BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3183
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant
Catalytic Subunit Of Camp-Dependent Protein Kinase
Complexed With The Peptide Inhibitor Pki(5-24) And
Adenosine
pdb|1JLU|E Chain E, Crystal Structure Of The Catalytic Subunit Of
Camp-dependent Protein Kinase Complexed With A
Phosphorylated Substrate Peptide And Detergent
pdb|1RE8|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 2
pdb|1REJ|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 1
pdb|1REK|A Chain A, Crystal Structure Of Camp-Dependent Protein Kinase
Complexed With Balanol Analog 8
pdb|2QVS|E Chain E, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
pdb|3FJQ|E Chain E, Crystal Structure Of Camp-Dependent Protein Kinase
Catalytic Subunit Alpha In Complex With Peptide
Inhibitor Pki Alpha (6-25)
pdb|3IDB|A Chain A, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3IDC|A Chain A, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
pdb|3O7L|D Chain D, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
pdb|3OW3|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|1ATP|E Chain E, 2.2 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
Mnatp And A Peptide Inhibitor
pdb|4DIN|A Chain A, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka
C-Subunit:amp-Pnp:mg2+ Complex
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
pdb|1J3H|B Chain B, Crystal Structure Of Apoenzyme Camp-Dependent Protein
Kinase Catalytic Subunit
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of
Camp-Dependent Protein Kinase
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
And Amp-Pnp
pdb|4DFZ|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit
Of Camp- Dependent Protein Kinase In Complex With Sp20
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp-
Dependent Protein Kinase Complexed With A Substrate
Peptide, Adp And Detergent
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl)amide
pdb|2C1B|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
(4r,2s)-5'-(4-(4-Chlorobenzyloxy)pyrrolidin-2-
Ylmethanesulfonyl)isoquinoline
pdb|2VO7|A Chain A, Structure Of Pka Complexed With 4-(4-Chlorobenzyl)-1-(7h-
Pyrrolo(2,3-D)pyrimidin-4-Yl)piperidin-4-Ylamine
pdb|3AG9|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
pdb|3AG9|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1012
Length = 351
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
pdb|2CPK|E Chain E, Crystal Structure Of The Catalytic Subunit Of Cyclic
Adenosine Monophosphate-Dependent Protein Kinase
pdb|4DG0|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20 And
Amp-Pnp
pdb|4DG2|E Chain E, Crystal Structure Of Myristoylated Wt Catalytic Subunit Of
Camp- Dependent Protein Kinase In Complex With Sp20
pdb|4DH1|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With Low Mg2+, Atp And Ip20
pdb|4DH3|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Atp And Ip20
pdb|4DH5|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Adp,
Phosphate, And Ip20
pdb|4DH7|A Chain A, Low Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20'
pdb|4DH8|A Chain A, Room Temperature X-ray Structure Of Camp Dependent Protein
Kinase A Catalytic Subunit With High Mg2+, Amp-pnp And
Ip20
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of
Camp-Dependent Protein Kinase And Adenosine Further
Defines Conformational Flexibility
pdb|1BX6|A Chain A, Crystal Structure Of The Potent Natural Product Inhibitor
Balanol In Complex With The Catalytic Subunit Of Camp-
Dependent Protein Kinase
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The
Catalytic Subunit Of Camp-Dependent Protein Kinase
pdb|3TNP|C Chain C, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|F Chain F, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNQ|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
pdb|1SYK|B Chain B, Crystal Structure Of E230q Mutant Of Camp-Dependent
Protein Kinase Reveals Unexpected Apoenzyme Conformation
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To
Hydroxyfasudil
Length = 351
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-670
pdb|3L9L|A Chain A, Crystal Structure Of Pka With Compound 36
pdb|3L9L|B Chain B, Crystal Structure Of Pka With Compound 36
pdb|3OOG|A Chain A, Human Camp-Dependent Protein Kinase In Complex With A
Small Fragment
pdb|3OVV|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OWP|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3OXT|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3P0M|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
pdb|3POO|A Chain A, Human Camp-Dependent Protein Kinase In Complex With An
Inhibitor
Length = 351
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic
Subunit Of Camp-Dependent Protein Kinase Complexed With
A Peptide Inhibitor And Detergent
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp
pdb|1Q62|A Chain A, Pka Double Mutant Model Of Pkb
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3AGL|B Chain B, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Arc-1039
pdb|3VQH|A Chain A, Bromine Sad Partially Resolves Multiple Binding Modes For
Pka Inhibitor H-89
Length = 351
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With
A- 443654
Length = 351
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 8
pdb|1XH5|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH6|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|1XH8|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|2GFC|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077)
pdb|1XH4|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
pdb|3BWJ|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase
Inhibitor Lead Compound Arc-1034
pdb|3KKV|A Chain A, Structure Of Pka With A Protein Kinase B-Selective
Inhibitor
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of
Camp-Dependent Protein Kinase And An Inhibitor Peptide
Displays An Open Conformation
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And
Potent Inhibitors For Akt: Synthesis And Sar Studies
Length = 337
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 231 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 287
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 288 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 320
>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In
Complex With Staurosporine
pdb|1Q8T|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase
(Pka) In Complex With Rho-Kinase Inhibitor Y-27632
pdb|1Q8U|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In
Complex With Rho-Kinase Inhibitor H-1152p
