RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3184
(185 letters)
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 109 bits (275), Expect = 2e-29
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PPF + P+Q Y I++ K+ FP H + + L++ L + +R G + G+ D
Sbjct: 235 YPPFF-ADQPIQIYEKIVS---GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVND 290
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
IK HKWF DW + + + P IP
Sbjct: 291 IKNHKWFATTDWIAIYQRKVEAPFIP 316
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 99.5 bits (249), Expect = 1e-25
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PF ++ M+TY I+N ++ FP + L+ L ++RLG + G D
Sbjct: 200 YTPFYD-SNTMKTYEKILN---AELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTED 255
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
+K H WF+ W+ L ++ + P P
Sbjct: 256 VKNHPWFKEVVWEKLLSRNIETPYEP 281
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 88.5 bits (220), Expect = 2e-21
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 92 RPPFCVM---NDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
PF V N + I+ + P+P+ ++ A+ LI+ L + P +RLG
Sbjct: 259 ASPFTVDGEKNSQAEISRRILK---SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRD 315
Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
+IK+H +FQ +WD L + + P P
Sbjct: 316 ADEIKEHLFFQKINWDDLAAKKVPAPFKP 344
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 86.5 bits (215), Expect = 7e-21
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY-QRGGIV 150
PPF + + II + FP+ A+ L++ L +RLG + G
Sbjct: 229 LPPFR-AGNEYLIFQKIIK---LEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYG 284
Query: 151 DIKKHKWFQGFDWDGLRNQTLTPPIIP 177
+K H +F+ W+ L Q TPP +
Sbjct: 285 PLKAHPFFESVTWENLHQQ--TPPKLT 309
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 85.7 bits (213), Expect = 1e-20
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PPF + +T + I+ K+ P ++T+ A+ L+K L K + A RLG G +
Sbjct: 218 APPFTG-ENRKKTIDKILK---CKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGE 273
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
++ H +F+ +W+ L + + PP P
Sbjct: 274 VQAHPFFRHINWEELLARKVEPPFKP 299
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 84.9 bits (211), Expect = 3e-20
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PF D +T MI+ K+ P+ ++ AQSL++ L K +PA RLG G+ +
Sbjct: 223 TLPFQG-KDRKETMTMILK---AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEE 278
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
IK+H +F DW+ L + + PP P
Sbjct: 279 IKRHSFFSTIDWNKLYRREIHPPFKP 304
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 85.1 bits (211), Expect = 5e-20
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 89 IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH--VTRTAQSLIKALCKESPAERLGYQR 146
+ PF + + TY+ I+N + + FP +++ A++LI A + RLG R
Sbjct: 267 LVGDTPFYA-DSLVGTYSKIMN-HKNSLTFPDDNDISKEAKNLICAFLTD-REVRLG--R 321
Query: 147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
G+ +IK+H +F+ W + P++P
Sbjct: 322 NGVEEIKRHLFFKNDQWAWETLRDTVAPVVP 352
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 82.7 bits (205), Expect = 3e-19
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PPF + + Y+ I+N + ++T +A+ L++ L ++ +RLG + ++
Sbjct: 236 LPPFYS-RNTAEMYDNILN---KPLQLKPNITNSARHLLEGLLQKDRTKRLGAK-DDFME 290
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
IK H +F +WD L N+ +TPP P
Sbjct: 291 IKSHVFFSLINWDDLINKKITPPFNP 316
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 83.4 bits (206), Expect = 3e-19
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 92 RPPFCVMN--DPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI 149
PF D + M + + P + +SL++ L + RLG G
Sbjct: 388 HSPFRQHKTKDKHEIDRMTLT---MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGA 444
Query: 150 VDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
++K+ +F+ DW + Q PP+IP
Sbjct: 445 QEVKESPFFRSLDWQMVFLQKYPPPLIP 472
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 82.4 bits (203), Expect = 6e-19
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+ PF D + + I+ + +PK +++ A ++ K L + P +RLG G D
Sbjct: 539 QAPFE-GEDEDELFQSIME---HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERD 594
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
IK+H +F+ DW+ L + + PP P AS
Sbjct: 595 IKEHAFFRYIDWEKLERKEIQPPYKPKAS 623
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 81.1 bits (201), Expect = 1e-18
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+ PF D + + I+ + +PK +++ A ++ K L + P +RLG G D
Sbjct: 218 QAPFE-GEDEDELFQSIME---HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERD 273
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
IK+H +F+ DW+ L + + PP P
Sbjct: 274 IKEHAFFRYIDWEKLERKEIQPPYKP 299
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 80.0 bits (198), Expect = 2e-18
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 62 LSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH 121
++GR PF ++ N + +I+ +I P+
Sbjct: 204 MAGRSPFDIVGSSDNPDQ-------------------NTEDYLFQVILE---KQIRIPRS 241
Query: 122 VTRTAQSLIKALCKESPAERLGY-QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
++ A S++K+ + P ERLG + G DI+ H +F+ DWD + + + PP P
Sbjct: 242 LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKP 298
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 80.1 bits (198), Expect = 3e-18
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 89 IFSRPPF--CVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQR 146
+ R P+ + + + +P ++ SL+K L + +P +R
Sbjct: 211 LRGRRPYHIRSSTSSKEIVHTFET---TVVTYPSAWSQEMVSLLKKLLEPNPDQRFS--- 264
Query: 147 GGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
+ D++ + +WD + + L P IP
Sbjct: 265 -QLSDVQNFPYMNDINWDAVFQKRLIPGFIP 294
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 79.2 bits (196), Expect = 4e-18
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
R PF D + + +I+ ++I FP+ ++ A+SL+ L K+ P +RLG +
Sbjct: 202 RLPFYN-QDHERLFELILM---EEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKE 257
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
+ +H++F +W + + L PP P
Sbjct: 258 VMEHRFFLSINWQDVVQKKLLPPFKP 283
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 79.8 bits (197), Expect = 4e-18
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 89 IFSRPPFCVMNDPMQTYNMIINVGIDKIPFP---KHVTRTAQSLIKALCKESPAERLGYQ 145
+ + PF + +TY I++ + + P + V A+ I+ L P RLG
Sbjct: 264 FYGQTPFYA-DSTAETYGKIVH-YKEHLSLPLVDEGVPEEARDFIQRLLCP-PETRLG-- 318
Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
RGG D + H +F G DWDGLR+ PP P
Sbjct: 319 RGGAGDFRTHPFFFGLDWDGLRDS--VPPFTP 348
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 79.8 bits (197), Expect = 5e-18
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
R PF D + + +I+ ++I FP+ + A+SL+ L K+ P +RLG +
Sbjct: 346 RLPF-YNQDHEKLFELILM---EEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKE 401
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
I +H++F G W + + L+PP P
Sbjct: 402 IMQHRFFAGIVWQHVYEKKLSPPFKP 427
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 79.3 bits (196), Expect = 5e-18
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 62 LSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH 121
++GR PF ++ N + +I+ +I P+
Sbjct: 247 MAGRSPFDIVGSSDNPDQ-------------------NTEDYLFQVILE---KQIRIPRS 284
Query: 122 VTRTAQSLIKALCKESPAERLGY-QRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
++ A S++K+ + P ERLG + G DI+ H +F+ DWD + + + PP P
Sbjct: 285 LSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKP 341
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 78.8 bits (195), Expect = 7e-18
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGY-QRGGIV 150
PF + + I+N D++ +P + A ++K+ ++P RLG +GG
Sbjct: 221 HAPFEA-ENEDDLFEAILN---DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEH 276
Query: 151 DIKKHKWFQGFDWDGLRNQTLTPPIIP 177
I +H +F+ DW L ++ + PP P
Sbjct: 277 AILRHPFFKEIDWAQLNHRQIEPPFRP 303
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 78.3 bits (193), Expect = 1e-17
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 89 IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKH---VTRTAQSLIKALCKESPAERLGYQ 145
++ PF ++TY I+N ++ FP V+ A+ LI+ L S RLG
Sbjct: 275 LYGETPFYA-ESLVETYGKIMN-HKERFQFPTQVTDVSENAKDLIRRLIC-SREHRLG-- 329
Query: 146 RGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
+ GI D KKH +F G DWD +RN P IP
Sbjct: 330 QNGIEDFKKHPFFSGIDWDNIRN--CEAPYIP 359
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase;
HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7
PDB: 2jed_A*
Length = 345
Score = 76.5 bits (189), Expect = 5e-17
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+ PF D + ++ I D +P+ + + A+ L+ L P +RLG + D
Sbjct: 215 QSPFHG-QDEEELFHSIRM---DNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRG----D 266
