Query psy3185
Match_columns 298
No_of_seqs 278 out of 1502
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:29:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2798|consensus 100.0 2.8E-79 6E-84 554.7 24.4 294 2-298 36-336 (369)
2 PF07942 N2227: N2227-like pro 100.0 1.1E-73 2.4E-78 520.1 21.6 231 68-298 5-241 (270)
3 COG2226 UbiE Methylase involve 99.8 9.9E-20 2.2E-24 163.7 16.6 176 73-296 9-221 (238)
4 PF01209 Ubie_methyltran: ubiE 99.8 9.9E-20 2.2E-24 164.1 10.9 139 119-296 47-217 (233)
5 PLN02233 ubiquinone biosynthes 99.8 2.4E-18 5.2E-23 157.5 17.8 142 119-296 73-245 (261)
6 PF13489 Methyltransf_23: Meth 99.8 5.9E-19 1.3E-23 147.6 12.3 130 119-297 22-161 (161)
7 PRK11207 tellurite resistance 99.8 1.8E-18 3.8E-23 152.0 15.8 136 119-296 30-167 (197)
8 PRK10258 biotin biosynthesis p 99.8 6.3E-18 1.4E-22 153.2 18.2 171 73-296 5-184 (251)
9 PLN02396 hexaprenyldihydroxybe 99.8 9.1E-18 2E-22 157.9 19.3 182 78-297 81-287 (322)
10 PRK11036 putative S-adenosyl-L 99.8 9.2E-18 2E-22 152.8 17.5 141 119-297 44-205 (255)
11 PRK14103 trans-aconitate 2-met 99.7 4.2E-17 9.1E-22 148.4 15.7 130 119-295 29-180 (255)
12 PF08241 Methyltransf_11: Meth 99.7 1.9E-17 4.1E-22 126.1 10.7 93 124-258 1-94 (95)
13 TIGR00477 tehB tellurite resis 99.7 1.1E-16 2.4E-21 140.3 16.2 131 120-296 31-166 (195)
14 TIGR02752 MenG_heptapren 2-hep 99.7 1E-16 2.2E-21 143.2 15.8 180 74-296 4-215 (231)
15 PLN02244 tocopherol O-methyltr 99.7 2.6E-16 5.6E-21 149.3 19.1 141 119-297 118-276 (340)
16 PF12847 Methyltransf_18: Meth 99.7 2.3E-16 4.9E-21 124.8 11.5 102 120-259 2-109 (112)
17 COG2227 UbiG 2-polyprenyl-3-me 99.7 8E-17 1.7E-21 143.5 9.5 139 118-296 58-212 (243)
18 PRK15068 tRNA mo(5)U34 methylt 99.7 5.6E-16 1.2E-20 146.0 15.9 138 119-296 122-271 (322)
19 PF03848 TehB: Tellurite resis 99.7 1E-15 2.2E-20 133.7 16.0 145 102-296 17-166 (192)
20 PRK12335 tellurite resistance 99.7 5.5E-16 1.2E-20 143.7 15.2 134 120-296 121-256 (287)
21 PTZ00098 phosphoethanolamine N 99.7 1.3E-15 2.8E-20 139.6 17.0 137 119-296 52-199 (263)
22 TIGR03840 TMPT_Se_Te thiopurin 99.7 2.1E-15 4.6E-20 134.2 17.0 148 119-296 34-184 (213)
23 PRK13255 thiopurine S-methyltr 99.7 1.5E-15 3.2E-20 135.7 15.8 163 99-296 22-187 (218)
24 PRK01683 trans-aconitate 2-met 99.7 1.7E-15 3.7E-20 137.7 16.0 133 119-296 31-184 (258)
25 TIGR00452 methyltransferase, p 99.7 3E-15 6.4E-20 140.4 17.2 139 119-296 121-270 (314)
26 PRK05785 hypothetical protein; 99.7 1.7E-15 3.7E-20 135.9 14.9 133 73-260 7-146 (226)
27 PRK15451 tRNA cmo(5)U34 methyl 99.7 3.1E-15 6.7E-20 135.8 15.8 136 119-294 56-225 (247)
28 TIGR00740 methyltransferase, p 99.7 4.2E-15 9.1E-20 133.9 16.4 137 119-295 53-223 (239)
29 PF05724 TPMT: Thiopurine S-me 99.7 2.3E-15 4.9E-20 134.4 14.3 148 119-296 37-187 (218)
30 PLN02490 MPBQ/MSBQ methyltrans 99.7 3E-15 6.4E-20 141.6 15.7 136 119-296 113-253 (340)
31 KOG1540|consensus 99.6 3.5E-15 7.6E-20 133.6 14.8 142 118-295 99-277 (296)
32 smart00828 PKS_MT Methyltransf 99.6 4.5E-15 9.7E-20 132.0 15.3 136 122-296 2-141 (224)
33 KOG1270|consensus 99.6 1.7E-15 3.8E-20 136.1 11.2 186 73-295 35-245 (282)
34 PF13847 Methyltransf_31: Meth 99.6 3.7E-15 8E-20 125.1 12.6 105 119-262 3-111 (152)
35 PRK00216 ubiE ubiquinone/menaq 99.6 4E-14 8.6E-19 126.0 18.7 184 72-297 8-223 (239)
36 PLN02336 phosphoethanolamine N 99.6 1.8E-14 3.9E-19 142.1 17.6 138 119-296 266-411 (475)
37 PRK13256 thiopurine S-methyltr 99.6 2.4E-14 5.1E-19 128.3 16.3 158 101-294 30-192 (226)
38 PF02353 CMAS: Mycolic acid cy 99.6 3.5E-14 7.7E-19 130.8 18.0 150 103-297 50-215 (273)
39 TIGR02021 BchM-ChlM magnesium 99.6 3.2E-14 7E-19 126.4 16.8 137 119-297 55-204 (219)
40 TIGR01983 UbiG ubiquinone bios 99.6 5.9E-14 1.3E-18 124.5 17.5 139 119-296 45-200 (224)
41 PRK11873 arsM arsenite S-adeno 99.6 2.6E-14 5.7E-19 131.0 15.7 137 119-296 77-227 (272)
42 PRK05134 bifunctional 3-demeth 99.6 1.2E-13 2.6E-18 123.6 18.8 149 104-296 37-202 (233)
43 PLN02585 magnesium protoporphy 99.6 5.8E-14 1.3E-18 131.8 16.0 141 119-297 144-297 (315)
44 PRK06202 hypothetical protein; 99.6 6.3E-14 1.4E-18 125.7 15.3 135 119-297 60-220 (232)
45 TIGR02072 BioC biotin biosynth 99.6 3.4E-14 7.5E-19 126.2 13.0 132 120-295 35-172 (240)
46 KOG1271|consensus 99.6 4.4E-14 9.5E-19 120.9 12.3 159 88-297 42-203 (227)
47 PRK00107 gidB 16S rRNA methylt 99.6 2.9E-13 6.4E-18 118.1 17.6 119 120-296 46-166 (187)
48 PRK08317 hypothetical protein; 99.6 2.1E-13 4.5E-18 120.9 16.9 150 103-296 7-173 (241)
49 TIGR00138 gidB 16S rRNA methyl 99.6 1.7E-13 3.8E-18 118.9 15.9 119 120-296 43-166 (181)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.3E-13 5E-18 119.9 16.7 137 119-296 39-207 (223)
51 PRK11705 cyclopropane fatty ac 99.5 2E-13 4.3E-18 131.6 16.7 132 119-296 167-309 (383)
52 PF13649 Methyltransf_25: Meth 99.5 2.9E-14 6.3E-19 111.5 8.7 93 123-255 1-101 (101)
53 PF08242 Methyltransf_12: Meth 99.5 2.5E-15 5.4E-20 116.8 2.1 97 124-257 1-99 (99)
54 TIGR02081 metW methionine bios 99.5 2.5E-13 5.5E-18 118.6 14.4 130 120-297 14-165 (194)
55 PLN02336 phosphoethanolamine N 99.5 3E-13 6.5E-18 133.5 15.1 135 119-295 37-178 (475)
56 COG2230 Cfa Cyclopropane fatty 99.5 9.5E-13 2.1E-17 120.9 16.7 150 103-297 60-221 (283)
57 PRK11088 rrmA 23S rRNA methylt 99.5 3E-13 6.4E-18 124.4 13.0 105 103-263 74-183 (272)
58 PRK07580 Mg-protoporphyrin IX 99.5 2.2E-12 4.8E-17 114.8 17.9 137 119-297 63-212 (230)
59 TIGR00537 hemK_rel_arch HemK-r 99.5 1.2E-12 2.7E-17 112.8 14.8 123 120-297 20-163 (179)
60 PRK00121 trmB tRNA (guanine-N( 99.5 5.5E-13 1.2E-17 117.6 11.5 125 119-295 40-177 (202)
61 TIGR03438 probable methyltrans 99.4 1.5E-12 3.3E-17 121.6 14.6 115 100-258 50-174 (301)
62 PRK00517 prmA ribosomal protei 99.4 2.8E-12 6.1E-17 116.6 14.9 117 119-297 119-236 (250)
63 TIGR00406 prmA ribosomal prote 99.4 3.9E-12 8.5E-17 118.1 15.3 121 119-296 159-280 (288)
64 smart00138 MeTrc Methyltransfe 99.4 1.7E-12 3.7E-17 119.1 12.1 128 119-262 99-242 (264)
65 PRK14968 putative methyltransf 99.4 7.9E-12 1.7E-16 107.5 15.1 127 119-296 23-170 (188)
66 TIGR03587 Pse_Me-ase pseudamin 99.4 3.6E-12 7.9E-17 112.7 13.2 92 120-258 44-139 (204)
67 TIGR02469 CbiT precorrin-6Y C5 99.4 6.4E-12 1.4E-16 100.4 13.1 98 120-259 20-120 (124)
68 PRK04266 fibrillarin; Provisio 99.4 8.9E-12 1.9E-16 111.9 14.8 158 84-297 46-208 (226)
69 PRK06922 hypothetical protein; 99.4 2.8E-12 6.1E-17 129.1 12.2 102 119-260 418-536 (677)
70 TIGR01177 conserved hypothetic 99.4 6.4E-12 1.4E-16 118.7 13.7 122 119-296 182-312 (329)
71 PRK14967 putative methyltransf 99.4 2.2E-11 4.8E-16 108.7 15.8 100 119-259 36-157 (223)
72 PRK08287 cobalt-precorrin-6Y C 99.4 3.2E-11 6.9E-16 104.7 16.0 120 119-295 31-152 (187)
73 PF13659 Methyltransf_26: Meth 99.3 7.1E-12 1.5E-16 99.8 10.4 103 121-261 2-115 (117)
74 TIGR03534 RF_mod_PrmC protein- 99.3 3.1E-11 6.7E-16 108.7 15.7 123 120-296 88-238 (251)
75 TIGR00091 tRNA (guanine-N(7)-) 99.3 1.6E-11 3.5E-16 107.5 13.0 101 120-259 17-130 (194)
76 PRK13944 protein-L-isoaspartat 99.3 2.2E-11 4.7E-16 107.6 13.6 109 103-259 60-171 (205)
77 PRK00377 cbiT cobalt-precorrin 99.3 2.9E-11 6.2E-16 106.1 13.9 123 119-295 40-166 (198)
78 TIGR02716 C20_methyl_CrtF C-20 99.3 6.3E-11 1.4E-15 110.6 17.0 136 119-296 149-303 (306)
79 TIGR00080 pimt protein-L-isoas 99.3 2.8E-11 6E-16 107.5 13.1 108 103-259 65-175 (215)
80 KOG4300|consensus 99.3 3E-11 6.5E-16 105.5 11.9 114 103-259 64-180 (252)
81 PRK13942 protein-L-isoaspartat 99.3 4.8E-11 1E-15 106.1 13.4 109 102-259 63-174 (212)
82 PF05401 NodS: Nodulation prot 99.3 1.6E-11 3.5E-16 107.0 9.8 124 119-289 43-170 (201)
83 PHA03411 putative methyltransf 99.3 4.9E-11 1.1E-15 109.4 13.4 124 120-295 65-210 (279)
84 PF08003 Methyltransf_9: Prote 99.3 9.9E-11 2.1E-15 108.2 15.3 171 72-296 67-264 (315)
85 PF07021 MetW: Methionine bios 99.2 1.7E-10 3.6E-15 100.3 14.0 127 119-297 13-165 (193)
86 PTZ00146 fibrillarin; Provisio 99.2 7.5E-11 1.6E-15 109.1 12.3 152 85-296 107-268 (293)
87 PRK00312 pcm protein-L-isoaspa 99.2 1.8E-10 3.8E-15 102.0 13.5 108 103-259 66-173 (212)
88 PF05175 MTS: Methyltransferas 99.2 3.4E-10 7.4E-15 97.0 14.8 110 102-259 22-138 (170)
89 cd02440 AdoMet_MTases S-adenos 99.2 1.5E-10 3.2E-15 87.4 10.8 99 122-259 1-102 (107)
90 PLN02232 ubiquinone biosynthes 99.2 3.9E-11 8.4E-16 102.0 8.3 90 207-296 27-144 (160)
91 COG4106 Tam Trans-aconitate me 99.2 6.6E-11 1.4E-15 104.1 8.6 115 92-259 11-127 (257)
92 KOG2361|consensus 99.2 1.6E-10 3.4E-15 103.1 10.7 180 75-296 26-234 (264)
93 PRK09328 N5-glutamine S-adenos 99.2 9.6E-10 2.1E-14 100.6 16.2 123 119-295 108-258 (275)
94 PRK07402 precorrin-6B methylas 99.2 5.4E-10 1.2E-14 97.7 13.7 112 103-261 28-142 (196)
95 PRK14121 tRNA (guanine-N(7)-)- 99.2 5.1E-10 1.1E-14 107.5 14.5 145 72-259 69-233 (390)
96 PRK15001 SAM-dependent 23S rib 99.2 4.6E-10 1E-14 107.8 13.9 115 105-260 218-339 (378)
97 PRK09489 rsmC 16S ribosomal RN 99.2 3.6E-10 7.9E-15 107.4 13.1 100 120-261 197-303 (342)
98 TIGR03533 L3_gln_methyl protei 99.2 6.9E-10 1.5E-14 102.9 14.3 122 120-296 122-271 (284)
99 PF06325 PrmA: Ribosomal prote 99.2 7.2E-10 1.6E-14 103.2 14.1 131 102-297 150-281 (295)
100 PRK14966 unknown domain/N5-glu 99.2 9.3E-10 2E-14 106.4 15.3 121 120-295 252-401 (423)
101 TIGR03704 PrmC_rel_meth putati 99.1 1E-09 2.3E-14 100.0 14.9 121 120-296 87-237 (251)
102 COG2264 PrmA Ribosomal protein 99.1 7.8E-10 1.7E-14 102.6 13.9 134 103-297 152-286 (300)
103 PF05148 Methyltransf_8: Hypot 99.1 1.2E-09 2.7E-14 96.0 12.3 143 74-297 41-183 (219)
104 PRK11188 rrmJ 23S rRNA methylt 99.1 4.9E-10 1.1E-14 99.4 9.9 91 119-259 51-163 (209)
105 COG4123 Predicted O-methyltran 99.1 1.8E-09 3.9E-14 97.7 12.9 126 119-296 44-191 (248)
106 PRK11805 N5-glutamine S-adenos 99.1 4E-09 8.6E-14 98.9 15.6 120 121-295 135-282 (307)
107 PRK00811 spermidine synthase; 99.1 1E-09 2.2E-14 101.8 11.2 107 119-259 76-189 (283)
108 PF06080 DUF938: Protein of un 99.1 3.3E-09 7.3E-14 93.3 13.7 161 101-296 12-189 (204)
109 PLN03075 nicotianamine synthas 99.1 1.5E-09 3.3E-14 100.8 12.0 104 119-259 123-231 (296)
110 smart00650 rADc Ribosomal RNA 99.1 1.5E-09 3.3E-14 92.8 11.1 97 119-258 13-110 (169)
111 PRK13943 protein-L-isoaspartat 99.1 1.8E-09 3.9E-14 101.8 12.4 96 119-259 80-178 (322)
112 KOG1541|consensus 99.0 1E-09 2.2E-14 96.9 9.3 119 119-292 50-180 (270)
113 COG4976 Predicted methyltransf 99.0 5.6E-10 1.2E-14 99.0 7.5 130 120-297 126-263 (287)
114 PHA03412 putative methyltransf 99.0 3.4E-09 7.3E-14 95.4 12.6 125 120-294 50-197 (241)
115 PF05891 Methyltransf_PK: AdoM 99.0 2E-09 4.2E-14 95.4 10.9 136 119-297 55-199 (218)
116 TIGR00438 rrmJ cell division p 99.0 1.4E-09 3E-14 94.5 9.0 93 118-260 31-145 (188)
117 KOG2940|consensus 99.0 5.8E-10 1.2E-14 99.0 6.5 172 80-295 34-223 (325)
118 TIGR00536 hemK_fam HemK family 99.0 1.4E-08 3E-13 94.1 15.3 120 121-294 116-264 (284)
119 TIGR00417 speE spermidine synt 99.0 6E-09 1.3E-13 95.9 12.5 105 120-259 73-184 (270)
120 PRK01544 bifunctional N5-gluta 99.0 5.9E-09 1.3E-13 104.0 13.4 123 120-295 139-289 (506)
121 PRK03612 spermidine synthase; 99.0 7.1E-09 1.5E-13 103.8 13.4 133 119-293 297-438 (521)
122 PF01135 PCMT: Protein-L-isoas 98.9 1.1E-08 2.3E-13 91.0 12.4 110 101-259 58-170 (209)
123 PRK01581 speE spermidine synth 98.9 1.8E-08 4E-13 95.9 14.1 108 119-259 150-266 (374)
124 PLN02781 Probable caffeoyl-CoA 98.9 1.2E-08 2.6E-13 92.1 11.5 108 103-259 59-176 (234)
125 PRK04457 spermidine synthase; 98.9 8.5E-09 1.8E-13 94.6 10.3 101 120-258 67-174 (262)
126 PF05219 DREV: DREV methyltran 98.9 1.3E-08 2.7E-13 92.3 11.2 130 119-296 94-237 (265)
127 PRK10901 16S rRNA methyltransf 98.9 3.3E-08 7.2E-13 96.7 14.9 127 119-295 244-397 (427)
128 PF03291 Pox_MCEL: mRNA cappin 98.9 1.7E-08 3.7E-13 95.6 12.3 115 119-262 62-187 (331)
129 KOG3045|consensus 98.9 3.2E-08 7E-13 89.3 12.7 140 75-297 150-289 (325)
130 PRK14904 16S rRNA methyltransf 98.9 3.3E-08 7.1E-13 97.3 13.4 100 119-258 250-374 (445)
131 PRK13168 rumA 23S rRNA m(5)U19 98.8 7.2E-08 1.6E-12 94.8 15.3 100 119-262 297-402 (443)
132 PLN02366 spermidine synthase 98.8 2.7E-08 5.8E-13 93.3 11.5 106 119-259 91-204 (308)
133 PRK15128 23S rRNA m(5)C1962 me 98.8 4.4E-08 9.6E-13 94.9 13.2 121 119-288 220-354 (396)
134 COG2242 CobL Precorrin-6B meth 98.8 1.3E-07 2.7E-12 82.0 14.5 122 118-296 33-158 (187)
135 PRK14901 16S rRNA methyltransf 98.8 7.7E-08 1.7E-12 94.3 14.2 101 119-258 252-381 (434)
136 PRK11783 rlmL 23S rRNA m(2)G24 98.8 5.8E-08 1.3E-12 100.5 13.4 126 120-296 539-677 (702)
137 KOG2899|consensus 98.8 9.5E-08 2.1E-12 85.6 12.3 171 119-295 58-253 (288)
138 PF01596 Methyltransf_3: O-met 98.8 2.1E-07 4.5E-12 82.5 14.2 108 103-259 36-153 (205)
139 KOG3010|consensus 98.8 1.7E-08 3.6E-13 90.3 7.1 95 122-255 36-130 (261)
140 PRK14902 16S rRNA methyltransf 98.8 1.9E-07 4.1E-12 91.8 14.8 101 119-258 250-376 (444)
141 PRK14903 16S rRNA methyltransf 98.7 9.6E-08 2.1E-12 93.6 11.7 101 119-258 237-363 (431)
142 COG2518 Pcm Protein-L-isoaspar 98.7 2.6E-07 5.7E-12 81.6 12.5 97 118-259 71-167 (209)
143 PF05185 PRMT5: PRMT5 arginine 98.7 1.4E-07 3E-12 92.8 11.8 116 103-258 170-294 (448)
144 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1.1E-07 2.3E-12 87.4 10.0 101 119-258 71-196 (264)
145 COG2521 Predicted archaeal met 98.7 1.1E-07 2.4E-12 84.8 9.5 150 101-296 118-274 (287)
146 COG1041 Predicted DNA modifica 98.7 2.2E-07 4.8E-12 87.5 12.1 107 118-262 196-311 (347)
147 PLN02476 O-methyltransferase 98.7 3.1E-07 6.8E-12 84.8 12.6 104 120-266 119-232 (278)
148 TIGR00479 rumA 23S rRNA (uraci 98.7 2.8E-07 6E-12 90.2 12.9 109 102-258 279-393 (431)
149 PLN02672 methionine S-methyltr 98.7 2.8E-07 6.1E-12 98.4 13.9 139 120-296 119-300 (1082)
150 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.7 6.7E-08 1.4E-12 88.2 7.9 179 99-297 38-237 (256)
151 PRK00274 ksgA 16S ribosomal RN 98.6 1.2E-07 2.6E-12 87.3 9.4 53 103-159 30-82 (272)
152 PRK04148 hypothetical protein; 98.6 3.4E-07 7.4E-12 75.6 11.0 99 102-253 3-103 (134)
153 COG2890 HemK Methylase of poly 98.6 7.3E-07 1.6E-11 82.7 14.2 119 122-295 113-259 (280)
154 PRK03522 rumB 23S rRNA methylu 98.6 3E-07 6.4E-12 86.5 10.8 73 120-231 174-247 (315)
155 TIGR00563 rsmB ribosomal RNA s 98.6 3.4E-07 7.3E-12 89.6 11.4 102 119-258 238-365 (426)
156 PF01739 CheR: CheR methyltran 98.6 3E-07 6.4E-12 81.0 9.8 129 119-262 31-175 (196)
157 KOG1975|consensus 98.6 1.9E-07 4.1E-12 86.8 8.6 124 101-262 104-238 (389)
158 PRK14896 ksgA 16S ribosomal RN 98.6 3.8E-07 8.3E-12 83.4 10.5 82 103-231 17-98 (258)
159 PRK10909 rsmD 16S rRNA m(2)G96 98.6 6.9E-07 1.5E-11 78.8 11.5 98 120-258 54-156 (199)
160 PF11968 DUF3321: Putative met 98.6 6.5E-07 1.4E-11 79.3 11.2 134 102-297 34-179 (219)
161 COG2519 GCD14 tRNA(1-methylade 98.5 1.2E-06 2.6E-11 79.2 12.3 118 98-263 77-197 (256)
162 PRK10611 chemotaxis methyltran 98.5 5.1E-07 1.1E-11 83.9 9.2 132 120-262 116-262 (287)
163 PLN02589 caffeoyl-CoA O-methyl 98.5 1.4E-06 3.1E-11 79.3 11.9 114 103-266 70-194 (247)
164 COG2813 RsmC 16S RNA G1207 met 98.5 1.8E-06 3.9E-11 80.1 12.4 108 105-257 148-262 (300)
165 TIGR00478 tly hemolysin TlyA f 98.5 1.1E-06 2.4E-11 79.1 10.7 38 119-156 75-113 (228)
166 PF08704 GCD14: tRNA methyltra 98.5 3.3E-06 7.2E-11 76.8 13.8 151 86-296 11-168 (247)
167 KOG1269|consensus 98.5 4E-07 8.6E-12 87.2 8.0 102 120-259 111-213 (364)
168 KOG1499|consensus 98.5 8.4E-07 1.8E-11 83.4 9.6 101 119-258 60-164 (346)
169 PF03141 Methyltransf_29: Puta 98.4 1.1E-07 2.4E-12 93.1 3.5 145 103-296 101-250 (506)
170 PF02390 Methyltransf_4: Putat 98.4 1.3E-06 2.8E-11 76.8 9.9 101 120-259 18-131 (195)
171 PF00891 Methyltransf_2: O-met 98.4 2.2E-06 4.9E-11 77.1 11.2 96 119-263 100-201 (241)
172 COG2263 Predicted RNA methylas 98.4 1.1E-06 2.4E-11 76.2 8.7 70 119-231 45-115 (198)
173 TIGR00095 RNA methyltransferas 98.4 3.6E-06 7.8E-11 73.6 11.6 100 120-259 50-157 (189)
174 PTZ00338 dimethyladenosine tra 98.4 1.7E-06 3.7E-11 80.7 10.1 85 103-231 24-108 (294)
175 TIGR02085 meth_trns_rumB 23S r 98.4 9.4E-06 2E-10 78.2 15.4 99 120-262 234-336 (374)
176 TIGR00755 ksgA dimethyladenosi 98.4 2.2E-06 4.7E-11 78.1 10.4 53 103-159 17-69 (253)
177 KOG1661|consensus 98.3 2.6E-06 5.6E-11 75.0 8.9 123 99-262 68-195 (237)
178 PLN02823 spermine synthase 98.3 3.2E-06 6.8E-11 80.3 10.1 107 120-262 104-222 (336)
179 COG0500 SmtA SAM-dependent met 98.3 9.5E-06 2.1E-10 63.4 10.7 98 123-260 52-154 (257)
180 COG4122 Predicted O-methyltran 98.3 7.7E-06 1.7E-10 73.0 11.1 98 119-258 59-163 (219)
181 PF01564 Spermine_synth: Sperm 98.3 3.9E-06 8.5E-11 76.3 9.2 106 119-259 76-189 (246)
182 PF01170 UPF0020: Putative RNA 98.3 8.3E-06 1.8E-10 70.7 10.5 103 119-259 28-149 (179)
183 PRK11727 23S rRNA mA1618 methy 98.2 2.8E-05 6E-10 73.5 13.5 43 119-161 114-158 (321)
184 PRK00536 speE spermidine synth 98.2 2.1E-05 4.5E-10 72.2 12.3 98 119-259 72-169 (262)
185 PF12147 Methyltransf_20: Puta 98.2 6E-05 1.3E-09 69.6 15.0 161 91-295 110-294 (311)
186 PF10294 Methyltransf_16: Puta 98.2 1.2E-05 2.6E-10 69.3 9.6 103 119-258 45-153 (173)
187 COG0421 SpeE Spermidine syntha 98.2 2.3E-05 5.1E-10 72.6 12.1 121 103-259 61-188 (282)
188 PF02384 N6_Mtase: N-6 DNA Met 98.2 1.8E-05 3.9E-10 73.9 11.6 119 103-263 34-185 (311)
189 COG1352 CheR Methylase of chem 98.1 4.5E-05 9.8E-10 70.2 11.4 126 119-262 96-241 (268)
190 PRK04338 N(2),N(2)-dimethylgua 98.0 3.1E-05 6.8E-10 74.8 10.6 96 120-258 58-155 (382)
191 TIGR02987 met_A_Alw26 type II 98.0 6E-05 1.3E-09 75.7 11.7 44 119-162 31-84 (524)
192 PF09243 Rsm22: Mitochondrial 98.0 0.00015 3.3E-09 67.0 13.2 139 102-295 20-164 (274)
193 PRK00050 16S rRNA m(4)C1402 me 98.0 0.00015 3.2E-09 67.8 13.1 130 104-293 8-154 (296)
194 COG0030 KsgA Dimethyladenosine 98.0 5.4E-05 1.2E-09 69.3 9.7 84 103-231 18-102 (259)
195 PF02475 Met_10: Met-10+ like- 97.9 5.9E-05 1.3E-09 66.6 9.7 113 88-257 84-198 (200)
196 KOG1500|consensus 97.9 0.00011 2.3E-09 69.1 11.1 99 119-258 177-279 (517)
197 COG3963 Phospholipid N-methylt 97.9 0.00018 3.9E-09 61.4 11.5 101 119-263 48-160 (194)
198 COG0220 Predicted S-adenosylme 97.9 9.4E-05 2E-09 66.6 9.9 99 121-259 50-162 (227)
199 KOG3987|consensus 97.9 1.1E-05 2.3E-10 71.1 3.4 94 118-259 111-205 (288)
200 TIGR02143 trmA_only tRNA (urac 97.9 7.1E-05 1.5E-09 71.6 9.2 39 121-159 199-237 (353)
201 PF03602 Cons_hypoth95: Conser 97.8 0.00012 2.5E-09 63.8 9.5 100 120-259 43-151 (183)
202 PRK05031 tRNA (uracil-5-)-meth 97.8 7.5E-05 1.6E-09 71.7 9.1 39 121-159 208-246 (362)
203 PF08123 DOT1: Histone methyla 97.8 0.00022 4.7E-09 63.3 10.8 114 119-263 42-160 (205)
204 PRK11783 rlmL 23S rRNA m(2)G24 97.8 0.00012 2.6E-09 76.1 10.5 116 102-258 176-344 (702)
205 KOG3178|consensus 97.8 0.00026 5.5E-09 66.9 11.0 129 121-295 179-326 (342)
206 PF02527 GidB: rRNA small subu 97.7 0.0018 3.9E-08 56.4 15.0 131 80-259 7-146 (184)
207 KOG0820|consensus 97.7 0.00026 5.7E-09 64.8 9.7 84 103-230 46-129 (315)
208 KOG2904|consensus 97.7 0.00036 7.7E-09 64.0 10.3 61 94-159 128-190 (328)
209 KOG2352|consensus 97.6 0.00047 1E-08 67.7 11.0 100 121-260 50-160 (482)
210 COG4076 Predicted RNA methylas 97.6 0.00024 5.2E-09 61.8 7.6 115 91-258 15-132 (252)
211 PRK01544 bifunctional N5-gluta 97.6 0.00037 8.1E-09 69.8 10.2 103 118-259 346-460 (506)
212 TIGR03439 methyl_EasF probable 97.6 0.00085 1.8E-08 63.4 11.7 134 80-258 43-194 (319)
213 PF10672 Methyltrans_SAM: S-ad 97.5 0.0019 4.1E-08 60.2 13.2 121 120-289 124-254 (286)
214 KOG3420|consensus 97.5 0.00013 2.8E-09 61.0 4.9 42 118-159 47-89 (185)
215 PF01728 FtsJ: FtsJ-like methy 97.5 0.00014 3.1E-09 62.5 5.0 34 119-152 23-59 (181)
216 PF09445 Methyltransf_15: RNA 97.5 0.00039 8.4E-09 59.5 7.2 71 122-230 2-75 (163)
217 PF13679 Methyltransf_32: Meth 97.5 0.0015 3.2E-08 54.2 10.5 44 118-161 24-73 (141)
218 TIGR00308 TRM1 tRNA(guanine-26 97.4 0.00063 1.4E-08 65.7 9.0 97 120-259 45-145 (374)
219 COG1092 Predicted SAM-dependen 97.4 0.0018 3.8E-08 62.8 11.5 104 119-259 217-334 (393)
220 PF04816 DUF633: Family of unk 97.4 0.0049 1.1E-07 54.7 13.5 120 123-297 1-122 (205)
221 PF03059 NAS: Nicotianamine sy 97.4 0.002 4.4E-08 59.6 11.0 103 120-259 121-228 (276)
222 PF00398 RrnaAD: Ribosomal RNA 97.3 0.0011 2.5E-08 60.6 9.2 53 103-159 18-70 (262)
223 PRK11760 putative 23S rRNA C24 97.3 0.0019 4.1E-08 61.4 10.0 34 118-151 210-243 (357)
224 KOG3191|consensus 97.2 0.0089 1.9E-07 51.9 12.6 40 120-159 44-86 (209)
225 KOG1709|consensus 97.2 0.0031 6.8E-08 56.1 10.1 113 101-258 88-203 (271)
226 PRK11933 yebU rRNA (cytosine-C 97.2 0.0041 8.8E-08 61.8 11.7 44 119-162 113-159 (470)
227 KOG1663|consensus 97.2 0.0069 1.5E-07 54.3 11.8 134 72-258 36-180 (237)
228 KOG1331|consensus 97.1 0.00041 8.9E-09 63.8 3.9 90 120-257 46-139 (293)
229 COG2265 TrmA SAM-dependent met 97.1 0.0028 6E-08 62.3 9.6 101 119-262 293-398 (432)
230 COG0357 GidB Predicted S-adeno 97.1 0.016 3.5E-07 51.7 13.4 159 80-296 26-192 (215)
231 COG2520 Predicted methyltransf 97.0 0.01 2.2E-07 56.6 12.2 142 88-294 171-315 (341)
232 PRK10742 putative methyltransf 97.0 0.0031 6.7E-08 57.4 8.1 43 121-163 90-132 (250)
233 PF05958 tRNA_U5-meth_tr: tRNA 97.0 0.0046 1E-07 59.2 9.7 53 102-159 184-236 (352)
234 PF01269 Fibrillarin: Fibrilla 97.0 0.0068 1.5E-07 54.2 9.7 63 83-154 46-111 (229)
235 COG1064 AdhP Zn-dependent alco 97.0 0.0047 1E-07 58.7 9.3 42 118-159 165-208 (339)
236 PF07757 AdoMet_MTase: Predict 96.8 0.0045 9.7E-08 49.2 6.5 74 76-150 13-89 (112)
237 KOG2915|consensus 96.7 0.014 3.1E-07 53.6 10.2 131 86-263 76-212 (314)
238 COG4262 Predicted spermidine s 96.6 0.025 5.4E-07 54.1 11.4 107 118-259 288-405 (508)
239 PF04445 SAM_MT: Putative SAM- 96.5 0.0064 1.4E-07 54.9 6.4 80 121-230 77-157 (234)
240 COG0116 Predicted N6-adenine-s 96.5 0.051 1.1E-06 52.4 12.7 105 120-262 192-345 (381)
241 TIGR01444 fkbM_fam methyltrans 96.5 0.0047 1E-07 50.5 5.0 39 122-160 1-41 (143)
242 PLN02668 indole-3-acetate carb 96.5 0.078 1.7E-06 51.4 13.8 23 274-296 283-306 (386)
243 PRK09424 pntA NAD(P) transhydr 96.4 0.022 4.8E-07 57.1 9.8 116 118-261 163-285 (509)
244 COG5459 Predicted rRNA methyla 96.3 0.1 2.2E-06 49.8 13.2 120 103-262 101-226 (484)
245 COG1189 Predicted rRNA methyla 96.2 0.066 1.4E-06 48.4 10.9 132 118-296 78-221 (245)
246 COG0742 N6-adenine-specific me 96.1 0.061 1.3E-06 47.0 10.0 40 120-159 44-84 (187)
247 COG0293 FtsJ 23S rRNA methylas 95.8 0.1 2.3E-06 46.2 10.5 129 75-259 6-157 (205)
248 KOG2730|consensus 95.8 0.016 3.5E-07 51.8 5.1 40 120-159 95-134 (263)
249 COG0144 Sun tRNA and rRNA cyto 95.8 0.19 4.1E-06 48.2 12.9 46 118-163 155-204 (355)
250 PRK13699 putative methylase; P 95.8 0.041 8.9E-07 49.5 7.8 74 209-296 3-93 (227)
251 PF13578 Methyltransf_24: Meth 95.7 0.011 2.4E-07 46.0 3.6 92 124-258 1-102 (106)
252 PRK09880 L-idonate 5-dehydroge 95.6 0.051 1.1E-06 51.1 8.4 41 119-159 169-212 (343)
253 KOG0822|consensus 95.5 0.043 9.4E-07 54.7 7.5 116 102-258 351-475 (649)
254 TIGR00006 S-adenosyl-methyltra 95.5 0.42 9.1E-06 45.0 13.8 54 104-161 9-64 (305)
255 COG4798 Predicted methyltransf 95.5 0.11 2.4E-06 45.7 9.0 71 223-298 129-204 (238)
256 cd08232 idonate-5-DH L-idonate 95.3 0.09 1.9E-06 49.0 8.6 96 119-262 165-263 (339)
257 cd00315 Cyt_C5_DNA_methylase C 95.3 0.41 8.8E-06 44.2 12.8 38 122-159 2-40 (275)
258 KOG3201|consensus 95.3 0.074 1.6E-06 45.5 7.0 63 221-297 100-164 (201)
259 PF04672 Methyltransf_19: S-ad 95.2 0.055 1.2E-06 49.8 6.7 131 121-295 70-232 (267)
260 KOG1562|consensus 95.1 0.063 1.4E-06 50.0 6.6 109 119-262 121-237 (337)
261 PF06859 Bin3: Bicoid-interact 95.1 0.0071 1.5E-07 48.2 0.4 72 224-296 1-89 (110)
262 COG2384 Predicted SAM-dependen 94.9 0.9 2E-05 40.7 13.1 124 120-298 17-142 (226)
263 cd08283 FDH_like_1 Glutathione 94.8 0.21 4.5E-06 47.9 10.0 41 119-159 184-227 (386)
264 cd08254 hydroxyacyl_CoA_DH 6-h 94.8 0.25 5.4E-06 45.6 10.1 40 119-158 165-206 (338)
265 PF07091 FmrO: Ribosomal RNA m 94.7 0.061 1.3E-06 49.0 5.6 65 93-163 85-151 (251)