pdb|1SVE|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 1
pdb|1SVG|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 4
pdb|1VEB|A Chain A, Crystal Structure Of Protein Kinase A In Complex With
Azepane Derivative 5
pdb|3E8C|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|C Chain C, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|D Chain D, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8C|F Chain F, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp- Competitive Inhibitors
pdb|3E8E|A Chain A, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|B Chain B, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|E Chain E, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|I Chain I, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|L Chain L, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
pdb|3E8E|P Chain P, Crystal Structures Of The Kinase Domain Of Pka In Complex
With Atp-Competitive Inhibitors
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
pdb|4AE6|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit Calpha 2
Length = 343
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 237 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 293
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 294 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 326
>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 345
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 239 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 295
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 296 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 328
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|2F7E|E Chain E, Pka Complexed With
(S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6-
Yl-Pyridin-3-Yloxymethyl-Etylamine
pdb|2F7X|E Chain E, Protein Kinase A Bound To
(s)-2-(1h-indol-3-yl)-1-[5-((e)-2-
Pyridin-4-yl-vinyl)-pyridin-3-yloxymethyl]-ethylamine
pdb|2F7Z|E Chain E, Protein Kinase A Bound To
(R)-1-(1h-Indol-3-Ylmethyl)-2-(2-
Pyridin-4-Yl-[1,7]naphtyridin-5-Yloxy)-Ehylamine
pdb|2OH0|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
pdb|2OJF|E Chain E, Crystal Structure Of Protein Kinase A In Complex With
Pyridine-Pyrazolopyridine Based Inhibitors
Length = 351
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent
Protein Kinase With Unphosphorylated Turn Motif
Length = 371
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 265 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 321
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 322 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 354
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 265 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 321
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 322 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 354
>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
pdb|4AE9|B Chain B, Structure And Function Of The Human Sperm-specific Isoform
Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2
Length = 343
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 237 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 293
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 294 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 326
>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|B Chain B, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
pdb|3MVJ|E Chain E, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor
Complex
Length = 371
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 265 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT 321
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 322 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 354
>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H89 Protein
Kinase Inhibitor N-[2-
(4-Bromocinnamylamino)ethyl]-5-Isoquinoline
pdb|1YDR|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H7 Protein
Kinase Inhibitor 1-(5-
Isoquinolinesulfonyl)-2-Methylpiperazine
pdb|1YDS|E Chain E, Structure Of Camp-Dependent Protein Kinase,
Alpha-Catalytic Subunit In Complex With H8 Protein
Kinase Inhibitor [n-(2-Methylamino)ethyl]-5-
Isoquinolinesulfonamide
Length = 350
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
pdb|3DNE|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With
Pki-5-24
Length = 350
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
pdb|1CDK|B Chain B, Camp-Dependent Protein Kinase Catalytic Subunit
(E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein
Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24)
Isoelectric Variant Ca) And Mn2+ Adenylyl
Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c
Length = 350
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit
Of Camp- Dependent Protein Kinase Reveal Open And Closed
Conformations
Length = 350
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors
pdb|2UZU|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
pdb|2UZV|A Chain A, Pka Structures Of Indazole-pyridine Series Of Akt
Inhibitors
pdb|2UZW|E Chain E, Pka Structures Of Indazole-Pyridine Series Of Akt
Inhibitors
Length = 336
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DIK HKWF
Sbjct: 230 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFATT 286
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 287 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 319
>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol
Length = 351
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G + G+ DI HKWF
Sbjct: 245 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIXNHKWFATT 301
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 302 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 334
>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit
Of Camp- Dependent Protein Kinase
Length = 350
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + + G + G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKAFGNLKNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSNFD Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE 333
>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent
Protein Kinase
Length = 350
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
+Q Y I++ K+ FP H + + L++ L + +R G G+ DIK HKWF
Sbjct: 244 IQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLPNGVNDIKNHKWFATT 300
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAE 93
DW + + + P IP KGP DTSN D Y E
Sbjct: 301 DWIAIYQRKVEAPFIPKFKGPGDTSNADDYEEE 333
>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil
pdb|3TKU|B Chain B, Mrck Beta In Complex With Fasudil
Length = 433