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
I++H F+ +W+ L + + PP P
Sbjct: 267 IRQHPLFREINWEELERKEIDPPFRP 292
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 76.7 bits (189), Expect = 6e-17
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 92 RPPFCVMNDPMQT---YNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
R PF + ++ ++ + +P + ++ +AL ++ P +RLG++ G
Sbjct: 386 RGPFRARGEKVENKELKQRVLE---QAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGS 442
Query: 149 IVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
++ H F+ W L LTPP +P
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVP 471
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 76.0 bits (187), Expect = 1e-16
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+ PF ++ + V + + + A+SL L + PAERLG + G +
Sbjct: 382 QSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSARE 441
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
+K+H F+ ++ L L PP P
Sbjct: 442 VKEHPLFKKLNFKRLGAGMLEPPFKP 467
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG,
transferase; HET: CMP; 2.49A {Homo sapiens} PDB:
3od0_A* 3ogj_A*
Length = 139
Score = 66.6 bits (163), Expect = 1e-14
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
+DNDF+KNL+ Q++E+V+ M+ EY D+ +I EG+ G+ ++V +G+ +V K+G L
Sbjct: 26 LDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLC 85
Query: 61 LLS 63
+
Sbjct: 86 TMG 88
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 66.6 bits (163), Expect = 2e-14
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
N +LD + ++ ++M + A VI +G+ G++ +V +GE V + +
Sbjct: 41 EKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWAT 100
Query: 61 LLS 63
+
Sbjct: 101 SVG 103
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic
nucleotide binding domain, evolution, PKA signaling,
transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 64.1 bits (156), Expect = 5e-13
Identities = 9/68 (13%), Positives = 24/68 (35%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
+N LD+ + ++ + + +I +G+ G+ +V +G + +
Sbjct: 10 RNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVN 69
Query: 61 LLSGRPPF 68
F
Sbjct: 70 SSGPGSSF 77
Score = 49.0 bits (117), Expect = 1e-07
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
LK+L T ++ +++ Y+ +I EG+ G + ++ G V K G+
Sbjct: 128 KSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ 184
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 62.4 bits (152), Expect = 7e-13
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
D KNLD Q+ +++++M + K +VI +G+ G++ +V G F +
Sbjct: 41 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCD 97
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 64.2 bits (156), Expect = 7e-13
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
+DNDF+KNL+ Q++E+V+ M+ EY D+ +I EG+ G+ ++V +G+ +V K+G L
Sbjct: 42 LDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKLC 101
Query: 61 LLS 63
+
Sbjct: 102 TMG 104
Score = 45.7 bits (108), Expect = 2e-06
Identities = 9/55 (16%), Positives = 27/55 (49%)
Query: 3 NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
++L + ++ + + + Y+ Y+I +G G+ F+ ++G+ V ++
Sbjct: 162 VPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS 216
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 57.7 bits (139), Expect = 2e-10
Identities = 14/68 (20%), Positives = 30/68 (44%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
N +LD + ++ ++M + A VI +G+ G++ +V +GE V + +
Sbjct: 42 EKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWAT 101
Query: 61 LLSGRPPF 68
+ F
Sbjct: 102 SVGEGGSF 109
Score = 44.6 bits (105), Expect = 6e-06
Identities = 10/57 (17%), Positives = 28/57 (49%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
L++LD + + +++ +++ ++ +GE G++ F+ EG V++
Sbjct: 160 SKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS 216
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 56.7 bits (137), Expect = 4e-10
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 16/108 (14%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
+ PF + ++ +N I P T
Sbjct: 245 MFYNVVPFSLKISLVELFNNIRTK----NIEYPLDRNHFLYPLTNK-------KSTCSNN 293
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRN 168
++ +K +++PAER+ D KH+W + + LR
Sbjct: 294 FLSNEDIDFLKLFLRKNPAERIT-----SEDALKHEWLADTNIEDLRE 336
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors,
virtual screening, X-RAY CO- crystal analysis,
structure-based drug design (SBDD); HET: MMH; 1.90A
{Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A*
2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A*
3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A*
3lau_A* 2wtv_A* ...
Length = 279
Score = 54.9 bits (133), Expect = 1e-09
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+PPF N +TY I V + FP VT A+ LI L K +P++R + +
Sbjct: 204 KPPF-EANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLKHNPSQRP-----MLRE 254
Query: 152 IKKHKWFQGFDWDGLRNQT 170
+ +H W Q
Sbjct: 255 VLEHPWITANSSKPSNCQN 273
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 55.1 bits (132), Expect = 2e-09
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILR 60
N +LD + ++ ++M + A VI +G G++ +V +GE V +G+ +
Sbjct: 133 SKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVT 192
Query: 61 LLSGRPPF 68
+S F
Sbjct: 193 NISEGGSF 200
Score = 43.9 bits (103), Expect = 9e-06
Identities = 9/57 (15%), Positives = 28/57 (49%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
L++L+ + + +++ +++ ++ +GE G+D ++ EG V++
Sbjct: 251 SKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRS 307
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 53.8 bits (130), Expect = 3e-09
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PPF +T+ I+NV + FP ++ ++ LI L + P +RL +
Sbjct: 209 MPPF-DSPSHTETHRRIVNV---DLKFPPFLSDGSKDLISKLLRYHPPQRL-----PLKG 259
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIP 177
+ +H W + ++ + PP+
Sbjct: 260 VMEHPWVKAN------SRRVLPPVYQ 279
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 54.0 bits (129), Expect = 4e-09
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
D KNLD Q+ +++++M + K +VI +G+ G++ +V G F +
Sbjct: 148 KDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCD 204
Score = 44.7 bits (105), Expect = 5e-06
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
FLK+L+ + ++V+ + Y +I +G+ + F+ GE ++ K
Sbjct: 274 FLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRK 326
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 47.7 bits (114), Expect = 4e-07
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 89 IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
+ + PF + + + + II+ +I FP + Q ++K K P +R+
Sbjct: 233 TYGKTPFQQIINQISKLHAIIDPN-HEIEFPDIPEKDLQDVLKCCLKRDPKQRI-----S 286
Query: 149 IVDIKKHKWFQ 159
I ++ H + Q
Sbjct: 287 IPELLAHPYVQ 297
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
potassium channel; dimer helical bundle beta barrel
core with cyclic AMP bound; HET: CMP; 1.70A
{Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A*
2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Length = 138
Score = 45.7 bits (109), Expect = 5e-07
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK-DGKILR-- 60
+ L + E+V ++ A + GE G+ +F EG V + L
Sbjct: 17 PLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPG 76
Query: 61 -------LLSGRP 66
L+SG P
Sbjct: 77 AFFGEMALISGEP 89
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 47.0 bits (112), Expect = 7e-07
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 89 IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
+ + PF + + + + II+ +I FP + Q ++K K P +R+
Sbjct: 214 TYGKTPFQQIINQISKLHAIIDPN-HEIEFPDIPEKDLQDVLKCCLKRDPKQRI-----S 267
Query: 149 IVDIKKHKWFQ 159
I ++ H + Q
Sbjct: 268 IPELLAHPYVQ 278
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain,
PDZ domain containing guanine nucleotide exchange
factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 44.7 bits (106), Expect = 1e-06
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEY-KADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLL 62
N+ +E+ M +A ++ +G+ + +V G ++ + L
Sbjct: 22 PAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENL 81
Query: 63 S 63
Sbjct: 82 F 82
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 46.0 bits (109), Expect = 2e-06
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 89 IFSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGG 148
+ + PF + + + + II+ +I FP + Q ++K K P +R+
Sbjct: 261 TYGKTPFQQIINQISKLHAIIDPN-HEIEFPDIPEKDLQDVLKCCLKRDPKQRI-----S 314
Query: 149 IVDIKKHKWFQ 159
I ++ H + Q
Sbjct: 315 IPELLAHPYVQ 325
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 44.6 bits (106), Expect = 2e-06
Identities = 8/59 (13%), Positives = 22/59 (37%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS 63