266 cd00401 AdoHcyase S-adenosyl-L 94.6 0.32 7E-06 47.6 10.6 40 119-158 201-242 (413)
267 TIGR00518 alaDH alanine dehydr 94.6 0.076 1.6E-06 51.2 6.1 36 119-154 166-203 (370)
268 KOG1501|consensus 94.5 0.051 1.1E-06 53.1 4.7 46 118-163 65-111 (636)
269 PRK01747 mnmC bifunctional tRN 94.3 0.21 4.6E-06 51.7 9.2 72 206-296 147-224 (662)
270 PF03492 Methyltransf_7: SAM d 94.2 0.36 7.9E-06 45.9 9.8 22 118-139 15-36 (334)
271 COG3897 Predicted methyltransf 94.2 0.32 7E-06 42.9 8.6 41 118-158 78-119 (218)
272 TIGR00561 pntA NAD(P) transhyd 94.1 0.2 4.2E-06 50.4 8.1 114 119-260 163-283 (511)
273 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.0 0.59 1.3E-05 43.4 10.5 101 119-258 85-216 (283)
274 cd08230 glucose_DH Glucose deh 94.0 0.3 6.5E-06 46.1 8.8 39 119-157 172-215 (355)
275 PF03446 NAD_binding_2: NAD bi 93.8 0.6 1.3E-05 39.4 9.6 59 224-296 57-117 (163)
276 PF05430 Methyltransf_30: S-ad 93.8 0.12 2.7E-06 42.1 4.9 74 206-296 31-108 (124)
277 COG0286 HsdM Type I restrictio 93.6 0.54 1.2E-05 47.1 10.1 79 77-159 146-232 (489)
278 COG1889 NOP1 Fibrillarin-like 93.5 0.18 3.8E-06 44.7 5.7 63 84-155 50-114 (231)
279 KOG4058|consensus 93.4 0.12 2.6E-06 43.6 4.4 41 119-159 72-113 (199)
280 cd05188 MDR Medium chain reduc 93.4 0.46 9.9E-06 41.9 8.4 40 119-158 134-175 (271)
281 KOG2872|consensus 93.3 1.4 3E-05 41.1 11.4 77 81-159 209-290 (359)
282 PF11312 DUF3115: Protein of u 93.2 0.51 1.1E-05 44.4 8.7 157 80-260 42-241 (315)
283 cd08245 CAD Cinnamyl alcohol d 93.0 0.6 1.3E-05 43.1 9.0 39 119-157 162-202 (330)
284 PRK07417 arogenate dehydrogena 93.0 0.65 1.4E-05 42.7 9.1 37 122-158 2-40 (279)
285 PF01861 DUF43: Protein of unk 93.0 4.2 9E-05 37.0 13.8 126 119-296 44-175 (243)
286 PF00145 DNA_methylase: C-5 cy 92.9 1.1 2.4E-05 41.3 10.5 38 122-159 2-40 (335)
287 PF01555 N6_N4_Mtase: DNA meth 92.8 0.3 6.5E-06 42.4 6.4 51 103-158 180-230 (231)
288 PLN03154 putative allyl alcoho 92.8 0.51 1.1E-05 44.7 8.2 39 119-157 158-199 (348)
289 cd08237 ribitol-5-phosphate_DH 92.7 0.63 1.4E-05 43.8 8.7 40 119-158 163-206 (341)
290 KOG2187|consensus 92.5 0.17 3.7E-06 50.4 4.7 62 72-159 362-423 (534)
291 PF00107 ADH_zinc_N: Zinc-bind 92.4 0.22 4.7E-06 39.7 4.6 89 129-262 1-90 (130)
292 TIGR00936 ahcY adenosylhomocys 92.1 1.5 3.3E-05 42.9 10.7 35 119-153 194-230 (406)
293 PHA01634 hypothetical protein 92.1 0.37 8E-06 39.7 5.3 43 118-160 27-70 (156)
294 PF03141 Methyltransf_29: Puta 91.9 0.22 4.9E-06 49.5 4.7 38 222-259 425-465 (506)
295 COG4627 Uncharacterized protei 91.8 0.055 1.2E-06 45.9 0.3 78 217-294 40-133 (185)
296 cd08261 Zn_ADH7 Alcohol dehydr 91.6 0.92 2E-05 42.2 8.4 39 119-157 159-199 (337)
297 TIGR02822 adh_fam_2 zinc-bindi 91.5 1.6 3.4E-05 41.0 9.9 41 119-159 165-207 (329)
298 TIGR00872 gnd_rel 6-phosphoglu 91.2 2.9 6.3E-05 38.8 11.3 35 122-156 2-38 (298)
299 COG1063 Tdh Threonine dehydrog 91.2 1.1 2.3E-05 42.8 8.5 40 120-159 169-211 (350)
300 KOG2651|consensus 91.2 0.76 1.7E-05 44.4 7.2 43 120-162 154-197 (476)
301 cd08234 threonine_DH_like L-th 91.2 1.6 3.4E-05 40.4 9.4 39 119-157 159-200 (334)
302 cd08295 double_bond_reductase_ 91.1 1.2 2.6E-05 41.6 8.6 40 118-157 150-192 (338)
303 cd08255 2-desacetyl-2-hydroxye 90.9 1.4 3.1E-05 39.5 8.7 41 118-158 96-139 (277)
304 PRK13699 putative methylase; P 90.9 1.1 2.3E-05 40.3 7.7 55 103-162 152-206 (227)
305 TIGR03451 mycoS_dep_FDH mycoth 90.9 1.1 2.5E-05 42.2 8.4 42 118-159 175-219 (358)
306 KOG3115|consensus 90.9 0.15 3.2E-06 45.2 2.1 35 119-153 60-96 (249)
307 PRK09599 6-phosphogluconate de 90.9 4.2 9E-05 37.8 12.0 34 122-155 2-37 (301)
308 PLN02494 adenosylhomocysteinas 90.8 1.5 3.2E-05 43.8 9.2 33 119-153 253-289 (477)
309 cd08293 PTGR2 Prostaglandin re 90.6 1.1 2.5E-05 41.6 8.0 37 121-157 156-196 (345)
310 cd08294 leukotriene_B4_DH_like 90.5 1.3 2.9E-05 40.6 8.3 40 119-158 143-185 (329)
311 COG0270 Dcm Site-specific DNA 90.5 2.6 5.5E-05 39.9 10.3 40 120-159 3-43 (328)
312 cd05278 FDH_like Formaldehyde 90.3 1.2 2.7E-05 41.3 8.0 40 119-158 167-209 (347)
313 PRK11064 wecC UDP-N-acetyl-D-m 90.3 2.1 4.4E-05 42.0 9.8 36 121-156 4-41 (415)
314 PRK11559 garR tartronate semia 90.3 3 6.4E-05 38.4 10.4 35 121-155 3-39 (296)
315 TIGR02825 B4_12hDH leukotriene 90.2 1.9 4.1E-05 39.9 9.0 40 119-158 138-180 (325)
316 PF01795 Methyltransf_5: MraW 89.7 1.5 3.2E-05 41.4 7.9 41 119-159 20-62 (310)
317 PTZ00357 methyltransferase; Pr 89.6 2.4 5.2E-05 44.1 9.6 148 74-256 652-830 (1072)
318 PRK11199 tyrA bifunctional cho 89.6 20 0.00044 34.5 16.8 79 72-151 45-132 (374)
319 PRK11524 putative methyltransf 89.5 0.62 1.3E-05 43.1 5.2 53 207-259 8-78 (284)
320 cd08285 NADP_ADH NADP(H)-depen 89.3 1.8 3.8E-05 40.6 8.2 42 118-159 165-209 (351)
321 cd08281 liver_ADH_like1 Zinc-d 89.3 1.4 3.1E-05 41.8 7.6 41 119-159 191-234 (371)
322 cd05285 sorbitol_DH Sorbitol d 89.3 2.2 4.8E-05 39.8 8.8 40 118-157 161-203 (343)
323 PRK11524 putative methyltransf 89.1 1.5 3.3E-05 40.5 7.4 55 103-162 197-251 (284)
324 PRK08265 short chain dehydroge 89.0 3.8 8.1E-05 36.7 9.8 33 120-152 6-41 (261)
325 PTZ00075 Adenosylhomocysteinas 89.0 2.1 4.5E-05 42.7 8.6 34 118-153 252-289 (476)
326 PRK12490 6-phosphogluconate de 88.7 6.5 0.00014 36.5 11.4 35 122-156 2-38 (299)
327 PRK07502 cyclohexadienyl dehyd 88.4 2.8 6.1E-05 39.0 8.8 37 121-157 7-47 (307)
328 COG0275 Predicted S-adenosylme 88.2 3.7 8E-05 38.6 9.2 118 119-291 23-158 (314)
329 COG0686 Ald Alanine dehydrogen 87.7 2.5 5.4E-05 40.0 7.7 98 119-259 167-266 (371)
330 PLN02586 probable cinnamyl alc 87.7 2.2 4.7E-05 40.6 7.7 35 119-153 183-219 (360)
331 KOG2920|consensus 87.6 0.39 8.4E-06 44.5 2.4 55 99-154 97-152 (282)
332 PRK10458 DNA cytosine methylas 87.5 31 0.00067 34.5 15.8 42 118-159 86-128 (467)
333 PRK05476 S-adenosyl-L-homocyst 87.5 3.1 6.8E-05 41.0 8.8 36 119-154 211-248 (425)
334 KOG1596|consensus 87.4 2.1 4.6E-05 39.1 6.8 34 119-152 156-192 (317)
335 PRK12480 D-lactate dehydrogena 87.0 2.9 6.4E-05 39.6 8.1 34 119-152 145-180 (330)
336 TIGR00675 dcm DNA-methyltransf 87.0 8.4 0.00018 36.2 11.1 37 123-159 1-38 (315)
337 KOG1201|consensus 86.9 23 0.00051 33.2 13.6 54 103-156 21-77 (300)
338 PRK08339 short chain dehydroge 86.8 15 0.00032 33.0 12.3 36 120-155 8-46 (263)
339 TIGR03366 HpnZ_proposed putati 86.7 3 6.6E-05 37.9 7.8 41 119-159 120-163 (280)
340 cd08286 FDH_like_ADH2 formalde 86.7 3.6 7.9E-05 38.3 8.5 34 223-262 234-267 (345)
341 TIGR00692 tdh L-threonine 3-de 86.7 5.7 0.00012 37.0 9.8 40 119-158 161-203 (340)
342 PF04989 CmcI: Cephalosporin h 86.6 9 0.0002 34.0 10.4 136 120-295 33-186 (206)
343 KOG0023|consensus 86.6 1.3 2.8E-05 42.0 5.2 34 119-152 181-216 (360)
344 PLN02712 arogenate dehydrogena 86.5 4.5 9.8E-05 42.2 9.7 35 118-152 50-86 (667)
345 KOG2671|consensus 86.3 0.72 1.6E-05 44.0 3.4 39 118-156 207-245 (421)
346 cd08274 MDR9 Medium chain dehy 86.3 6 0.00013 36.7 9.8 33 119-151 177-212 (350)
347 PRK05786 fabG 3-ketoacyl-(acyl 86.3 9.8 0.00021 33.1 10.6 34 120-154 5-42 (238)
348 COG0604 Qor NADPH:quinone redu 86.2 3.4 7.4E-05 39.0 8.1 95 119-262 142-242 (326)
349 PRK07576 short chain dehydroge 86.2 7 0.00015 35.1 9.8 35 120-154 9-46 (264)
350 PLN02712 arogenate dehydrogena 86.1 47 0.001 34.7 17.1 34 119-152 368-403 (667)
351 PRK12939 short chain dehydroge 85.9 6.6 0.00014 34.3 9.4 35 120-155 7-45 (250)
352 cd08236 sugar_DH NAD(P)-depend 85.8 2.9 6.3E-05 38.8 7.4 39 119-157 159-200 (343)
353 PRK12921 2-dehydropantoate 2-r 85.7 7.9 0.00017 35.5 10.1 33 122-155 2-36 (305)
354 PRK08507 prephenate dehydrogen 85.5 4.7 0.0001 36.9 8.4 35 122-156 2-40 (275)
355 cd08296 CAD_like Cinnamyl alco 85.5 3.6 7.8E-05 38.2 7.8 40 119-158 163-204 (333)
356 cd08263 Zn_ADH10 Alcohol dehyd 85.3 6.6 0.00014 37.0 9.6 39 119-157 187-228 (367)
357 PF02636 Methyltransf_28: Puta 85.3 1.4 2.9E-05 40.0 4.7 56 102-162 5-71 (252)
358 KOG2793|consensus 85.3 6.2 0.00013 36.1 8.9 37 119-155 86-123 (248)
359 cd08233 butanediol_DH_like (2R 85.1 3.7 7.9E-05 38.4 7.7 40 119-158 172-214 (351)
360 PRK10309 galactitol-1-phosphat 85.0 3.9 8.4E-05 38.2 7.9 40 119-158 160-202 (347)
361 PF02826 2-Hacid_dh_C: D-isome 84.7 2 4.2E-05 36.8 5.2 36 118-155 34-73 (178)
362 PRK06182 short chain dehydroge 84.5 8.3 0.00018 34.6 9.5 34 120-153 3-39 (273)
363 TIGR01505 tartro_sem_red 2-hyd 84.4 7.8 0.00017 35.6 9.5 35 122-156 1-37 (291)
364 PLN02253 xanthoxin dehydrogena 84.3 17 0.00037 32.7 11.5 35 120-154 18-55 (280)
365 cd05289 MDR_like_2 alcohol deh 84.3 6.8 0.00015 35.0 8.8 36 119-155 144-182 (309)
366 cd08239 THR_DH_like L-threonin 84.2 3.1 6.7E-05 38.7 6.7 40 119-158 163-205 (339)
367 PRK15461 NADH-dependent gamma- 84.2 4.7 0.0001 37.4 7.9 34 122-155 3-38 (296)
368 TIGR01202 bchC 2-desacetyl-2-h 84.0 4.3 9.3E-05 37.6 7.6 37 120-156 145-184 (308)
369 COG1565 Uncharacterized conser 84.0 5.3 0.00012 38.4 8.2 43 119-161 77-129 (370)
370 PF02005 TRM: N2,N2-dimethylgu 84.0 6.2 0.00013 38.3 8.8 98 120-258 50-151 (377)
371 cd08270 MDR4 Medium chain dehy 83.6 9.2 0.0002 34.6 9.5 39 120-158 133-174 (305)
372 PRK08229 2-dehydropantoate 2-r 83.5 7.7 0.00017 36.4 9.2 32 121-152 3-36 (341)
373 PF05971 Methyltransf_10: Prot 83.5 4.7 0.0001 37.9 7.4 44 120-163 103-148 (299)
374 TIGR01470 cysG_Nterm siroheme 83.4 6.3 0.00014 34.8 7.9 32 119-150 8-41 (205)
375 PRK07806 short chain dehydroge 83.2 13 0.00027 32.7 10.0 31 120-150 6-39 (248)
376 cd05283 CAD1 Cinnamyl alcohol 83.1 7.8 0.00017 36.0 9.0 40 119-158 169-210 (337)
377 PTZ00354 alcohol dehydrogenase 83.1 6.7 0.00014 35.9 8.4 39 119-157 140-181 (334)
378 COG0287 TyrA Prephenate dehydr 83.0 6.8 0.00015 36.4 8.4 40 120-159 3-46 (279)
379 PF02558 ApbA: Ketopantoate re 83.0 11 0.00024 30.7 8.9 36 221-259 64-99 (151)
380 PF02086 MethyltransfD12: D12 82.9 2.2 4.9E-05 38.2 5.0 56 103-162 8-63 (260)
381 PLN02256 arogenate dehydrogena 82.8 7.3 0.00016 36.5 8.6 33 119-151 35-69 (304)
382 PRK05867 short chain dehydroge 82.7 28 0.0006 30.7 12.0 35 120-154 9-46 (253)
383 PRK08594 enoyl-(acyl carrier p 82.6 14 0.00031 33.0 10.2 31 120-150 7-42 (257)
384 PRK09242 tropinone reductase; 82.5 27 0.00059 30.8 12.0 37 119-155 8-47 (257)
385 PF02254 TrkA_N: TrkA-N domain 82.5 13 0.00027 28.8 8.7 31 128-158 4-38 (116)
386 cd08243 quinone_oxidoreductase 82.4 8.3 0.00018 34.8 8.7 38 119-156 142-182 (320)
387 PTZ00142 6-phosphogluconate de 82.2 17 0.00037 36.3 11.3 36 122-157 3-40 (470)
388 cd08242 MDR_like Medium chain 82.2 9.6 0.00021 34.9 9.1 41 119-159 155-197 (319)
389 PRK06249 2-dehydropantoate 2-r 81.8 10 0.00022 35.3 9.2 33 119-151 4-38 (313)
390 PLN02514 cinnamyl-alcohol dehy 81.4 8.2 0.00018 36.5 8.5 37 119-155 180-218 (357)
391 cd08231 MDR_TM0436_like Hypoth 81.3 13 0.00028 34.9 9.8 39 119-157 177-218 (361)
392 PRK08267 short chain dehydroge 81.3 24 0.00052 31.2 11.2 34 122-155 3-39 (260)
393 PRK07677 short chain dehydroge 81.1 31 0.00067 30.4 11.8 35 121-155 2-39 (252)
394 PRK06079 enoyl-(acyl carrier p 80.9 17 0.00037 32.3 10.0 32 120-151 7-43 (252)
395 PRK06522 2-dehydropantoate 2-r 80.7 12 0.00027 34.1 9.3 34 122-155 2-37 (304)
396 TIGR02354 thiF_fam2 thiamine b 80.5 3.9 8.5E-05 35.9 5.5 31 120-150 21-54 (200)
397 PF01210 NAD_Gly3P_dh_N: NAD-d 80.3 12 0.00025 31.3 8.2 100 122-260 1-102 (157)
398 PF06962 rRNA_methylase: Putat 80.2 17 0.00036 30.4 8.8 21 143-163 1-21 (140)
399 PRK08277 D-mannonate oxidoredu 80.2 38 0.00083 30.3 12.2 37 119-155 9-48 (278)
400 cd01080 NAD_bind_m-THF_DH_Cycl 79.9 5.8 0.00012 34.0 6.2 46 103-152 31-79 (168)
401 PRK09422 ethanol-active dehydr 79.6 12 0.00026 34.5 8.9 41 118-158 161-204 (338)
402 PRK06181 short chain dehydroge 79.4 12 0.00026 33.2 8.5 33 121-153 2-37 (263)
403 PRK05708 2-dehydropantoate 2-r 79.4 20 0.00044 33.3 10.3 36 121-156 3-40 (305)
404 cd08235 iditol_2_DH_like L-idi 79.4 9.4 0.0002 35.3 8.1 39 119-157 165-206 (343)
405 cd08279 Zn_ADH_class_III Class 79.3 8.7 0.00019 36.2 7.9 39 119-157 182-223 (363)
406 cd08278 benzyl_alcohol_DH Benz 79.3 7.6 0.00017 36.7 7.6 41 119-159 186-229 (365)
407 PLN02178 cinnamyl-alcohol dehy 79.1 9.1 0.0002 36.7 8.1 35 119-153 178-214 (375)
408 cd08267 MDR1 Medium chain dehy 79.1 13 0.00028 33.6 8.7 32 119-150 143-177 (319)
409 PRK06194 hypothetical protein; 79.0 44 0.00095 30.0 12.2 36 120-155 6-44 (287)
410 PRK06180 short chain dehydroge 78.8 33 0.00071 30.8 11.3 35 120-154 4-41 (277)
411 PRK12823 benD 1,6-dihydroxycyc 78.6 36 0.00078 30.0 11.3 33 120-152 8-43 (260)
412 PRK09072 short chain dehydroge 78.5 47 0.001 29.4 12.3 35 120-154 5-42 (263)
413 PLN03209 translocon at the inn 78.5 13 0.00028 38.1 9.2 36 119-154 79-117 (576)
414 cd08260 Zn_ADH6 Alcohol dehydr 78.4 9.5 0.00021 35.4 7.8 39 119-157 165-205 (345)
415 KOG0024|consensus 78.3 6.5 0.00014 37.4 6.4 42 118-159 168-212 (354)
416 PRK07523 gluconate 5-dehydroge 78.2 46 0.001 29.3 11.9 36 119-155 9-48 (255)
417 PRK06139 short chain dehydroge 78.1 39 0.00084 31.8 11.9 36 120-155 7-45 (330)
418 PRK15469 ghrA bifunctional gly 78.1 7.5 0.00016 36.6 7.0 33 119-151 135-169 (312)
419 PRK08306 dipicolinate synthase 78.0 13 0.00029 34.6 8.6 35 119-153 151-187 (296)
420 PRK08862 short chain dehydroge 77.7 49 0.0011 29.1 12.4 37 120-156 5-44 (227)
421 PRK12748 3-ketoacyl-(acyl-carr 77.7 43 0.00093 29.5 11.6 31 120-150 5-40 (256)
422 cd05281 TDH Threonine dehydrog 77.6 13 0.00029 34.5 8.6 38 119-156 163-203 (341)
423 PRK07109 short chain dehydroge 77.6 41 0.00089 31.5 11.9 36 120-155 8-46 (334)
424 PRK05855 short chain dehydroge 77.4 32 0.00069 34.2 11.7 37 119-155 314-353 (582)
425 cd08240 6_hydroxyhexanoate_dh_ 77.3 20 0.00043 33.4 9.6 39 119-157 175-216 (350)
426 PRK13771 putative alcohol dehy 77.2 10 0.00023 34.9 7.7 40 119-158 162-204 (334)
427 PRK10083 putative oxidoreducta 77.2 11 0.00025 34.7 8.0 40 119-158 160-203 (339)
428 cd08241 QOR1 Quinone oxidoredu 76.8 17 0.00037 32.5 8.9 39 119-157 139-180 (323)
429 cd05286 QOR2 Quinone oxidoredu 76.8 13 0.00029 33.1 8.1 39 119-157 136-177 (320)
430 PRK06701 short chain dehydroge 76.7 31 0.00066 31.5 10.6 32 120-151 46-80 (290)
431 COG1867 TRM1 N2,N2-dimethylgua 76.7 12 0.00025 36.3 7.8 94 120-258 53-151 (380)
432 PRK05396 tdh L-threonine 3-deh 76.7 12 0.00027 34.7 8.0 40 119-158 163-205 (341)
433 PRK06500 short chain dehydroge 76.7 48 0.001 28.8 11.5 34 120-153 6-42 (249)
434 PRK08655 prephenate dehydrogen 76.6 16 0.00036 36.0 9.2 33 122-154 2-37 (437)
435 PRK05717 oxidoreductase; Valid 76.4 45 0.00098 29.4 11.4 34 119-152 9-45 (255)
436 PRK06138 short chain dehydroge 76.4 51 0.0011 28.7 12.3 37 119-155 4-43 (252)
437 PRK06914 short chain dehydroge 76.3 40 0.00087 30.1 11.1 35 120-154 3-40 (280)
438 TIGR00873 gnd 6-phosphoglucona 76.1 29 0.00062 34.7 10.8 34 123-156 2-37 (467)
439 PRK07326 short chain dehydroge 75.8 52 0.0011 28.4 11.9 32 120-152 6-41 (237)
440 cd08266 Zn_ADH_like1 Alcohol d 75.8 15 0.00032 33.4 8.2 38 119-156 166-206 (342)
441 PRK07574 formate dehydrogenase 75.7 7.3 0.00016 37.9 6.3 33 119-151 191-225 (385)
442 COG0407 HemE Uroporphyrinogen- 75.7 36 0.00078 32.8 10.9 97 31-159 184-280 (352)
443 cd08289 MDR_yhfp_like Yhfp put 75.6 17 0.00037 33.1 8.6 38 120-157 147-187 (326)
444 PRK12429 3-hydroxybutyrate deh 75.5 32 0.00069 30.1 10.1 35 120-155 4-42 (258)
445 PRK07825 short chain dehydroge 75.5 52 0.0011 29.3 11.6 35 120-154 5-42 (273)
446 cd08298 CAD2 Cinnamyl alcohol 75.1 26 0.00057 32.1 9.8 39 119-157 167-207 (329)
447 PRK06200 2,3-dihydroxy-2,3-dih 74.9 49 0.0011 29.3 11.2 36 120-155 6-44 (263)
448 PF02153 PDH: Prephenate dehyd 74.8 14 0.00031 33.5 7.7 27 133-159 1-29 (258)
449 PRK07890 short chain dehydroge 74.6 59 0.0013 28.5 12.5 36 120-155 5-43 (258)
450 PRK06125 short chain dehydroge 74.6 60 0.0013 28.6 12.3 37 120-156 7-46 (259)
451 PF02737 3HCDH_N: 3-hydroxyacy 74.5 7.5 0.00016 33.4 5.5 41 122-162 1-43 (180)
452 PLN02350 phosphogluconate dehy 74.2 49 0.0011 33.3 11.9 36 120-155 6-43 (493)
453 PRK07231 fabG 3-ketoacyl-(acyl 74.1 58 0.0013 28.2 12.2 34 120-153 5-41 (251)
454 cd08269 Zn_ADH9 Alcohol dehydr 74.1 26 0.00056 31.6 9.3 37 119-155 129-168 (312)
455 PRK12742 oxidoreductase; Provi 74.1 57 0.0012 28.1 11.4 30 120-149 6-38 (237)
456 cd05288 PGDH Prostaglandin deh 74.0 14 0.00029 33.9 7.5 39 119-157 145-186 (329)
457 COG1233 Phytoene dehydrogenase 73.9 3.9 8.5E-05 40.8 4.1 30 120-149 3-34 (487)
458 PF11599 AviRa: RRNA methyltra 73.9 11 0.00023 34.1 6.2 44 119-162 51-98 (246)
459 PLN03139 formate dehydrogenase 73.8 12 0.00025 36.5 7.2 31 119-151 198-232 (386)
460 PRK08324 short chain dehydroge 73.6 30 0.00065 36.0 10.7 37 119-155 421-460 (681)
461 PRK08226 short chain dehydroge 73.6 64 0.0014 28.4 12.6 33 120-153 6-42 (263)
462 PRK08703 short chain dehydroge 73.3 61 0.0013 28.1 12.3 35 120-155 6-44 (239)
463 PRK08644 thiamine biosynthesis 73.2 24 0.00052 31.2 8.6 31 120-150 28-61 (212)
464 PRK07102 short chain dehydroge 72.8 64 0.0014 28.1 12.1 32 121-153 2-37 (243)
465 cd08250 Mgc45594_like Mgc45594 72.8 20 0.00044 32.7 8.4 39 119-157 139-180 (329)
466 COG3129 Predicted SAM-dependen 72.7 15 0.00032 33.5 6.9 45 118-162 77-123 (292)
467 KOG2539|consensus 72.7 7.8 0.00017 38.5 5.7 63 98-161 180-246 (491)
468 PRK05866 short chain dehydroge 72.6 33 0.00071 31.4 9.7 36 120-155 40-78 (293)
469 PLN02702 L-idonate 5-dehydroge 72.3 16 0.00034 34.4 7.7 40 119-158 181-223 (364)
470 PF11899 DUF3419: Protein of u 72.1 5.1 0.00011 38.9 4.3 53 206-258 275-331 (380)
471 PRK12827 short chain dehydroge 72.1 65 0.0014 27.9 12.0 30 120-149 6-38 (249)
472 cd05291 HicDH_like L-2-hydroxy 72.0 38 0.00083 31.5 10.1 34 122-155 2-39 (306)
473 PRK13394 3-hydroxybutyrate deh 72.0 37 0.0008 29.8 9.6 37 120-156 7-46 (262)
474 PRK12475 thiamine/molybdopteri 71.9 5 0.00011 38.2 4.1 32 120-151 24-58 (338)
475 cd08265 Zn_ADH3 Alcohol dehydr 71.7 19 0.00041 34.3 8.1 35 223-262 274-308 (384)
476 PRK07819 3-hydroxybutyryl-CoA 71.5 8.6 0.00019 35.6 5.5 41 121-161 6-48 (286)
477 PRK06035 3-hydroxyacyl-CoA deh 71.3 8.6 0.00019 35.4 5.5 39 121-159 4-44 (291)
478 PF01494 FAD_binding_3: FAD bi 71.3 4.1 8.9E-05 37.4 3.3 31 121-151 2-34 (356)
479 PRK06436 glycerate dehydrogena 71.3 8.5 0.00018 36.1 5.5 32 119-150 121-154 (303)
480 cd08297 CAD3 Cinnamyl alcohol 71.3 20 0.00044 33.1 8.1 39 119-157 165-206 (341)
481 PLN02688 pyrroline-5-carboxyla 71.2 30 0.00066 31.1 9.0 33 122-154 2-41 (266)
482 PRK12829 short chain dehydroge 71.1 72 0.0016 28.0 12.2 35 120-155 11-49 (264)
483 TIGR02823 oxido_YhdH putative 71.0 24 0.00051 32.2 8.4 37 119-155 144-184 (323)
484 PRK02318 mannitol-1-phosphate 70.9 7.5 0.00016 37.5 5.1 38 121-158 1-41 (381)
485 PRK00094 gpsA NAD(P)H-dependen 70.8 31 0.00066 31.9 9.1 36 122-157 3-40 (325)
486 KOG1209|consensus 70.7 5.5 0.00012 35.9 3.8 34 119-152 6-43 (289)
487 TIGR01692 HIBADH 3-hydroxyisob 70.4 36 0.00077 31.3 9.4 23 133-155 11-33 (288)
488 PRK11730 fadB multifunctional 70.4 8.4 0.00018 40.5 5.7 40 121-160 314-355 (715)
489 PRK12409 D-amino acid dehydrog 70.4 4.2 9.1E-05 39.1 3.3 29 122-150 3-33 (410)
490 PLN02985 squalene monooxygenas 70.2 6 0.00013 39.8 4.5 67 79-150 7-75 (514)
491 PRK08213 gluconate 5-dehydroge 70.2 76 0.0017 27.9 12.5 35 120-155 12-50 (259)
492 TIGR03206 benzo_BadH 2-hydroxy 70.1 43 0.00093 29.1 9.6 34 120-154 3-40 (250)
493 cd05279 Zn_ADH1 Liver alcohol 70.0 18 0.00038 34.2 7.5 40 119-158 183-225 (365)
494 PRK07688 thiamine/molybdopteri 69.8 6 0.00013 37.7 4.2 32 120-151 24-58 (339)
495 TIGR02824 quinone_pig3 putativ 69.5 28 0.00061 31.2 8.4 39 119-157 139-180 (325)
496 PRK10754 quinone oxidoreductas 69.5 28 0.0006 31.9 8.5 39 119-157 140-181 (327)
497 cd05276 p53_inducible_oxidored 69.4 27 0.00059 31.1 8.3 39 119-157 139-180 (323)
498 cd08259 Zn_ADH5 Alcohol dehydr 69.3 22 0.00048 32.3 7.8 37 119-155 162-201 (332)
499 PRK06924 short chain dehydroge 69.3 77 0.0017 27.6 11.0 29 122-151 3-35 (251)
500 PRK08589 short chain dehydroge 68.8 87 0.0019 28.0 12.2 31 120-150 6-39 (272)
No 1
>KOG2798|consensus
Probab=100.00 E-value=2.8e-79 Score=554.68 Aligned_cols=294 Identities=44% Similarity=0.786 Sum_probs=271.2
Q ss_pred hhhhHHHHHhcCcHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcchHHHHHHH
Q psy3185 2 KVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNSTDLEKVQTTL 81 (298)
Q Consensus 2 ~~~r~~~~~~~l~~~~~~ll~~y~~~l~~~~~~i~~N~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l 81 (298)
++.|+++....+|.+||++|.+|.++|+.++.||++|+.++++|++.+...|... +... .....+++-+|.||.++|
T Consensus 36 ~l~~~~~~~n~~s~d~q~~l~~f~k~l~n~k~~I~~N~~v~r~Ia~~~~~~f~ed-~~~~--~~~~~~n~~~m~kv~s~l 112 (369)
T KOG2798|consen 36 LLFRRRRQLNGISEDHQQLLGNFTKHLKNNKGCIEENSRVIRAIAEECPFEFTED-HDQK--GELAQVNPDFMSKVSSTL 112 (369)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHhhCccccchh-hhcc--cceecCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999766666542 1111 124556667899999999
Q ss_pred HHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHH
Q psy3185 82 KQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 82 ~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l 161 (298)
+|++||||+||..||+++|.||+++|..++|+....+.+.+||+||||+||||++||..||.|+|+|+|++|+.++.|+|
T Consensus 113 ~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiL 192 (369)
T KOG2798|consen 113 KQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFIL 192 (369)
T ss_pred HHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccccccccccccccccccccccCCCCCC-CCCCCCCeeEEeccccccccCC---CceeEEEecccccCc
Q psy3185 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS-DYNDDCDFSMAAGDFLQVYVHP---NKWDCVATCFFIDCA 237 (298)
Q Consensus 162 ~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~-~~~~~~~~~~~~gDf~~~~~~~---~~fD~V~t~ffidta 237 (298)
|.++..++++||||||++||+++.+||+||+++||+.|. ..+..+.++|++|||+++|... +.||+|+||||||||
T Consensus 193 N~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa 272 (369)
T KOG2798|consen 193 NYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA 272 (369)
T ss_pred HhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech
Confidence 999999999999999999999999999999999999997 4555688999999999999754 489999999999999
Q ss_pred chHHHHHHHHHHhccCCeEEEEeccccccccCCCC---CCccCCCHHHHHHHHHhCCCEEEEeC
Q psy3185 238 NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLN---EDSIEPSYEVVKQVIQGLGFVYEVES 298 (298)
Q Consensus 238 ~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~---~~~~~ls~eEl~~~~~~~GF~i~~~~ 298 (298)
+|+.+||++|+++|||||+|||+|||+|||++..+ +++++||.|+|..+++..||++++++
T Consensus 273 ~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 273 HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 99999999999999999999999999999998654 78999999999999999999999874
No 2
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=100.00 E-value=1.1e-73 Score=520.10 Aligned_cols=231 Identities=53% Similarity=0.945 Sum_probs=218.2
Q ss_pred CCCCcchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEe
Q psy3185 68 LPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGN 147 (298)
Q Consensus 68 ~~~~~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~ 147 (298)
.++..|++||+++|+|++||||++|+.||+++|+||++.|.+++|....++++.+||+||||+||||+|||++||.|+||
T Consensus 5 ~~~~~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gn 84 (270)
T PF07942_consen 5 HPSPSDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGN 84 (270)
T ss_pred cCchhhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEE
Confidence 45568999999999999999999999999999999999999999965556778999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC-CCCCCCeeEEeccccccccCC---C
Q psy3185 148 EFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD-YNDDCDFSMAAGDFLQVYVHP---N 223 (298)
Q Consensus 148 D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~-~~~~~~~~~~~gDf~~~~~~~---~ 223 (298)
|+|+.|+.+++|+||.+.+.++++||||+|++||+.++++|+|+++|||+.|.. ++...+++|++|||+++|.++ +