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 1 MQTYNMIINVGIDKIPFPKHVT---RTAQSLIKAL-CKESPAERLGYQRGGIVDIKKHKW 56
++TY I+N ++ FP HVT A+ LI+ L C S RLG + GI D KKH +
Sbjct: 303 VETYGKIMNHE-ERFQFPSHVTDVSEEAKDLIQRLIC--SRERRLG--QNGIEDFKKHAF 357
Query: 57 FQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFD 88
F+G +W+ +RN L P IP + P+DTSNFD
Sbjct: 358 FEGLNWENIRN--LEAPYIPDVSSPSDTSNFD 387
>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1
pdb|3QFV|B Chain B, Mrck Beta In Complex With Tpca-1
Length = 415
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 1 MQTYNMIINVGIDKIPFPKHVT---RTAQSLIKAL-CKESPAERLGYQRGGIVDIKKHKW 56
++TY I+N ++ FP HVT A+ LI+ L C S RLG + GI D KKH +
Sbjct: 287 VETYGKIMNHE-ERFQFPSHVTDVSEEAKDLIQRLIC--SRERRLG--QNGIEDFKKHAF 341
Query: 57 FQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFD 88
F+G +W+ +RN L P IP + P+DTSNFD
Sbjct: 342 FEGLNWENIRN--LEAPYIPDVSSPSDTSNFD 371
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+T MI+ K+ P+ ++ AQSL++ L K +PA RLG G+ +IK+H +F D
Sbjct: 233 ETMTMILKA---KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTID 289
Query: 62 WDGLRNQTLTPPIIPVIKGPTDTSNFD 88
W+ L + + PP P P DT FD
Sbjct: 290 WNKLYRREIHPPFKPATGRPEDTFYFD 316
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+T +I+ K+ P+ ++ AQSL++AL K +PA RLG G +IK+H ++ D
Sbjct: 237 ETMTLILKA---KLGMPQFLSTEAQSLLRALFKRNPANRLGSGPDGAEEIKRHVFYSTID 293
Query: 62 WDGLRNQTLTPPIIPVIKGPTDTSNFD 88
W+ L + + PP P + P DT FD
Sbjct: 294 WNKLYRREIKPPFKPAVAQPDDTFYFD 320
>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha
(Mrck Alpha)
Length = 437
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Query: 1 MQTYNMIINVGIDKIPFPKHVT---RTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF 57
++TY I+N ++ FP VT A+ LI+ L S RLG + GI D KKH +F
Sbjct: 287 VETYGKIMNHK-ERFQFPTQVTDVSENAKDLIRRLIC-SREHRLG--QNGIEDFKKHPFF 342
Query: 58 QGFDWDGLRNQTLTPPIIPVIKGPTDTSNFD 88
G DWD +RN P IP + PTDTSNFD
Sbjct: 343 SGIDWDNIRN--CEAPYIPEVSSPTDTSNFD 371
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ +PK +++ A S+ K L + PA+RLG G D+++H +F+ DW+ L N+ + PP
Sbjct: 237 VSYPKSLSKEAVSICKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPF 296
Query: 75 IPVIKGPTDTSNFDRY 90
P + G NFD++
Sbjct: 297 KPKVCG-KGAENFDKF 311
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 14 KIPFPKHVTRTAQSLIKALCKESPAERLG-YQRGGIVDIKKHKWFQGFDWDGLRNQTLTP 72
+I P+ ++ A S++K+ + P ERLG + + G DI+ H +F+ DWD + + + P
Sbjct: 278 QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVP 337
Query: 73 PIIPVIKGPTDTSNFD-RYSAE--------NDIKGPTDTSNFDRYSAEN 112
P P I G NFD +++ E +DI D S F+ + N
Sbjct: 338 PFKPNISGEFGLDNFDSQFTNEPVQLXPDDDDIVRKIDQSEFEGFEYIN 386
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 12 IDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLT 71
+++I FP+ + A+SL+ L K+ P +RLG +I +H++F G W + + L+
Sbjct: 363 MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLS 422
Query: 72 PPIIPVIKGPTDTSNFD 88
PP P + TDT FD
Sbjct: 423 PPFKPQVTSETDTRYFD 439
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 12 IDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLT 71
+++I FP+ + A+SL+ L K+ P +RLG +I +H++F G W + + L+
Sbjct: 366 MEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLS 425
Query: 72 PPIIPVIKGPTDTSNFD 88
PP P + TDT FD
Sbjct: 426 PPFKPQVTSETDTRYFD 442
>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
pdb|2VD5|B Chain B, Structure Of Human Myotonic Dystrophy Protein Kinase In
Complex With The Bisindoylmaleide Inhibitor Bim Viii
Length = 412
Score = 56.2 bits (134), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 30 KALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFD 88
+ LC P RLG RGG D + H +F G DWDGLR+ PP P +G TDT NFD
Sbjct: 308 RLLC--PPETRLG--RGGAGDFRTHPFFFGLDWDGLRDS--VPPFTPDFEGATDTCNFD 360
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 3 TYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLG-YQRGGIVDIKKHKWFQGF 60
T + + V ++K I P+ ++ A S++K+ + P ERLG + + G DI+ H +F+
Sbjct: 219 TEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV 278
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFD-RYSAE--------NDIKGPTDTSNFDRYSAE 111
DWD + + + PP P I G NFD +++ E +DI D S F+ +
Sbjct: 279 DWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLXPDDDDIVRKIDQSEFEGFEYI 338
Query: 112 N 112
N
Sbjct: 339 N 339
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 3 TYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLG-YQRGGIVDIKKHKWFQGF 60
T + + V ++K I P+ ++ A S++K+ + P ERLG + + G DI+ H +F+
Sbjct: 223 TEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV 282
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFD-RYSAE--------NDIKGPTDTSNFDRYSAE 111
DWD + + + PP P I G NFD +++ E +DI D S F+ +
Sbjct: 283 DWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLXPDDDDIVRKIDQSEFEGFEYI 342
Query: 112 N 112
N
Sbjct: 343 N 343
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 14 KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPP 73
K+ P ++T+ A+ L+K L K + A RLG G +++ H +F+ +W+ L + + PP
Sbjct: 237 KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPP 296
Query: 74 IIPVIKGPTDTSNFD-RYSAENDIKGPTDTS 103
P+++ D S FD +++ + + P D++
Sbjct: 297 FKPLLQSEEDVSQFDSKFTRQTPVDSPDDST 327
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 14 KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPP 73
K+ P ++T+ A+ L+K L K + A RLG G +++ H +F+ +W+ L + + PP
Sbjct: 237 KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPP 296
Query: 74 IIPVIKGPTDTSNFD-RYSAENDIKGPTDTS 103
P+++ D S FD +++ + + P D++
Sbjct: 297 FKPLLQSEEDVSQFDSKFTRQTPVDSPDDST 327
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ + A+SL+ L K+ P +RLG +I +H++F G W + +
Sbjct: 221 ILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKK 280
Query: 70 LTPPIIPVIKGPTDTSNFD 88
L+PP P + TDT FD
Sbjct: 281 LSPPFKPQVTSETDTRYFD 299
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ + A+SL+ L K+ P +RLG +I +H++F G W + +
Sbjct: 222 ILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKK 281
Query: 70 LTPPIIPVIKGPTDTSNFD 88
L+PP P + TDT FD
Sbjct: 282 LSPPFKPQVTSETDTRYFD 300
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ + A+SL+ L K+ P +RLG +I +H++F G W + +
Sbjct: 223 ILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKK 282
Query: 70 LTPPIIPVIKGPTDTSNFD 88
L+PP P + TDT FD
Sbjct: 283 LSPPFKPQVTSETDTRYFD 301
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ +PK +++ A ++ K L + P +RLG G DIK+H +F+ DW+ L + + PP
Sbjct: 559 VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPY 618
Query: 75 IPVIKGPTDTSNFDRY 90
P G + NFDR+
Sbjct: 619 KPKASG-RNAENFDRF 633