+ ++ + + + GE+ + L G +VI+D +++ +L
Sbjct: 34 AFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILG 92
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK,
STK18, PSI, structural genomics, protein structure
initiative; HET: ANP; 2.25A {Homo sapiens}
Length = 278
Score = 44.8 bits (107), Expect = 4e-06
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 92 RPPFCVMNDP--MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI 149
RPPF + T N ++ P ++ A+ LI L + +PA+RL +
Sbjct: 209 RPPF---DTDTVKNTLNKVVLA---DYEMPSFLSIEAKDLIHQLLRRNPADRL-----SL 257
Query: 150 VDIKKHKWFQ 159
+ H +
Sbjct: 258 SSVLDHPFMS 267
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 44.0 bits (104), Expect = 5e-06
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGKILRL 61
+ +V+ + M D ++TEG+ G+ L + GE VIK + I +
Sbjct: 46 LFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTI 105
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 44.5 bits (104), Expect = 6e-06
Identities = 4/55 (7%), Positives = 16/55 (29%)
Query: 3 NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
+ ++++ + + + +G+ G + + G V
Sbjct: 47 VKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101
Score = 40.7 bits (94), Expect = 1e-04
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 1 MDNDFLKNLDTLQVKEMVESMHQAEY-KADNYVITEGEAGNDLFVSAEGEFQVIKDGK 57
+ L +L T +E+ + + K + +GE G ++ +G V+ GK
Sbjct: 340 LHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK 397
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
selectivity residues, POLO-like K structure based drug
design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
3db6_A* 3dbe_A* 3dbf_A*
Length = 294
Score = 43.7 bits (104), Expect = 9e-06
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+PPF + +TY I + PKH+ A SLI+ + + P R I +
Sbjct: 212 KPPF-ETSCLKETYLRIKKN---EYSIPKHINPVAASLIQKMLQTDPTARP-----TINE 262
Query: 152 IKKHKWFQ-GFDWDGLRNQTLT-PPIIPVA 179
+ ++F G+ L LT PP +A
Sbjct: 263 LLNDEFFTSGYIPARLPITCLTIPPRFSIA 292
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 43.5 bits (103), Expect = 1e-05
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 94 PFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIK 153
P+ +D Q Y+ P+ K + +L+ + E+P+ R+ I DIK
Sbjct: 207 PWDQPSDSCQEYSDWKEKKTYLNPW-KKIDSAPLALLHKILVENPSARIT-----IPDIK 260
Query: 154 KHKWFQGFDWDGLRNQTLTPPIIP 177
K +W+ L+ P +
Sbjct: 261 KDRWYN----KPLKKGAKRPRVTS 280
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 43.1 bits (102), Expect = 2e-05
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+PPF + +TY I + PKH+ A SLI+ + + P R I +
Sbjct: 238 KPPF-ETSCLKETYLRIKKN---EYSIPKHINPVAASLIQKMLQTDPTARP-----TINE 288
Query: 152 IKKHKWFQ-GFDWDGLRNQTLTPP 174
+ ++F G+ L LT P
Sbjct: 289 LLNDEFFTSGYIPARLPITCLTIP 312
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET:
YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A*
2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A*
2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A*
2x8i_A* 2xey_A* 2xez_A* ...
Length = 276
Score = 43.0 bits (102), Expect = 2e-05
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 94 PFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIK 153
P+ +D Q Y+ P+ K + +L+ + E+P+ R+ I DIK
Sbjct: 207 PWDQPSDSCQEYSDWKEKKTYLNPW-KKIDSAPLALLHKILVENPSARIT-----IPDIK 260
Query: 154 KHKWFQ 159
K +W+
Sbjct: 261 KDRWYN 266
>3ukn_A Novel protein similar to vertebrate potassium VOL channel,
subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD,
CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB:
3ukt_B 3ukv_B
Length = 212
Score = 42.4 bits (100), Expect = 2e-05
Identities = 9/59 (15%), Positives = 26/59 (44%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS 63
++ ++ + + + ++I +G+A ++ G +V+KD +L +L
Sbjct: 82 LFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILG 140
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide
monophosphate, CNMP, CNMP-binding, structural genomics;
NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Length = 137
Score = 40.6 bits (95), Expect = 4e-05
Identities = 8/51 (15%), Positives = 22/51 (43%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKD 55
+N+D + + E + + +Y++ EG+ N++ G + +
Sbjct: 13 LFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT 63
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 40.8 bits (95), Expect = 1e-04
Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 20/87 (22%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
P + + I K++ + ++L++ + +RL
Sbjct: 310 DLPI-TKDAALGGSEWIFR-------SCKNIPQPVRALLEGFLRYPKEDRLLPL-----Q 356
Query: 152 IKKHKWFQGFDWDGLRNQTLTPPIIPV 178
+ ++ + +T +P+
Sbjct: 357 AMETPEYE-------QLRTELSAALPL 376
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 39.6 bits (93), Expect = 1e-04
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 1 MDNDFLKN------LDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK 54
+ L++ L +Q++E++ S YV +GE + + G ++ +
Sbjct: 9 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR 68
Query: 55 ---DGK--ILRLLS 63
+G+ IL + +
Sbjct: 69 LTPEGQEKILEVTN 82
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 40.4 bits (95), Expect = 1e-04
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 90 FSRPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGI 149
F P+ ++ + + + + IP + L+ ++ P +R I
Sbjct: 241 FGEGPYDMVFQKGDSVALAVQNQL-SIPQSPRHSSALWQLLNSMMTVDPHQRP-----HI 294
Query: 150 VDIKKHKWF 158
+
Sbjct: 295 PLLLSQLEA 303
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein
structure initiative; 2.00A {Streptomyces coelicolor
A3}
Length = 149
Score = 39.6 bits (93), Expect = 1e-04
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
LD Q E+ SM + + + EG+ G+ L+V EG+ ++ + DG+ +L
Sbjct: 12 LFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENML 71
Query: 60 RLL 62
++
Sbjct: 72 AVV 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 1e-04
Identities = 30/199 (15%), Positives = 67/199 (33%), Gaps = 53/199 (26%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS 63
F+ N D V++M +S ++++ E + + +S + LRL
Sbjct: 28 AFVDNFDCKDVQDMPKS-----------ILSKEEI-DHIIMSKDAVSGT------LRLF- 68
Query: 64 GRPPFCVMNDPMQTYNMIINVGIDNIFS----------RPPFCVMNDPMQTYNMIINVGI 113
+ +++ + + + + R P + ++ + + N
Sbjct: 69 ----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--- 121
Query: 114 DKIPFPK-HVTR--TAQSLIKALCKESPAERLG-YQRGGI------------VDIKKHKW 157
D F K +V+R L +AL + PA+ + G ++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 158 FQGFDWDGLRNQTLTPPII 176
F+ F W L+N ++
Sbjct: 182 FKIF-WLNLKNCNSPETVL 199
Score = 34.4 bits (78), Expect = 0.016
Identities = 35/278 (12%), Positives = 71/278 (25%), Gaps = 102/278 (36%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEYK----------------ADNYVITEGEAGND------ 41
L + V++ VE + + YK Y+ ND
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 42 LFVSAEGEFQVIKD-------------------GK---ILRLLSGRPPFCVMNDPM---- 75
VS + ++ GK L + C M+ +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 76 ----QTYNMIINVGIDNIFSR--PPFCVMNDPMQTYNMIINVGIDKI-------PFPK-- 120
+ ++ + + + + P + +D + I+ ++ P+
Sbjct: 189 LKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 121 ----HVTRTAQSLIKAL---CK-------ESPAERLGYQRGGIVDIKKHKWFQGFD---- 162
+V + A+ A CK + + L + + H
Sbjct: 248 LVLLNV-QNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--TLTPDEV 303
Query: 163 ------WDGLRNQTLTPP----IIP-----VASILRDE 185
+ R Q L P P +A +RD
Sbjct: 304 KSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDG 340
Score = 26.4 bits (57), Expect = 7.5
Identities = 23/231 (9%), Positives = 55/231 (23%), Gaps = 97/231 (41%)
Query: 15 KEMVESMHQA--EYKADNYVITEGEAG-----------NDLFVSAEGEFQV--IKDGK-- 57
+ + QA E + V+ +G G V + +F++ +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 58 -------ILRLLSGR--PPFCVMNDPMQTYNMIINVGID---NIFSRPPF---------- 95
+L+ L + P + +D + I+ + P+
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 96 ------------C-----------------------VMNDPMQTYN---------MIINV 111
C ++ T ++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 112 GIDKIP------FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHK 156
+P P+ + S+I ++ A ++ V+ K
Sbjct: 314 RPQDLPREVLTTNPRRL-----SIIAESIRDGLATWDNWKH---VNCDKLT 356
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural
genomics, joint center for structural genomics; HET:
MSE; 1.90A {Geobacter metallireducens}
Length = 142
Score = 38.4 bits (90), Expect = 3e-04
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK 54
F +L Q+K++ + + + + E ++L + EG ++
Sbjct: 13 FFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFY 62
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 38.9 bits (91), Expect = 4e-04
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
K ++ + H +Y + + +I +GE L+ +G V+ +GK IL