T Consensus 85 E~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~ 164 (270)
T PF07942_consen 85 EFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKG 164 (270)
T ss_pred EchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCC
Confidence 999999999999999999999999999999999999999999999999999875 455689999999999999876 8
Q ss_pred ceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCC--CCCCccCCCHHHHHHHHHhCCCEEEEeC
Q psy3185 224 KWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNM--LNEDSIEPSYEVVKQVIQGLGFVYEVES 298 (298)
Q Consensus 224 ~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~--~~~~~~~ls~eEl~~~~~~~GF~i~~~~ 298 (298)
+||+|+||||||||+|+.+||++|+++|||||+|||+|||+||+++. +++.+++||+|||++++++.||++++++
T Consensus 165 ~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 165 SFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred cccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999976 5667899999999999999999999864
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.84 E-value=9.9e-20 Score=163.74 Aligned_cols=176 Identities=22% Similarity=0.271 Sum_probs=131.0
Q ss_pred chHHHHHHHHHHHhhhccCC-----hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEE
Q psy3185 73 DLEKVQTTLKQFVRDWSEEG-----SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQ 145 (298)
Q Consensus 73 ~~~~v~~~l~~~~RdWs~~g-----~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~ 145 (298)
....|.+.+..++.-++.-. ...|. +-+.+.+.... .++.+|||+|||||.+|..+++.. .+|+
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~-----Wr~~~i~~~~~----~~g~~vLDva~GTGd~a~~~~k~~g~g~v~ 79 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRL-----WRRALISLLGI----KPGDKVLDVACGTGDMALLLAKSVGTGEVV 79 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhcccccCcchHH-----HHHHHHHhhCC----CCCCEEEEecCCccHHHHHHHHhcCCceEE
Confidence 34677777777777666422 22332 45555555432 257899999999999999999985 6899
Q ss_pred EeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCce
Q psy3185 146 GNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKW 225 (298)
Q Consensus 146 g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~f 225 (298)
|+|+|..||..++..+. + .. ..+++++.||+.++++++++|
T Consensus 80 ~~D~s~~ML~~a~~k~~---~------------------------------~~------~~~i~fv~~dAe~LPf~D~sF 120 (238)
T COG2226 80 GLDISESMLEVAREKLK---K------------------------------KG------VQNVEFVVGDAENLPFPDNSF 120 (238)
T ss_pred EEECCHHHHHHHHHHhh---c------------------------------cC------ccceEEEEechhhCCCCCCcc
Confidence 99999999999987322 1 01 124899999999999999999
Q ss_pred eEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-------ccc--ccc---cc-CCC--------C-------CCc--
Q psy3185 226 DCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-------GPL--LYH---YS-NML--------N-------EDS-- 275 (298)
Q Consensus 226 D~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-------gPl--~y~---~~-~~~--------~-------~~~-- 275 (298)
|+|..+|-|....++..+|++++|+|||||.++.+ +++ .|+ +. -.| + ..+
T Consensus 121 D~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~ 200 (238)
T COG2226 121 DAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIR 200 (238)
T ss_pred CEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHH
Confidence 99999999999999999999999999999988753 111 011 11 000 0 112
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
-.++.+++.+++++.||+.+.
T Consensus 201 ~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 201 RFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred hCCCHHHHHHHHHhcCceEEe
Confidence 237899999999999999764
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.81 E-value=9.9e-20 Score=164.06 Aligned_cols=139 Identities=27% Similarity=0.343 Sum_probs=79.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||||.++..++++ | ..|+|+|+|+.||..++..+...
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------------------------------- 95 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------------------------------- 95 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-------------------------------
Confidence 4679999999999999999986 3 57999999999999998743320
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec---c---c---cc-
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG---P---L---LY- 265 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g---P---l---~y- 265 (298)
...++.++.||+.+++.++++||+|+++|.|.+.+|+...+++++|+|||||.++.+. | + .|
T Consensus 96 --------~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~ 167 (233)
T PF01209_consen 96 --------GLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYK 167 (233)
T ss_dssp --------T--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHH
T ss_pred --------CCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceee
Confidence 0137899999999999989999999999999999999999999999999999987431 1 1 11
Q ss_pred --cccCCC--------C-------CCcc--CCCHHHHHHHHHhCCCEEEE
Q psy3185 266 --HYSNML--------N-------EDSI--EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 266 --~~~~~~--------~-------~~~~--~ls~eEl~~~~~~~GF~i~~ 296 (298)
-..-.| + ..++ ..+.+|+.++++++||+.++
T Consensus 168 ~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~ 217 (233)
T PF01209_consen 168 FYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVE 217 (233)
T ss_dssp H-------------------------------------------------
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000 0 1233 26789999999999998653
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.80 E-value=2.4e-18 Score=157.49 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=107.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|+++..++++ | ..|+|+|+|+.|+..++...+....
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~----------------------------- 123 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK----------------------------- 123 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-----------------------------
Confidence 4679999999999999999986 4 4799999999999988753211000
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec--c-------cccc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG--P-------LLYH 266 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g--P-------l~y~ 266 (298)
....++.+..+|+.+++.++++||+|++.+.+++.+++..++++++++|||||.++... + .++.
T Consensus 124 -------~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~ 196 (261)
T PLN02233 124 -------SCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQE 196 (261)
T ss_pred -------ccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHH
Confidence 00136889999999988788999999999999999999999999999999999986431 1 0100
Q ss_pred c--cC----C----CCC---------CccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 Y--SN----M----LNE---------DSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 ~--~~----~----~~~---------~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+ .. . ... ....+|.+|+.++++++||+.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~ 245 (261)
T PLN02233 197 WMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAK 245 (261)
T ss_pred HHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEE
Confidence 0 00 0 000 02247999999999999999764
No 6
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.80 E-value=5.9e-19 Score=147.56 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=100.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.|++|+|+|+|+.|+.. . ..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-~----~~---------------------------------- 62 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-R----NV---------------------------------- 62 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-T----TS----------------------------------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-h----hh----------------------------------
Confidence 57899999999999999999999999999999999876 0 00
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccc----------ccc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLY----------HYS 268 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y----------~~~ 268 (298)
..... +.......+++||+|+++..|++.+|+..+|+.|+++|||||+++...|..+ .+.
T Consensus 63 --------~~~~~--~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 132 (161)
T PF13489_consen 63 --------VFDNF--DAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYD 132 (161)
T ss_dssp --------EEEEE--ECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGT
T ss_pred --------hhhhh--hhhhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCc
Confidence 00000 0012223568999999999999999999999999999999999987666532 221
Q ss_pred CCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 269 NMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 269 ~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
...+.....++.+++..+++++||++++|
T Consensus 133 ~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 133 RPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp CHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred CccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 11113345689999999999999999975
No 7
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=1.8e-18 Score=151.95 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=100.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..||++|++|+|+|+|+.|+..++......
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~---------------------------------- 75 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE---------------------------------- 75 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc----------------------------------
Confidence 3579999999999999999999999999999999999888643210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCcc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSI 276 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~ 276 (298)
.+ .++.+..+|+.++.. +++||+|++.++++.. .+...+++.++++|||||+++.+..+.......+..+..
T Consensus 76 --~~---~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 149 (197)
T PRK11207 76 --NL---DNLHTAVVDLNNLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPF 149 (197)
T ss_pred --CC---CcceEEecChhhCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCC
Confidence 00 135566777766543 4679999988766533 467899999999999999965432211110011123557
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q psy3185 277 EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 277 ~ls~eEl~~~~~~~GF~i~~ 296 (298)
.++.+|+.+.++ ||+++.
T Consensus 150 ~~~~~el~~~~~--~~~~~~ 167 (197)
T PRK11207 150 AFKEGELRRYYE--GWEMVK 167 (197)
T ss_pred ccCHHHHHHHhC--CCeEEE
Confidence 789999999996 999875
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.79 E-value=6.3e-18 Score=153.18 Aligned_cols=171 Identities=14% Similarity=0.221 Sum_probs=127.8
Q ss_pred chHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHH
Q psy3185 73 DLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 73 ~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~ 152 (298)
|..+|...+...+..|......+| .+.+.|.+.++. .+..+|||+|||+|.++..+++.|..|+|+|+|+.
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~~q~-----~~a~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~ 75 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAELQR-----QSADALLAMLPQ----RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPP 75 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHHHHH-----HHHHHHHHhcCc----cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHH
Confidence 456788888888888876444444 366777777663 24578999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc
Q psy3185 153 MLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF 232 (298)
Q Consensus 153 Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f 232 (298)
|+..++... ....++.+|+.+++..+++||+|++.+
T Consensus 76 ~l~~a~~~~--------------------------------------------~~~~~~~~d~~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 76 MLAQARQKD--------------------------------------------AADHYLAGDIESLPLATATFDLAWSNL 111 (251)
T ss_pred HHHHHHhhC--------------------------------------------CCCCEEEcCcccCcCCCCcEEEEEECc
Confidence 999876510 012356778877766678999999999
Q ss_pred cccCcchHHHHHHHHHHhccCCeEEEEecccc---------ccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 233 FIDCANNIVSFIETIFNILKPGGIWINLGPLL---------YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 233 fidta~n~~~yl~~I~~~LkpGG~~In~gPl~---------y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+++..++...+.+++++|||||.++...+.. |...+......-.++.+++..++...||+...
T Consensus 112 ~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 112 AVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred hhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 99999999999999999999999998543221 10001011122347899999999988887643
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.79 E-value=9.1e-18 Score=157.88 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=127.2
Q ss_pred HHHHHHHHhhhc-cCChHHH-----hhhhHHHHHHHHhhCCCCC---CCCCCCeEEEecccCcHHHHHHHHcCCeEEEee
Q psy3185 78 QTTLKQFVRDWS-EEGSEER-----KTCYEPIISEILARFPPET---INPKDVNILVPGAGLGRLAFEIARRGYVCQGNE 148 (298)
Q Consensus 78 ~~~l~~~~RdWs-~~g~~ER-----~~~~~~i~~~l~~~~p~~~---~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D 148 (298)
...+.+++.+|- .+|.-.. ......|.+.+.++++... ...++.+|||+|||+|.++..||+.|++|+|+|
T Consensus 81 ~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID 160 (322)
T PLN02396 81 LAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGATVTGVD 160 (322)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEe
Confidence 346677777874 4453111 0012234455555554211 112456999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEE
Q psy3185 149 FSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCV 228 (298)
Q Consensus 149 ~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V 228 (298)
.|+.|+..++..... . +...++.+..+|+.++...+++||+|
T Consensus 161 ~s~~~i~~Ar~~~~~----------------------------------~----~~~~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 161 AVDKNVKIARLHADM----------------------------------D----PVTSTIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCHHHHHHHHHHHHh----------------------------------c----CcccceeEEecCHHHhhhccCCCCEE
Confidence 999999988752110 0 00136788999998887667899999
Q ss_pred EecccccCcchHHHHHHHHHHhccCCeEEEEeccc----cc---------cccCCCC-C--CccCCCHHHHHHHHHhCCC
Q psy3185 229 ATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL----LY---------HYSNMLN-E--DSIEPSYEVVKQVIQGLGF 292 (298)
Q Consensus 229 ~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl----~y---------~~~~~~~-~--~~~~ls~eEl~~~~~~~GF 292 (298)
++...|++..+...+++++.++|||||.++...+- .| .....+. . ..-.++.+|+.+++++.||
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999843221 11 1100111 1 1224799999999999999
Q ss_pred EEEEe
Q psy3185 293 VYEVE 297 (298)
Q Consensus 293 ~i~~~ 297 (298)
+++..
T Consensus 283 ~i~~~ 287 (322)
T PLN02396 283 DVKEM 287 (322)
T ss_pred eEEEE
Confidence 99753
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.78 E-value=9.2e-18 Score=152.78 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=108.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..++++|.+|+|+|+|+.|+..|+..... .
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~---~------------------------------- 89 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEA---K------------------------------- 89 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---c-------------------------------
Confidence 357999999999999999999999999999999999998874321 0
Q ss_pred CCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe----ccccc--------
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL----GPLLY-------- 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~----gPl~y-------- 265 (298)
....++.++.+|+.++. ..+++||+|++...+++.+++..+++++.++|||||+++.. ..+.+
T Consensus 90 ----g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~ 165 (255)
T PRK11036 90 ----GVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNF 165 (255)
T ss_pred ----CCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccCh
Confidence 00136788889987764 24689999999999998889999999999999999998632 11100
Q ss_pred cc--cCC------CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 266 HY--SNM------LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 266 ~~--~~~------~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+. ... ...+...++.+++.+++++.||+++..
T Consensus 166 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~ 205 (255)
T PRK11036 166 DYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGK 205 (255)
T ss_pred HHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeee
Confidence 00 000 012345689999999999999999753
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=4.2e-17 Score=148.37 Aligned_cols=130 Identities=17% Similarity=0.168 Sum_probs=100.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..|+++ +..|+|+|+|+.|+..++.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------------------------- 71 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------------------------- 71 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------------------------------------
Confidence 4679999999999999999998 6789999999999987753
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc----cc------
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL----YH------ 266 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~----y~------ 266 (298)
.++.+..+|+.++. .+++||+|++.+.+++.++....+++++++|||||.++...|-. ++
T Consensus 72 ---------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 141 (255)
T PRK14103 72 ---------RGVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRAL 141 (255)
T ss_pred ---------cCCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHH
Confidence 13456778887764 46799999999999999999999999999999999997432210 00
Q ss_pred -----ccCC-CC----CCccCCCHHHHHHHHHhCCCEEE
Q psy3185 267 -----YSNM-LN----EDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 267 -----~~~~-~~----~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+... .. ......+.+++.++++++||++.
T Consensus 142 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 180 (255)
T PRK14103 142 ARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVD 180 (255)
T ss_pred hccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEE
Confidence 0000 00 01234689999999999999864
No 12
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.74 E-value=1.9e-17 Score=126.07 Aligned_cols=93 Identities=28% Similarity=0.383 Sum_probs=79.4
Q ss_pred EEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCC
Q psy3185 124 LVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDY 202 (298)
Q Consensus 124 LdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~ 202 (298)
||+|||+|+.+..|+++ +.+|+|+|+|+.|+..++....
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---------------------------------------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---------------------------------------- 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT----------------------------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc----------------------------------------
Confidence 89999999999999999 8899999999999998887321
Q ss_pred CCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 203 NDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 203 ~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.....+..+|+.+++.++++||+|++...+++.++...++++|+|+|||||+++
T Consensus 41 --~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 41 --NEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --TSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 124558899999998889999999999998888999999999999999999986
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.73 E-value=1.1e-16 Score=140.34 Aligned_cols=131 Identities=12% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..||++|+.|+|+|+|+.|+..++..... . .
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~---~-~------------------------------ 76 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKAR---E-N------------------------------ 76 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHH---h-C------------------------------
Confidence 56999999999999999999999999999999999988763321 0 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccC-C--CCCC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSN-M--LNED 274 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~-~--~~~~ 274 (298)
.++....+|+..... +++||+|++.+.++.. .++..+++.++++|||||+++.+. |...+ . +...
T Consensus 77 ------~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~---~~~~~~~~~~~~~ 146 (195)
T TIGR00477 77 ------LPLRTDAYDINAAAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA---AMDTADYPCHMPF 146 (195)
T ss_pred ------CCceeEeccchhccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE---ecccCCCCCCCCc
Confidence 123344555544332 4689999988766543 567899999999999999854321 11110 0 1123
Q ss_pred ccCCCHHHHHHHHHhCCCEEEE
Q psy3185 275 SIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...++.+||.+++. +|+++.
T Consensus 147 ~~~~~~~el~~~f~--~~~~~~ 166 (195)
T TIGR00477 147 SFTFKEDELRQYYA--DWELLK 166 (195)
T ss_pred CccCCHHHHHHHhC--CCeEEE
Confidence 56799999999985 588765
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=1e-16 Score=143.15 Aligned_cols=180 Identities=16% Similarity=0.231 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCC
Q psy3185 74 LEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFS 150 (298)
Q Consensus 74 ~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S 150 (298)
..+|+..+..++..|..-....--..+....+.+.+.++. .++.+|||+|||+|.++..+++. +..|+|+|+|
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s 79 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV----QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS 79 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC----CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC
Confidence 3567777777777777521110000011122333333332 24679999999999999999976 3589999999
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe
Q psy3185 151 LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT 230 (298)
Q Consensus 151 ~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t 230 (298)
+.|+..++..+... . ..++.++.+|+.++..++++||+|++
T Consensus 80 ~~~~~~a~~~~~~~------------------------------------~---~~~v~~~~~d~~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 80 ENMLSVGRQKVKDA------------------------------------G---LHNVELVHGNAMELPFDDNSFDYVTI 120 (231)
T ss_pred HHHHHHHHHHHHhc------------------------------------C---CCceEEEEechhcCCCCCCCccEEEE
Confidence 99999887643210 0 13677888998887666789999999
Q ss_pred cccccCcchHHHHHHHHHHhccCCeEEEEeccc---c------cc--ccC-CC-----------------CCCccCCCHH
Q psy3185 231 CFFIDCANNIVSFIETIFNILKPGGIWINLGPL---L------YH--YSN-ML-----------------NEDSIEPSYE 281 (298)
Q Consensus 231 ~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl---~------y~--~~~-~~-----------------~~~~~~ls~e 281 (298)
.+.+++.++....++++.++|||||.++...+. . |. +.. .+ ....-.++.+
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (231)
T TIGR02752 121 GFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMD 200 (231)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999753221 0 00 000 00 0001136789
Q ss_pred HHHHHHHhCCCEEEE
Q psy3185 282 VVKQVIQGLGFVYEV 296 (298)
Q Consensus 282 El~~~~~~~GF~i~~ 296 (298)
|+.++++++||+.++
T Consensus 201 ~l~~~l~~aGf~~~~ 215 (231)
T TIGR02752 201 ELAEMFQEAGFKDVE 215 (231)
T ss_pred HHHHHHHHcCCCeeE
Confidence 999999999999764
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.73 E-value=2.6e-16 Score=149.32 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=108.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..|+++ |.+|+|+|+|+.|+..++......
