87 PSGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDW 146
+ + L+ + ++ + ++D F+ ++ + I + SS + W
Sbjct: 78 EWNQTVIYKSISMEQLMKK---TLEVTVWDYDRFSSNDFLGEVLIDL-SSTSHLDNTPRW 133
Query: 147 FPLSGK 152
+PL +
Sbjct: 134 YPLKEQ 139
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 47.1 bits (111), Expect = 2e-07
Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTDPS----GGKFPRWNKEVFCL 102
G L + +++ + DP+V+L + + + + P +N+E F
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 103 LPQ---GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPLSGKQGE 155
+ S+ + ++D ++ I ++ I + GE + W+ + +
Sbjct: 75 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK---GERLKHWYECLKNKDK 127
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 47.1 bits (111), Expect = 4e-07
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 22/136 (16%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGH----CVYETHTDPSGGKFPRWNKE-VFC 101
G+L + +++AK +K + DPYV++ + + T P +N+ F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 102 LLPQGVTSIYLEI--YDECSFTMDELIAWAKIPIPSSVMKGETH------------EDWF 147
+ + + + + + D ++ I + +S H W
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY-NSTGAELRHWSDMLANPRRPIAQWH 143
Query: 148 PLSGKQGEDKEGMINL 163
L + E+ + M+ +
Sbjct: 144 TLQVE--EEVDAMLAV 157
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 45.9 bits (108), Expect = 7e-07
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVRLRVGHCVYETHTD----PSGGKFPRWNKEVFCL 102
L + V++A+ + + DPYV++ + H +N+
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 103 LPQ---GVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWFPL 149
+P S+ + D + +E+I + ++ G H W +
Sbjct: 75 IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA-TAEGSGGGH--WKEI 121
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 38.8 bits (89), Expect = 2e-04
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 47 GRLNITVVQAKLVKNYGLVTKMDPYVR---LRVGHCVYETHTDPSGGKFPRWNKEVFCLL 103
+L + ++QA + DPYV+ L ++T P +N+ +
Sbjct: 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSV 76
Query: 104 PQGV---TSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHED-WFPL 149
P ++ +YD F+ +LI + + + W +
Sbjct: 77 PLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDI 126
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 33.2 bits (75), Expect = 0.016
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 47 GRLNITVVQAK-LVKNYGLVTKMDPYVRLRV---GHCVYETHTDPSGGKFPRWNKEVFCL 102
+ + +A+ L DPY+++ + +T P +++
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFY 80
Query: 103 LP----QGVTSIYLEIYDECSFTMDELIAWAKIPIPS-SVMKGETHEDWFPLSGK 152
+++ I F+ D++I IP+ + +G+ + +SG
Sbjct: 81 GIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135
>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 68
Score = 26.2 bits (58), Expect = 1.4
Identities = 7/51 (13%), Positives = 11/51 (21%), Gaps = 5/51 (9%)
Query: 95 WNKEVFCLLPQGVTSIY--LEIYDECSFTMDELIAWAKIPIPSSVMKGETH 143
+F GV + D F + + M G
Sbjct: 10 VKGTIFA---GGVLRADEKIRPNDVVVFHNSRIFGVGLAAMSGKEMAGSEK 57
>d2g2ub1 d.98.1.1 (B:1-165) beta-lactamase-inhibitor protein, BLIP
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 165
Score = 27.3 bits (60), Expect = 1.7
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 78 HCVYETHTDPSGGKFPR-WNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSS 136
+ Y T S + +K LL ++ L +++ + M A + S
Sbjct: 50 YYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSC 109
Query: 137 VMKGETHEDW 146
E + +
Sbjct: 110 TTWSEYYPAY 119
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for
secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 25.7 bits (55), Expect = 5.1
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 88 SGGKFPRWNKEVFCLLPQGVTSIYLEIYDECSFTMDELIAWAKIPIPSSVMKGETHEDWF 147
+ RW K F L+ + + Y E EL+ + + +
Sbjct: 18 GKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRA 77
Query: 148 P 148
Sbjct: 78 F 78
>d2ex0a1 c.87.1.9 (A:26-412)
Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
multocida [TaxId: 747]}
Length = 387
Score = 25.6 bits (56), Expect = 9.8
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 125 LIAWAKIPIPSSVMKGETHEDWFPLSGKQGEDKEGMINLVLSYTVSF 171
+ ++ IP +++ + + L K E + ++ Y +
Sbjct: 33 IFGLSRFKIPDNIITQYQNIHFVEL--KDNRPTEALFTILDQYPGNI 77
>d2giya1 b.1.1.1 (A:218-394) Alphaherpesvirus glycoprotein E {Human
herpesvirus 1 [TaxId: 10298]}
Length = 177
Score = 25.2 bits (55), Expect = 10.0
Identities = 8/28 (28%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 109 SIYLEIYDECSFTMDELIAWAKIPIPSS 136
SI+ +D+ +++MD + W + +P+S
Sbjct: 28 SIHAIAHDDQTYSMD--VVWLRFDVPTS 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.402
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,234,387
Number of extensions: 56090
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 23
Length of query: 349
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,226,816
Effective search space: 322652608
Effective search space used: 322652608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)