Sbjct: 53 LGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMIL 112
Query: 60 RLLS 63
L+
Sbjct: 113 SYLN 116
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 38.9 bits (91), Expect = 5e-04
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 93 PPFCVMNDPMQTYNMIINVGIDKIP-FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
P M + + +V I+ P F + + + +I+ L P +R G
Sbjct: 227 PFSTGMER-VNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRP-----GART 280
Query: 152 IKKHKWFQGFDWDGLRNQTL 171
+ W D + + L
Sbjct: 281 LLNSGWLPVKHQDEVIKEAL 300
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 38.0 bits (89), Expect = 5e-04
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVI-KDGKILRLLS 63
F D+ V +V + ++ +YVI EG G+ +F +G +I DG I LS
Sbjct: 78 FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLS 137
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE
JCSG, PSI, protein structure initiative, joint center
for S genomics; 2.30A {Thermotoga maritima} SCOP:
b.82.3.2
Length = 213
Score = 38.0 bits (89), Expect = 6e-04
Identities = 7/62 (11%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 7 KNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILRL 61
+ + +K+++ ++ V + + D+ + EG + +GK +
Sbjct: 8 HHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDE 67
Query: 62 LS 63
+
Sbjct: 68 IK 69
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 38.1 bits (89), Expect = 6e-04
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKILRLLS 63
N D V M+ + ++ +Y+I EG G ++ G V+ G LS
Sbjct: 79 LFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLS 137
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 38.0 bits (89), Expect = 8e-04
Identities = 10/65 (15%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--I 58
+ ++ + + + + ++ + V EGE G+ L++ G+ ++ + DG+ +
Sbjct: 12 GIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL 71
Query: 59 LRLLS 63
L ++
Sbjct: 72 LTIMG 76
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 38.1 bits (89), Expect = 8e-04
Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 11/67 (16%)
Query: 93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
P + Q + G F ++ +S++ + + P R +
Sbjct: 254 LPH--GGEGWQQ----LRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRA-----TAEAL 302
Query: 153 KKHKWFQ 159
+
Sbjct: 303 LALPVLR 309
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.86A {Deinococcus
geothermalis dsm 11300}
Length = 231
Score = 38.0 bits (89), Expect = 8e-04
Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
+N+ ++E ++ + + ++ D V+ + G L + G +V + G+ +L
Sbjct: 13 LFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVL 72
Query: 60 RLL 62
+
Sbjct: 73 GDI 75
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme
sensor, catabolite gene activator protein; HET: HEM;
2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Length = 222
Score = 37.6 bits (88), Expect = 9e-04
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK--DGK--IL 59
+ L + + + + V T N +FV +G +V + + L
Sbjct: 6 NIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISL 65
Query: 60 RLLS 63
L+
Sbjct: 66 FYLT 69
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 37.2 bits (87), Expect = 0.001
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
L +V + + Y + +G+ G L++ A G+ ++ + G+ L
Sbjct: 6 LFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL 65
Query: 60 RLLS 63
LL
Sbjct: 66 ALLG 69
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 37.3 bits (86), Expect = 0.001
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 6 LKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDG 56
+ + + S+ A ++ +GE + + G +V G
Sbjct: 21 FQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVG 71
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense}
SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A
3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 36.9 bits (86), Expect = 0.002
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 1 MDNDFLKN------LDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK 54
+ DF +++ + ++ + VI GE + EG+ ++
Sbjct: 6 LGKDFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDI 65
Query: 55 ---DGK--ILRLLS 63
DG +L
Sbjct: 66 IFEDGSEKLLYYAG 79
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine
protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3,
ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A*
1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Length = 328
Score = 36.9 bits (86), Expect = 0.002
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 117 PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPII 176
P +++ ++L+K +P +R + I K +W G L P +
Sbjct: 232 RIPFYMSTDCENLLKRFLVLNPIKRGT-----LEQIMKDRWINA----GHEEDELKPFVE 282
Query: 177 PVASILRDE 185
P I +
Sbjct: 283 PELDISDQK 291
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1;
DNA transcription regulator, DNA binding protein; HET:
HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB:
2hkx_A*
Length = 220
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK--DGK--IL 59
+ L+ L++ + +++ + Y + T N +F+ G +V + K L
Sbjct: 10 NLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTL 69
Query: 60 RLLS 63
+L
Sbjct: 70 AILE 73
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP),
allostery, DNA binding cyclic A transcription
regulator; HET: CMP; 1.60A {Escherichia coli} PDB:
2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A*
1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A
3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 36.4 bits (85), Expect = 0.002
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 7 KNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILRL 61
K ++ + H +Y + + +I +GE L+ +G V+ +GK IL
Sbjct: 5 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSY 64
Query: 62 LS 63
L+
Sbjct: 65 LN 66
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 36.1 bits (84), Expect = 0.003
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
LD ++ + H+ Y V G+ L+ G +I D + +L
Sbjct: 18 PSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVL 77
Query: 60 RLLS 63
Sbjct: 78 GYFG 81
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 36.1 bits (84), Expect = 0.003
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 9 LDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILRLLS 63
+ + +++ H+ Y A + +I G+ LF +G ++ DG+ I+ L+
Sbjct: 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLN 60
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 36.2 bits (83), Expect = 0.004
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 20/106 (18%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
++G PF P+Q + + ++I V +D +P P
Sbjct: 216 CITGFRPFLPNWQPVQWHGKVREKSNEHI------VVYDDLTGAVKF-----SSVLPTPN 264
Query: 121 HVTRTAQSL----IKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
H++ ++ + QRG FQ D
Sbjct: 265 HLSGILAGKLERWLQCMLMWHQR-----QRGTDPQNPNVGCFQALD 305
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 35.7 bits (83), Expect = 0.005
Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 101 PMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
+T + + + ++L++ L + P +R +I +
Sbjct: 221 AFETSKFFTD--LRDGIISDIFDKKEKTLLQKLLSKKPEDRP-----NTSEILRTLTVW 272
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 35.3 bits (82), Expect = 0.006
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 1 MDNDFLKN------LDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK 54
+ L++ L +Q++E++ S YV +GE + + G ++ +
Sbjct: 6 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYR 65
Query: 55 ---DGK--ILRLLS 63
+G+ IL + +
Sbjct: 66 LTPEGQEKILEVTN 79
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics,
porphyromona gingivalis, PSI, protein structure
initiative; 1.90A {Porphyromonas gingivalis} SCOP:
a.4.5.4 b.82.3.2
Length = 232
Score = 35.3 bits (82), Expect = 0.006
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 3 NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK-- 57
D L+ + + + + + K + V +EG+ N+LF EG+ ++++ G+
Sbjct: 15 RDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH 74
Query: 58 ILRLLS 63
I R++
Sbjct: 75 ISRIVK 80
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2
calmodulin-like EF...; structural genomics, protist
parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa
II}
Length = 345
Score = 35.2 bits (81), Expect = 0.007
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 32/102 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL G PF +ND T + ++N + F P +
Sbjct: 269 LLMGAVPFPGVNDA-DTISQVLNKKLC--FENPNY------------------------N 301
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
++ A+ L+ L + ER + +H W F
Sbjct: 302 VLSPLARDLLSNLLNRNVDERF-----DAMRALQHPWISQFS 338
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase,