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------------------------------- 164 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------------------------------- 164 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 4679999999999999999987 789999999999999887743210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCC------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML------ 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~------ 271 (298)
....++.+..+|+.+++.++++||+|++...+++.++...++++++++|||||.++......-......
T Consensus 165 -----g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~ 239 (340)
T PLN02244 165 -----GLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPD 239 (340)
T ss_pred -----CCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHH
Confidence 001368899999998877789999999999999999999999999999999999875432100000000
Q ss_pred ---------C--CCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 272 ---------N--EDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 272 ---------~--~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
. ......+.+++.++++++||+.+..
T Consensus 240 ~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~ 276 (340)
T PLN02244 240 EQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKT 276 (340)
T ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEe
Confidence 0 0011248999999999999998753
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=2.3e-16 Score=124.80 Aligned_cols=102 Identities=24% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|+++.++++ .|.+|+|+|+|+.|+..++......
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 48 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--------------------------------- 48 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc---------------------------------
Confidence 57999999999999999999 7899999999999999998743110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccCc---chHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDCA---NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidta---~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..+|+.......+.||+|++.. .++.. ++..++++.+.+.|||||+++.
T Consensus 49 -----~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 49 -----GLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp -----TTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----CCCCCeEEEECccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 112589999999922222356799998877 23322 5678899999999999999974
No 17
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.69 E-value=8e-17 Score=143.54 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=105.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+.+|||+|||-|-|+..+|+.|+.|+|+|.|+.|+..|+. ++.+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~---ha~e~------------------------------ 104 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKL---HALES------------------------------ 104 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHH---hhhhc------------------------------
Confidence 368899999999999999999999999999999999999886 32210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe----cccccccc-----
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL----GPLLYHYS----- 268 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~----gPl~y~~~----- 268 (298)
..++.+.++...++-...++||+|+|.-+|.+.+|+..+++++.+++||||+.+.. .+..|...
T Consensus 105 -------gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae 177 (243)
T COG2227 105 -------GVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAE 177 (243)
T ss_pred -------cccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHH
Confidence 12344555555555444589999999999999999999999999999999998633 33222111
Q ss_pred ----CCCC---CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 269 ----NMLN---EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 269 ----~~~~---~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|. ...--+-++|+..++...||++..
T Consensus 178 ~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 178 YVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred HHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 1111 112236789999999998998865
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=5.6e-16 Score=145.97 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=104.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..++..|.. |+|+|.|+.|+..++.+....
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~--------------------------------- 168 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL--------------------------------- 168 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc---------------------------------
Confidence 4679999999999999999999864 999999999997665432110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccccc-----------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYH----------- 266 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~----------- 266 (298)
....++.+..+|+.+++. +++||+|++...+++..++..+++.++++|||||.+|.-......
T Consensus 169 -----~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~ 242 (322)
T PRK15068 169 -----GNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDR 242 (322)
T ss_pred -----CCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhH
Confidence 001367888899988866 789999999888888899999999999999999999742211000
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+.... ......|.+++..+++++||+.++
T Consensus 243 y~~~~-~~~~lps~~~l~~~L~~aGF~~i~ 271 (322)
T PRK15068 243 YAKMR-NVYFIPSVPALKNWLERAGFKDVR 271 (322)
T ss_pred HhcCc-cceeCCCHHHHHHHHHHcCCceEE
Confidence 10000 012235899999999999999875
No 19
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.69 E-value=1e-15 Score=133.72 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=95.2
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
|....+.+.++. .++.++||+|||.||.|..||++||+|+|+|.|+..+...+.+..+ .
T Consensus 17 ~~hs~v~~a~~~----~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~-~---------------- 75 (192)
T PF03848_consen 17 PTHSEVLEAVPL----LKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE-E---------------- 75 (192)
T ss_dssp ---HHHHHHCTT----S-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH-T----------------
T ss_pred CCcHHHHHHHhh----cCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh-c----------------
Confidence 444555555543 2468999999999999999999999999999999999877664332 0
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+.++.....|+.+... ++.||+|++. .|++ .+.+...++.|...++|||+.+
T Consensus 76 -----------------------~l~i~~~~~Dl~~~~~-~~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 76 -----------------------GLDIRTRVADLNDFDF-PEEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp -----------------------T-TEEEEE-BGCCBS--TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEE
T ss_pred -----------------------CceeEEEEecchhccc-cCCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEEE
Confidence 1246677788877654 4789999863 3454 5678889999999999999976
Q ss_pred EeccccccccCCC--CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 259 NLGPLLYHYSNML--NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 259 n~gPl~y~~~~~~--~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..... ...+.+ .++..-+...||.+... ||+|++
T Consensus 131 i~~~~--~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 131 IVTFM--ETPDYPCPSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp EEEEB----SSS--SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred EEEec--ccCCCCCCCCCCcccCHHHHHHHhC--CCeEEE
Confidence 43221 111111 22345577889999874 799875
No 20
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.69 E-value=5.5e-16 Score=143.70 Aligned_cols=134 Identities=15% Similarity=0.113 Sum_probs=97.9
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|+++..||++|++|+|+|.|+.|+..++..... .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~---~-------------------------------- 165 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEK---E-------------------------------- 165 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---c--------------------------------
Confidence 45999999999999999999999999999999999988764321 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccC--cchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC--ANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt--a~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
..++.+..+|+..... +++||+|++.++++. .+++..+++.++++|||||+++.+.+..-.....+......
T Consensus 166 -----~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~ 239 (287)
T PRK12335 166 -----NLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFT 239 (287)
T ss_pred -----CCceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcc
Confidence 0145566667665433 678999998876653 34788999999999999999664433221111111123456
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
++.+||++++. +|++++
T Consensus 240 ~~~~el~~~~~--~~~i~~ 256 (287)
T PRK12335 240 FKEGELKDYYQ--DWEIVK 256 (287)
T ss_pred cCHHHHHHHhC--CCEEEE
Confidence 89999999985 488875
No 21
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.68 E-value=1.3e-15 Score=139.63 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=102.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|..+..|++. |.+|+|+|+|+.|+..++....
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~----------------------------------- 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS----------------------------------- 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC-----------------------------------
Confidence 4679999999999999999875 7899999999999998876211
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCC-----
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNM----- 270 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~----- 270 (298)
...++.+..+|+.+.+.++++||+|++...+.+. .+...++++++++|||||.++...+..-.....
T Consensus 97 ------~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~ 170 (263)
T PTZ00098 97 ------DKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFK 170 (263)
T ss_pred ------cCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHH
Confidence 0136778889988776667899999986544333 478899999999999999998654321100000
Q ss_pred ---CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 ---LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 ---~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....-.++.+++.++++++||+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~aGF~~v~ 199 (263)
T PTZ00098 171 AYIKKRKYTLIPIQEYGDLIKSCNFQNVV 199 (263)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHCCCCeee
Confidence 00112236899999999999999864
No 22
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.68 E-value=2.1e-15 Score=134.18 Aligned_cols=148 Identities=16% Similarity=0.128 Sum_probs=96.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||||||.||.+..||++|++|+|+|+|+.++..+.. +.. ... ...+ ..+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~----~~~------------~~~~-----~~~~~ 89 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENG----LTP------------TVTQ-----QGEFT 89 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcC----CCc------------ceec-----cccce
Confidence 35799999999999999999999999999999999986432 100 000 0000 00000
Q ss_pred CCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.....++++.++||.++... .++||.|+-+-++.+. +....|++.|.++|||||+++-++= .+... ....+.
T Consensus 90 ---~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~-~~~~~-~~~gpp 164 (213)
T TIGR03840 90 ---RYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL-DYDQS-EMAGPP 164 (213)
T ss_pred ---eeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE-EcCCC-CCCCcC
Confidence 00124788999999987643 3679988765433322 3346799999999999997553210 11111 112355
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++.+||.+++.. +|+|+.
T Consensus 165 ~~~~~~eL~~~f~~-~~~i~~ 184 (213)
T TIGR03840 165 FSVSPAEVEALYGG-HYEIEL 184 (213)
T ss_pred CCCCHHHHHHHhcC-CceEEE
Confidence 67999999999963 566653
No 23
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.67 E-value=1.5e-15 Score=135.69 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=103.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
..+.+.+.+.+..+ .++.+|||||||.|+.+..||++|++|+|+|+|+..+..+.. ..... +
T Consensus 22 p~~~L~~~~~~~~~-----~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~--~~~l~-------~---- 83 (218)
T PRK13255 22 VNPLLQKYWPALAL-----PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA--ENGLT-------P---- 83 (218)
T ss_pred CCHHHHHHHHhhCC-----CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH--HcCCC-------c----
Confidence 34455565544322 135799999999999999999999999999999999986432 01000 0
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCC-CceeEEEeccc-cc-CcchHHHHHHHHHHhccCCe
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATCFF-ID-CANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~ff-id-ta~n~~~yl~~I~~~LkpGG 255 (298)
+..+..........++++.++|+.++.... +.||.|.-.-+ ++ ..+....|++.|.++|||||
T Consensus 84 --------------~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 84 --------------QTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred --------------cccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 000000000011247889999999885432 68998875433 23 23345789999999999998
Q ss_pred EEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 256 ~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+++.++ +.|. .+....+...++.+||.+++.. +|+|+.
T Consensus 150 ~~~l~~-~~~~-~~~~~gPp~~~~~~el~~~~~~-~~~i~~ 187 (218)
T PRK13255 150 RGLLVT-LDYP-QEELAGPPFSVSDEEVEALYAG-CFEIEL 187 (218)
T ss_pred eEEEEE-EEeC-CccCCCCCCCCCHHHHHHHhcC-CceEEE
Confidence 654221 1121 1112345568999999999953 466653
No 24
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=1.7e-15 Score=137.68 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=101.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++...
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------- 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------- 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 4679999999999999999987 578999999999998876510
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccccc----------
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYH---------- 266 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~---------- 266 (298)
.++.+..+|+.++. .+++||+|++.+.+++..+...++++++++|||||.++...|-.+.
T Consensus 76 ---------~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~ 145 (258)
T PRK01683 76 ---------PDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREV 145 (258)
T ss_pred ---------CCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 14556777877664 3569999999999999999999999999999999999764432110
Q ss_pred -----cc----CCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 -----YS----NMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 -----~~----~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+. ..........+.+++..++.+.||.+..
T Consensus 146 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~ 184 (258)
T PRK01683 146 AENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDI 184 (258)
T ss_pred HccCchHHHhccccccCcCCCCHHHHHHHHHhCCCceee
Confidence 00 0000123446788999999999987643
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.66 E-value=3e-15 Score=140.40 Aligned_cols=139 Identities=15% Similarity=0.100 Sum_probs=101.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..++..|. .|+|+|.|..|+..++.+.....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-------------------------------- 168 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-------------------------------- 168 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc--------------------------------
Confidence 467999999999999999999987 59999999999976554321100
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccC---CC---
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSN---ML--- 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~---~~--- 271 (298)
...++.+..+++.++.. .++||+|++...+.+..++..+|++++++|||||.+|......-+..+ .+
T Consensus 169 ------~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~r 241 (314)
T TIGR00452 169 ------NDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDR 241 (314)
T ss_pred ------cCCCeEEEECCHHHCCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHH
Confidence 01245566677777653 458999999998999999999999999999999999842111100000 00
Q ss_pred ----CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ----NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ----~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
......+|.+++..+++++||+.++
T Consensus 242 y~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 242 YAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred HHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 0112346899999999999999875
No 26
>PRK05785 hypothetical protein; Provisional
Probab=99.66 E-value=1.7e-15 Score=135.94 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHhhhccC------ChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEE
Q psy3185 73 DLEKVQTTLKQFVRDWSEE------GSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQ 145 (298)
Q Consensus 73 ~~~~v~~~l~~~~RdWs~~------g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~ 145 (298)
....|++.+..+++.|+.. |...+ .-..+++.+....+ ++.+|||+|||||.++..|++. |.+|+
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~~s~g~~~~--wr~~~~~~l~~~~~------~~~~VLDlGcGtG~~~~~l~~~~~~~v~ 78 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRFISFNQDVR--WRAELVKTILKYCG------RPKKVLDVAAGKGELSYHFKKVFKYYVV 78 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhhccCCCcHH--HHHHHHHHHHHhcC------CCCeEEEEcCCCCHHHHHHHHhcCCEEE
Confidence 3456778888887777642 22221 11235555555443 2569999999999999999998 68999
Q ss_pred EeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCce
Q psy3185 146 GNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKW 225 (298)
Q Consensus 146 g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~f 225 (298)
|+|+|+.|+..++. + ...+.+|+..++.++++|
T Consensus 79 gvD~S~~Ml~~a~~---~--------------------------------------------~~~~~~d~~~lp~~d~sf 111 (226)
T PRK05785 79 ALDYAENMLKMNLV---A--------------------------------------------DDKVVGSFEALPFRDKSF 111 (226)
T ss_pred EECCCHHHHHHHHh---c--------------------------------------------cceEEechhhCCCCCCCE
Confidence 99999999998764 1 013567788887788999
Q ss_pred eEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 226 DCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 226 D~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
|+|++.|.|++.+++...+++++|+|||++.++-+
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile~ 146 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIAM 146 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHhcCceEEEEe
Confidence 99999999999999999999999999996545433
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=3.1e-15 Score=135.76 Aligned_cols=136 Identities=16% Similarity=0.238 Sum_probs=99.6
Q ss_pred CCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
++.+|||+|||+|.++..+++ .+..|+|+|+|+.|+..++..+...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------------------ 105 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 105 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 367999999999999999887 2578999999999999988743210
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEeccc---------
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPL--------- 263 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl--------- 263 (298)
....++.++.+|+.+++. +.+|+|++++.++..+ +...++++|+++|||||.++.....
T Consensus 106 --------~~~~~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~ 175 (247)
T PRK15451 106 --------KAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE 175 (247)
T ss_pred --------CCCCCeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHH
Confidence 001368889999988753 4599999887766543 4578999999999999999864321
Q ss_pred -c---cc-c---cCCC-----------CCCccCCCHHHHHHHHHhCCCEE
Q psy3185 264 -L---YH-Y---SNML-----------NEDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 264 -~---y~-~---~~~~-----------~~~~~~ls~eEl~~~~~~~GF~i 294 (298)
. |+ + .... .......|.++..++++++||+-
T Consensus 176 ~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 176 LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEH 225 (247)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchh
Confidence 1 11 0 0000 01223479999999999999974
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.65 E-value=4.2e-15 Score=133.90 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=102.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
++.+|||+|||+|.++..++++ +.+|+|+|+|+.|+..|+..++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~------------------------------ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 4679999999999999999985 568999999999999988743210
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc--hHHHHHHHHHHhccCCeEEEEecccc--------
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--NIVSFIETIFNILKPGGIWINLGPLL-------- 264 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~--n~~~yl~~I~~~LkpGG~~In~gPl~-------- 264 (298)
....++.++.+|+.++.. ..+|+|++.+.++..+ +...++++++++|||||.++...|..
T Consensus 103 --------~~~~~v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~ 172 (239)
T TIGR00740 103 --------HSEIPVEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH 172 (239)
T ss_pred --------CCCCCeEEEECChhhCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH
Confidence 011367889999988754 3589998888777653 56789999999999999998764421
Q ss_pred -----cc-c--cCCCC------------CCccCCCHHHHHHHHHhCCCEEE
Q psy3185 265 -----YH-Y--SNMLN------------EDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 265 -----y~-~--~~~~~------------~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
|. + ..... .....+|.+|+.++++++||..+
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~ 223 (239)
T TIGR00740 173 LLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHV 223 (239)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchH
Confidence 10 0 00000 12235799999999999999753
No 29
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.65 E-value=2.3e-15 Score=134.45 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=98.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.+.+|||||||.|..+..||.+|++|+|+|+|+..+..+..- +... |=+. .++...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e--~~~~-------~~~~---------------~~~~~~ 92 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEE--NNLE-------PTVT---------------SVGGFK 92 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHH--CTTE-------EECT---------------TCTTEE
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHH--hccC-------CCcc---------------ccccee
Confidence 457999999999999999999999999999999998876331 1000 0000 000000
Q ss_pred CCCCCCCCCeeEEeccccccccCC-CceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
.....++++.+|||.++.... ++||+|.=+-++. ......+|.+.+.++|||||.++-+. +.|...... .|.
T Consensus 93 ---~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~-l~~~~~~~~-GPP 167 (218)
T PF05724_consen 93 ---RYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT-LEYPQGEME-GPP 167 (218)
T ss_dssp ---EETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE-EES-CSCSS-SSS
T ss_pred ---eecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE-EEcCCcCCC-CcC
Confidence 001258999999999987544 6899998653322 34557789999999999999954222 344433222 467
Q ss_pred cCCCHHHHHHHHHhCCCEEEE
Q psy3185 276 IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++.+||.+++. .+|+|+.
T Consensus 168 f~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 168 FSVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp ----HHHHHHHHT-TTEEEEE
T ss_pred CCCCHHHHHHHhc-CCcEEEE
Confidence 7789999999997 7999875
No 30
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.65 E-value=3e-15 Score=141.62 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=105.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++. +..|+|+|.|+.|+..++....
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---------------------------------- 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---------------------------------- 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh----------------------------------
Confidence 4679999999999999999875 4689999999999998775210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc---ccccCCCCC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL---YHYSNMLNE 273 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~---y~~~~~~~~ 273 (298)
..++.+..+|+.++..++++||+|+++..+++.++....+++++++|||||.++..+|.. |........
T Consensus 159 --------~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~ 230 (340)
T PLN02490 159 --------LKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADV 230 (340)
T ss_pred --------ccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhh
Confidence 024567889988876667899999999888888889999999999999999987666532 111000000
Q ss_pred CccCCCHHHHHHHHHhCCCEEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+.+|+.++++++||+.+.
T Consensus 231 ~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 231 WMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred hccCCCHHHHHHHHHHCCCeEEE
Confidence 11235899999999999999764
No 31
>KOG1540|consensus
Probab=99.65 E-value=3.5e-15 Score=133.59 Aligned_cols=142 Identities=23% Similarity=0.354 Sum_probs=110.6
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC--------CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG--------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQT 189 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G--------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~ 189 (298)
..+.++||++||||-+|+-|.+.- -.|+..|+|++||..++.. +.+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR---a~~~---------------------- 153 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR---AKKR---------------------- 153 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH---Hhhc----------------------
Confidence 457899999999999999998762 4699999999999998773 2110
Q ss_pred cccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe-------cc
Q psy3185 190 MAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL-------GP 262 (298)
Q Consensus 190 r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~-------gP 262 (298)
.+.....+.++.||..++++++++||+.+.+|-|....++...+++.||+|||||.+..+ .|
T Consensus 154 -----------~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~ 222 (296)
T KOG1540|consen 154 -----------PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEP 222 (296)
T ss_pred -----------CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHH
Confidence 111223588999999999999999999999999999999999999999999999998632 24
Q ss_pred ccccccC-----CCC---------------CCccC--CCHHHHHHHHHhCCCEEE
Q psy3185 263 LLYHYSN-----MLN---------------EDSIE--PSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 263 l~y~~~~-----~~~---------------~~~~~--ls~eEl~~~~~~~GF~i~ 295 (298)
+.|.+.. .+. ..|++ ++.||+..+++.+||...
T Consensus 223 l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~ 277 (296)
T KOG1540|consen 223 LKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSV 277 (296)
T ss_pred HHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccc
Confidence 4332211 110 12333 788999999999999875
No 32
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=4.5e-15 Score=131.97 Aligned_cols=136 Identities=15% Similarity=0.071 Sum_probs=103.8
Q ss_pred eEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+|||+|||+|.++..+++.+ .+|+|+|+|+.|+..++......
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----------------------------------- 46 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----------------------------------- 46 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 79999999999999999873 68999999999999887633210
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc--ccccCCCCCCccC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL--YHYSNMLNEDSIE 277 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~--y~~~~~~~~~~~~ 277 (298)
....++.+..+|+...+. +++||+|++..++++..+...+++.++++|||||.++...+.. +.....+......
T Consensus 47 ---gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 122 (224)
T smart00828 47 ---GLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYL 122 (224)
T ss_pred ---CCCcceEEEecccccCCC-CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccccccccccc
Confidence 001367788888865533 4689999999988888999999999999999999998655431 1111111112335
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
++.+++.+++.+.||++++
T Consensus 123 ~s~~~~~~~l~~~Gf~~~~ 141 (224)
T smart00828 123 VTREEWAELLARNNLRVVE 141 (224)
T ss_pred CCHHHHHHHHHHCCCeEEE
Confidence 7899999999999999975
No 33
>KOG1270|consensus
Probab=99.63 E-value=1.7e-15 Score=136.13 Aligned_cols=186 Identities=19% Similarity=0.180 Sum_probs=121.8
Q ss_pred chHHHHHHHHHHHhhhccCChHHHh-----hhhHHHHHHHHhhCCCCC---CCCCCCeEEEecccCcHHHHHHHHcCCeE
Q psy3185 73 DLEKVQTTLKQFVRDWSEEGSEERK-----TCYEPIISEILARFPPET---INPKDVNILVPGAGLGRLAFEIARRGYVC 144 (298)
Q Consensus 73 ~~~~v~~~l~~~~RdWs~~g~~ER~-----~~~~~i~~~l~~~~p~~~---~~~~~~~VLdpGcG~Grla~ela~~G~~v 144 (298)
|-+.|+..-.+-...|+.+|-.+-- .....|.+-+...++... ..-.+.+|||+|||+|-|+..||+.|.+|
T Consensus 35 ~~~eV~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V 114 (282)
T KOG1270|consen 35 DVDEVKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQV 114 (282)
T ss_pred cHHHHHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCCee
Confidence 3366775555556677777744321 112234444544443110 01124679999999999999999999999
Q ss_pred EEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC-CCCCCCCeeEEeccccccccCCC
Q psy3185 145 QGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS-DYNDDCDFSMAAGDFLQVYVHPN 223 (298)
Q Consensus 145 ~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~-~~~~~~~~~~~~gDf~~~~~~~~ 223 (298)
+|+|.|..|+.+|+.- ++. .|. +.+-...+++...|.... .+
T Consensus 115 ~GID~s~~~V~vA~~h--~~~--------------------------------dP~~~~~~~y~l~~~~~~~E~~---~~ 157 (282)
T KOG1270|consen 115 TGIDASDDMVEVANEH--KKM--------------------------------DPVLEGAIAYRLEYEDTDVEGL---TG 157 (282)
T ss_pred EeecccHHHHHHHHHh--hhc--------------------------------Cchhccccceeeehhhcchhhc---cc
Confidence 9999999999999872 111 110 000001344555554443 46
Q ss_pred ceeEEEecccccCcchHHHHHHHHHHhccCCeEEE----EeccccccccCC---------C-CCCc--cCCCHHHHHHHH
Q psy3185 224 KWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI----NLGPLLYHYSNM---------L-NEDS--IEPSYEVVKQVI 287 (298)
Q Consensus 224 ~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I----n~gPl~y~~~~~---------~-~~~~--~~ls~eEl~~~~ 287 (298)
+||+|++.-.+++..++.++++.+.++|||||.++ |-+-+.|+..-. | +.+. -.++++|+..++
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL 237 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence 79999999999999999999999999999999875 322233332111 1 1122 347999999999
Q ss_pred HhCCCEEE
Q psy3185 288 QGLGFVYE 295 (298)
Q Consensus 288 ~~~GF~i~ 295 (298)
...|+.+.
T Consensus 238 ~~~~~~v~ 245 (282)
T KOG1270|consen 238 NANGAQVN 245 (282)
T ss_pred HhcCcchh
Confidence 99988764
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=3.7e-15 Score=125.08 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=86.4
Q ss_pred CCCeEEEecccCcHHHHHHHH-c--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR-R--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~-~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|+++..|++ . +.+++|+|+|+.|+..++....+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------------------------------- 51 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------------------------------- 51 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-------------------------------
Confidence 468999999999999999994 4 678999999999999998854321
Q ss_pred CCCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.. .++.+..+|+.++... +++||+|++..++++..+....++.+.++|||||+++...+
T Consensus 52 -------~~-~ni~~~~~d~~~l~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 52 -------GL-DNIEFIQGDIEDLPQELEEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp -------TS-TTEEEEESBTTCGCGCSSTTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------cc-cccceEEeehhccccccCCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 11 2789999999996411 28999999998889999999999999999999999985433
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.62 E-value=4e-14 Score=126.05 Aligned_cols=184 Identities=18% Similarity=0.162 Sum_probs=122.6
Q ss_pred cchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEee
Q psy3185 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNE 148 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D 148 (298)
.+..++.+.+..++..|..-...-....+......+...+.. .++.+|||+|||+|.++..++..+ .+++|+|
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D 83 (239)
T PRK00216 8 EKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGV----RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLD 83 (239)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCC----CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEe
Confidence 455677777777776665210000000111222333333321 235799999999999999999886 6899999
Q ss_pred CCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEE
Q psy3185 149 FSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCV 228 (298)
Q Consensus 149 ~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V 228 (298)
+|+.|+..++...... +...++.+..+|+.+....+++||+|
T Consensus 84 ~s~~~~~~a~~~~~~~--------------------------------------~~~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 84 FSEGMLAVGREKLRDL--------------------------------------GLSGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCHHHHHHHHHhhccc--------------------------------------ccccCeEEEecccccCCCCCCCccEE
Confidence 9999999887632110 00136778889988876666899999
Q ss_pred EecccccCcchHHHHHHHHHHhccCCeEEEEecccc-cc---------------------ccCCCCC-----C--ccCCC
Q psy3185 229 ATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL-YH---------------------YSNMLNE-----D--SIEPS 279 (298)
Q Consensus 229 ~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~-y~---------------------~~~~~~~-----~--~~~ls 279 (298)
++.+.++...++...++.+.++|+|||+++.+.... .+ +...... + ...++
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPD 205 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCC
Confidence 999989988999999999999999999987542110 00 0000000 0 12357
Q ss_pred HHHHHHHHHhCCCEEEEe
Q psy3185 280 YEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 280 ~eEl~~~~~~~GF~i~~~ 297 (298)
.+++..+++++||+++..
T Consensus 206 ~~~~~~~l~~aGf~~~~~ 223 (239)
T PRK00216 206 QEELAAMLEEAGFERVRY 223 (239)
T ss_pred HHHHHHHHHhCCCceeee
Confidence 899999999999998753
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.61 E-value=1.8e-14 Score=142.13 Aligned_cols=138 Identities=17% Similarity=0.152 Sum_probs=105.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..||+. |..|+|+|+|+.|+..|+.... .
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~---~------------------------------- 311 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI---G------------------------------- 311 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh---c-------------------------------
Confidence 4679999999999999999986 7899999999999998865110 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCC-------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNM------- 270 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~------- 270 (298)
...++.+..+|+.+...++++||+|++...+.+.++...++++++++|||||.++...+..-.....
T Consensus 312 ------~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 385 (475)
T PLN02336 312 ------RKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYI 385 (475)
T ss_pred ------CCCceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHH
Confidence 0136788899988876567899999999888888999999999999999999988543211000000
Q ss_pred CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 ~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....-..+.+++.++++++||+++.
T Consensus 386 ~~~g~~~~~~~~~~~~l~~aGF~~i~ 411 (475)
T PLN02336 386 KQRGYDLHDVQAYGQMLKDAGFDDVI 411 (475)
T ss_pred HhcCCCCCCHHHHHHHHHHCCCeeee
Confidence 00012245889999999999999874
No 37
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=2.4e-14 Score=128.28 Aligned_cols=158 Identities=10% Similarity=0.005 Sum_probs=104.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+.+.+.+.+.-+ .++.+|||||||.|+.+..||.+||+|+|+|+|+..+..+..-. .+.|=+.
T Consensus 30 p~L~~~~~~l~~-----~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~---------~~~~~~~--- 92 (226)
T PRK13256 30 EFLVKHFSKLNI-----NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQN---------TINYEVI--- 92 (226)
T ss_pred HHHHHHHHhcCC-----CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHc---------CCCccee---
Confidence 344566655432 23579999999999999999999999999999999987654310 0000000
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC---CCceeEEEec-cccc-CcchHHHHHHHHHHhccCCe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH---PNKWDCVATC-FFID-CANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~---~~~fD~V~t~-ffid-ta~n~~~yl~~I~~~LkpGG 255 (298)
+......-...++.+.+|||.++... .+.||+|.-+ +|+. ..+...+|.+.+.++|+|||
T Consensus 93 ---------------~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg 157 (226)
T PRK13256 93 ---------------HGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNT 157 (226)
T ss_pred ---------------cccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 00000001125789999999998532 2689998654 3333 33445789999999999999
Q ss_pred EEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEE
Q psy3185 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 256 ~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i 294 (298)
.++-+. +.+......|....+.+|+.+++.. +|++
T Consensus 158 ~llll~---~~~~~~~~GPPf~v~~~e~~~lf~~-~~~i 192 (226)
T PRK13256 158 QILLLV---MEHDKKSQTPPYSVTQAELIKNFSA-KIKF 192 (226)
T ss_pred EEEEEE---EecCCCCCCCCCcCCHHHHHHhccC-CceE
Confidence 987542 2222223456788899999999954 4443
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=3.5e-14 Score=130.84 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=100.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.... .++.+|||+|||.|.++..+|++ |..|+|+.+|..+...++..... .