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 1 MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 60
M+TY I+N ++ FP + L+ L ++RLG + G D+K H WF+
Sbjct: 209 MKTYEKILNA---ELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEV 265
Query: 61 DWDGLRNQTL-TPPIIPVIKGPTDTSNFDRYSAEN 94
W+ L ++ + TP P+ +G DTS FD+Y E+
Sbjct: 266 VWEKLLSRNIETPYEPPIQQGQGDTSQFDKYPEED 300
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 3 TYNMIINVGIDK-IPFPKHVTRTAQSLIKALCKESPAERLG-YQRGGIVDIKKHKWFQGF 60
T + + V ++K I P+ ++ A S++K+ + P ERLG + G DI+ H +F+
Sbjct: 234 TEDYLFQVILEKQIRIPRSMSVKAASVLKSFLNKDPKERLGCLPQTGFADIQGHPFFRNV 293
Query: 61 DWDGLRNQTLTPPIIPVIKGPTDTSNFD-RYSAE--------NDIKGPTDTSNFDRYSAE 111
DWD + + + PP P I G NFD +++ E +DI D S F+ +
Sbjct: 294 DWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNERVQLXPDDDDIVRKIDQSEFEGFEYI 353
Query: 112 N 112
N
Sbjct: 354 N 354
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+T MI+ K+ P+ ++ AQSL++ L K +PA RLG G+ +IK+H +F D
Sbjct: 234 ETMTMILKA---KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTID 290
Query: 62 WDGLRNQTLTPPIIP 76
W+ L + + PP P
Sbjct: 291 WNKLYRREIHPPFKP 305
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+T MI+ K+ P+ ++ AQSL++ L K +PA RLG G+ +IK+H +F D
Sbjct: 233 ETMTMILKA---KLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTID 289
Query: 62 WDGLRNQTLTPPIIP 76
W+ L + + PP P
Sbjct: 290 WNKLYRREIHPPFKP 304
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ +PK +++ A ++ K L + P +RLG G DIK+H +F+ DW+ L + + PP
Sbjct: 238 VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPY 297
Query: 75 IPVIKGPTDTSNFDRY 90
P G + NFDR+
Sbjct: 298 KPKACG-RNAENFDRF 312
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+ Y+ I+N + P ++T +A+ L++ L ++ +RLG + ++IK H +F +
Sbjct: 246 EMYDNILNKPLQLKP---NITNSARHLLEGLLQKDRTKRLG-AKDDFMEIKSHVFFSLIN 301
Query: 62 WDGLRNQTLTPPIIPVIKGPTDTSNFD 88
WD L N+ +TPP P + GP D +FD
Sbjct: 302 WDDLINKKITPPFNPNVSGPNDLRHFD 328
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ ++ A+SL+ L K+ P +RLG ++ +H++F +W + +
Sbjct: 217 ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 276
Query: 70 LTPPIIPVIKGPTDTSNF-DRYSAENDIKGPTDTSNFDRYSAENDVPPDETSNW 122
L PP P + DT F D ++A++ P DRY + + D+ +++
Sbjct: 277 LLPPFKPQVTSEVDTRYFDDEFTAQSITIXPP-----DRYDSLGLLELDQRTHF 325
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 16 PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPII 75
P+P+ ++ A+ LI+ L + P +RLG +IK+H +FQ +WD L + + P
Sbjct: 284 PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFK 343
Query: 76 PVIKGPTDTSNF 87
PVI+ D SNF
Sbjct: 344 PVIRDELDVSNF 355
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ ++ A+SL+ L K+ P +RLG ++ +H++F +W + +
Sbjct: 217 ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 276
Query: 70 LTPPIIPVIKGPTDTSNF-DRYSAENDIKGPTDTSNFDRYSAENDVPPDETSNW 122
L PP P + DT F D ++A++ P DRY + + D+ +++
Sbjct: 277 LLPPFKPQVTSEVDTRYFDDEFTAQSITITPP-----DRYDSLGLLELDQRTHF 325
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ ++ A+SL+ L K+ P +RLG ++ +H++F +W + +
Sbjct: 217 ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 276
Query: 70 LTPPIIPVIKGPTDTSNF-DRYSAENDIKGPTDTSNFDRYSAENDVPPDETSNW 122
L PP P + DT F D ++A++ P DRY + + D+ +++
Sbjct: 277 LLPPFKPQVTSEVDTRYFDDEFTAQSITITPP-----DRYDSLGLLELDQRTHF 325
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ ++ A+SL+ L K+ P +RLG ++ +H++F +W + +
Sbjct: 220 ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 279
Query: 70 LTPPIIPVIKGPTDTSNF-DRYSAENDIKGPTDTSNFDRYSAENDVPPDETSNW 122
L PP P + DT F D ++A++ P DRY + + D+ +++
Sbjct: 280 LLPPFKPQVTSEVDTRYFDDEFTAQSITITPP-----DRYDSLGLLELDQRTHF 328
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 9 NVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQ 68
++ +D +P+ + + A+ L+ L P +RLG RG DI++H F+ +W+ L +
Sbjct: 230 SIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGV-RG---DIRQHPLFREINWEELERK 285
Query: 69 TLTPPIIPVIKGPTDTSNFDR 89
+ PP P +K P D SNFD+
Sbjct: 286 EIDPPFRPKVKSPFDCSNFDK 306
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 9 NVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQ 68
++ +D +P+ + + A+ L+ L P +RLG RG DI++H F+ +W+ L +
Sbjct: 229 SIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGV-RG---DIRQHPLFREINWEELERK 284
Query: 69 TLTPPIIPVIKGPTDTSNFDR 89
+ PP P +K P D SNFD+
Sbjct: 285 EIDPPFRPKVKSPFDCSNFDK 305
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ ++ A+SL+ L K+ P +RLG ++ +H++F +W + +
Sbjct: 222 ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 281
Query: 70 LTPPIIPVIKGPTDTSNF-DRYSAENDIKGPTD 101
L PP P + DT F D ++A++ P D
Sbjct: 282 LLPPFKPQVTSEVDTRYFDDEFTAQSITITPPD 314
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG-YQRGGIVDIKKHKWFQGFDW 62
+ I+N D++ +P + A ++K+ ++P RLG +GG I +H +F+ DW
Sbjct: 233 FEAILN---DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDW 289
Query: 63 DGLRNQTLTPPIIPVIKGPTDTSNFD-RYSAENDIKGPTDTSNF 105
L ++ + PP P IK D SNFD + E + P D +
Sbjct: 290 AQLNHRQIEPPFRPRIKSREDVSNFDPDFIKEEPVLXPIDEGHL 333
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ ++ A+SL+ L K+ P +RLG ++ +H++F +W + +
Sbjct: 217 ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 276
Query: 70 LTPPIIPVIKGPTDTSNF-DRYSAENDIKGPTD 101
L PP P + DT F D ++A++ P D
Sbjct: 277 LLPPFKPQVTSEVDTRYFDDEFTAQSITITPPD 309
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 10 VGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ +++I FP+ ++ A+SL+ L K+ P +RLG ++ +H++F +W + +
Sbjct: 217 ILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKK 276
Query: 70 LTPPIIPVIKGPTDTSNF-DRYSAENDIKGPTD 101
L PP P + DT F D ++A++ P D
Sbjct: 277 LLPPFKPQVTSEVDTRYFDDEFTAQSITITPPD 309
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 44.7 bits (104), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ +P + ++ +AL ++ P +RLG++ G ++ H F+ W L LTPP
Sbjct: 410 VTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPF 469
Query: 75 IP 76
+P
Sbjct: 470 VP 471
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ +P + ++ +AL ++ P +RLG++ G ++ H F+ W L LTPP
Sbjct: 410 VTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPF 469
Query: 75 IP 76
+P
Sbjct: 470 VP 471
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ +P + ++ +AL ++ P +RLG++ G ++ H F+ W L LTPP
Sbjct: 410 VTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPF 469
Query: 75 IP 76
+P
Sbjct: 470 VP 471
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ +P + ++ +AL ++ P +RLG++ G ++ H F+ W L LTPP
Sbjct: 410 VTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPF 469
Query: 75 IP 76
+P
Sbjct: 470 VP 471
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 3 TYNMIINVGIDKIPFPK--HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG- 59