PASK, protein kinase, drug discovery, ATP-bindin kinase,
nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Length = 335
Score = 35.5 bits (82), Expect = 0.007
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 115 KIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWF-QGFDWDGLRNQTLTP 173
I P V++ SL+ L + P R + + W Q + + +
Sbjct: 240 AIHPPYLVSKELMSLVSGLLQPVPERRTT-----LEKLVTDPWVTQPVNLADYTWEEVFR 294
Query: 174 PIIPVASILRDE 185
P + +L
Sbjct: 295 VNKPESGVLSAA 306
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling,
transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A
3zuu_A 3uc4_A 3ujg_A 3udb_A
Length = 361
Score = 35.4 bits (82), Expect = 0.007
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 94 PFCVMNDP--MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PF +P + I IP ++ LI + PA R+ I +
Sbjct: 217 PFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPATRIS-----IPE 271
Query: 152 IKKHKWFQ 159
IK H WF
Sbjct: 272 IKTHSWFL 279
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase;
1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A
2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 34.9 bits (81), Expect = 0.008
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 32/102 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF +T I +V D F F
Sbjct: 211 LLSGASPFLGDTK-QETLANITSVSYD--FDEEFF------------------------S 243
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
H + A+ I+ L + +RL Q + +H W D
Sbjct: 244 HTSELAKDFIRKLLVKETRKRLTIQ-----EALRHPWITPVD 280
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET:
AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 35.0 bits (81), Expect = 0.008
Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 32/102 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF +T I V D F F
Sbjct: 211 LLSGASPFLGDTK-QETLANITAVSYD--FDEEFF------------------------S 243
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
+ A+ I+ L + +RL I + +H W D
Sbjct: 244 QTSELAKDFIRKLLVKETRKRL-----TIQEALRHPWITPVD 280
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 34.9 bits (81), Expect = 0.008
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 32/102 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF +T + V + F F
Sbjct: 210 LLSGASPFLGDTKQ-ETLANVSAVNYE--FEDEYF------------------------S 242
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
+ + A+ I+ L + P +R+ I D +H W + D
Sbjct: 243 NTSALAKDFIRRLLVKDPKKRM-----TIQDSLQHPWIKPKD 279
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 34.9 bits (81), Expect = 0.008
Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
+++L V ++ Y + + E + V +G ++ + G ++
Sbjct: 18 LIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVV 77
Query: 60 RLL 62
+
Sbjct: 78 SVF 80
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 35.1 bits (81), Expect = 0.009
Identities = 19/102 (18%), Positives = 28/102 (27%), Gaps = 31/102 (30%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LSG PPF + + I + + F +
Sbjct: 337 CLSGYPPFSEHRTQVSLKDQITSGKYN--FIPEVW------------------------A 370
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
V+ A L+K L P R + +H W Q D
Sbjct: 371 EVSEKALDLVKKLLVVDPKARF-----TTEEALRHPWLQDED 407
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A
{Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A
2fh9_A 3mn3_A
Length = 275
Score = 34.5 bits (80), Expect = 0.011
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
PK ++ A LIK + +P R+ I +I + WF+
Sbjct: 231 LPKFLSPGAAGLIKRMLIVNPLNRIS-----IHEIMQDDWFK 267
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic
nucleotide-binding domain, structural genomics, joint
for structural genomics; 2.55A {Eubacterium rectale
atcc 33656}
Length = 220
Score = 34.2 bits (79), Expect = 0.012
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 5 FLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
+L+T Q K + +++ K + L + G+ + +G+ L
Sbjct: 10 LWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITL 69
Query: 60 RLL 62
L
Sbjct: 70 YRL 72
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 34.8 bits (80), Expect = 0.013
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 32/102 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF ND +T + + + F
Sbjct: 349 LLSGLSPFGGENDD-ETLRNVKSCDWN--MDDSAF------------------------S 381
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
++ + I+ L P R+ I +H W +
Sbjct: 382 GISEDGKDFIRKLLLADPNTRM-----TIHQALEHPWLTPGN 418
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2;
ATP-binding, cholesterol biosynthesis, fatty acid
biosynthesis;kinase, lipid synthesis; 1.85A {Homo
sapiens} PDB: 3aqv_A* 2yza_A*
Length = 276
Score = 34.5 bits (80), Expect = 0.013
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
P+++ R+ +L+ + + P +R I DI++H+WF+
Sbjct: 230 IPEYLNRSVATLLMHMLQVDPLKRAT-----IKDIREHEWFK 266
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 34.2 bits (79), Expect = 0.013
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 7 KNLDTLQVKEMVE--SMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--IL 59
+ L +++ +H ++KA +I G L +GE ++ + ++
Sbjct: 27 QGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVI 86
Query: 60 RLLS 63
+
Sbjct: 87 EQIE 90
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 34.7 bits (80), Expect = 0.014
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 34/123 (27%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL G PPF ND + F + K
Sbjct: 240 LLCGYPPFGGQND-QDIIKKVEKGKYY--FDFNDW------------------------K 272
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIPVAS 180
+++ A+ LIK + +R + + +W + + + N++ + S
Sbjct: 273 NISDEAKELIKLMLTYDYNKRCTAE-----EALNSRWIKKYANNI--NKSDQKTLCGALS 325
Query: 181 ILR 183
+R
Sbjct: 326 NMR 328
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding
protein complex, transferase metal protein complex,
nucleus; HET: ANP; 2.65A {Homo sapiens}
Length = 305
Score = 34.2 bits (79), Expect = 0.014
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQTLTPPIIP 177
P L+K + + PA+R I I++H WF+ PI P
Sbjct: 232 IPGDCGPPLSDLLKGMLEYEPAKRFS-----IRQIRQHSWFR----KKHPPAEAPVPIPP 282
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer,
anticancer drug design; HET: YCF; 1.77A {Homo sapiens}
PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A*
2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A*
2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Length = 322
Score = 34.2 bits (79), Expect = 0.015
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 31/100 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LSG PPF + + I + + F +
Sbjct: 212 CLSGYPPFSEHRTQVSLKDQITSGKYN--FIPEVW------------------------A 245
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
V+ A L+K L P R + +H W Q
Sbjct: 246 EVSEKALDLVKKLLVVDPKARF-----TTEEALRHPWLQD 280
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 34.3 bits (79), Expect = 0.015
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 15/103 (14%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
+G PF P + ++ + I S V + +P
Sbjct: 216 AATGSLPFRPFEGPRRNKEVMYKI-ITGKPSGAISGVQKAENGPIDW-----SGDMPVSC 269
Query: 121 HVTRTAQSLIKALCK----ESPAERLGYQRGGIVDIKKHKWFQ 159
++R Q L+ + + G+
Sbjct: 270 SLSRGLQVLLTPVLANILEADQEKCWGFD-----QFFAETSDI 307
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 34.2 bits (79), Expect = 0.016
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
P ++ AQSLI+ + P +R+ I +I++ WF
Sbjct: 227 MPDFLSPGAQSLIRRMIVADPMQRIT-----IQEIRRDPWFN 263
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 34.3 bits (78), Expect = 0.016
Identities = 9/99 (9%), Positives = 17/99 (17%), Gaps = 27/99 (27%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
+ PF + P + F
Sbjct: 286 VWCLFLPF-GLVTPGIKGSWKRPSLRVPGTDSLAF---------------------GSCT 323
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
+ ++LI RL + + F
Sbjct: 324 PLPDFVKTLIGRFLNFDRRRRLLPL-----EAMETPEFL 357
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 34.2 bits (79), Expect = 0.017
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 10/53 (18%)
Query: 112 GIDKI-----PFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
+I FP HV+ +LI+ P+ R + +I W Q
Sbjct: 241 RDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPS-----LEEILLDPWMQ 288
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 34.4 bits (79), Expect = 0.018
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
P+++ + SL+K + + P +R I DI++H+WF+
Sbjct: 235 TPQYLNPSVISLLKHMLQVDPMKRAT-----IKDIREHEWFK 271
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1,
peptide drug, prostate cancer, transferase; HET: ANP;
1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A*
3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A*
2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A*
3cxw_A* 3cy3_A* 2bik_B* ...