T Consensus 50 k~~~~~~~~~l----~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~---~-------------- 108 (273)
T PF02353_consen 50 KLDLLCEKLGL----KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIRE---A-------------- 108 (273)
T ss_dssp HHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHC---S--------------
T ss_pred HHHHHHHHhCC----CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHh---c--------------
Confidence 45555555442 35789999999999999999999 99999999999999988763321 1
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...+.+..+|+.++. ++||.|+|.-.+.+. +|...|+++|+++|||||.++.
T Consensus 109 -------------------gl--~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 109 -------------------GL--EDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp -------------------TS--SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred -------------------CC--CCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 11 136788999998874 399999999888877 7899999999999999999863
Q ss_pred e---cc-ccccccCC-C--------CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 L---GP-LLYHYSNM-L--------NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~---gP-l~y~~~~~-~--------~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
- .+ -.++.... . -+.+..+|.+++...+++.||++...
T Consensus 165 q~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~ 215 (273)
T PF02353_consen 165 QTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDV 215 (273)
T ss_dssp EEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEE
T ss_pred EecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEE
Confidence 1 11 11111100 0 01234468999999999999998753
No 39
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.61 E-value=3.2e-14 Score=126.42 Aligned_cols=137 Identities=16% Similarity=0.229 Sum_probs=101.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+++.+..|+|+|+|+.|+..++..+...
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~---------------------------------- 100 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR---------------------------------- 100 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999999999999999999999999999999887633210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccc----------c
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLY----------H 266 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y----------~ 266 (298)
....++.+..+|+.+.. ++||+|++++.+.+. +++...++++.+++++|+++. +.|-.+ .
T Consensus 101 ----~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~~~ 172 (219)
T TIGR02021 101 ----DVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT-FAPKTAWLAFLKMIGEL 172 (219)
T ss_pred ----CCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE-ECCCchHHHHHHHHHhh
Confidence 00126778889987763 789999988766543 457789999999999877765 333111 0
Q ss_pred ccCCC-CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 267 YSNML-NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 267 ~~~~~-~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+.... ......++.+++.++++++||++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 173 FPGSSRATSAYLHPMTDLERALGELGWKIVRE 204 (219)
T ss_pred CcCcccccceEEecHHHHHHHHHHcCceeeee
Confidence 11101 11223478999999999999999865
No 40
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.60 E-value=5.9e-14 Score=124.52 Aligned_cols=139 Identities=17% Similarity=0.129 Sum_probs=103.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.+.+|||+|||+|.++..+++.|..|+|+|.|+.|+..++..+.. .
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~------------------------------- 90 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK---D------------------------------- 90 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH---c-------------------------------
Confidence 467999999999999999999999999999999999887763221 0
Q ss_pred CCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc----c--------
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL----Y-------- 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~----y-------- 265 (298)
. ..++.+..+|+.+.... +++||+|++...+++..++..+++.+.++|+|||.++...+.. +
T Consensus 91 ----~-~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~ 165 (224)
T TIGR01983 91 ----P-LLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAE 165 (224)
T ss_pred ----C-CCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhh
Confidence 0 01466777887776543 3799999999889989999999999999999999887433210 0
Q ss_pred -cccCCC--C-CCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 266 -HYSNML--N-EDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 266 -~~~~~~--~-~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.....+ . .....++.+++.+++++.||+++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 166 YILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred hhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 000000 0 111235889999999999999964
No 41
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.60 E-value=2.6e-14 Score=131.03 Aligned_cols=137 Identities=22% Similarity=0.243 Sum_probs=104.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+++. |. .|+|+|.|+.|+..++......
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------------------------------- 125 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------------------------------- 125 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999888775 53 6999999999999988732210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCC----
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML---- 271 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~---- 271 (298)
.+ .++.+..+|+.++...+++||+|++...+++.++...++++++++|||||.++..+...- ...+
T Consensus 126 -----g~---~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~--~~~~~~~~ 195 (272)
T PRK11873 126 -----GY---TNVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR--GELPEEIR 195 (272)
T ss_pred -----CC---CCEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc--CCCCHHHH
Confidence 00 256788899888766678999999998888888999999999999999999986432110 0000
Q ss_pred -------CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 -------NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 -------~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
....-.++.+++.+++++.||..+.
T Consensus 196 ~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 196 NDAELYAGCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred HhHHHHhccccCCCCHHHHHHHHHHCCCCceE
Confidence 0012236789999999999998754
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.59 E-value=1.2e-13 Score=123.58 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=107.0
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNI 183 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~ 183 (298)
++.+....+. .++.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++..... .
T Consensus 37 ~~~l~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~---------------- 93 (233)
T PRK05134 37 LNYIREHAGG----LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALE---S---------------- 93 (233)
T ss_pred HHHHHHhccC----CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHH---c----------------
Confidence 4555555432 2467999999999999999999999999999999999887653211 0
Q ss_pred cccccccccccCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 184 LTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 184 ~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
...+.+..+|+..... ..++||+|++.+.+.+..+....++.+.++|+|||.++...|
T Consensus 94 ---------------------~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 94 ---------------------GLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ---------------------CCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 0134455666665532 347999999999899889999999999999999999874332
Q ss_pred c----c---------ccccC--CC-CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 263 L----L---------YHYSN--ML-NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 263 l----~---------y~~~~--~~-~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
- . |.... .. ....-.++.+++..++++.||+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~ 202 (233)
T PRK05134 153 NRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQD 202 (233)
T ss_pred CCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEee
Confidence 1 0 00000 00 0112246899999999999999875
No 43
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.58 E-value=5.8e-14 Score=131.79 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=97.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..|+++|++|+|+|+|+.|+..++........ .
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~-----------------------------~-- 192 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALA-----------------------------A-- 192 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccc-----------------------------c--
Confidence 467999999999999999999999999999999999988873321000 0
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEecccccccc------C-
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYHYS------N- 269 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y~~~------~- 269 (298)
.....++.+..+|+.++ +++||+|+++..+.+.++ ....++.+.+ +.+||++|.+.|-.+.+. .
T Consensus 193 ---~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~ 265 (315)
T PLN02585 193 ---LPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGEL 265 (315)
T ss_pred ---cccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhh
Confidence 00012566777887554 578999998876654433 3456666665 568899888777422211 0
Q ss_pred CCCC----CccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 270 MLNE----DSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 270 ~~~~----~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.++. .....+.+|+.++++++||++...
T Consensus 266 ~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 266 FPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred cCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 0111 122358999999999999999754
No 44
>PRK06202 hypothetical protein; Provisional
Probab=99.57 E-value=6.3e-14 Score=125.69 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=93.8
Q ss_pred CCCeEEEecccCcHHHHHHHH----cC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR----RG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAV 192 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~----~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~ 192 (298)
++.+|||+|||+|.++..|++ .| .+|+|+|+|+.|+..++.... .
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---~-------------------------- 110 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---R-------------------------- 110 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---c--------------------------
Confidence 467999999999999999885 35 489999999999998865210 0
Q ss_pred ccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEe---ccccc--
Q psy3185 193 TFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINL---GPLLY-- 265 (298)
Q Consensus 193 ~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~---gPl~y-- 265 (298)
.++.+..++...+...+++||+|++++++++.++ +...++++++++| |+++|+- +++.|
T Consensus 111 -------------~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~~~~ 176 (232)
T PRK06202 111 -------------PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLAYAL 176 (232)
T ss_pred -------------CCCeEEEEecccccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHHHHH
Confidence 1233344444334335689999999999998876 4679999999998 6666651 11111
Q ss_pred -c------ccC----CCCCCc--cCCCHHHHHHHHHhCCCEEEEe
Q psy3185 266 -H------YSN----MLNEDS--IEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 266 -~------~~~----~~~~~~--~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
. ..+ .....+ -.++.+|+.+++++ ||++...
T Consensus 177 ~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 177 FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQ 220 (232)
T ss_pred HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEec
Confidence 0 000 001122 24899999999999 9998764
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.57 E-value=3.4e-14 Score=126.20 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=99.1
Q ss_pred CCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++.+. .++|+|.|+.|+..++..+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~------------------------------------ 78 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL------------------------------------ 78 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc------------------------------------
Confidence 47899999999999999999874 5799999999998776411
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCC---CC-C
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNM---LN-E 273 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~---~~-~ 273 (298)
+ .++.++.+|+.+....+++||+|++.+.+++..+...+++.+.++|||||.++...|..-..... .. .
T Consensus 79 -----~--~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~ 151 (240)
T TIGR02072 79 -----S--ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQH 151 (240)
T ss_pred -----C--CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHh
Confidence 0 14567888888876667899999999999999899999999999999999998655422111000 00 1
Q ss_pred CccCCCHHHHHHHHHhCCCEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
..-..+.+++.+++.+. |...
T Consensus 152 ~~~~~~~~~~~~~l~~~-f~~~ 172 (240)
T TIGR02072 152 GLRYLSLDELKALLKNS-FELL 172 (240)
T ss_pred ccCCCCHHHHHHHHHHh-cCCc
Confidence 12235678888888876 6543
No 46
>KOG1271|consensus
Probab=99.56 E-value=4.4e-14 Score=120.87 Aligned_cols=159 Identities=21% Similarity=0.346 Sum_probs=107.0
Q ss_pred hccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe--EEEeeCCHHHHHHHHHHHhhhh
Q psy3185 88 WSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV--CQGNEFSLFMLFASNFILNKCR 165 (298)
Q Consensus 88 Ws~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~--v~g~D~S~~Ml~~a~~~l~~~~ 165 (298)
|..+...|| |+++|..+...........+|||+|||.|.+.+.|++.||. .+|+|+|+..+..|+.+..+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 888777787 77777766541111223349999999999999999999986 8999999999998887654321
Q ss_pred hccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccCcchHHHHH
Q psy3185 166 EKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDCANNIVSFI 244 (298)
Q Consensus 166 ~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidta~n~~~yl 244 (298)
.. |.+ .+..-|+.. | .+..++|.-+ .+.++||+|-.+- -++ ..+..|+
T Consensus 116 ~~-------------n~I-------~f~q~DI~~---~-----~~~~~qfdlv-lDKGT~DAisLs~d~~~--~r~~~Y~ 164 (227)
T KOG1271|consen 116 FS-------------NEI-------RFQQLDITD---P-----DFLSGQFDLV-LDKGTLDAISLSPDGPV--GRLVVYL 164 (227)
T ss_pred CC-------------cce-------eEEEeeccC---C-----cccccceeEE-eecCceeeeecCCCCcc--cceeeeh
Confidence 11 100 001112211 0 1233333222 3567888776552 221 2236799
Q ss_pred HHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 245 ETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 245 ~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..+.++|+|||+++. .+..+|.+||.+.+++.||++..+
T Consensus 165 d~v~~ll~~~gifvI--------------tSCN~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 165 DSVEKLLSPGGIFVI--------------TSCNFTKDELVEEFENFNFEYLST 203 (227)
T ss_pred hhHhhccCCCcEEEE--------------EecCccHHHHHHHHhcCCeEEEEe
Confidence 999999999999985 356778999999999999998753
No 47
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.56 E-value=2.9e-13 Score=118.14 Aligned_cols=119 Identities=17% Similarity=0.150 Sum_probs=92.2
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|++ +..|+|+|.|+.|+..++......
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~--------------------------------- 92 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL--------------------------------- 92 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc---------------------------------
Confidence 679999999999999999974 578999999999999888743220
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
. ..++++..+|+.++.. .++||+|++.. ..++..+++.++++|||||+++.+-+-
T Consensus 93 -----~-l~~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~-------------- 147 (187)
T PRK00107 93 -----G-LKNVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR-------------- 147 (187)
T ss_pred -----C-CCCEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC--------------
Confidence 0 0248889999888765 67999999864 346788999999999999999854211
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
-...++.++.+..|+.+..
T Consensus 148 ~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 148 DPEEEIAELPKALGGKVEE 166 (187)
T ss_pred ChHHHHHHHHHhcCceEee
Confidence 1256677888878888653
No 48
>PRK08317 hypothetical protein; Provisional
Probab=99.55 E-value=2.1e-13 Score=120.92 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=107.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+.+.+.+.++. .++.+|||+|||+|.++..+++.. ..|+|+|.|+.|+..++.....
T Consensus 7 ~~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---------------- 66 (241)
T PRK08317 7 YRARTFELLAV----QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---------------- 66 (241)
T ss_pred HHHHHHHHcCC----CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----------------
Confidence 33444444442 246799999999999999999873 5799999999999988762100
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
...++.+..+|+......+++||+|++...+++..+...++++++++|||||.++.
T Consensus 67 ------------------------~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 67 ------------------------LGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred ------------------------CCCceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 01367788888877665678999999999999999999999999999999999986
Q ss_pred eccc----cccccCC----------CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 260 LGPL----LYHYSNM----------LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 260 ~gPl----~y~~~~~----------~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..|- .+...+. .....-..+..++.+++++.||+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 173 (241)
T PRK08317 123 LDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIE 173 (241)
T ss_pred EecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCcee
Confidence 5431 1111000 00011123457899999999998653
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=1.7e-13 Score=118.95 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=88.6
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|..+ .+|+|+|.|+.|+..++...++.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~--------------------------------- 89 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL--------------------------------- 89 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh---------------------------------
Confidence 5799999999999999998765 57999999999998887633210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
.+ .++.++.+|+.++. ..++||+|++.. ..++..+++.++++|||||+++.. +..
T Consensus 90 ---~~---~~i~~i~~d~~~~~-~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~-----~~~--------- 144 (181)
T TIGR00138 90 ---GL---NNVEIVNGRAEDFQ-HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAY-----KGK--------- 144 (181)
T ss_pred ---CC---CCeEEEecchhhcc-ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEE-----cCC---------
Confidence 00 25788999998863 467999988765 345677889999999999999842 211
Q ss_pred CCHHHHHHHHHh---CCCEEEE
Q psy3185 278 PSYEVVKQVIQG---LGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~---~GF~i~~ 296 (298)
-...++..+.++ .||+.++
T Consensus 145 ~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 145 KYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred CcHHHHHHHHHhhhhcCceEee
Confidence 114555555555 8998765
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.55 E-value=2.3e-13 Score=119.88 Aligned_cols=137 Identities=23% Similarity=0.251 Sum_probs=103.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC---eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY---VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~---~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+++.+. +++|+|.|+.|+..++....
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 467999999999999999998864 79999999999987765211
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecccc--c--------
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLL--Y-------- 265 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~--y-------- 265 (298)
...++.+..+|+.+....+++||+|++.+.+++..++..+++.+.++|||||.++..+... .
T Consensus 86 --------~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~ 157 (223)
T TIGR01934 86 --------LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYK 157 (223)
T ss_pred --------cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHH
Confidence 0125677888888876556899999999999989999999999999999999998543210 0
Q ss_pred -c-----------ccCCCCC-------CccCCCHHHHHHHHHhCCCEEEE
Q psy3185 266 -H-----------YSNMLNE-------DSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 266 -~-----------~~~~~~~-------~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
. +...... ....++.+++.+++++.||+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 207 (223)
T TIGR01934 158 FYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVR 207 (223)
T ss_pred HHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccce
Confidence 0 0000000 01235889999999999999764
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.54 E-value=2e-13 Score=131.56 Aligned_cols=132 Identities=18% Similarity=0.171 Sum_probs=95.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+|+. |.+|+|+|+|+.|+..++.... .
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~---~------------------------------- 212 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA---G------------------------------- 212 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---c-------------------------------
Confidence 4679999999999999999986 7899999999999998876221 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccc---cccccCCC-
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPL---LYHYSNML- 271 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl---~y~~~~~~- 271 (298)
.++++..+|+.++ +++||+|++..++++. .+...+++.++++|||||+++..... .+...+..
T Consensus 213 --------l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i 281 (383)
T PRK11705 213 --------LPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWI 281 (383)
T ss_pred --------CeEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCc
Confidence 1355667777655 4789999988777765 56789999999999999999753211 00000000
Q ss_pred ----CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ----NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ----~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+...-++.+++...++ .||++..
T Consensus 282 ~~yifp~g~lps~~~i~~~~~-~~~~v~d 309 (383)
T PRK11705 282 NKYIFPNGCLPSVRQIAQASE-GLFVMED 309 (383)
T ss_pred eeeecCCCcCCCHHHHHHHHH-CCcEEEE
Confidence 01123467899988876 5899875
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.54 E-value=2.9e-14 Score=111.50 Aligned_cols=93 Identities=24% Similarity=0.327 Sum_probs=72.8
Q ss_pred EEEecccCcHHHHHHHHcC-----CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 123 ILVPGAGLGRLAFEIARRG-----YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 123 VLdpGcG~Grla~ela~~G-----~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
|||+|||+|+.+..+++.. ..++|+|+|+.|+..++..... .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---~------------------------------ 47 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---D------------------------------ 47 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH---T------------------------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh---c------------------------------
Confidence 7999999999999999884 7899999999999988763211 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccc-cc--CcchHHHHHHHHHHhccCCe
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF-ID--CANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff-id--ta~n~~~yl~~I~~~LkpGG 255 (298)
..++.++++|+.++....++||+|++.+- ++ +.+.+..+++++.++|||||
T Consensus 48 -------~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 48 -------GPKVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -------TTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -------CCceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 12677899999998777789999998533 44 44568899999999999998
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.53 E-value=2.5e-15 Score=116.83 Aligned_cols=97 Identities=24% Similarity=0.338 Sum_probs=58.8
Q ss_pred EEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC
Q psy3185 124 LVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD 201 (298)
Q Consensus 124 LdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~ 201 (298)
||+|||+|+++..++.. +.+++|+|+|+.|+..++..+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~----------------------------------- 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN----------------------------------- 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------------------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-----------------------------------
Confidence 79999999999999998 77899999999999665542221000
Q ss_pred CCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 202 YNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 202 ~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.....+.+...|..... ..++||+|++...+++.+++..+++.++++|||||++
T Consensus 46 -~~~~~~~~~~~~~~~~~-~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 46 -DNFERLRFDVLDLFDYD-PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---EEEEE--SSS---CC-C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred -cceeEEEeecCChhhcc-cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 00001222222222221 1269999999999999999999999999999999975
No 54
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.52 E-value=2.5e-13 Score=118.65 Aligned_cols=130 Identities=13% Similarity=0.127 Sum_probs=93.1
Q ss_pred CCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+++. +..++|+|.|+.|+..++. +
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~---~----------------------------------- 55 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA---R----------------------------------- 55 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH---c-----------------------------------
Confidence 569999999999999999865 5679999999999987643 0
Q ss_pred CCCCCCCCCeeEEeccccc-cc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE-Eeccc-----cc-----
Q psy3185 199 TSDYNDDCDFSMAAGDFLQ-VY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI-NLGPL-----LY----- 265 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~-~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I-n~gPl-----~y----- 265 (298)
++.+..+|+.+ +. ..+++||+|++...+++.+++...++++.++++++.+-+ |.+.. .+
T Consensus 56 --------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~ 127 (194)
T TIGR02081 56 --------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRM 127 (194)
T ss_pred --------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCcc
Confidence 23345556544 21 346789999999999999999999999999888753221 11110 01
Q ss_pred --------cccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 266 --------HYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 266 --------~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+.+ ..+....+.+++.++++++||++++.
T Consensus 128 ~~~~~~~~~~~~--~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 128 PVTGELPYDWYN--TPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred ccCCCCCccccC--CCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 1100 01123578999999999999999864
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=3e-13 Score=133.48 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=100.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|+++..|++.+.+|+|+|+|+.|+..++...+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~------------------------------------ 80 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESING------------------------------------ 80 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhc------------------------------------
Confidence 35699999999999999999999999999999999986643110
Q ss_pred CCCCCCCCCeeEEeccccc--cccCCCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEEEecccccccc-CC--C
Q psy3185 199 TSDYNDDCDFSMAAGDFLQ--VYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYHYS-NM--L 271 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~--~~~~~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~In~gPl~y~~~-~~--~ 271 (298)
...++.+..+|+.. ++.++++||+|++.+.+++..+ +...++.++++|||||+++..... ++.. +. .
T Consensus 81 -----~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~-~~~~~~~~~~ 154 (475)
T PLN02336 81 -----HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC-FHQSGDSKRK 154 (475)
T ss_pred -----cCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCCccccc
Confidence 01256778888753 3345689999999888876655 678999999999999998753221 2211 11 1
Q ss_pred CCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 272 NEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 272 ~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
..++.-.+..++.+++.++||...
T Consensus 155 ~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 155 NNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred CCCCeecChHHHHHHHHHheeccC
Confidence 124555678899999999999765
No 56
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=9.5e-13 Score=120.92 Aligned_cols=150 Identities=19% Similarity=0.311 Sum_probs=110.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.+.+.+.. .++.+|||+|||.|.++...|++ |.+|+|+++|..|+..++..... .
T Consensus 60 k~~~~~~kl~L----~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~---~-------------- 118 (283)
T COG2230 60 KLDLILEKLGL----KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAA---R-------------- 118 (283)
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHH---c--------------
Confidence 55666666653 36889999999999999999998 79999999999999988874321 1
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ..++.+...|..++ .+.||.|||.=.+++. +|...||+.++++|+|||.+++
T Consensus 119 -------------------gl--~~~v~v~l~d~rd~---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 119 -------------------GL--EDNVEVRLQDYRDF---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred -------------------CC--CcccEEEecccccc---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEE
Confidence 01 13677777887776 3459999998766644 5699999999999999999975
Q ss_pred e---cccc-c-cccCC----CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 260 L---GPLL-Y-HYSNM----LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 260 ~---gPl~-y-~~~~~----~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
. +|-. + ++..- -.+...-+|..++.+.....||.+.+.
T Consensus 175 h~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~ 221 (283)
T COG2230 175 HSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDV 221 (283)
T ss_pred EEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehH
Confidence 3 2210 0 11000 012345567999999999999998753
No 57
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.49 E-value=3e-13 Score=124.41 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=80.6
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-----CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~ 177 (298)
+.+.|.+.++ ....+|||+|||+|.++..|++. +..|+|+|+|..|+..|+...
T Consensus 74 i~~~l~~~l~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------------- 132 (272)
T PRK11088 74 VANLLAERLD-----EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------------- 132 (272)
T ss_pred HHHHHHHhcC-----CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------------
Confidence 4444555554 23568999999999999999875 247999999999998875410
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 178 QTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 178 ~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.++.+..+|..+++..+++||+|++.+.- ..+++++++|||||++
T Consensus 133 ----------------------------~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~l 177 (272)
T PRK11088 133 ----------------------------PQVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIV 177 (272)
T ss_pred ----------------------------CCCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEE
Confidence 24667888888887778899999987641 2368899999999999
Q ss_pred EEeccc
Q psy3185 258 INLGPL 263 (298)
Q Consensus 258 In~gPl 263 (298)
|.+.|-
T Consensus 178 i~~~p~ 183 (272)
T PRK11088 178 ITVTPG 183 (272)
T ss_pred EEEeCC
Confidence 987663
No 58
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.49 E-value=2.2e-12 Score=114.78 Aligned_cols=137 Identities=15% Similarity=0.233 Sum_probs=96.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..|++.|..|+|+|+|+.|+..++......
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~---------------------------------- 108 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA---------------------------------- 108 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 3579999999999999999999999999999999999888643210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccC--cchHHHHHHHHHHhccCCeEEEEeccc---cc--c-----
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC--ANNIVSFIETIFNILKPGGIWINLGPL---LY--H----- 266 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt--a~n~~~yl~~I~~~LkpGG~~In~gPl---~y--~----- 266 (298)
....++.+..+|+.. .+++||+|++...+++ .+++...++.+.+++++|+ ++.+.|- .. .
T Consensus 109 ----~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-~i~~~~~~~~~~~~~~l~~~ 180 (230)
T PRK07580 109 ----GLAGNITFEVGDLES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL-IFTFAPYTPLLALLHWIGGL 180 (230)
T ss_pred ----CCccCcEEEEcCchh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE-EEEECCccHHHHHHHHhccc
Confidence 001257788888432 3578999998776643 4567788888888775544 4544331 00 0
Q ss_pred ccCC-CCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 267 YSNM-LNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 267 ~~~~-~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+... .......++.+++..++++.||++...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 181 FPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred cCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 0000 111234578999999999999998753
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.47 E-value=1.2e-12 Score=112.76 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=91.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+++.|..|+|+|+|+.|+..++..+...
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------------- 64 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLN----------------------------------- 64 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc-----------------------------------
Confidence 468999999999999999999889999999999999887633210
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCc---------------------chHHHHHHHHHHhccCCeEEE
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA---------------------NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta---------------------~n~~~yl~~I~~~LkpGG~~I 258 (298)
..++.+..+|+.+.. .++||+|++..-.... .-+..+++.+.++|||||.++
T Consensus 65 -----~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~ 137 (179)
T TIGR00537 65 -----NVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQ 137 (179)
T ss_pred -----CCceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEE
Confidence 024567778876643 4589999876321111 114678999999999999987
Q ss_pred EeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 259 NLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 259 n~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.+.+ .. -...++...+++.||..+..
T Consensus 138 ~~~~----~~---------~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 138 LIQS----SL---------NGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred EEEe----cc---------CChHHHHHHHHhCCCeEEEE
Confidence 5422 11 12688999999999998653
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=5.5e-13 Score=117.59 Aligned_cols=125 Identities=17% Similarity=0.055 Sum_probs=88.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..||+. +..|+|+|+|+.|+..++......
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~-------------------------------- 87 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE-------------------------------- 87 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--------------------------------
Confidence 4679999999999999999987 357999999999999887632210
Q ss_pred CCCCCCCCCCCeeEEeccc-cccc--cCCCceeEEEecccccCc---c-----hHHHHHHHHHHhccCCeEEEEeccccc
Q psy3185 197 INTSDYNDDCDFSMAAGDF-LQVY--VHPNKWDCVATCFFIDCA---N-----NIVSFIETIFNILKPGGIWINLGPLLY 265 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf-~~~~--~~~~~fD~V~t~ffidta---~-----n~~~yl~~I~~~LkpGG~~In~gPl~y 265 (298)
. ..++.++.+|+ ..+. .++++||+|++.|-.... . ....+++.++++|||||+++...+-.
T Consensus 88 ----~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~- 159 (202)
T PRK00121 88 ----G---LTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE- 159 (202)
T ss_pred ----C---CCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH-
Confidence 0 03678899998 5554 356889999876532111 1 14679999999999999998543310
Q ss_pred cccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 266 HYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 266 ~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
--..++.+.+++.||...
T Consensus 160 ------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 160 ------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ------------HHHHHHHHHHHhCccccc
Confidence 013456666667776654
No 61
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.45 E-value=1.5e-12 Score=121.55 Aligned_cols=115 Identities=20% Similarity=0.153 Sum_probs=78.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccc
Q psy3185 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176 (298)
Q Consensus 100 ~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~ 176 (298)
+....+.+.+.++ ++.+|||+|||+|+.+..|++. ++.|+|+|+|..||..++..+.. .
T Consensus 50 l~~~~~~ia~~~~------~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~--~---------- 111 (301)
T TIGR03438 50 LERHADEIAAATG------AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA--D---------- 111 (301)
T ss_pred HHHHHHHHHHhhC------CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh--h----------
Confidence 3334445555554 3568999999999999999987 68999999999999988763321 0
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCce----eEEEe---cccccCcchHHHHHHHHHH
Q psy3185 177 QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKW----DCVAT---CFFIDCANNIVSFIETIFN 249 (298)
Q Consensus 177 ~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~f----D~V~t---~ffidta~n~~~yl~~I~~ 249 (298)
.| ..++..+.|||.+.......+ ++++. .+..-..++...+|+.+++
T Consensus 112 -----------------~p---------~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~ 165 (301)
T TIGR03438 112 -----------------YP---------QLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQ 165 (301)
T ss_pred -----------------CC---------CceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHH
Confidence 01 135667889987642212222 23332 1222245567889999999
Q ss_pred hccCCeEEE
Q psy3185 250 ILKPGGIWI 258 (298)
Q Consensus 250 ~LkpGG~~I 258 (298)
.|+|||.++
T Consensus 166 ~L~pgG~~l 174 (301)
T TIGR03438 166 LLGPGGGLL 174 (301)
T ss_pred hcCCCCEEE
Confidence 999999987
No 62
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.43 E-value=2.8e-12 Score=116.61 Aligned_cols=117 Identities=23% Similarity=0.287 Sum_probs=85.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.|.. |+|+|+|+.|+..++..... + .+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~----~---------------------------~~ 167 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL----N---------------------------GV 167 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c---------------------------CC
Confidence 4679999999999999999999876 99999999999988763221 0 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
. ..+.+..+| .+||+|++... +..+..+++.+.++|||||++|..|.+.
T Consensus 168 -----~--~~~~~~~~~--------~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lilsgi~~------------- 216 (250)
T PRK00517 168 -----E--LNVYLPQGD--------LKADVIVANIL---ANPLLELAPDLARLLKPGGRLILSGILE------------- 216 (250)
T ss_pred -----C--ceEEEccCC--------CCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEEEECcH-------------
Confidence 0 122222222 27999987643 3446688999999999999999655421
Q ss_pred CCHHHHHHHHHhCCCEEEEe
Q psy3185 278 PSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~~ 297 (298)
-..+++.+.+++.||+++..
T Consensus 217 ~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 217 EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred hhHHHHHHHHHHCCCEEEEE
Confidence 12678999999999998753
No 63
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.42 E-value=3.9e-12 Score=118.09 Aligned_cols=121 Identities=20% Similarity=0.171 Sum_probs=88.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.|. .|+|+|+|+.|+..++..... +.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~----n~---------------------------- 206 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL----NQ---------------------------- 206 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----cC----------------------------
Confidence 357999999999999999999986 699999999999988763221 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
+. ..+....++.... .+++||+|++... +..+..++..+.++|||||+++..|.+..
T Consensus 207 ----~~--~~~~~~~~~~~~~--~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~sgi~~~------------ 263 (288)
T TIGR00406 207 ----VS--DRLQVKLIYLEQP--IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLILSGILET------------ 263 (288)
T ss_pred ----CC--cceEEEecccccc--cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEEEeCcHh------------
Confidence 00 1233444442222 3578999998764 34567899999999999999997775422
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q psy3185 278 PSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~ 296 (298)
..+++.+.+++. |+++.