TY+ I++ + + FP+ +++ A++LI A + RLG R G+ +IK+H +F+
Sbjct: 287 TYSKIMDHK-NSLCFPEDAEISKHAKNLICAFLTDREV-RLG--RNGVEEIKQHPFFKND 342
Query: 60 -FDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYSAENDVP 115
++WD +R P++P + D+SNFD E+D KG +T + N +P
Sbjct: 343 QWNWDNIRET--AAPVVPELSSDIDSSNFD--DIEDD-KGDVETFPIPKAFVGNQLP 394
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 3 TYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG- 59
TY+ I+N + + FP +++ A++LI A + RLG R G+ +IK+H +F+
Sbjct: 286 TYSKIMNHK-NSLTFPDDNDISKEAKNLICAFLTDREV-RLG--RNGVEEIKRHLFFKND 341
Query: 60 -FDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYSAENDVP 115
+ W+ LR+ P++P + DTSNFD E D KG +T + N +P
Sbjct: 342 QWAWETLRDT--VAPVVPDLSSDIDTSNFD--DLEED-KGEEETFPIPKAFVGNQLP 393
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 3 TYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG- 59
TY+ I+N + + FP +++ A++LI A + RLG R G+ +IK+H +F+
Sbjct: 286 TYSKIMNHK-NSLTFPDDNDISKEAKNLICAFLTDREV-RLG--RNGVEEIKRHLFFKND 341
Query: 60 -FDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYSAENDVP 115
+ W+ LR+ P++P + DTSNFD E D KG +T + N +P
Sbjct: 342 QWAWETLRDT--VAPVVPDLSSDIDTSNFD--DLEED-KGEEETFPIPKAFVGNQLP 393
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 3 TYNMIINVGIDKIPFP--KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG- 59
TY+ I+N + + FP +++ A++LI A + RLG R G+ +IK+H +F+
Sbjct: 281 TYSKIMNHK-NSLTFPDDNDISKEAKNLICAFLTDREV-RLG--RNGVEEIKRHLFFKND 336
Query: 60 -FDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYSAENDVP 115
+ W+ LR+ P++P + DTSNFD E D KG +T + N +P
Sbjct: 337 QWAWETLRDT--VAPVVPDLSSDIDTSNFD--DLEED-KGEEETFPIPKAFVGNQLP 388
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 12 IDKIP--FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ ++P + + + A+SL L + PAERLG + G ++K+H F+ ++ L
Sbjct: 401 VKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGM 460
Query: 70 LTPPIIPVIKGP--TDTSNFDRYSAENDIK-GPTDTSNFDRYSAENDVP 115
L PP P + D + +++S ++ PTD + ++ A VP
Sbjct: 461 LEPPFKPDPQAIYCKDVLDIEQFSTVKGVELEPTDQDFYQKF-ATGSVP 508
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 12 IDKIP--FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQT 69
+ ++P + + + A+SL L + PAERLG + G ++K+H F+ ++ L
Sbjct: 401 VKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGM 460
Query: 70 LTPPIIPVIKGP--TDTSNFDRYSAENDIK-GPTDTSNFDRYSAENDVP 115
L PP P + D + +++S ++ PTD + ++ A VP
Sbjct: 461 LEPPFKPDPQAIYCKDVLDIEQFSTVKGVELEPTDQDFYQKF-ATGSVP 508
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ P + +SL++ L + RLG G ++K+ +F+ DW + Q PP+
Sbjct: 411 VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPL 470
Query: 75 IPVIKGPTDTSN-FDRYS-AENDIKG 98
IP +G + ++ FD S E D KG
Sbjct: 471 IPP-RGEVNAADAFDIGSFDEEDTKG 495
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ P + +SL++ L + RLG G ++K+ +F+ DW + Q PP+
Sbjct: 411 VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPL 470
Query: 75 IPVIKGPTDTSN-FDRYS-AENDIKG 98
IP +G + ++ FD S E D KG
Sbjct: 471 IPP-RGEVNAADAFDIGSFDEEDTKG 495
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ P + +SL++ L + RLG G ++K+ +F+ DW + Q PP+
Sbjct: 411 VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPL 470
Query: 75 IPVIKGPTDTSN-FDRYS-AENDIKG 98
IP +G + ++ FD S E D KG
Sbjct: 471 IPP-RGEVNAADAFDIGSFDEEDTKG 495
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ P + +SL++ L + RLG G ++K+ +F+ DW + Q PP+
Sbjct: 410 VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPL 469
Query: 75 IPVIKGPTDTSN-FDRYS-AENDIKG 98
IP +G + ++ FD S E D KG
Sbjct: 470 IPP-RGEVNAADAFDIGSFDEEDTKG 494
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 59
+TY I+ V + FP V AQ LI L + +P+ERL + + H W +
Sbjct: 228 ETYRRIVKVDLK---FPASVPTGAQDLISKLLRHNPSERL-----PLAQVSAHPWVRA 277
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 221 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 277
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 278 ENLHQQ--TPP 286
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 220 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 276
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 277 ENLHQQ--TPP 285
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 218 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 274
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 275 ENLHQQ--TPP 283
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 244 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 300
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 301 ENLHQQ--TPP 309
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 243 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 299
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 300 ENLHQQ--TPP 308
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 241 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 297
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 298 ENLHQQ--TPP 306
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 248 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 304
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 305 ENLHQQ--TPP 313
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 244 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 300
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 301 ENLHQQ--TPP 309
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 243 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 299
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 300 ENLHQQ--TPP 308
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 241 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 297
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 298 ENLHQQ--TPP 306
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 241 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 297
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 298 ENLHQQ--TPP 306
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 219 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 275
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 276 ENLHQQ--TPP 284
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 241 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 297
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 298 ENLHQQ--TPP 306
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 243 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 299
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 300 ENLHQQ--TPP 308
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 243 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 299
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 300 ENLHQQ--TPP 308