Length = 320
Score = 33.9 bits (78), Expect = 0.020
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 118 FPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
F + V+ Q LI+ P++R +I+ H W Q
Sbjct: 262 FRQRVSSECQHLIRWCLALRPSDRPT-----FEEIQNHPWMQD 299
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 33.9 bits (78), Expect = 0.021
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 32/100 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL+G PPF D + + F P + K
Sbjct: 230 LLAGYPPFGGQTD-QEILRKVEKGKYT--FDSPEW------------------------K 262
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
+V+ A+ LIK + + R+ Q +H W +
Sbjct: 263 NVSEGAKDLIKQMLQFDSQRRISAQ-----QALEHPWIKE 297
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 33.7 bits (78), Expect = 0.021
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 32/100 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL G PPF D + I F +
Sbjct: 200 LLCGYPPFSAPTDS-EVMLKIREGTFT--FPEKDW------------------------L 232
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
+V+ A+SLI+ L +SP +R+ +H+WF+
Sbjct: 233 NVSPQAESLIRRLLTKSPKQRITSL-----QALEHEWFEK 267
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine
kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing
protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB:
3lm0_A*
Length = 327
Score = 33.8 bits (78), Expect = 0.023
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 32/109 (29%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL+ PF ++ +TY I V +D +S F
Sbjct: 226 LLTHTSPFVGEDN-QETYLNISQVNVD--YSEETF------------------------S 258
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLRNQ 169
V++ A I++L ++P +R + H W Q +D++ L +
Sbjct: 259 SVSQLATDFIQSLLVKNPEKRPTAE-----ICLSHSWLQQWDFENLFHP 302
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 33.4 bits (77), Expect = 0.028
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 6/67 (8%)
Query: 93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDI 152
PF + + + + +T A L+K + + P R +
Sbjct: 223 LPFTGTSLE-EVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRP-----SAAQV 276
Query: 153 KKHKWFQ 159
H+WF+
Sbjct: 277 LHHEWFK 283
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 33.5 bits (77), Expect = 0.030
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 32/101 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PPF N+ + F P + +
Sbjct: 215 LLSGTPPFYGKNE-YDILKRVETGKYA--FDLPQW------------------------R 247
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 161
++ A+ LI+ + P+ R+ +H W Q +
Sbjct: 248 TISDDAKDLIRKMLTFHPSLRITAT-----QCLEHPWIQKY 283
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 33.2 bits (76), Expect = 0.040
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 32/100 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF +D +T + + F F
Sbjct: 243 LLSGLSPFAGEDDL-ETLQNVKRCDWE--FDEDAF------------------------S 275
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
V+ A+ IK L ++ P +RL D +H W +G
Sbjct: 276 SVSPEAKDFIKNLLQKEPRKRLTVH-----DALEHPWLKG 310
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 33.1 bits (76), Expect = 0.041
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 32/106 (30%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PPF N+ + F P + K
Sbjct: 220 LLSGCPPFNGANE-YDILKKVEKGKYT--FELPQW------------------------K 252
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGL 166
V+ +A+ LI+ + P+ R+ + D H+W Q + + +
Sbjct: 253 KVSESAKDLIRKMLTYVPSMRISAR-----DALDHEWIQTYTKEQI 293
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 33.1 bits (75), Expect = 0.043
Identities = 6/68 (8%), Positives = 21/68 (30%), Gaps = 13/68 (19%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
P + + I K++ + ++L++ + +RL +
Sbjct: 314 DLPN-TDDAALGGSEWIF-------RSCKNIPQPVRALLEGFLRYPKEDRL-----LPLQ 360
Query: 152 IKKHKWFQ 159
+ ++
Sbjct: 361 AMETPEYE 368
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase,
serine/threonine-protein, ATP-binding,
calmodulin-binding; HET: ATP; 2.20A {Oryctolagus
cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Length = 298
Score = 32.6 bits (75), Expect = 0.046
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 32/107 (29%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL+G PPF M MI++ F P +
Sbjct: 222 LLAGSPPFWHRKQ-MLMLRMIMSGNYQ--FGSPEW------------------------D 254
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLR 167
+ T + L+ P +R + H +FQ + + +R
Sbjct: 255 DYSDTVKDLVSRFLVVQPQKRY-----TAEEALAHPFFQQYVVEEVR 296
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3,
ZIP kinase, ZIPK, DAP kinase like kinase, DLK,
structural genomics consortium; HET: 7CP; 1.24A {Homo
sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A*
3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A*
3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A*
3dgk_A ...