T Consensus 264 -~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 264 -QAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred -HHHHHHHHHHcc-Cceee
Confidence 157888888776 88765
No 64
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.41 E-value=1.7e-12 Score=119.14 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=81.4
Q ss_pred CCCeEEEecccCcHHHH----HHHHc-------CCeEEEeeCCHHHHHHHHHHHhhhhh---cccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAF----EIARR-------GYVCQGNEFSLFMLFASNFILNKCRE---KNVYKIYPWVQQTDNNIL 184 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~----ela~~-------G~~v~g~D~S~~Ml~~a~~~l~~~~~---~~~~~i~p~~~~~s~~~~ 184 (298)
++.+|||+|||||.-++ .+++. ++.|+|+|+|+.||..|+...-.... ....-+..|.....+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~--- 175 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED--- 175 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC---
Confidence 45799999999998544 44443 36799999999999988752100000 000000011110000
Q ss_pred ccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEecc
Q psy3185 185 THHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 185 ~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.+.+.+- + ..++.+..+|..+.+.+.++||+|++...+... ++....+++++++|||||+++ +|+
T Consensus 176 ------~~~v~~~----i--r~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~-lg~ 242 (264)
T smart00138 176 ------KYRVKPE----L--KERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLF-LGH 242 (264)
T ss_pred ------eEEEChH----H--hCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEE-EEC
Confidence 0111110 0 137889999999876667899999987665544 456789999999999999998 453
No 65
>PRK14968 putative methyltransferase; Provisional
Probab=99.41 E-value=7.9e-12 Score=107.45 Aligned_cols=127 Identities=21% Similarity=0.289 Sum_probs=89.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..++++|.+|+|+|.|+.|+..++..+... .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~----~----------------------------- 69 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN----N----------------------------- 69 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc----C-----------------------------
Confidence 3568999999999999999999999999999999998886633210 0
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc--cc-------------------cCcchHHHHHHHHHHhccCCeEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF--FI-------------------DCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f--fi-------------------dta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.. ..++.+..+|+.+.. .+++||+|++.. +. +....+..+++++.++|||||.+
T Consensus 70 ---~~-~~~~~~~~~d~~~~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~ 144 (188)
T PRK14968 70 ---IR-NNGVEVIRSDLFEPF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRI 144 (188)
T ss_pred ---CC-CcceEEEeccccccc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEE
Confidence 00 012556667766543 234799887642 11 11233567899999999999988
Q ss_pred EEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 258 INLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 258 In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+..-|- ....+++.+++.+.||++..
T Consensus 145 ~~~~~~-------------~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 145 LLLQSS-------------LTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred EEEEcc-------------cCCHHHHHHHHHHCCCeeee
Confidence 743221 11257899999999998764
No 66
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.41 E-value=3.6e-12 Score=112.70 Aligned_cols=92 Identities=16% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..|++. +.+++|+|+|+.|+..|+..+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------------------------------------ 87 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------------------------------------ 87 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------------------------------------
Confidence 568999999999999999987 678999999999999886510
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~I 258 (298)
.++.+..+|+.+ +..+++||+|++..++.+. .++..++++++++++ ++++
T Consensus 88 --------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 88 --------PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred --------CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC--cEEE
Confidence 123466777777 4567899999998776544 457889999999884 4554
No 67
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.40 E-value=6.4e-12 Score=100.43 Aligned_cols=98 Identities=19% Similarity=0.096 Sum_probs=73.2
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..++++ +..|+|+|.|+.|+..++...+...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------------------------- 67 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-------------------------------- 67 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC--------------------------------
Confidence 569999999999999999987 3579999999999998876432210
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+ .++.++.+|..... ...++||+|++.... ....++++.++++|||||.++.
T Consensus 68 ----~---~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 68 ----V---SNIVIVEGDAPEALEDSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ----C---CceEEEeccccccChhhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEE
Confidence 0 14556667655422 224689999886533 3456899999999999999873
No 68
>PRK04266 fibrillarin; Provisional
Probab=99.39 E-value=8.9e-12 Score=111.93 Aligned_cols=158 Identities=18% Similarity=0.097 Sum_probs=96.5
Q ss_pred HHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHH
Q psy3185 84 FVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 84 ~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l 161 (298)
-+|-|.. + |-..-..|+..+ +.++. .++.+|||+|||+|.++..+|+.. ..|+|+|.|+.|+.......
T Consensus 46 ~~~~~~~-~---r~~~~~~ll~~~-~~l~i----~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a 116 (226)
T PRK04266 46 EYREWNP-R---RSKLAAAILKGL-KNFPI----KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVA 116 (226)
T ss_pred EEEEECC-C---ccchHHHHHhhH-hhCCC----CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHh
Confidence 3577877 2 222222344434 23442 356799999999999999999873 57999999999998654421
Q ss_pred hhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCcc
Q psy3185 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCAN 238 (298)
Q Consensus 162 ~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta~ 238 (298)
.. ..|+....+|..+. ..-.++||+|++.. ....
T Consensus 117 ---~~--------------------------------------~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~--~~p~ 153 (226)
T PRK04266 117 ---EE--------------------------------------RKNIIPILADARKPERYAHVVEKVDVIYQDV--AQPN 153 (226)
T ss_pred ---hh--------------------------------------cCCcEEEECCCCCcchhhhccccCCEEEECC--CChh
Confidence 11 02455566666431 11135699998542 1111
Q ss_pred hHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 239 NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 239 n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.....+++++++|||||.++..-| |+..+... ...+.. ++..++++++||+++..
T Consensus 154 ~~~~~L~~~~r~LKpGG~lvI~v~--~~~~d~~~-~~~~~~-~~~~~~l~~aGF~~i~~ 208 (226)
T PRK04266 154 QAEIAIDNAEFFLKDGGYLLLAIK--ARSIDVTK-DPKEIF-KEEIRKLEEGGFEILEV 208 (226)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEe--cccccCcC-CHHHHH-HHHHHHHHHcCCeEEEE
Confidence 234568999999999999985322 22111101 111222 44559999999999764
No 69
>PRK06922 hypothetical protein; Provisional
Probab=99.38 E-value=2.8e-12 Score=129.12 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=81.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+|+. +..|+|+|+|+.|+..++.....
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~--------------------------------- 464 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN--------------------------------- 464 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh---------------------------------
Confidence 3679999999999999999976 56899999999999988753210
Q ss_pred CCCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccC-------------cchHHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDC-------------ANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidt-------------a~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
...++.+..||..+++ .++++||+|++++.++. ..++...+++++++|||||.++..
T Consensus 465 -------~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 465 -------EGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred -------cCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 0125667888887765 46789999998876653 246789999999999999999864
No 70
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.38 E-value=6.4e-12 Score=118.70 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=90.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||||||+|.++.+.+..|..|+|+|.|+.|+..++.-+...
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~---------------------------------- 227 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY---------------------------------- 227 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh----------------------------------
Confidence 4679999999999999999999999999999999999877633210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEec--cccc------Cc-chHHHHHHHHHHhccCCeEEEEeccccccccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFID------CA-NNIVSFIETIFNILKPGGIWINLGPLLYHYSN 269 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffid------ta-~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~ 269 (298)
.+ .++.+..+|+.+++..+++||+|++. |... .. ....++++.++++|||||.++..-|-
T Consensus 228 --g~---~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------ 296 (329)
T TIGR01177 228 --GI---EDFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------ 296 (329)
T ss_pred --CC---CCCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC------
Confidence 00 13668889998887667899999984 3221 11 12468999999999999988754331
Q ss_pred CCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 270 MLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
..++..+++.+|| ++.
T Consensus 297 ----------~~~~~~~~~~~g~-i~~ 312 (329)
T TIGR01177 297 ----------RIDLESLAEDAFR-VVK 312 (329)
T ss_pred ----------CCCHHHHHhhcCc-chh
Confidence 1245577888999 653
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=99.37 E-value=2.2e-11 Score=108.74 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=74.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++..+++.|. +|+|+|.|+.|+..++......
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------------------------- 82 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA--------------------------------- 82 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh---------------------------------
Confidence 357999999999999999999887 8999999999999887532110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccCc-------------------chHHHHHHHHHHhccCCeE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDCA-------------------NNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidta-------------------~n~~~yl~~I~~~LkpGG~ 256 (298)
..++.+..+|+.+.. .+++||+|++. |+-... ..+..+++.+.++|||||.
T Consensus 83 -------~~~~~~~~~d~~~~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 83 -------GVDVDVRRGDWARAV-EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred -------CCeeEEEECchhhhc-cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 013566778876643 45789999886 322211 1245678899999999999
Q ss_pred EEE
Q psy3185 257 WIN 259 (298)
Q Consensus 257 ~In 259 (298)
++.
T Consensus 155 l~~ 157 (223)
T PRK14967 155 LLL 157 (223)
T ss_pred EEE
Confidence 874
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.36 E-value=3.2e-11 Score=104.67 Aligned_cols=120 Identities=16% Similarity=0.088 Sum_probs=87.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..+++++ ..|+|+|.|+.|+..++....+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~-------------------------------- 78 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF-------------------------------- 78 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh--------------------------------
Confidence 46799999999999999999874 58999999999999887532210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCcc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSI 276 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~ 276 (298)
.+ .++.+..+|.... .+++||+|++.... .++..+++.++++|||||+++...+ .
T Consensus 79 ----~~---~~i~~~~~d~~~~--~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~-------------~ 133 (187)
T PRK08287 79 ----GC---GNIDIIPGEAPIE--LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFI-------------L 133 (187)
T ss_pred ----CC---CCeEEEecCchhh--cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEe-------------c
Confidence 00 2466677776432 24689999876533 3466789999999999999874211 1
Q ss_pred CCCHHHHHHHHHhCCCEEE
Q psy3185 277 EPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 277 ~ls~eEl~~~~~~~GF~i~ 295 (298)
.-+.+++..++++.||+..
T Consensus 134 ~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 134 LENLHSALAHLEKCGVSEL 152 (187)
T ss_pred HhhHHHHHHHHHHCCCCcc
Confidence 1236788999999999643
No 73
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.35 E-value=7.1e-12 Score=99.78 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=79.1
Q ss_pred CeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
.+|||||||+|.++..+++.| ..++|+|+++..+..++..+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~----------------------------------- 46 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN----------------------------------- 46 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC-----------------------------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc-----------------------------------
Confidence 589999999999999999999 88999999999999888743210
Q ss_pred CCCCCCCCeeEEeccccccc--cCCCceeEEEec-ccccCc-------chHHHHHHHHHHhccCCeEEEEec
Q psy3185 200 SDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATC-FFIDCA-------NNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~-ffidta-------~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
....++.+..+|+.++. ..+++||+|+++ -+..+. .....+++.+.++|||||.++-+-
T Consensus 47 ---~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 47 ---GLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ---TTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---cCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 00146889999998886 467999999986 233221 124578999999999999987543
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.35 E-value=3.1e-11 Score=108.66 Aligned_cols=123 Identities=19% Similarity=0.260 Sum_probs=89.0
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++. +..|+|+|.|+.|+..++......
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------------------------------- 134 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL--------------------------------- 134 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 468999999999999999987 568999999999999887633210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecc-ccc------Cc-------------------chHHHHHHHHHHhc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FID------CA-------------------NNIVSFIETIFNIL 251 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fid------ta-------------------~n~~~yl~~I~~~L 251 (298)
.+ .++.+..+|+.+.. ++++||+|++.. ++. .. ......++.+.++|
T Consensus 135 ---~~---~~~~~~~~d~~~~~-~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L 207 (251)
T TIGR03534 135 ---GL---DNVTFLQSDWFEPL-PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL 207 (251)
T ss_pred ---CC---CeEEEEECchhccC-cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 00 25778889987743 468999998842 111 00 11236789999999
Q ss_pred cCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 252 KPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 252 kpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
||||.++.. .++ -..+++.+++++.||+.+.
T Consensus 208 ~~gG~~~~~----~~~----------~~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 208 KPGGWLLLE----IGY----------DQGEAVRALFEAAGFADVE 238 (251)
T ss_pred ccCCEEEEE----ECc----------cHHHHHHHHHHhCCCCceE
Confidence 999988731 111 1257899999999997653
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.34 E-value=1.6e-11 Score=107.51 Aligned_cols=101 Identities=22% Similarity=0.232 Sum_probs=76.6
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|++ +..|+|+|.|..|+..++..+.+.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~--------------------------------- 63 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL--------------------------------- 63 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh---------------------------------
Confidence 569999999999999999988 467999999999999887632210
Q ss_pred CCCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCcch--------HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCANN--------IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta~n--------~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.++.+|+.++. .+++++|.|+..|--.+.+. ...+++.++++|||||.++.
T Consensus 64 ---~l---~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 64 ---GL---KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred ---CC---CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 01 37889999987653 34568999987763221111 14789999999999999874
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=2.2e-11 Score=107.58 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=79.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..+.+.+.. .++.+|||+|||+|.++..+++. +..|+|+|.|+.|+..++..+.+.
T Consensus 60 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------------- 120 (205)
T PRK13944 60 MVAMMCELIEP----RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--------------- 120 (205)
T ss_pred HHHHHHHhcCC----CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---------------
Confidence 34444444432 24679999999999999999875 358999999999999887643220
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++++..+|+.+.....++||+|++...+.+. .+++.+.|||||.++.
T Consensus 121 -----------------------~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~------~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 121 -----------------------GYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTI------PSALVRQLKDGGVLVI 171 (205)
T ss_pred -----------------------CCCCcEEEEECCcccCCccCCCccEEEEccCcchh------hHHHHHhcCcCcEEEE
Confidence 00125788999998765556799999887655433 3578899999999863
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.33 E-value=2.9e-11 Score=106.12 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=89.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++.++|+. | .+|+|+|.|+.|+..++......
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~------------------------------- 88 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF------------------------------- 88 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence 5679999999999999999875 3 57999999999999887633210
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNED 274 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~ 274 (298)
.+ ..++.++.+|+.++.. ..+.||+|+... ...++..+++.+.++|||||.++...+..
T Consensus 89 -----g~--~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---------- 148 (198)
T PRK00377 89 -----GV--LNNIVLIKGEAPEILFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL---------- 148 (198)
T ss_pred -----CC--CCCeEEEEechhhhHhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH----------
Confidence 00 1356778888876533 246899988754 23567789999999999999987322111
Q ss_pred ccCCCHHHHHHHHHhCCCEEE
Q psy3185 275 SIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~~GF~i~ 295 (298)
-+.+++...+++.||...
T Consensus 149 ---~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 149 ---ETVNNALSALENIGFNLE 166 (198)
T ss_pred ---HHHHHHHHHHHHcCCCeE
Confidence 125788888888998543
No 78
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.33 E-value=6.3e-11 Score=110.61 Aligned_cols=136 Identities=14% Similarity=0.100 Sum_probs=95.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+|||+|||+|.++..++++. .+|+++|. +.|+..++..... .
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~---~----------------------------- 195 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAE---K----------------------------- 195 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHh---C-----------------------------
Confidence 45799999999999999999984 67999998 6899887653221 0
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEEEeccccccccCCC---
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWINLGPLLYHYSNML--- 271 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~--- 271 (298)
.-..+++++.|||.+... ..+|+|+.+.+++.. +.....++++++.|||||.++....+.-. ...+
T Consensus 196 ------gl~~rv~~~~~d~~~~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~-~~~~~~~ 266 (306)
T TIGR02716 196 ------GVADRMRGIAVDIYKESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD-PENPNFD 266 (306)
T ss_pred ------CccceEEEEecCccCCCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC-CCCchhh
Confidence 011368899999876432 237998888777643 33467999999999999999765332111 0000
Q ss_pred ---------C-CCcc--CCCHHHHHHHHHhCCCEEEE
Q psy3185 272 ---------N-EDSI--EPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ---------~-~~~~--~ls~eEl~~~~~~~GF~i~~ 296 (298)
. ..+. ..+.+|+.++++++||+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 267 YLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred HHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 0 0011 12379999999999998654
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=2.8e-11 Score=107.52 Aligned_cols=108 Identities=18% Similarity=0.084 Sum_probs=78.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe---EEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV---CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~---v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..+.+.+.. .++.+|||+|||+|.++..||+.+.. |+|+|.|+.|+..++..+...
T Consensus 65 ~~~~~~~~l~~----~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--------------- 125 (215)
T TIGR00080 65 MVAMMTELLEL----KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--------------- 125 (215)
T ss_pred HHHHHHHHhCC----CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC---------------
Confidence 34444444432 34679999999999999999998543 999999999999988744320
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. -.++.++.+|..+.....+.||+|+...... .+.+.+.+.|||||++|.
T Consensus 126 ---------------------g---~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv~ 175 (215)
T TIGR00080 126 ---------------------G---LDNVIVIVGDGTQGWEPLAPYDRIYVTAAGP------KIPEALIDQLKEGGILVM 175 (215)
T ss_pred ---------------------C---CCCeEEEECCcccCCcccCCCCEEEEcCCcc------cccHHHHHhcCcCcEEEE
Confidence 0 1367888999877655557899988665332 234568889999999863
No 80
>KOG4300|consensus
Probab=99.30 E-value=3e-11 Score=105.47 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=87.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHH-HcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIA-RRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela-~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
|.+.+...... ..+..||++|||||+.--..- ..+..||++|.++.|-..+..- ..+.
T Consensus 64 lFs~i~~~~gk----~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks---~~E~-------------- 122 (252)
T KOG4300|consen 64 LFSGIYYFLGK----SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKS---AAEK-------------- 122 (252)
T ss_pred HHhhhHHHhcc----cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHH---Hhhc--------------
Confidence 45555544432 245678999999999766554 3588999999999999877652 1110
Q ss_pred cccccccccccccCCCCCCCCCCCCCee-EEeccccccc-cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFS-MAAGDFLQVY-VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~-~~~gDf~~~~-~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++. ++.++-.+++ .++++||+||..|.|-..++..+.|+++.++|||||.+|-
T Consensus 123 --------------------k~--~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 123 --------------------KP--LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred --------------------cC--cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 01 2454 7888887776 3689999999999999999999999999999999999884
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=4.8e-11 Score=106.06 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=80.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.+...+.+.+.. .++.+|||+|||+|.++..+++. | ..|+|+|.++.|+..++..+...
T Consensus 63 ~~~~~~~~~l~~----~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~-------------- 124 (212)
T PRK13942 63 HMVAIMCELLDL----KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL-------------- 124 (212)
T ss_pred HHHHHHHHHcCC----CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------------
Confidence 344555555432 24679999999999999999987 3 58999999999999988744320
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
. ..++.++.||+.+.+.+.+.||+|++.....+ +.+.+.+.|||||.++
T Consensus 125 ------------------------g-~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~------~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 125 ------------------------G-YDNVEVIVGDGTLGYEENAPYDRIYVTAAGPD------IPKPLIEQLKDGGIMV 173 (212)
T ss_pred ------------------------C-CCCeEEEECCcccCCCcCCCcCEEEECCCccc------chHHHHHhhCCCcEEE
Confidence 0 13688999998876666689999876554432 2356778999999986
Q ss_pred E
Q psy3185 259 N 259 (298)
Q Consensus 259 n 259 (298)
.
T Consensus 174 i 174 (212)
T PRK13942 174 I 174 (212)
T ss_pred E
Confidence 4
No 82
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.29 E-value=1.6e-11 Score=106.98 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=87.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.-.++|+||||.|.++..||.+.-.++++|.|+..+..|+..+..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~----------------------------------- 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG----------------------------------- 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-----------------------------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-----------------------------------
Confidence 346899999999999999999988899999999999999874321
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEe---cccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCC-CC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT---CFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLN-ED 274 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t---~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~-~~ 274 (298)
..++++.++|+.+.. ++++||.||. .||++..+++..+++.+...|+|||.+|... +.+... .=
T Consensus 88 ------~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~-----~rd~~c~~w 155 (201)
T PF05401_consen 88 ------LPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH-----ARDANCRRW 155 (201)
T ss_dssp -------SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE-----E-HHHHHHT
T ss_pred ------CCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE-----ecCCccccc
Confidence 137888999987765 5789998765 3788888889999999999999999998421 111100 01
Q ss_pred ccCCCHHHHHHHHHh
Q psy3185 275 SIEPSYEVVKQVIQG 289 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~ 289 (298)
.+....+.+.+++.+
T Consensus 156 gh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 156 GHAAGAETVLEMLQE 170 (201)
T ss_dssp T-S--HHHHHHHHHH
T ss_pred CcccchHHHHHHHHH
Confidence 133467888888765
No 83
>PHA03411 putative methyltransferase; Provisional
Probab=99.29 E-value=4.9e-11 Score=109.38 Aligned_cols=124 Identities=16% Similarity=0.064 Sum_probs=90.3
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++..++++ +.+|+|+|+|+.|+..++..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------------------------------------ 108 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------------------------------------ 108 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------------------------------------
Confidence 469999999999999998876 568999999999998876510
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEe--cccccCcc---h---------------HHHHHHHHHHhccCCeEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT--CFFIDCAN---N---------------IVSFIETIFNILKPGGIW 257 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t--~ffidta~---n---------------~~~yl~~I~~~LkpGG~~ 257 (298)
.++.+..+|+.++. ...+||+|++ .|+..... + +...+.....+|+|+|..
T Consensus 109 --------~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~ 179 (279)
T PHA03411 109 --------PEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSA 179 (279)
T ss_pred --------cCCEEEECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceE
Confidence 14567888888765 3468999998 46542221 1 235667777899999965
Q ss_pred EEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 258 INLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 258 In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+-+ |..... .+..|+.+|.+++++..||...
T Consensus 180 ~~~----yss~~~---y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 180 GFA----YSGRPY---YDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred EEE----Eecccc---ccccCCHHHHHHHHHhcCcEec
Confidence 432 332211 2345889999999999999863
No 84
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.28 E-value=9.9e-11 Score=108.17 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=113.0
Q ss_pred cchHHHHHHHHHHH---------------hhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHH
Q psy3185 72 TDLEKVQTTLKQFV---------------RDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFE 136 (298)
Q Consensus 72 ~~~~~v~~~l~~~~---------------RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~e 136 (298)
.+..++.++|+++. -+|-+.-+=+ .|..++++ -.+.+|||+|||.|..++.
T Consensus 67 ~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~----------rl~p~l~~----L~gk~VLDIGC~nGY~~fr 132 (315)
T PF08003_consen 67 EQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWD----------RLLPHLPD----LKGKRVLDIGCNNGYYSFR 132 (315)
T ss_pred HHHHHHHHHHHhhCCcccCCcccCCEeecccccccchHH----------HHHhhhCC----cCCCEEEEecCCCcHHHHH
Confidence 44566777777662 3454443333 34555542 3578999999999999999
Q ss_pred HHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccc
Q psy3185 137 IARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDF 215 (298)
Q Consensus 137 la~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf 215 (298)
++.+|.. |.|+|.|..-+...+++-.-... + ..+.+.---.
T Consensus 133 M~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----------------------------~---------~~~~~lplgv 174 (315)
T PF08003_consen 133 MLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----------------------------D---------PPVFELPLGV 174 (315)
T ss_pred HhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----------------------------C---------ccEEEcCcch
Confidence 9999986 99999999877665554211000 0 0111110112
Q ss_pred cccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE-----eccc---cc---cccCCCCCCccCCCHHHHH
Q psy3185 216 LQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN-----LGPL---LY---HYSNMLNEDSIEPSYEVVK 284 (298)
Q Consensus 216 ~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In-----~gPl---~y---~~~~~~~~~~~~ls~eEl~ 284 (298)
.+++. .++||+|++.=.|=+..++...|+.++..|+|||.+|- -|+- +. .++.++ .-..-+|..-|.
T Consensus 175 E~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~-nv~FiPs~~~L~ 252 (315)
T PF08003_consen 175 EDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMR-NVWFIPSVAALK 252 (315)
T ss_pred hhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCC-ceEEeCCHHHHH
Confidence 23333 68999999998888889999999999999999999972 1221 11 011111 123347999999
Q ss_pred HHHHhCCCEEEE
Q psy3185 285 QVIQGLGFVYEV 296 (298)
Q Consensus 285 ~~~~~~GF~i~~ 296 (298)
.+++++||+-++
T Consensus 253 ~wl~r~gF~~v~ 264 (315)
T PF08003_consen 253 NWLERAGFKDVR 264 (315)
T ss_pred HHHHHcCCceEE
Confidence 999999998764
No 85
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=1.7e-10 Score=100.32 Aligned_cols=127 Identities=19% Similarity=0.217 Sum_probs=95.2
Q ss_pred CCCeEEEecccCcHHHHHHHH-cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR-RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||.|.|...|.+ ++..++|+|+++..+..+-. +
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~---r---------------------------------- 55 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA---R---------------------------------- 55 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH---c----------------------------------
Confidence 478999999999999999987 68999999999998776543 1
Q ss_pred CCCCCCCCCCeeEEeccccccc--cCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE----Eec----------
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI----NLG---------- 261 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I----n~g---------- 261 (298)
.++++++|..+-. +++++||.|+.+-.|.+..++...|+++.|+-| ..| |+|
T Consensus 56 ---------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr---~~IVsFPNFg~W~~R~~l~~ 123 (193)
T PF07021_consen 56 ---------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR---RAIVSFPNFGHWRNRLQLLL 123 (193)
T ss_pred ---------CCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC---eEEEEecChHHHHHHHHHHh
Confidence 3446666665432 368999999999889988999999998877644 333 222
Q ss_pred ----c----ccccccCCCCCCcc-CCCHHHHHHHHHhCCCEEEEe
Q psy3185 262 ----P----LLYHYSNMLNEDSI-EPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 262 ----P----l~y~~~~~~~~~~~-~ls~eEl~~~~~~~GF~i~~~ 297 (298)
| |-|.|.+. |.+ .+|..++.++.++.|++|++.
T Consensus 124 ~GrmPvt~~lPy~WYdT---PNih~~Ti~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 124 RGRMPVTKALPYEWYDT---PNIHLCTIKDFEDLCRELGIRIEER 165 (193)
T ss_pred cCCCCCCCCCCCcccCC---CCcccccHHHHHHHHHHCCCEEEEE
Confidence 1 12333332 334 479999999999999999864
No 86
>PTZ00146 fibrillarin; Provisional
Probab=99.24 E-value=7.5e-11 Score=109.13 Aligned_cols=152 Identities=18% Similarity=0.070 Sum_probs=93.5
Q ss_pred HhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHH
Q psy3185 85 VRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 85 ~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l 161 (298)
+|.|++-...= -..|+.-|... +. .++.+|||+|||+|..+..+|+. | -.|+|+|+|+.|+.....+.
T Consensus 107 yR~w~p~rSKl----aa~i~~g~~~l-~I----kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a 177 (293)
T PTZ00146 107 YRVWNPFRSKL----AAAIIGGVANI-PI----KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA 177 (293)
T ss_pred eeeeCCcccHH----HHHHHCCccee-cc----CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh
Confidence 89999854222 11244444433 21 34679999999999999999987 3 46999999998763222211
Q ss_pred hhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc---ccCCCceeEEEecccccCcc
Q psy3185 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV---YVHPNKWDCVATCFFIDCAN 238 (298)
Q Consensus 162 ~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~---~~~~~~fD~V~t~ffidta~ 238 (298)
.. ..|+..+.+|+..- ....+++|+|++... ...
T Consensus 178 ---k~--------------------------------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pd 214 (293)
T PTZ00146 178 ---KK--------------------------------------RPNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPD 214 (293)
T ss_pred ---hh--------------------------------------cCCCEEEECCccChhhhhcccCCCCEEEEeCC--Ccc
Confidence 00 02455566666431 112357999977653 222
Q ss_pred hHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHH----HHHHHhCCCEEEE
Q psy3185 239 NIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVV----KQVIQGLGFVYEV 296 (298)
Q Consensus 239 n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl----~~~~~~~GF~i~~ 296 (298)
+...++.+++++|||||+++.. +.... ....++++++ .+++++.||+++.
T Consensus 215 q~~il~~na~r~LKpGG~~vI~----ika~~----id~g~~pe~~f~~ev~~L~~~GF~~~e 268 (293)
T PTZ00146 215 QARIVALNAQYFLKNGGHFIIS----IKANC----IDSTAKPEVVFASEVQKLKKEGLKPKE 268 (293)
T ss_pred hHHHHHHHHHHhccCCCEEEEE----Eeccc----cccCCCHHHHHHHHHHHHHHcCCceEE
Confidence 3345677899999999999852 33221 1222334443 3888999999765
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.23 E-value=1.8e-10 Score=101.97 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=78.5
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+...+...+.. .++.+|||+|||+|.++..+++.+..|+++|.|+.|+..++..+.+.
T Consensus 66 ~~~~l~~~l~~----~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~------------------ 123 (212)
T PRK00312 66 MVARMTELLEL----KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL------------------ 123 (212)
T ss_pred HHHHHHHhcCC----CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC------------------
Confidence 33444444432 24679999999999999999988778999999999999887644320
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. -.++++..+|+.+.....++||+|+....+. .+.+.+.+.|||||.++.