>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|C Chain C, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|D Chain D, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|E Chain E, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
pdb|4FR4|F Chain F, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
32a (Yank1)
Length = 384
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 15 IPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPI 74
+ +P ++ SL+K L + +P +R + D++ + +WD + + L P
Sbjct: 237 VTYPSAWSQEMVSLLKKLLEPNPDQRFSQ----LSDVQNFPYMNDINWDAVFQKRLIPGF 292
Query: 75 IP 76
IP
Sbjct: 293 IP 294
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 225 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 281
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 282 ENLHQQ--TPP 290
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 240 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 296
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 297 ENLHQQ--TPP 305
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRG-GIVDIKKHKWFQGFDW 62
+ II + D FP+ A+ L++ L +RLG + G +K H +F+ W
Sbjct: 240 FQKIIKLEYD---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 296
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 297 ENLHQQ--TPP 305
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 17 FPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDWDGLRNQTLTPP 73
FP+ A+ L++ L +RLG + G +K H +F+ W+ L Q TPP
Sbjct: 253 FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQ--TPP 308
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 17 FPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDWDGLRNQTLTPP 73
FP+ A+ L++ L +RLG + G +K H +F+ W+ L Q TPP
Sbjct: 253 FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQ--TPP 308
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR-GGIVDIKKHKWFQGFDW 62
+ II + D FP A+ L++ L +RLG + G +K H +F+ W
Sbjct: 246 FQKIIKLEYD---FPAAFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTW 302
Query: 63 DGLRNQTLTPP 73
+ L Q TPP
Sbjct: 303 ENLHQQ--TPP 311
>pdb|1MHZ|D Chain D, Methane Monooxygenase Hydroxylase
pdb|1MHY|D Chain D, Methane Monooxygenase Hydroxylase
Length = 521
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 54 HKWFQGFDWDGLRNQTLTP 72
HKW Q F+WD N+T P
Sbjct: 24 HKWLQSFNWDFKENRTKYP 42
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 59
+TY I V + FP VT A+ LI L K + ++RL + ++ +H W +
Sbjct: 217 ETYRRISRV---EFTFPDFVTEGARDLISRLLKHNASQRL-----TLAEVLEHPWIKA 266
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 59
+TY I V + FP VT A+ LI L K + ++RL + ++ +H W +
Sbjct: 217 ETYRRISRV---EFTFPDFVTEGARDLISRLLKHNASQRL-----TLAEVLEHPWIKA 266
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 50 DIKKHKWFQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYS 109
+I + W GFDW Q T +P IK D +N R S + I+ R +
Sbjct: 339 EIPERSWNTGFDWI-TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ-------LSRKT 390
Query: 110 AENDVPPDETSNWD 123
+ + P + ++WD
Sbjct: 391 FDTEYPKTKLTDWD 404
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 50 DIKKHKWFQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYS 109
+I + W GFDW Q T +P IK D +N R S + I+ R +
Sbjct: 338 EIPERSWNTGFDWI-TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ-------LSRKT 389
Query: 110 AENDVPPDETSNWD 123
+ + P + ++WD
Sbjct: 390 FDTEYPKTKLTDWD 403
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 50 DIKKHKWFQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYS 109
+I + W GFDW Q T +P IK D +N R S + I+ R +
Sbjct: 338 EIPERSWNTGFDWI-TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ-------LSRKT 389
Query: 110 AENDVPPDETSNWD 123
+ + P + ++WD
Sbjct: 390 FDTEYPKTKLTDWD 403
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 18 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 58
P+++ + SL+K + + P +R I DI++H+WF+
Sbjct: 236 PQYLNPSVISLLKHMLQVDPM-----KRATIKDIREHEWFK 271
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 18 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 58
P+++ R+ +L+ + + P +R I DI++H+WF+
Sbjct: 231 PEYLNRSVATLLMHMLQVDPL-----KRATIKDIREHEWFK 266
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 18 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 58
P+++ R+ +L+ + + P +R I DI++H+WF+
Sbjct: 231 PEYLNRSVATLLMHMLQVDPL-----KRATIKDIREHEWFK 266
>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|F Chain F, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 305
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 4 YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 58
Y + N+G P L+K + + PA+R I I++H WF+
Sbjct: 219 YKLFENIGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRF-----SIRQIRQHSWFR 268
>pdb|2JLU|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna
pdb|2JLU|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna
pdb|2JLV|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Amppnp
pdb|2JLV|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And
Amppnp
pdb|2JLW|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna2
pdb|2JLW|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna2
pdb|2JLX|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp-
Vanadate
pdb|2JLX|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp-
Vanadate
pdb|2JLZ|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp
pdb|2JLZ|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp
Length = 451
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 50 DIKKHKWFQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYS 109
+I + W GFDW Q T +P IK D +N R S + I+ R +
Sbjct: 171 EIPERSWNTGFDWI-TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ-------LSRKT 222
Query: 110 AENDVPPDETSNWD 123
+ + P + ++WD
Sbjct: 223 FDTEYPKTKLTDWD 236
>pdb|2JLS|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Adp
Length = 451
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 50 DIKKHKWFQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYS 109
+I + W GFDW Q T +P IK D +N R S + I+ R +
Sbjct: 171 EIPERSWNTGFDWI-TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ-------LSRKT 222
Query: 110 AENDVPPDETSNWD 123
+ + P + ++WD
Sbjct: 223 FDTEYPKTKLTDWD 236
>pdb|2JLR|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Amppnp
Length = 451
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 50 DIKKHKWFQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYS 109
+I + W GFDW Q T +P IK D +N R S + I+ R +
Sbjct: 171 EIPERSWNTGFDWI-TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ-------LSRKT 222
Query: 110 AENDVPPDETSNWD 123
+ + P + ++WD
Sbjct: 223 FDTEYPKTKLTDWD 236
>pdb|2JLQ|A Chain A, Dengue Virus 4 Ns3 Helicase Structure, Apo Enzyme.