Length = 283
Score = 32.5 bits (75), Expect = 0.049
Identities = 20/102 (19%), Positives = 29/102 (28%), Gaps = 32/102 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF +T I V D F F
Sbjct: 204 LLSGASPFLGETKQ-ETLTNISAVNYD--FDEEYF------------------------S 236
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
+ + A+ I+ L + P R+ I +H W +
Sbjct: 237 NTSELAKDFIRRLLVKDPKRRM-----TIAQSLEHSWIKAIR 273
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 32.3 bits (74), Expect = 0.061
Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 29/106 (27%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGI--DNIFSRPPFCVMNDPMQTYNMIINVGIDKIPF 118
LLSG PPF ++ + +F I G K F
Sbjct: 219 LLSGYPPFVGRCGSDCGWDRGEACPACQNMLFES----------------IQEG--KYEF 260
Query: 119 P----KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
P H++ A+ LI L +RL + +H W QG
Sbjct: 261 PDKDWAHISCAAKDLISKLLVRDAKQRL-----SAAQVLQHPWVQG 301
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 32.2 bits (74), Expect = 0.078
Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 32/100 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF + Q I+N F F K
Sbjct: 196 LLSGINPFLAETN-QQIIENIMNAEYT--FDEEAF------------------------K 228
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
++ A + L + R+ + +H W +
Sbjct: 229 EISIEAMDFVDRLLVKERKSRM-----TASEALQHPWLKQ 263
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 31.6 bits (72), Expect = 0.14
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 32/100 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF ND +T N I+ D F +
Sbjct: 281 LLSGLSPFLGDNDA-ETLNNILACRWD--LEDEEF------------------------Q 313
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
++ A+ I L + + R+ + KH W
Sbjct: 314 DISEEAKEFISKLLIKEKSWRISAS-----EALKHPWLSD 348
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide phosphorylation,
serine/threonine-protein kinase; 2.00A {Mus musculus}
PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Length = 342
Score = 31.5 bits (72), Expect = 0.14
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 33/104 (31%)
Query: 61 LLSGRPPF--CVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPF 118
+L+G PF + P + I + S +
Sbjct: 213 MLTGYTPFANGPDDTPEEILARIGSGKFS--LSGGYW----------------------- 247
Query: 119 PKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
V+ TA+ L+ + P +RL + +H W +D
Sbjct: 248 -NSVSDTAKDLVSKMLHVDPHQRL-----TAALVLRHPWIVHWD 285
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 31.1 bits (71), Expect = 0.15
Identities = 8/65 (12%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--I 58
+ + + T +VE+ ++ + + G+ ++ +G ++ + G+
Sbjct: 31 NVFRQMATGAFPPVVET-----FERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT 85
Query: 59 LRLLS 63
+ LL
Sbjct: 86 VALLR 90
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 31.1 bits (71), Expect = 0.18
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 94 PFCVMNDP--MQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PF D M ++ I + + P + + LI + ++P R+ + +
Sbjct: 239 PF---MDERIMCLHSKIKS-QALEFPDQPDIAEDLKDLITRMLDKNPESRIV-----VPE 289
Query: 152 IKKHKWFQ 159
IK H W
Sbjct: 290 IKLHPWVT 297
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 31.1 bits (71), Expect = 0.18
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 32/100 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL G PPF + + Y I D + P +
Sbjct: 223 LLVGYPPFWDEDQH-RLYAQIKAGAYD--YPSPEW------------------------D 255
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
VT A+SLI ++ +P +R+ K W
Sbjct: 256 TVTPEAKSLIDSMLTVNPKKRI-----TADQALKVPWICN 290
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK,
ATP-binding, metal-binding, NUCL binding,
serine/threonine-protein kinase, transferase; 2.00A
{Homo sapiens} PDB: 3kn5_A
Length = 325
Score = 30.7 bits (70), Expect = 0.20
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 33/104 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFP- 119
+LSG+ PF S ++ I F
Sbjct: 202 MLSGQVPF---------------------QSHDRSLTCTSAVEIMKKIKKGDFS---FEG 237
Query: 120 ---KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
K+V++ A+ LI+ L P +RL + ++ ++W Q
Sbjct: 238 EAWKNVSQEAKDLIQGLLTVDPNKRL-----KMSGLRYNEWLQD 276
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 30.8 bits (70), Expect = 0.21
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+ F + II+ P H + +SL+ L K +P +R +
Sbjct: 222 KHAFEAGS-MKNLVLKIISGSFP--PVSLHYSYDLRSLVSQLFKRNPRDRP-----SVNS 273
Query: 152 IKKHKWFQ 159
I + +
Sbjct: 274 ILEKGFIA 281
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 30.8 bits (70), Expect = 0.22
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 31/100 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL G PF + I+N F P +
Sbjct: 243 LLCGFEPFYDERGDQFMFRRILNCEYY--FISPWW------------------------D 276
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
V+ A+ L++ L P +RL +H W G
Sbjct: 277 EVSLNAKDLVRKLIVLDPKKRLTTF-----QALQHPWVTG 311
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 30.1 bits (68), Expect = 0.34
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 36/104 (34%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFP- 119
LL G PPF Y+ + +R I +G + FP
Sbjct: 256 LLCGYPPF---------YSNHGLAISPGMKTR----------------IRMG--QYEFPN 288
Query: 120 ---KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
V+ + LI+ L K P +R+ I + H W
Sbjct: 289 PEWSEVSEEVKMLIRNLLKTEPTQRM-----TITEFMNHPWIMQ 327
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding,
nucleotide-binding, serine/threonine-protein kinase,
transferase; HET: TPO; 1.72A {Caenorhabditis elegans}
PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Length = 284
Score = 29.8 bits (68), Expect = 0.38
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 32/102 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL G PPF + + Y I D + P +
Sbjct: 200 LLVGYPPFWDEDQH-RLYAQIKAGAYD--YPSPEW------------------------D 232
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
VT A+SLI ++ +P +R+ K W +
Sbjct: 233 TVTPEAKSLIDSMLTVNPKKRI-----TADQALKVPWICNRE 269
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken
structural genomics/proteomics in RSGI; 1.92A {Thermus
thermophilus} PDB: 2zdb_A
Length = 195
Score = 29.9 bits (68), Expect = 0.38
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 26 YKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILRLL 62
+ + GE L+ EG +V++ DG+ LR +
Sbjct: 4 FARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHV 45
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 30.0 bits (68), Expect = 0.39
Identities = 24/104 (23%), Positives = 30/104 (28%), Gaps = 36/104 (34%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFP- 119
LL G PPF + R I +G + FP
Sbjct: 222 LLCGFPPFYSNTG---------QAISPGMKRR----------------IRLG--QYGFPN 254
Query: 120 ---KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
V+ A+ LI+ L K P ERL I H W
Sbjct: 255 PEWSEVSEDAKQLIRLLLKTDPTERL-----TITQFMNHPWINQ 293
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional
regulat transcription; HET: PR3; 2.3A {Listeria
monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A*
1omi_A
Length = 238
Score = 29.6 bits (67), Expect = 0.41
Identities = 6/63 (9%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 8 NLDTLQVKEMVES--MHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIK---DGK--ILR 60
N + K+ +E+ + ++ + + + +G ++ +G L+
Sbjct: 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQ 62
Query: 61 LLS 63
Sbjct: 63 YYK 65
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 29.6 bits (67), Expect = 0.51
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 33/102 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PF + + + II + +
Sbjct: 226 LLSGCLPFYGTKE--RLFEGIIKGKYK--MNPRQW------------------------S 257
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFD 162
H++ +A+ L++ + PAER+ + + H W + D
Sbjct: 258 HISESAKDLVRRMLMLDPAERI-----TVYEALNHPWLKERD 294
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 29.6 bits (67), Expect = 0.52
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 94 PFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIK 153
PF + ++T + N+ + +++ + SP ER ++I
Sbjct: 226 PFSTQMERVRTLTDVRNLKFPPLF--TQKYPCEYVMVQDMLSPSPMERP-----EAINII 278