T Consensus 124 ------------------~---~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~------~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 124 ------------------G---LHNVSVRHGDGWKGWPAYAPFDRILVTAAAP------EIPRALLEQLKEGGILVA 173 (212)
T ss_pred ------------------C---CCceEEEECCcccCCCcCCCcCEEEEccCch------hhhHHHHHhcCCCcEEEE
Confidence 0 0257788888766544457899988765332 234667899999999863
No 88
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.23 E-value=3.4e-10 Score=97.04 Aligned_cols=110 Identities=19% Similarity=0.270 Sum_probs=80.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe--EEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV--CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~--v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
-+++.+... ...+|||+|||+|-++..+++++.. |+++|.|+.++..++.-... +
T Consensus 22 lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~----n----------- 78 (170)
T PF05175_consen 22 LLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER----N----------- 78 (170)
T ss_dssp HHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH----T-----------
T ss_pred HHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh----c-----------
Confidence 455666654 2569999999999999999999765 99999999999988762211 0
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc-----hHHHHHHHHHHhccCC
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN-----NIVSFIETIFNILKPG 254 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~-----n~~~yl~~I~~~LkpG 254 (298)
.+ .++.+..+|+.+... +++||+|++.-=++... -+.++++...+.||||
T Consensus 79 ---------------------~~---~~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 79 ---------------------GL---ENVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp ---------------------TC---TTEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred ---------------------Cc---ccccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 00 137788888876543 68999999974333222 3567899999999999
Q ss_pred eEEEE
Q psy3185 255 GIWIN 259 (298)
Q Consensus 255 G~~In 259 (298)
|.++-
T Consensus 134 G~l~l 138 (170)
T PF05175_consen 134 GRLFL 138 (170)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98853
No 89
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.22 E-value=1.5e-10 Score=87.37 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=78.7
Q ss_pred eEEEecccCcHHHHHHHH-cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIAR-RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
+|||+|||.|.++..+++ .+..++++|.|+.++..++.....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------- 43 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------------------------------------- 43 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-------------------------------------
Confidence 589999999999999998 567899999999998877641110
Q ss_pred CCCCCCCeeEEecccccccc-CCCceeEEEecccccC-cchHHHHHHHHHHhccCCeEEEE
Q psy3185 201 DYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC-ANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt-a~n~~~yl~~I~~~LkpGG~~In 259 (298)
....++.+..+|+.+... ..++||+|++...++. ......+++.+.+.|||||.++-
T Consensus 44 --~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 44 --LLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred --ccccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 001356677788777653 4578999999988877 77888999999999999999874
No 90
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=3.9e-11 Score=102.03 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=68.3
Q ss_pred CeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe--cc----c---c--ccccCC-----
Q psy3185 207 DFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL--GP----L---L--YHYSNM----- 270 (298)
Q Consensus 207 ~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~--gP----l---~--y~~~~~----- 270 (298)
+++++.||+.+++.++++||+|++.|.+++.++....+++++++|||||.++.. ++ + . |.....
T Consensus 27 ~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (160)
T PLN02232 27 CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVA 106 (160)
T ss_pred ceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhh
Confidence 688999999999888889999999999999999999999999999999999743 11 0 0 000000
Q ss_pred -----CCC-----Cc--cCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 -----LNE-----DS--IEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 -----~~~-----~~--~~ls~eEl~~~~~~~GF~i~~ 296 (298)
... .+ ..++.+|+.++++++||+.++
T Consensus 107 ~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~ 144 (160)
T PLN02232 107 TVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSAC 144 (160)
T ss_pred HHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcce
Confidence 000 11 236899999999999998653
No 91
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.19 E-value=6.6e-11 Score=104.05 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=93.0
Q ss_pred ChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccc
Q psy3185 92 GSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNV 169 (298)
Q Consensus 92 g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~ 169 (298)
.+.||.. |..+ |..++|. ....+|.|+|||+|..+..|+++ +..++|+|-|+.||..|+..
T Consensus 11 F~~eRtR---Pa~d-Lla~Vp~----~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------- 73 (257)
T COG4106 11 FEDERTR---PARD-LLARVPL----ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------- 73 (257)
T ss_pred HHHhccC---cHHH-HHhhCCc----cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh---------
Confidence 3445553 3333 4455664 34679999999999999999998 67899999999999988652
Q ss_pred cccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHH
Q psy3185 170 YKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFN 249 (298)
Q Consensus 170 ~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~ 249 (298)
. .+.++..||..++. ++...|+++++-.+++.++-.+.+..+-.
T Consensus 74 ------------------------l-----------p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~ 117 (257)
T COG4106 74 ------------------------L-----------PDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVS 117 (257)
T ss_pred ------------------------C-----------CCCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHH
Confidence 1 25678889988885 46789999999999999999999999999
Q ss_pred hccCCeEEEE
Q psy3185 250 ILKPGGIWIN 259 (298)
Q Consensus 250 ~LkpGG~~In 259 (298)
.|.|||++..
T Consensus 118 ~L~Pgg~LAV 127 (257)
T COG4106 118 QLAPGGVLAV 127 (257)
T ss_pred hhCCCceEEE
Confidence 9999999863
No 92
>KOG2361|consensus
Probab=99.18 E-value=1.6e-10 Score=103.12 Aligned_cols=180 Identities=17% Similarity=0.215 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhhhccCChH-------HHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc----CCe
Q psy3185 75 EKVQTTLKQFVRDWSEEGSE-------ERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR----GYV 143 (298)
Q Consensus 75 ~~v~~~l~~~~RdWs~~g~~-------ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~----G~~ 143 (298)
.++.-..++-.+-|+.-+.. .|. ++..+.-++++... ....+||++|||.|...+.|.+- +..
T Consensus 26 ~~~~~y~~~~~k~wD~fy~~~~~rFfkdR~----wL~~Efpel~~~~~--~~~~~ilEvGCGvGNtvfPll~~~~n~~l~ 99 (264)
T KOG2361|consen 26 EEVVKYEREASKYWDTFYKIHENRFFKDRN----WLLREFPELLPVDE--KSAETILEVGCGVGNTVFPLLKTSPNNRLK 99 (264)
T ss_pred hhhhhhhcchhhhhhhhhhhccccccchhH----HHHHhhHHhhCccc--cChhhheeeccCCCcccchhhhcCCCCCeE
Confidence 34444555666667753321 343 46666666666432 22338999999999999999875 477
Q ss_pred EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCC
Q psy3185 144 CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223 (298)
Q Consensus 144 v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~ 223 (298)
|.+.|+|+..+...+. + .+...-...+|+.. +.. +-...+.+.+
T Consensus 100 v~acDfsp~Ai~~vk~---~-~~~~e~~~~afv~D------------------lt~--------------~~~~~~~~~~ 143 (264)
T KOG2361|consen 100 VYACDFSPRAIELVKK---S-SGYDESRVEAFVWD------------------LTS--------------PSLKEPPEEG 143 (264)
T ss_pred EEEcCCChHHHHHHHh---c-cccchhhhccccee------------------ccc--------------hhccCCCCcC
Confidence 9999999998876554 1 11112222333331 110 0012224579
Q ss_pred ceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEe--c--c---cccccc---------CCCCCCccCCCHHHHHH
Q psy3185 224 KWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINL--G--P---LLYHYS---------NMLNEDSIEPSYEVVKQ 285 (298)
Q Consensus 224 ~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~--g--P---l~y~~~---------~~~~~~~~~ls~eEl~~ 285 (298)
++|+|+..|.|- ..+.+...|+.++++|||||.++.- | . +.++-. -..+.....++.+||..
T Consensus 144 svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~ 223 (264)
T KOG2361|consen 144 SVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDE 223 (264)
T ss_pred ccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHH
Confidence 999999888775 4456788999999999999998742 1 1 111100 00123556799999999
Q ss_pred HHHhCCCEEEE
Q psy3185 286 VIQGLGFVYEV 296 (298)
Q Consensus 286 ~~~~~GF~i~~ 296 (298)
+++++||..+.
T Consensus 224 ~f~~agf~~~~ 234 (264)
T KOG2361|consen 224 LFTKAGFEEVQ 234 (264)
T ss_pred HHHhcccchhc
Confidence 99999998654
No 93
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=9.6e-10 Score=100.55 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=87.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++..++... ..|+|+|.|+.|+..++.....
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--------------------------------- 154 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--------------------------------- 154 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 45799999999999999999885 7899999999999988763210
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecc-ccc-------------------------CcchHHHHHHHHHHh
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FID-------------------------CANNIVSFIETIFNI 250 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fid-------------------------ta~n~~~yl~~I~~~ 250 (298)
....++.+..+|+.+.. .+++||+|++.. ++. .......+++.+.++
T Consensus 155 ------~~~~~i~~~~~d~~~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 155 ------GLGARVEFLQGDWFEPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred ------CCCCcEEEEEccccCcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 00136778888875543 257899998742 111 112235678888899
Q ss_pred ccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 251 LKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 251 LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
|||||+++.- .++. ..+++..++.+.||.-+
T Consensus 228 Lk~gG~l~~e----~g~~----------~~~~~~~~l~~~gf~~v 258 (275)
T PRK09328 228 LKPGGWLLLE----IGYD----------QGEAVRALLAAAGFADV 258 (275)
T ss_pred cccCCEEEEE----ECch----------HHHHHHHHHHhCCCcee
Confidence 9999988731 1111 14678999999999643
No 94
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.17 E-value=5.4e-10 Score=97.73 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+...+...++. .++.+|||+|||+|.++.++|+. +..|+|+|.|+.|+..++..++..
T Consensus 28 v~~~l~~~l~~----~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~---------------- 87 (196)
T PRK07402 28 VRLLLISQLRL----EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF---------------- 87 (196)
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------
Confidence 33444555542 24679999999999999999875 478999999999999887633210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ .++.+..+|+.+.+. ....+|.|+. +...++..+++.++++|||||.++.
T Consensus 88 --------------------~~---~~v~~~~~d~~~~~~~~~~~~d~v~~----~~~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 88 --------------------GV---KNVEVIEGSAPECLAQLAPAPDRVCI----EGGRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred --------------------CC---CCeEEEECchHHHHhhCCCCCCEEEE----ECCcCHHHHHHHHHHhcCCCeEEEE
Confidence 00 256677777654321 1234565532 3345677899999999999999885
Q ss_pred ec
Q psy3185 260 LG 261 (298)
Q Consensus 260 ~g 261 (298)
..
T Consensus 141 ~~ 142 (196)
T PRK07402 141 TA 142 (196)
T ss_pred Ee
Confidence 43
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.17 E-value=5.1e-10 Score=107.45 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=98.7
Q ss_pred cchHHHHHHHHHHHhhhccCChHHH--------hhhhHHHHH--HHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-
Q psy3185 72 TDLEKVQTTLKQFVRDWSEEGSEER--------KTCYEPIIS--EILARFPPETINPKDVNILVPGAGLGRLAFEIARR- 140 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~g~~ER--------~~~~~~i~~--~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~- 140 (298)
+....++.+|..++..|..+--... ...-.++++ .+.+.+.. ..+..+||+|||+|+.+..+|++
T Consensus 69 ~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~p~vLEIGcGsG~~ll~lA~~~ 144 (390)
T PRK14121 69 SKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISK----NQEKILIEIGFGSGRHLLYQAKNN 144 (390)
T ss_pred cchHHHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcC----CCCCeEEEEcCcccHHHHHHHHhC
Confidence 4567889999999988863211111 001112332 33333331 24569999999999999999998
Q ss_pred -CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccc-
Q psy3185 141 -GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV- 218 (298)
Q Consensus 141 -G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~- 218 (298)
+..++|+|++..|+..+...... . . -.|+.++.+|...+
T Consensus 145 P~~~~iGIEI~~~~i~~a~~ka~~---~---------------------------------g---L~NV~~i~~DA~~ll 185 (390)
T PRK14121 145 PNKLFIGIEIHTPSIEQVLKQIEL---L---------------------------------N---LKNLLIINYDARLLL 185 (390)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH---c---------------------------------C---CCcEEEEECCHHHhh
Confidence 46799999999999877652211 0 0 13788999998654
Q ss_pred -ccCCCceeEEEecccccCcch------HHHHHHHHHHhccCCeEEEE
Q psy3185 219 -YVHPNKWDCVATCFFIDCANN------IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 219 -~~~~~~fD~V~t~ffidta~n------~~~yl~~I~~~LkpGG~~In 259 (298)
..+++++|.|++.|-..+... ...+++.++++|||||.+.-
T Consensus 186 ~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 186 ELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred hhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 245789999988764332211 15799999999999999864
No 96
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.16 E-value=4.6e-10 Score=107.84 Aligned_cols=115 Identities=15% Similarity=0.156 Sum_probs=80.6
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
..|.+++|.. ...+|||+|||+|.++..+++++ .+|+++|.|+.|+..++.-+.. +.
T Consensus 218 rllL~~lp~~----~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~----n~------------- 276 (378)
T PRK15001 218 RFFMQHLPEN----LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----NM------------- 276 (378)
T ss_pred HHHHHhCCcc----cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC-------------
Confidence 3456666632 24699999999999999999984 6899999999999998762211 00
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--cccc---CcchHHHHHHHHHHhccCCeEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFID---CANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffid---ta~n~~~yl~~I~~~LkpGG~~ 257 (298)
+ ....++.+..+|..+.. ++++||+|+++ |+.. +.....+.++.++++|||||.+
T Consensus 277 ------------~-------~~~~~v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L 336 (378)
T PRK15001 277 ------------P-------EALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 336 (378)
T ss_pred ------------c-------ccCceEEEEEccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEE
Confidence 0 00125677788875432 34689999996 4322 1122457899999999999988
Q ss_pred EEe
Q psy3185 258 INL 260 (298)
Q Consensus 258 In~ 260 (298)
+.+
T Consensus 337 ~iV 339 (378)
T PRK15001 337 YIV 339 (378)
T ss_pred EEE
Confidence 755
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.16 E-value=3.6e-10 Score=107.41 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=74.3
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+|||+|||+|.++..+++++ ..|+++|.|..|+..++.-+.. +.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----n~---------------------------- 244 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----NG---------------------------- 244 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC----------------------------
Confidence 4589999999999999999985 4799999999999998863321 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc----C-cchHHHHHHHHHHhccCCeEEEEec
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID----C-ANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid----t-a~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
....+..+|.... .+++||+|++..-++ + ......+++.+.+.|||||.++.+.
T Consensus 245 --------l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 245 --------LEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred --------CCCEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 0123455665442 257899999975333 2 3446789999999999999987544
No 98
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.16 E-value=6.9e-10 Score=102.93 Aligned_cols=122 Identities=14% Similarity=0.209 Sum_probs=87.1
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|++ +..|+|+|+|+.|+..|+.-....
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--------------------------------- 168 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--------------------------------- 168 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 468999999999999999987 468999999999999988632210
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec--cc----ccC-------------------cchHHHHHHHHHHhcc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FF----IDC-------------------ANNIVSFIETIFNILK 252 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ff----idt-------------------a~n~~~yl~~I~~~Lk 252 (298)
.+ ..++.+..+|+.+.. ++++||+|++. |. +++ ..-....++.+.++||
T Consensus 169 ---~~--~~~i~~~~~D~~~~~-~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~ 242 (284)
T TIGR03533 169 ---GL--EDRVTLIQSDLFAAL-PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN 242 (284)
T ss_pred ---CC--CCcEEEEECchhhcc-CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 00 136788889976543 34689999985 11 000 0123457888889999
Q ss_pred CCeEEEE-eccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 253 PGGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 253 pGG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
|||.++. +| .+.+++.+++.+.||....
T Consensus 243 ~gG~l~~e~g----------------~~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 243 ENGVLVVEVG----------------NSMEALEEAYPDVPFTWLE 271 (284)
T ss_pred CCCEEEEEEC----------------cCHHHHHHHHHhCCCceee
Confidence 9998863 22 1356888888888887643
No 99
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.15 E-value=7.2e-10 Score=103.18 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=90.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
-.++.|.++.. ++.+|||+|||+|-|+..-++.|. .|+|+|+++..+..|+.-.. .|..
T Consensus 150 lcl~~l~~~~~------~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~----~N~~---------- 209 (295)
T PF06325_consen 150 LCLELLEKYVK------PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAE----LNGV---------- 209 (295)
T ss_dssp HHHHHHHHHSS------TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHH----HTT-----------
T ss_pred HHHHHHHHhcc------CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHH----HcCC----------
Confidence 35666666643 467999999999999999999998 49999999999988876211 1110
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
. .++.+. ...+. ..++||+|+.+-. +.-+...+..+.++|||||++|-.
T Consensus 210 ----------------------~--~~~~v~--~~~~~--~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 210 ----------------------E--DRIEVS--LSEDL--VEGKFDLVVANIL---ADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp ----------------------T--TCEEES--CTSCT--CCS-EEEEEEES----HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred ----------------------C--eeEEEE--Eeccc--ccccCCEEEECCC---HHHHHHHHHHHHHhhCCCCEEEEc
Confidence 0 122111 11111 2489999998753 334567888999999999999977
Q ss_pred ccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 261 GPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 261 gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|=+. .. .+++.+.+++ ||+++..
T Consensus 259 GIl~--~~-----------~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 259 GILE--EQ-----------EDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp EEEG--GG-----------HHHHHHHHHT-TEEEEEE
T ss_pred cccH--HH-----------HHHHHHHHHC-CCEEEEE
Confidence 7432 22 6889999987 9998754
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.15 E-value=9.3e-10 Score=106.44 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=84.3
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++. +..|+|+|+|+.|+..++......
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~--------------------------------- 298 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL--------------------------------- 298 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 458999999999999999975 578999999999999988632210
Q ss_pred CCCCCCCCCCeeEEeccccccc-cCCCceeEEEecc-cccC--------------------cch----HHHHHHHHHHhc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCF-FIDC--------------------ANN----IVSFIETIFNIL 251 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~f-fidt--------------------a~n----~~~yl~~I~~~L 251 (298)
..++.+..+|+.+.. +..++||+|+++- ++.+ -++ ....++.+.+.|
T Consensus 299 -------g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 299 -------GARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred -------CCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 125677888876532 2246799988852 2211 111 234566667899
Q ss_pred cCCeEEEE-eccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 252 KPGGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 252 kpGG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+|||.++. +|. . -.+++.+++++.||..+
T Consensus 372 kpgG~lilEiG~-----~----------Q~e~V~~ll~~~Gf~~v 401 (423)
T PRK14966 372 AEGGFLLLEHGF-----D----------QGAAVRGVLAENGFSGV 401 (423)
T ss_pred CCCcEEEEEECc-----c----------HHHHHHHHHHHCCCcEE
Confidence 99998763 221 1 16789999999999754
No 101
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.15 E-value=1e-09 Score=100.01 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++. +..|+|+|.|+.|+..++.-++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---------------------------------- 132 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---------------------------------- 132 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 458999999999999999976 56899999999999988762211
Q ss_pred CCCCCCCCCCeeEEecccccccc--CCCceeEEEecc-cccC-------------------------cchHHHHHHHHHH
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCF-FIDC-------------------------ANNIVSFIETIFN 249 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~f-fidt-------------------------a~n~~~yl~~I~~ 249 (298)
.+..+..+|+.+... ..++||+|++.- ++.+ ..-+...++...+
T Consensus 133 --------~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~ 204 (251)
T TIGR03704 133 --------AGGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPD 204 (251)
T ss_pred --------cCCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHH
Confidence 012456666654322 135799888752 2211 0113467777779
Q ss_pred hccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 250 ILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 250 ~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+|||||.++-. ++.. ..+++.+++++.||....
T Consensus 205 ~L~~gG~l~l~----~~~~----------~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 205 WLAPGGHLLVE----TSER----------QAPLAVEAFARAGLIARV 237 (251)
T ss_pred hcCCCCEEEEE----ECcc----------hHHHHHHHHHHCCCCcee
Confidence 99999988732 2211 157899999999997653
No 102
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=7.8e-10 Score=102.56 Aligned_cols=134 Identities=24% Similarity=0.235 Sum_probs=94.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
.++.|+++.. ++.+|||+|||+|-|+...++.|.. |.|+|+.+..+.+|+. |. . .|... +.
T Consensus 152 cL~~Le~~~~------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e--Na-~-~N~v~--~~------ 213 (300)
T COG2264 152 CLEALEKLLK------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE--NA-R-LNGVE--LL------ 213 (300)
T ss_pred HHHHHHHhhc------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH--HH-H-HcCCc--hh------
Confidence 4566666543 5789999999999999999999986 9999999999999876 21 1 11110 00
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
......+-.+. ...++||+||.+- -|.-+......|.++|||||++|-.|
T Consensus 214 --------------------------~~~~~~~~~~~-~~~~~~DvIVANI---LA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 214 --------------------------VQAKGFLLLEV-PENGPFDVIVANI---LAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --------------------------hhcccccchhh-cccCcccEEEehh---hHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 00001111111 1236999999875 24456789999999999999999777
Q ss_pred cccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 262 PLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 262 Pl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
=+. .. .+.+.+.+++.||+++..
T Consensus 264 Il~-~q------------~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 264 ILE-DQ------------AESVAEAYEQAGFEVVEV 286 (300)
T ss_pred ehH-hH------------HHHHHHHHHhCCCeEeEE
Confidence 321 11 678899999999999753
No 103
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.10 E-value=1.2e-09 Score=96.00 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHH
Q psy3185 74 LEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 74 ~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~M 153 (298)
++.-.+-+++-+..|-...-. -|+++|.+. | ++..|-|.|||-+++|..+ ..++.|...|+-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nPvd-------~iI~~l~~~-~------~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNPVD-------VIIEWLKKR-P------KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-HHH-------HHHHHHCTS--------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-
T ss_pred HHHHHHHHHHHHhcCCCCcHH-------HHHHHHHhc-C------CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-
Confidence 456677888888889876533 277777642 2 3578999999999999664 35667777776431
Q ss_pred HHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccc
Q psy3185 154 LFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF 233 (298)
Q Consensus 154 l~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff 233 (298)
+-.++++|...+|.++++.|+||.|..
T Consensus 105 -----------------------------------------------------n~~Vtacdia~vPL~~~svDv~VfcLS 131 (219)
T PF05148_consen 105 -----------------------------------------------------NPRVTACDIANVPLEDESVDVAVFCLS 131 (219)
T ss_dssp -----------------------------------------------------STTEEES-TTS-S--TT-EEEEEEES-
T ss_pred -----------------------------------------------------CCCEEEecCccCcCCCCceeEEEEEhh
Confidence 112677888888888999999988876
Q ss_pred ccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 234 IDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 234 idta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|- ..|..+||++.+|+|||||.+....- .|-.-+.++..+.+++.||++...
T Consensus 132 LM-GTn~~~fi~EA~RvLK~~G~L~IAEV-----------~SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 132 LM-GTNWPDFIREANRVLKPGGILKIAEV-----------KSRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp ---SS-HHHHHHHHHHHEEEEEEEEEEEE-----------GGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred hh-CCCcHHHHHHHHheeccCcEEEEEEe-----------cccCcCHHHHHHHHHHCCCeEEec
Confidence 53 35899999999999999999874321 122226899999999999999764
No 104
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.09 E-value=4.9e-10 Score=99.45 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..++++. ..|+|+|+|+ |. . +
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~------------------------------~- 90 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P------------------------------I- 90 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C------------------------------C-
Confidence 46799999999999999999873 4799999998 21 0 0
Q ss_pred CCCCCCCCCCCCeeEEeccccccc--------cCCCceeEEEecccccCcc----h-------HHHHHHHHHHhccCCeE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY--------VHPNKWDCVATCFFIDCAN----N-------IVSFIETIFNILKPGGI 256 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~--------~~~~~fD~V~t~ffidta~----n-------~~~yl~~I~~~LkpGG~ 256 (298)
.++.+..||+.+.. ...++||+|++.+..++.. + ....++.+.++|||||.
T Consensus 91 ----------~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 91 ----------VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred ----------CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 14667888887742 2467899999865433221 1 24689999999999999
Q ss_pred EEE
Q psy3185 257 WIN 259 (298)
Q Consensus 257 ~In 259 (298)
++.
T Consensus 161 ~vi 163 (209)
T PRK11188 161 FVV 163 (209)
T ss_pred EEE
Confidence 985
No 105
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.08 E-value=1.8e-09 Score=97.75 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=94.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
...+|||+|||+|-++..+|++ . ..++|||+.+.|...|+.-.+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l--------------------------------- 90 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL--------------------------------- 90 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh---------------------------------
Confidence 3789999999999999999998 5 6799999999999988762211
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEec--ccccCc----------------chHHHHHHHHHHhccCCeE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATC--FFIDCA----------------NNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~--ffidta----------------~n~~~yl~~I~~~LkpGG~ 256 (298)
+ +-..++++..+|+.++.. ...+||+|+++ ||=... -++.++++...++|||||.
T Consensus 91 -n----~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 91 -N----PLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred -C----cchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCE
Confidence 0 012478999999988864 23679999986 553211 2466899999999999999
Q ss_pred EEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 257 WINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 257 ~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+.-+-|- -...||..++.+.+|...+
T Consensus 166 l~~V~r~--------------erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 166 LAFVHRP--------------ERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred EEEEecH--------------HHHHHHHHHHHhcCCCceE
Confidence 8755331 1267778888888887653
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.07 E-value=4e-09 Score=98.95 Aligned_cols=120 Identities=13% Similarity=0.209 Sum_probs=84.5
Q ss_pred CeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.+|||+|||+|.++..+++. +..|+|+|+|+.|+..|+.-....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~---------------------------------- 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH---------------------------------- 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------------------------
Confidence 68999999999999999987 468999999999999988632210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEec--cc----cc-------C------------cchHHHHHHHHHHhccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FF----ID-------C------------ANNIVSFIETIFNILKP 253 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ff----id-------t------------a~n~~~yl~~I~~~Lkp 253 (298)
.+ ..++.+..+|+.+.. ++++||+|++. |. +. + ..-....++.+.++|||
T Consensus 181 --~l--~~~i~~~~~D~~~~l-~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p 255 (307)
T PRK11805 181 --GL--EDRVTLIESDLFAAL-PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE 255 (307)
T ss_pred --CC--CCcEEEEECchhhhC-CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC
Confidence 00 135788899976643 34689999875 11 00 0 11234678888899999
Q ss_pred CeEEEE-eccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 254 GGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 254 GG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
||.++. +|+ +.+++.+++.+.||...
T Consensus 256 gG~l~~E~g~----------------~~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 256 DGVLVVEVGN----------------SRVHLEEAYPDVPFTWL 282 (307)
T ss_pred CCEEEEEECc----------------CHHHHHHHHhhCCCEEE
Confidence 998873 221 24567778877777543
No 107
>PRK00811 spermidine synthase; Provisional
Probab=99.07 E-value=1e-09 Score=101.79 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=78.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|||.|.++.++++. +. +|+++|+++.|+..++..+....
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~------------------------------- 124 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIA------------------------------- 124 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhc-------------------------------
Confidence 3569999999999999999987 54 69999999999999876432100
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC--cchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC--ANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt--a~n~--~~yl~~I~~~LkpGG~~In 259 (298)
. ......++.++.+|...+.. .+++||+|++-.+-.. ...+ .++++.++++|||||+++.
T Consensus 125 --~-~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 125 --G-GAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred --c-ccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0 00112478899999887643 3579999987532211 1122 5789999999999999985
No 108
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.06 E-value=3.3e-09 Score=93.29 Aligned_cols=161 Identities=14% Similarity=0.188 Sum_probs=103.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
+||++.|+++++.. +.+||++|||||--+..+|+. ...-+--|.....+.-.+.-....
T Consensus 12 ~pIl~vL~~~l~~~-----~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~-------------- 72 (204)
T PF06080_consen 12 DPILEVLKQYLPDS-----GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA-------------- 72 (204)
T ss_pred hHHHHHHHHHhCcc-----CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--------------
Confidence 58999999999842 336999999999999999988 355677788877642222100010
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC--cchHHHHHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC--ANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt--a~n~~~yl~~I~~~LkpGG~ 256 (298)
...+...++.+ |+.....+ .. + ......+.||+|+|+-+||- -+.....|+...++|+|||.
T Consensus 73 -----~~~Nv~~P~~l-Dv~~~~w~------~~-~---~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 73 -----GLPNVRPPLAL-DVSAPPWP------WE-L---PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGL 136 (204)
T ss_pred -----CCcccCCCeEe-ecCCCCCc------cc-c---ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCE
Confidence 00111122222 22110000 00 0 00013579999999988773 34567899999999999999
Q ss_pred EEEeccccccccCCC------------CCCccCC-CHHHHHHHHHhCCCEEEE
Q psy3185 257 WINLGPLLYHYSNML------------NEDSIEP-SYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 257 ~In~gPl~y~~~~~~------------~~~~~~l-s~eEl~~~~~~~GF~i~~ 296 (298)
++..||..++-.-.+ ..+...+ ..++|.++..+.|++++.
T Consensus 137 L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~ 189 (204)
T PF06080_consen 137 LFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEE 189 (204)
T ss_pred EEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCc
Confidence 999999887522111 1233443 689999999999998754
No 109
>PLN03075 nicotianamine synthase; Provisional
Probab=99.06 E-value=1.5e-09 Score=100.79 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCCeEEEecccCcHH-HHHHHH-c--CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRL-AFEIAR-R--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 119 ~~~~VLdpGcG~Grl-a~ela~-~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
.+.+||++|||-|.+ +.-+++ . +-.++|+|.|+.|+..|+......
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------------------------------ 172 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------------------------------ 172 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------------------------------
Confidence 467999999997755 444443 3 346999999999999998754210
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC-cchHHHHHHHHHHhccCCeEEEE
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC-ANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt-a~n~~~yl~~I~~~LkpGG~~In 259 (298)
+++ ..++.|..+|..+.....+.||+|++...++. .++..++++.+++.|||||+++-
T Consensus 173 ~gL-------~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 173 PDL-------SKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred cCc-------cCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 011 24789999999887544578999999854553 47889999999999999999984
No 110
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.06 E-value=1.5e-09 Score=92.78 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=69.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++.++++++..|+|+|.|+.|+..++..+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~----------------------------------- 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA----------------------------------- 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-----------------------------------
Confidence 456999999999999999999988999999999999887652210
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc-hHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN-NIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~-n~~~yl~~I~~~LkpGG~~I 258 (298)
..++.++.+|+.++...+++||.|+++.-.+... -+..+++. ..+.++|+++
T Consensus 58 ------~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 58 ------ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNISTPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred ------CCCEEEEECchhcCCccccCCCEEEECCCcccHHHHHHHHHhc--CCCcceEEEE
Confidence 1367889999998866556799999875333222 22223322 1244777776
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=1.8e-09 Score=101.77 Aligned_cols=96 Identities=22% Similarity=0.157 Sum_probs=72.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|.++..+|+.. ..|+|+|.|+.|+..|+..+.+.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------------------------------- 128 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL------------------------------- 128 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 46799999999999999999863 25999999999999887643220
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. ..++.+..||+.+...+.+.||+|++.+.++. + .+.+.+.|||||.++.