pdb|2JLY|A Chain A, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp-
Phosphate
pdb|2JLY|B Chain B, Dengue Virus 4 Ns3 Helicase In Complex With Ssrna And Adp-
Phosphate
Length = 451
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 50 DIKKHKWFQGFDWDGLRNQTLTPPIIPVIKGPTDTSNFDRYSAENDIKGPTDTSNFDRYS 109
+I + W GFDW Q T +P IK D +N R S + I+ R +
Sbjct: 171 EIPERSWNTGFDWI-TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQ-------LSRKT 222
Query: 110 AENDVPPDETSNWD 123
+ + P + ++WD
Sbjct: 223 FDTEYPKTKLTDWD 236
>pdb|4GAM|A Chain A, Complex Structure Of Methane Monooxygenase Hydroxylase
And Regulatory Subunit
pdb|4GAM|F Chain F, Complex Structure Of Methane Monooxygenase Hydroxylase
And Regulatory Subunit
pdb|4GAM|K Chain K, Complex Structure Of Methane Monooxygenase Hydroxylase
And Regulatory Subunit
pdb|4GAM|P Chain P, Complex Structure Of Methane Monooxygenase Hydroxylase
And Regulatory Subunit
Length = 527
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 54 HKWFQGFDWDGLRNQT 69
H+W Q F+WD N+T
Sbjct: 29 HRWLQSFNWDFKNNRT 44
>pdb|1MMO|D Chain D, Crystal Structure Of A Bacterial Non-Haem Iron
Hydroxylase That Catalyses The Biological Oxidation Of
Methane
pdb|1MMO|E Chain E, Crystal Structure Of A Bacterial Non-Haem Iron
Hydroxylase That Catalyses The Biological Oxidation Of
Methane
pdb|1MTY|D Chain D, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
pdb|1MTY|E Chain E, Methane Monooxygenase Hydroxylase From Methylococcus
Capsulatus (Bath)
Length = 512
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 54 HKWFQGFDWDGLRNQT 69
H+W Q F+WD N+T
Sbjct: 15 HRWLQSFNWDFKNNRT 30
>pdb|1FZ4|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ4|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soaked At Ph
8.5 (0.1 M Tris)
pdb|1FZ5|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ5|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Crystallized
Anaerobically From Reduced Enzyme
pdb|1FZ7|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soaked In
0.9 M Ethanol
pdb|1FZ7|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soaked In
0.9 M Ethanol
pdb|1FYZ|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FYZ|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Reduced By
Soaking
pdb|1FZ0|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ0|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Grown Anaerobically
pdb|1FZ1|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ1|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Oxidized
pdb|1FZ2|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ2|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Mixed-Valent
Generated By Crystal Soaking
pdb|1FZ3|A Chain A, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph
6.2 (0.1 M Pipes)
pdb|1FZ3|B Chain B, Methane Monooxygenase Hydroxylase, Form Iii Soak At Ph
6.2 (0.1 M Pipes)
pdb|1FZ6|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ6|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Soaked In 1 M
Methanol
pdb|1FZ8|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii
Cocrystallized With Dibromomethane
pdb|1FZ8|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii
Cocrystallized With Dibromomethane
pdb|1FZ9|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii
Cocrystallized With Iodoethane
pdb|1FZ9|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii
Cocrystallized With Iodoethane
pdb|1FZH|A Chain A, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZH|B Chain B, Methane Monooxygenase Hydroxylase, Form Ii Pressurized
With Xenon Gas
pdb|1FZI|A Chain A, Methane Monooxygenase Hydroxylase, Form I Pressurized
With Xenon Gas
pdb|1FZI|B Chain B, Methane Monooxygenase Hydroxylase, Form I Pressurized
With Xenon Gas
pdb|1XMF|A Chain A, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMF|B Chain B, Structure Of Mn(Ii)-Soaked Apo Methane Monooxygenase
Hydroxylase Crystals From M. Capsulatus (Bath)
pdb|1XMG|A Chain A, Crystal Structure Of Apo Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMG|B Chain B, Crystal Structure Of Apo Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|A Chain A, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XMH|B Chain B, Structure Of Co(Ii) Reconstituted Methane Monooxygenase
Hydroxylase From M. Capsulatus (Bath)
pdb|1XU5|A Chain A, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XU5|B Chain B, Soluble Methane Monooxygenase Hydroxylase-phenol Soaked
pdb|1XVB|A Chain A, Soluble Methane Monooxygenase Hydroxylase:
6-Bromohexanol Soaked Structure
pdb|1XVB|B Chain B, Soluble Methane Monooxygenase Hydroxylase:
6-Bromohexanol Soaked Structure
pdb|1XVC|A Chain A, Soluble Methane Monooxygenase Hydroxylase:
8-Bromooctanol Soaked Structure
pdb|1XVC|B Chain B, Soluble Methane Monooxygenase Hydroxylase:
8-Bromooctanol Soaked Structure
pdb|1XVD|A Chain A, Soluble Methane Monooxygenase Hydroxylase:
4-Fluorophenol Soaked Structure
pdb|1XVD|B Chain B, Soluble Methane Monooxygenase Hydroxylase:
4-Fluorophenol Soaked Structure
pdb|1XVE|A Chain A, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVE|B Chain B, Soluble Methane Monooxygenase Hydroxylase: 3-bromo-3-
Butenol Soaked Structure
pdb|1XVF|A Chain A, Soluble Methane Monooxygenase Hydroxylase:
Chloropropanol Soaked Structure
pdb|1XVF|B Chain B, Soluble Methane Monooxygenase Hydroxylase:
Chloropropanol Soaked Structure
pdb|1XVG|A Chain A, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XVG|B Chain B, Soluble Methane Monooxygenase Hydroxylase: Bromoethanol
Soaked Structure
pdb|1XU3|A Chain A, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
pdb|1XU3|B Chain B, Soluble Methane Monooxygenase Hydroxylase-Soaked With
Bromophenol
Length = 527
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 54 HKWFQGFDWDGLRNQT 69
H+W Q F+WD N+T
Sbjct: 29 HRWLQSFNWDFKNNRT 44
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+ Y + + + K+P+ + + + I C ++ E + + VD KH Q
Sbjct: 109 EVYTIPLGGSVHKLPYA--IAGSGSTFIYGYCDKNFRENMSKEE--TVDFIKHSLSQAIK 164
Query: 62 WDG 64
WDG
Sbjct: 165 WDG 167
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+ Y + + + K+P+ + + + I C ++ E + + VD KH Q