Query: 154 KHKWFQGFD 162
++ F+ D
Sbjct: 279 ENAVFEDLD 287
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 29.5 bits (67), Expect = 0.54
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 32/101 (31%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LLSG PPF N+ + F P + +
Sbjct: 215 LLSGTPPFYGKNEY-DILKRVETGKYA--FDLPQW------------------------R 247
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGF 161
++ A+ LI+ + P+ R+ +H W Q +
Sbjct: 248 TISDDAKDLIRKMLTFHPSLRITAT-----QCLEHPWIQKY 283
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 29.4 bits (66), Expect = 0.65
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 92 RPPFCVMNDPM-QTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIV 150
+ PF I ++ K + + A LI + P +R +
Sbjct: 237 KHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRP-----TAM 291
Query: 151 DIKKHKWFQG 160
+ +H F
Sbjct: 292 KVLRHPLFWP 301
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 29.2 bits (66), Expect = 0.76
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 30/101 (29%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNI-FSRPPFCVMNDPMQTYNMIINVGIDKIPFP 119
LL G PPF + + M + + F P +
Sbjct: 191 LLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEW------------------------ 226
Query: 120 KHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
V+ + LI+ L K P +R+ I + H W
Sbjct: 227 SEVSEEVKMLIRNLLKTEPTQRM-----TITEFMNHPWIMQ 262
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 28.5 bits (64), Expect = 1.2
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
+ P+ + ++ +P + QS +K + +R Y
Sbjct: 226 QFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYN-----K 280
Query: 152 IKKHKWFQGFD 162
+ +H + + ++
Sbjct: 281 LLEHSFIKRYE 291
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 28.8 bits (65), Expect = 1.2
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 32/100 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL G PPF + + Y I D F P +
Sbjct: 206 LLVGYPPFWDEDQ-HRLYQQIKAGAYD--FPSPEW------------------------D 238
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
VT A+ LI + +P++R+ + KH W
Sbjct: 239 TVTPEAKDLINKMLTINPSKRITAA-----EALKHPWISH 273
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 28.7 bits (64), Expect = 1.2
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 3 NDFLKNLDTLQVKEMVESMHQAEYKADNYVITEGEAGNDLFVSAEGEFQVIKDGKI 58
+ L + E+V ++ A + GE G+ +F EG V +
Sbjct: 233 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV 288
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 27.9 bits (63), Expect = 1.7
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 32/100 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL G PPF + + + I + F P +
Sbjct: 200 LLCGYPPFYEETES-KLFEKIKEGYYE--FESPFW------------------------D 232
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQG 160
++ +A+ I L ++ P ER + H W G
Sbjct: 233 DISESAKDFICHLLEKDPNERYTCE-----KALSHPWIDG 267
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.8
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 161 FDWDGLRNQTLTPPIIPVASILRD 184
F + G+R P SIL D
Sbjct: 304 F-FIGVRCYEAYPNTSLPPSILED 326
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 28.1 bits (63), Expect = 1.9
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 32/99 (32%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
LL+G PPF + MI+ FS P +
Sbjct: 298 LLAGSPPF-WHRRQILMLRMIMEGQYQ--FSSPEW------------------------D 330
Query: 121 HVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQ 159
+ T + LI L + P RL +H +F+
Sbjct: 331 DRSSTVKDLISRLLQVDPEARL-----TAEQALQHPFFE 364
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein;
1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Length = 337
Score = 27.7 bits (61), Expect = 2.5
Identities = 8/98 (8%), Positives = 21/98 (21%), Gaps = 15/98 (15%)
Query: 93 PPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLG----YQRGG 148
+ + ++ D+ LI+ P + +Q
Sbjct: 4 KNYQMSTGVTAVVQKVVEACQDE--------SKRLDLIEIARSYPPNQLRNMQRTFQAIT 55
Query: 149 IVDIKKH--KWFQGFDWDGLRNQTLTPPIIPVASILRD 184
+ K + P + ++R
Sbjct: 56 GTFLDAFLKKHLSKDFESLVL-MLYKPRAQLLCELIRG 92
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 27.5 bits (61), Expect = 2.6
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 98 MNDPMQTYNMIINV--GIDKIPFPKHVTR---TAQSLIKALCKESPAERLGYQRGGIVDI 152
+ T + + + + FP T+ +++ + SP ER DI
Sbjct: 269 LLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERP-----EATDI 323
Query: 153 KKHKWFQ 159
++ F+
Sbjct: 324 IENAIFE 330
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 27.0 bits (60), Expect = 3.6
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 108 IINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVDIKKHKWFQGFDWDGLR 167
I+N G IP SLI+A+ + +P ERL I ++ + R
Sbjct: 261 IVN-GKYSIPPHDTQYTVFHSLIRAMLQVNPEERL-----SIAEVVHQLQ----EIAAAR 310
Query: 168 NQTLTPPIIPVAS 180
N PI +
Sbjct: 311 NVNPKSPITELLE 323
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: BX7;
2.60A {Homo sapiens}
Length = 396
Score = 27.1 bits (60), Expect = 3.9
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 61 LLSGRPPFCVMNDPMQTYNMIINVGIDNIFSRPPFCVMNDPMQTYNMIINVGIDKIPFPK 120
+G PF P + ++ + I S V + +P
Sbjct: 216 AATGSLPFRPFEGPRRNKEVMYKI-ITGKPSGAISGVQKAENGPIDW-----SGDMPVSC 269
Query: 121 HVTRTAQSLIKALCK----ESPAERLGYQR 146
++R Q L+ + + G+ +
Sbjct: 270 SLSRGLQVLLTPVLANILEADQEKCWGFDQ 299
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 27.2 bits (60), Expect = 4.2
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 4 DFLKNLDTLQVKEMVESMHQAEYKA-----DNYVITE------GEAGNDLFVSAEGEFQV 52
DFL VK++ + H A +A D ++ TE E G D V + G
Sbjct: 283 DFLSGFVRENVKQLADMSHAAGKEAMMFLGDQWIGTEPYKDGFDELGLDAVVGSIG---- 338
Query: 53 IKDGKILRLLSGRP 66
DG R+++ P
Sbjct: 339 --DGTTTRMIADIP 350
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 26.8 bits (60), Expect = 4.4
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
R P+ P Q ++ ++P + K++ ER Y +
Sbjct: 210 RFPYDSWGTPFQQLKQVVEEPSPQLP-ADKFSAEFVDFTSQCLKKNSKERPTYP-----E 263
Query: 152 IKKHKWFQGFD 162
+ +H +F +
Sbjct: 264 LMQHPFFTLHE 274
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A
2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 26.6 bits (59), Expect = 4.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 23 QAEYKADNYVITEG----EAGNDLFVSAEGEFQVIKDGKILRL 61
++ EG + G+ V+ E E G+ILR+
Sbjct: 9 LFTKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRI 51
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 26.6 bits (59), Expect = 5.0
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
R P+ P Q ++ ++P + K++ ER Y +
Sbjct: 254 RFPYDSWGTPFQQLKQVVEEPSPQLP-ADKFSAEFVDFTSQCLKKNSKERPTYP-----E 307
Query: 152 IKKHKWFQGFD 162
+ +H +F +
Sbjct: 308 LMQHPFFTLHE 318
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 26.4 bits (59), Expect = 6.3
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 5 FLKNLDTLQ----VKEMVESMH---QAEYKADNYVITEGEA 38
+ NL+ ++ V+++V++ Q D Y + G
Sbjct: 213 KVGNLEAVRDFTDVRDIVQAYWLLSQYGKTGDVYNVCSGIG 253
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase,
nucleus, meiosis, mitosis, cytoplasm, metal-binding,
phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB:
2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A*
2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A*
4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Length = 279
Score = 26.1 bits (58), Expect = 6.5
Identities = 8/68 (11%), Positives = 17/68 (25%), Gaps = 8/68 (11%)
Query: 92 RPPFCVMNDPMQTYNMIINVGIDKIPFPKHVTRTAQSLIKALCKESPAERLGYQRGGIVD 151
PPF + + I P + +I + R + +
Sbjct: 213 MPPFTAFSQK-ELAGKIREGKFR--RIPYRYSDELNEIITRMLNLKDYHRP-----SVEE 264
Query: 152 IKKHKWFQ 159
I ++
Sbjct: 265 ILENPLIL 272
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Length = 825
Score = 26.2 bits (58), Expect = 7.1
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 139 AERLGYQRGGIVDIKKHKWFQGFDWDG 165
A L + F+GFDW
Sbjct: 571 ANALRDMYQKDGKAEMAAQFEGFDWKT 597
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.423
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,900,385
Number of extensions: 166796
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 160
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)