Sbjct: 109 EVYTIPLGGSVHKLPYA--IAGSGSTFIYGYCDKNFRENMSKEE--TVDFIKHSLSQAIK 164
Query: 62 WDG 64
WDG
Sbjct: 165 WDG 167
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+ Y + + + K+P+ + + + I C ++ E + + VD KH Q
Sbjct: 118 EVYTIPLGGSVHKLPYA--IAGSGSTFIYGYCDKNFRENMSKEE--TVDFIKHSLSQAIK 173
Query: 62 WDG 64
WDG
Sbjct: 174 WDG 176
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 2 QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 61
+ Y + + + K+P+ + + + I C ++ E + + VD KH Q
Sbjct: 128 EVYTIPLGGSVHKLPYA--IAGSGSTFIYGYCDKNFRENMSKEE--TVDFIKHSLSQAIK 183
Query: 62 WDG 64
WDG
Sbjct: 184 WDG 186
>pdb|3PHB|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
pdb|3PHB|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Dadme-Immg
Length = 324
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAENDV 114
D N +S +N ++GP D DR+ A +D
Sbjct: 169 DHINLPGFSGQNPLRGPNDERFGDRFPAMSDA 200
>pdb|2A0W|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257g
Mutant
pdb|2OC9|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257g With Imm-H
Length = 289
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAEND 113
D N +S +N ++GP D DR+ A +D
Sbjct: 134 DHINLPGFSGQNPLRGPNDERFGDRFPAMSD 164
>pdb|1M73|E Chain E, Crystal Structure Of Human Pnp At 2.3a Resolution
pdb|1RCT|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Inosine
pdb|1V2H|E Chain E, Crystal Structure Of Human Pnp Complexed With Guanine
pdb|1V3Q|E Chain E, Structure Of Human Pnp Complexed With Ddi
pdb|1PWY|E Chain E, Crystal Structure Of Human Pnp Complexed With Acyclovir
pdb|1RFG|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
Complexed With Guanosine
pdb|1V41|E Chain E, Crystal Structure Of Human Pnp Complexed With 8-Azaguanine
pdb|1V45|E Chain E, Crystal Structure Of Human Pnp Complexed With
3-Deoxyguanosine
Length = 288
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAEND 113
D N +S +N ++GP D DR+ A +D
Sbjct: 133 DHINLPGFSGQNPLRGPNDERFGDRFPAMSD 163
>pdb|1PF7|E Chain E, Crystal Structure Of Human Pnp Complexed With Immucillin H
pdb|1RR6|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Phosphate
pdb|1RSZ|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Dadme-Immucillin-H And Sulfate
pdb|1RT9|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With Immucillin-H And Sulfate
pdb|1YRY|E Chain E, Crystal Structure Of Human Pnp Complexed With Mesg
pdb|1ULA|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|1ULB|A Chain A, Application Of Crystallographic And Modeling Methods In
The Design Of Purine Nucleoside Phosphorylase Inhibitors
pdb|3BGS|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase With L-
Dadme-Immh And Phosphate
pdb|2Q7O|E Chain E, Structure Of Human Purine Nucleoside Phosphorylase In
Complex With L- Immucillin-H
pdb|3D1V|A Chain A, Crystal Structure Of Human Pnp Complexed With
2-Mercapto(3h) Quinazolinone
pdb|3K8O|E Chain E, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Q Chain Q, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|S Chain S, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|T Chain T, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|U Chain U, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8O|Y Chain Y, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Datme-Immh
pdb|3K8Q|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With Serme-Immucillin H
pdb|3INY|A Chain A, Crystal Structure Of Human Purine Nucleoside Phosphorylase
In Complex With 7-Deazaguanine
Length = 289
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAEND 113
D N +S +N ++GP D DR+ A +D
Sbjct: 134 DHINLPGFSGQNPLRGPNDERFGDRFPAMSD 164
>pdb|2A0Y|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257d
Mutant
pdb|2OC4|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257d With Imm-H
Length = 289
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAEND 113
D N +S +N ++GP D DR+ A +D
Sbjct: 134 DHINLPGFSGQNPLRGPNDERFGDRFPAMSD 164
>pdb|3GB9|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GB9|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,n243d Complexed With 2-fluoroadenine
pdb|3GGS|A Chain A, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|B Chain B, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
pdb|3GGS|C Chain C, Human Purine Nucleoside Phosphorylase Double Mutant
E201q,N243d Complexed With 2-Fluoro-2'-Deoxyadenosine
Length = 311
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAENDV 114
D N +S +N ++GP D DR+ A +D
Sbjct: 156 DHINLPGFSGQNPLRGPNDERFGDRFPAMSDA 187
>pdb|2A0X|A Chain A, Structure Of Human Purine Nucleoside Phosphorylase H257f
Mutant
pdb|2ON6|A Chain A, Crystal Stucture Of Human Purine Nucleoside Phosphorylase
Mutant H257f With Imm-H
Length = 289
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAEND 113
D N +S +N ++GP D DR+ A +D
Sbjct: 134 DHINLPGFSGQNPLRGPNDERFGDRFPAMSD 164
>pdb|4EB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EB8|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4ECE|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4ECE|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Guanine
pdb|4GKA|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
pdb|4GKA|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Phosphate
Length = 324
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAENDV 114
D N +S +N ++GP D DR+ A +D
Sbjct: 169 DHINLPGFSGQNPLRGPNDERFGDRFPAMSDA 200
>pdb|4EAR|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
pdb|4EAR|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase
(w16y, W94y, W178y, H257w) Mutant From Human Complexed
With Dadme-immg And Phosphate
Length = 324
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 83 DTSNFDRYSAENDIKGPTDTSNFDRYSAENDV 114
D N +S +N ++GP D DR+ A +D
Sbjct: 169 DHINLPGFSGQNPLRGPNDERFGDRFPAMSDA 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,296,469
Number of Sequences: 62578
Number of extensions: 172488
Number of successful extensions: 524
Number of sequences better than 100.0: 154
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 214
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)