T Consensus 129 -------g-~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~---i---p~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 129 -------G-IENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE---V---PETWFTQLKEGGRVIV 178 (322)
T ss_pred -------C-CCcEEEEeCChhhcccccCCccEEEECCchHH---h---HHHHHHhcCCCCEEEE
Confidence 0 02577888998776555578999998764432 2 3356789999999764
No 112
>KOG1541|consensus
Probab=99.04 E-value=1e-09 Score=96.89 Aligned_cols=119 Identities=21% Similarity=0.219 Sum_probs=82.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
...-|||+|||+|--+..|...|+...|+|+|+.||..|... ..+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~--e~e--------------------------------- 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER--ELE--------------------------------- 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh--hhh---------------------------------
Confidence 467899999999999999999999999999999999988641 000
Q ss_pred CCCCCCCCCeeEEeccc-cccccCCCceeEEEeccccc-----------CcchHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 199 TSDYNDDCDFSMAAGDF-LQVYVHPNKWDCVATCFFID-----------CANNIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf-~~~~~~~~~fD~V~t~ffid-----------ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
++ +..+|. +-+++.+++||.|++.-.|. +...+..|+.+++.+|++|+..+- -|-
T Consensus 95 -------gd--lil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~----QfY 161 (270)
T KOG1541|consen 95 -------GD--LILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL----QFY 161 (270)
T ss_pred -------cC--eeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE----Eec
Confidence 11 233333 23556789999887654332 223456789999999999999872 121
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhCCC
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGLGF 292 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~GF 292 (298)
.+ .+=..|-|.+-..++||
T Consensus 162 pe-------n~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 162 PE-------NEAQIDMIMQQAMKAGF 180 (270)
T ss_pred cc-------chHHHHHHHHHHHhhcc
Confidence 11 11224556666667776
No 113
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.03 E-value=5.6e-10 Score=99.02 Aligned_cols=130 Identities=17% Similarity=0.184 Sum_probs=93.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
-.++||+|||||-.+-.|-.+--..+|+|+|..|+..|.. |. +|-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~e---Kg-------~YD------------------------- 170 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHE---KG-------LYD------------------------- 170 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHh---cc-------chH-------------------------
Confidence 5689999999999999999998899999999999998876 21 110
Q ss_pred CCCCCCCCeeEEecc---ccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe---ccccccccCCCCC
Q psy3185 200 SDYNDDCDFSMAAGD---FLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL---GPLLYHYSNMLNE 273 (298)
Q Consensus 200 ~~~~~~~~~~~~~gD---f~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~---gPl~y~~~~~~~~ 273 (298)
.+.++| |.+. ..++.||.|+..-++-..-++...+-....+|+|||.++.. .|--+.|.- .
T Consensus 171 ---------~L~~Aea~~Fl~~-~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l---~ 237 (287)
T COG4976 171 ---------TLYVAEAVLFLED-LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL---G 237 (287)
T ss_pred ---------HHHHHHHHHHhhh-ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec---c
Confidence 011122 4332 24689999988776666677788889999999999999842 121122211 2
Q ss_pred CccCC--CHHHHHHHHHhCCCEEEEe
Q psy3185 274 DSIEP--SYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 274 ~~~~l--s~eEl~~~~~~~GF~i~~~ 297 (298)
++..+ +..-++..+...||+++..
T Consensus 238 ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 238 PSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred hhhhhccchHHHHHHHHhcCceEEEe
Confidence 33333 5778999999999999753
No 114
>PHA03412 putative methyltransferase; Provisional
Probab=99.03 E-value=3.4e-09 Score=95.35 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCeEEEecccCcHHHHHHHHc-----CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
+.+|||||||+|.++..++++ ...|+|+|+++.|+..|+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------------------------------- 96 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------------------------------- 96 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------------------------------
Confidence 569999999999999999874 357999999999999887511
Q ss_pred CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccCcc---------h-HHHHHHHHHHhccCCeEEE--Ee
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDCAN---------N-IVSFIETIFNILKPGGIWI--NL 260 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidta~---------n-~~~yl~~I~~~LkpGG~~I--n~ 260 (298)
.++.+..+|+..... +++||+|+++ |+-.... . ...+++...++++||+.++ ++
T Consensus 97 -----------~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 97 -----------PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred -----------cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 134567778766543 5689999987 5532222 1 3458888889888888644 33
Q ss_pred ccccccccCCCCCCcc----CCCHHHHHHHHHhCCCEE
Q psy3185 261 GPLLYHYSNMLNEDSI----EPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 261 gPl~y~~~~~~~~~~~----~ls~eEl~~~~~~~GF~i 294 (298)
.|.-|... ++. ..+-.+..++.++.|...
T Consensus 165 ~~~~y~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 165 ANFRYSGT-----HYFRQDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred ccCcccCc-----cceeeccCcccHHHHHHHHhcCeee
Confidence 34334322 222 244566777777777654
No 115
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.03 E-value=2e-09 Score=95.37 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=90.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
...++||.|||.||.+..|-.. .-.|..+|.++..+..|+.-+... . .
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~---~--------------------------- 103 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-N---P--------------------------- 103 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-G---C---------------------------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-C---C---------------------------
Confidence 4679999999999999877544 446999999999999987632210 0 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEE---Eeccc---cccccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWI---NLGPL---LYHYSN 269 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~I---n~gPl---~y~~~~ 269 (298)
.-..+...-..++.+++++||+|.+-+.+- |-.++.+||++....|+|||+.| |+.+- .|...
T Consensus 104 --------~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~- 174 (218)
T PF05891_consen 104 --------RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE- 174 (218)
T ss_dssp --------CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT-
T ss_pred --------CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc-
Confidence 012233333344445568999999877654 56779999999999999999887 55432 22222
Q ss_pred CCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 270 MLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..|+-=|.+.++++++++|++++++
T Consensus 175 ---DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 175 ---DSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp ---TTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ---cCeeecCHHHHHHHHHHcCCEEEEe
Confidence 3578888999999999999999975
No 116
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.01 E-value=1.4e-09 Score=94.52 Aligned_cols=93 Identities=18% Similarity=0.137 Sum_probs=64.3
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~i 194 (298)
+++.+|||+|||+|.++..++++. ..|+|+|+|+.| . .
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---~------------------------------- 71 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---I------------------------------- 71 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---C-------------------------------
Confidence 357799999999999999998874 359999999865 0 0
Q ss_pred CCCCCCCCCCCCCeeEEeccccccc--------cCCCceeEEEeccc--------ccCc---chHHHHHHHHHHhccCCe
Q psy3185 195 PDINTSDYNDDCDFSMAAGDFLQVY--------VHPNKWDCVATCFF--------IDCA---NNIVSFIETIFNILKPGG 255 (298)
Q Consensus 195 pd~~~~~~~~~~~~~~~~gDf~~~~--------~~~~~fD~V~t~ff--------idta---~n~~~yl~~I~~~LkpGG 255 (298)
.++.+..+|+.+.. ...++||+|++... ++.. .++...++.++++|||||
T Consensus 72 -----------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG 140 (188)
T TIGR00438 72 -----------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKG 140 (188)
T ss_pred -----------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCC
Confidence 02334445544321 13568999886321 2221 234678999999999999
Q ss_pred EEEEe
Q psy3185 256 IWINL 260 (298)
Q Consensus 256 ~~In~ 260 (298)
+++..
T Consensus 141 ~lvi~ 145 (188)
T TIGR00438 141 NFVVK 145 (188)
T ss_pred EEEEE
Confidence 99853
No 117
>KOG2940|consensus
Probab=99.01 E-value=5.8e-10 Score=98.97 Aligned_cols=172 Identities=18% Similarity=0.177 Sum_probs=117.4
Q ss_pred HHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCC--CCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHH
Q psy3185 80 TLKQFVRDWSEEGSEERKTCYEPIISEILARFPPE--TINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFA 156 (298)
Q Consensus 80 ~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~--~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~ 156 (298)
-++.+-|||.+--..... +++.+++...+-.. ...+....++|+|||.|.++..|...|. +.+-+|.|+.|+..
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 466777888764322221 23333332211000 1123456899999999999999999986 49999999999987
Q ss_pred HHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccC
Q psy3185 157 SNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDC 236 (298)
Q Consensus 157 a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidt 236 (298)
++. ++. +...++...+|=..+.+.++++|.|+|+.-+|+
T Consensus 111 ~~~----~qd-------------------------------------p~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 111 CRD----AQD-------------------------------------PSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhc----cCC-------------------------------------CceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 763 211 113566778887777778899999999999999
Q ss_pred cchHHHHHHHHHHhccCCeEEEE---eccccccccCC--------CCC--CccC-CC-HHHHHHHHHhCCCEEE
Q psy3185 237 ANNIVSFIETIFNILKPGGIWIN---LGPLLYHYSNM--------LNE--DSIE-PS-YEVVKQVIQGLGFVYE 295 (298)
Q Consensus 237 a~n~~~yl~~I~~~LkpGG~~In---~gPl~y~~~~~--------~~~--~~~~-ls-~eEl~~~~~~~GF~i~ 295 (298)
..++...+..++..|||.|.||- -|.-+|...-. .+. +.+. ++ ..++-.++..+||...
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 99999999999999999999983 24444532210 111 2222 22 4788899999999865
No 118
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.99 E-value=1.4e-08 Score=94.08 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=83.6
Q ss_pred CeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
.+|||+|||+|.++..++..+ ..|+|+|.|+.|+..++.-....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~---------------------------------- 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN---------------------------------- 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 689999999999999999874 58999999999999888632110
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecc-cccC------------------------cchHHHHHHHHHHhccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF-FIDC------------------------ANNIVSFIETIFNILKP 253 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f-fidt------------------------a~n~~~yl~~I~~~Lkp 253 (298)
.+ ..++.++.+|+.+.. ..++||+|++.- ++.+ ...+..+++.+.+.|+|
T Consensus 162 --~~--~~~v~~~~~d~~~~~-~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~ 236 (284)
T TIGR00536 162 --QL--EHRVEFIQSNLFEPL-AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP 236 (284)
T ss_pred --CC--CCcEEEEECchhccC-cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 00 124778888886643 234899998851 1110 11355788899999999
Q ss_pred CeEEEE-eccccccccCCCCCCccCCCHHHHHHHHH-hCCCEE
Q psy3185 254 GGIWIN-LGPLLYHYSNMLNEDSIEPSYEVVKQVIQ-GLGFVY 294 (298)
Q Consensus 254 GG~~In-~gPl~y~~~~~~~~~~~~ls~eEl~~~~~-~~GF~i 294 (298)
||+++. +|+ . -.+++.+++. +.||.-
T Consensus 237 gG~l~~e~g~---~------------q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 237 NGFLVCEIGN---W------------QQKSLKELLRIKFTWYD 264 (284)
T ss_pred CCEEEEEECc---c------------HHHHHHHHHHhcCCCce
Confidence 998863 332 0 1456777777 467753
No 119
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.98 E-value=6e-09 Score=95.91 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=76.6
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+||++|||+|.++.++++.+ -+|+++|+++.|+..++..+.....
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~------------------------------- 121 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG------------------------------- 121 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc-------------------------------
Confidence 4599999999999999998875 4699999999999988764321000
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEeccc--ccCcch--HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFF--IDCANN--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ff--idta~n--~~~yl~~I~~~LkpGG~~In 259 (298)
. ....++.+..+|..++.. .+++||+|+...+ .....+ -.++++.+.++|+|||+++.
T Consensus 122 ---~-~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~ 184 (270)
T TIGR00417 122 ---S-YDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVA 184 (270)
T ss_pred ---c-ccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEE
Confidence 0 011367778888766532 2579999886543 333344 35899999999999999984
No 120
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.98 E-value=5.9e-09 Score=104.02 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=85.2
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+++. +..|+|+|+|+.|+..|+.-....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--------------------------------- 185 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--------------------------------- 185 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 468999999999999999875 578999999999999987632110
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccc--------------------c----CcchHHHHHHHHHHhc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFI--------------------D----CANNIVSFIETIFNIL 251 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffi--------------------d----ta~n~~~yl~~I~~~L 251 (298)
.+ ..++.++.+|+.+.. ..++||+|+++ |+- + ...-+...++.+.++|
T Consensus 186 ---~l--~~~v~~~~~D~~~~~-~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L 259 (506)
T PRK01544 186 ---EV--TDRIQIIHSNWFENI-EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFL 259 (506)
T ss_pred ---CC--ccceeeeecchhhhC-cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhc
Confidence 00 135778888876543 34689999874 211 0 0011234677788899
Q ss_pred cCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 252 KPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 252 kpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
||||.++.- .++. ..+++.+++.+.||..+
T Consensus 260 ~~gG~l~lE----ig~~----------q~~~v~~~~~~~g~~~~ 289 (506)
T PRK01544 260 KPNGKIILE----IGFK----------QEEAVTQIFLDHGYNIE 289 (506)
T ss_pred cCCCEEEEE----ECCc----------hHHHHHHHHHhcCCCce
Confidence 999988631 1111 26788999999999754
No 121
>PRK03612 spermidine synthase; Provisional
Probab=98.97 E-value=7.1e-09 Score=103.82 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=90.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|.++.++++.+ -+|+++|+++.|+..++.- ++ +|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~-------------~~------------------l~~ 345 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS-------------PA------------------LRA 345 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC-------------Cc------------------chh
Confidence 35699999999999999999885 4799999999999988751 00 011
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcch-----HHHHHHHHHHhccCCeEEEE-eccccccccC
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANN-----IVSFIETIFNILKPGGIWIN-LGPLLYHYSN 269 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n-----~~~yl~~I~~~LkpGG~~In-~gPl~y~~~~ 269 (298)
+....+ ...+++++.+|..++.. .+++||+|++.+.-...+. -.++++.+.++|||||+++. .++- ++..
T Consensus 346 ~~~~~~-~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~-~~~~- 422 (521)
T PRK03612 346 LNGGAL-DDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP-YFAP- 422 (521)
T ss_pred hhcccc-CCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc-ccch-
Confidence 110001 12478899999887543 3579999988754322111 13689999999999999873 3321 1111
Q ss_pred CCCCCccCCCHHHHHHHHHhCCCE
Q psy3185 270 MLNEDSIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~~GF~ 293 (298)
-...++.+.+++.||.
T Consensus 423 --------~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 423 --------KAFWSIEATLEAAGLA 438 (521)
T ss_pred --------HHHHHHHHHHHHcCCE
Confidence 1135788888889993
No 122
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.95 E-value=1.1e-08 Score=90.98 Aligned_cols=110 Identities=17% Similarity=0.162 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~ 177 (298)
+.+...+.+.+.. +++.+|||+|||+|..+.-||.. | ..|+++|..+.+...|+..+....
T Consensus 58 P~~~a~~l~~L~l----~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~------------ 121 (209)
T PF01135_consen 58 PSMVARMLEALDL----KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG------------ 121 (209)
T ss_dssp HHHHHHHHHHTTC-----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHhc----CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc------------
Confidence 3455566666543 35789999999999999999987 4 369999999999999988665321
Q ss_pred cccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 178 QTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 178 ~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
..++.++.||...-..+.+.||.|+........+ ..+.+.||+||++
T Consensus 122 ---------------------------~~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrL 168 (209)
T PF01135_consen 122 ---------------------------IDNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRL 168 (209)
T ss_dssp ---------------------------THSEEEEES-GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEE
T ss_pred ---------------------------cCceeEEEcchhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEE
Confidence 1378899999877766778999988877665443 3355679999999
Q ss_pred EE
Q psy3185 258 IN 259 (298)
Q Consensus 258 In 259 (298)
|.
T Consensus 169 V~ 170 (209)
T PF01135_consen 169 VA 170 (209)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 123
>PRK01581 speE spermidine synthase; Validated
Probab=98.93 E-value=1.8e-08 Score=95.87 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=77.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|||+|..+.++.+.+ -.|+++|+++.|+..|+.. |+.. .
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~-------------~~L~------------------~ 198 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNV-------------PELV------------------S 198 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhc-------------cccc------------------h
Confidence 35699999999999999999875 5799999999999998741 1100 0
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC----cchH--HHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC----ANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt----a~n~--~~yl~~I~~~LkpGG~~In 259 (298)
+.... ....++.++.+|..++.. ..++||+|+.-.. |. +..+ .++++.+++.|||||+++.
T Consensus 199 ~~~~~-~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~ 266 (374)
T PRK01581 199 LNKSA-FFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVC 266 (374)
T ss_pred hcccc-CCCCceEEEECcHHHHHHhcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 00000 012588999999988643 3578999987642 22 2222 4689999999999999875
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.91 E-value=1.2e-08 Score=92.05 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=80.8
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..|.+..+ ..+||++|||+|.-+..+|+. +..|+++|.++.++..|+..+.+..
T Consensus 59 ~L~~l~~~~~-------~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-------------- 117 (234)
T PLN02781 59 FLSMLVKIMN-------AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-------------- 117 (234)
T ss_pred HHHHHHHHhC-------CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--------------
Confidence 5555655543 569999999999988888764 3589999999999998887443210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc------CCCceeEEEecccccCc-chHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWDCVATCFFIDCA-NNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD~V~t~ffidta-~n~~~yl~~I~~~Lk 252 (298)
+ ..++.+..||+.+... +.++||+| |+|.. ++...|++.+.++||
T Consensus 118 ----------------------l--~~~i~~~~gda~~~L~~l~~~~~~~~fD~V----fiDa~k~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 118 ----------------------V--DHKINFIQSDALSALDQLLNNDPKPEFDFA----FVDADKPNYVHFHEQLLKLVK 169 (234)
T ss_pred ----------------------C--CCcEEEEEccHHHHHHHHHhCCCCCCCCEE----EECCCHHHHHHHHHHHHHhcC
Confidence 1 1367889999877532 14689998 45643 456789999999999
Q ss_pred CCeEEEE
Q psy3185 253 PGGIWIN 259 (298)
Q Consensus 253 pGG~~In 259 (298)
|||++|.
T Consensus 170 ~GG~ii~ 176 (234)
T PLN02781 170 VGGIIAF 176 (234)
T ss_pred CCeEEEE
Confidence 9999874
No 125
>PRK04457 spermidine synthase; Provisional
Probab=98.90 E-value=8.5e-09 Score=94.62 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=75.1
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+||++|||+|.++..+++. +..|+++|+++.|+..++..+. .|
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-------------------------------~~-- 113 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE-------------------------------LP-- 113 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC-------------------------------CC--
Confidence 568999999999999999876 4579999999999998876211 00
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC--c--chHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC--A--NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt--a--~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.++.||+.++.. .+++||+|+.-.|-.. . -.-.++++.+.++|+|||+++
T Consensus 114 -----~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 114 -----ENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred -----CCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 012478899999877643 2468999876433211 1 112589999999999999996
No 126
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.90 E-value=1.3e-08 Score=92.33 Aligned_cols=130 Identities=22% Similarity=0.235 Sum_probs=89.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
...++||+|+|-|..+..+|...-+|++.|.|..|...-+. + .+++.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~---k-----g~~vl~------------------------ 141 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK---K-----GFTVLD------------------------ 141 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh---C-----CCeEEe------------------------
Confidence 45689999999999999999988889999999999654332 1 122111
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe--cccc-cc-ccC-CCCC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL--GPLL-YH-YSN-MLNE 273 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~--gPl~-y~-~~~-~~~~ 273 (298)
..++...+.+||+|.+.-.||.+.++...|+.|++.|+|+|++|-. =|.. |- +.. ...+
T Consensus 142 ----------------~~~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~ 205 (265)
T PF05219_consen 142 ----------------IDDWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNR 205 (265)
T ss_pred ----------------hhhhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCC
Confidence 1111123468999999999999999999999999999999999742 2321 10 111 0011
Q ss_pred Cc--cC---CC----HHHHHHHHHhCCCEEEE
Q psy3185 274 DS--IE---PS----YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 274 ~~--~~---ls----~eEl~~~~~~~GF~i~~ 296 (298)
|. +. -| .+.+..+++.+||+++.
T Consensus 206 P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~ 237 (265)
T PF05219_consen 206 PSELLPVKGATFEEQVSSLVNVFEPAGFEVER 237 (265)
T ss_pred chhhcCCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 11 11 23 34455788899999975
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=3.3e-08 Score=96.72 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=83.8
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|..+..+++++ ..|+|+|.|+.|+..++..+.+.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-------------------------------- 291 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-------------------------------- 291 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 56799999999999999999875 48999999999999887633210
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEe---ccc---c---------cCcch-------HHHHHHHHHHhcc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVAT---CFF---I---------DCANN-------IVSFIETIFNILK 252 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t---~ff---i---------dta~n-------~~~yl~~I~~~Lk 252 (298)
+.++.+..+|..+... ..++||.|++ |+- + .+..+ ....+++..++||
T Consensus 292 --------g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk 363 (427)
T PRK10901 292 --------GLKATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK 363 (427)
T ss_pred --------CCCeEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0124567777765431 3468998873 221 1 11122 2368999999999
Q ss_pred CCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhC-CCEEE
Q psy3185 253 PGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGL-GFVYE 295 (298)
Q Consensus 253 pGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~-GF~i~ 295 (298)
|||+++-. +.. ...+=+.+.+...+++. +|+++
T Consensus 364 pGG~lvys------tcs----~~~~Ene~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 364 PGGTLLYA------TCS----ILPEENEQQIKAFLARHPDAELL 397 (427)
T ss_pred CCCEEEEE------eCC----CChhhCHHHHHHHHHhCCCCEEe
Confidence 99998722 210 11122356666666653 57654
No 128
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.89 E-value=1.7e-08 Score=95.56 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=73.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||-|.........+. .++|+|+|..-+..|+...+.......-+...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~----------------------- 118 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR----------------------- 118 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE-----------------------
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc-----------------------
Confidence 578999999999988777777765 59999999999999888663322110000000
Q ss_pred CCCCCCCCCCeeEEeccccc-----cccC-CCceeEEEeccccc----CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQ-----VYVH-PNKWDCVATCFFID----CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~-----~~~~-~~~fD~V~t~ffid----ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
......+..+|... .+.+ ..+||+|.+-|.|| +.+.....|+.|.+.|||||++|-..|
T Consensus 119 ------~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 119 ------FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp ------ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ------ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 00123345555432 1222 36999998888777 556677899999999999999985433
No 129
>KOG3045|consensus
Probab=98.88 E-value=3.2e-08 Score=89.29 Aligned_cols=140 Identities=22% Similarity=0.334 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHH
Q psy3185 75 EKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 75 ~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml 154 (298)
+--..-+++=+.-|-...-. .|++.|... | .+.-|-|+|||-+++|. ..-..|...|+-
T Consensus 150 dlYH~gfr~QV~kWP~nPld-------~ii~~ik~r-~------~~~vIaD~GCGEakiA~---~~~~kV~SfDL~---- 208 (325)
T KOG3045|consen 150 DLYHAGFRSQVKKWPENPLD-------VIIRKIKRR-P------KNIVIADFGCGEAKIAS---SERHKVHSFDLV---- 208 (325)
T ss_pred HHHHHHHHHHHHhCCCChHH-------HHHHHHHhC-c------CceEEEecccchhhhhh---ccccceeeeeee----
Confidence 33444455556667655422 277777653 2 46789999999999887 222334444332
Q ss_pred HHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccc
Q psy3185 155 FASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFI 234 (298)
Q Consensus 155 ~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffi 234 (298)
+ .+-.++.+|...++.++++.|++|.|..|
T Consensus 209 --------------------------------------------a------~~~~V~~cDm~~vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 209 --------------------------------------------A------VNERVIACDMRNVPLEDESVDVAVFCLSL 238 (325)
T ss_pred --------------------------------------------c------CCCceeeccccCCcCccCcccEEEeeHhh
Confidence 1 13346788999999899999999888765
Q ss_pred cCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 235 DCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 235 dta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
- ..|+.+++++++|+|||||.|-.. -+ .|-.-+.-.+.+.+..+||++.+.
T Consensus 239 M-gtn~~df~kEa~RiLk~gG~l~IA-Ev----------~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 239 M-GTNLADFIKEANRILKPGGLLYIA-EV----------KSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred h-cccHHHHHHHHHHHhccCceEEEE-eh----------hhhcccHHHHHHHHHHcCCeeeeh
Confidence 3 458999999999999999988532 11 233334667899999999998763
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=3.3e-08 Score=97.26 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=72.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+++. +..|+|+|.|+.|+..++..+.+.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------------------------------- 298 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------------------------------- 298 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence 4679999999999999888864 458999999999999887644321
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEe---c--c-ccc---------Ccch-------HHHHHHHHHHhccC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT---C--F-FID---------CANN-------IVSFIETIFNILKP 253 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t---~--f-fid---------ta~n-------~~~yl~~I~~~Lkp 253 (298)
.+ .++.++.+|+..+. .+++||+|+. | . ++. +.++ ....|.++.++|||
T Consensus 299 -----g~---~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp 369 (445)
T PRK14904 299 -----GI---TIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP 369 (445)
T ss_pred -----CC---CeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00 25677888887764 4578998873 1 1 111 1111 23589999999999
Q ss_pred CeEEE
Q psy3185 254 GGIWI 258 (298)
Q Consensus 254 GG~~I 258 (298)
||+++
T Consensus 370 gG~lv 374 (445)
T PRK14904 370 GGVLV 374 (445)
T ss_pred CcEEE
Confidence 99987
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.85 E-value=7.2e-08 Score=94.77 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=71.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+|||+|.++..+|+.+..|+|+|.|+.|+..|+.-+.. .
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~---~------------------------------- 342 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR---N------------------------------- 342 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH---c-------------------------------
Confidence 457999999999999999999998999999999999998763211 0
Q ss_pred CCCCCCCCCeeEEeccccccc----cCCCceeEEEecccccCc-chHHHHHHHHHHhccCCeE-EEEecc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVATCFFIDCA-NNIVSFIETIFNILKPGGI-WINLGP 262 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t~ffidta-~n~~~yl~~I~~~LkpGG~-~In~gP 262 (298)
. ..++.+..+|+.+.. ..+++||+|++ |.. ..+.+.++.+.+ ++|+++ +|.+.|
T Consensus 343 --~---~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~----dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 343 --G---LDNVTFYHANLEEDFTDQPWALGGFDKVLL----DPPRAGAAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred --C---CCceEEEEeChHHhhhhhhhhcCCCCEEEE----CcCCcChHHHHHHHHh-cCCCeEEEEEeCh
Confidence 0 025788899986543 12467999875 321 124456677766 577765 455566
No 132
>PLN02366 spermidine synthase
Probab=98.84 E-value=2.7e-08 Score=93.34 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|||.|.++.++++.. -.|+.+|+++.|+..++.-+..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~--------------------------------- 137 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPD--------------------------------- 137 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhh---------------------------------
Confidence 36799999999999999999884 4699999999999998863221
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEeccccc--Ccch--HHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFID--CANN--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffid--ta~n--~~~yl~~I~~~LkpGG~~In 259 (298)
... . ....++.++.+|..++.. ++++||+|+.-.+-. .+.. -.++++.++++|+|||+++.
T Consensus 138 ~~~-~-~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 138 LAV-G-FDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred hcc-c-cCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 000 0 112589999999876643 246899988643211 1111 24689999999999999974
No 133
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.84 E-value=4.4e-08 Score=94.92 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=83.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+|||+|||+|.++...+..|. +|+++|.|+.|+..++.-+.. +
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~----N----------------------------- 266 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------------- 266 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 357899999999999998777776 799999999999988762211 0
Q ss_pred CCCCCCCCCCeeEEecccccccc----CCCceeEEEec--ccccCc-------chHHHHHHHHHHhccCCeEEEEecccc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC--FFIDCA-------NNIVSFIETIFNILKPGGIWINLGPLL 264 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~--ffidta-------~n~~~yl~~I~~~LkpGG~~In~gPl~ 264 (298)
.+. ..+++++.||..++.. ..++||+|+.- +|.... .+..++++...++|||||+++-+.
T Consensus 267 ---gl~-~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--- 339 (396)
T PRK15128 267 ---KLD-LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--- 339 (396)
T ss_pred ---CCC-CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe---
Confidence 000 0267889999877642 24689999864 444332 234556677889999999988421
Q ss_pred ccccCCCCCCccCCCHHHHHHHHH
Q psy3185 265 YHYSNMLNEDSIEPSYEVVKQVIQ 288 (298)
Q Consensus 265 y~~~~~~~~~~~~ls~eEl~~~~~ 288 (298)
-+..++.+++.+++.
T Consensus 340 ---------cs~~~~~~~f~~~v~ 354 (396)
T PRK15128 340 ---------CSGLMTSDLFQKIIA 354 (396)
T ss_pred ---------CCCcCCHHHHHHHHH
Confidence 133445666666654
No 134
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.83 E-value=1.3e-07 Score=82.01 Aligned_cols=122 Identities=20% Similarity=0.170 Sum_probs=90.7
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
+++.+++|+|||||.++.|+|..| .+|+|+|-++.++...+. .+..
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~---N~~~----------------------------- 80 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER---NAAR----------------------------- 80 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH---HHHH-----------------------------
Confidence 467899999999999999999665 579999999999988766 2211
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE-EeccccccccCCCCCC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI-NLGPLLYHYSNMLNED 274 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I-n~gPl~y~~~~~~~~~ 274 (298)
+. -.|+.++.||.-+...+..++|+|+- ---.++...|+++...|||||.+| |.--+
T Consensus 81 ------fg-~~n~~vv~g~Ap~~L~~~~~~daiFI----GGg~~i~~ile~~~~~l~~ggrlV~naitl----------- 138 (187)
T COG2242 81 ------FG-VDNLEVVEGDAPEALPDLPSPDAIFI----GGGGNIEEILEAAWERLKPGGRLVANAITL----------- 138 (187)
T ss_pred ------hC-CCcEEEEeccchHhhcCCCCCCEEEE----CCCCCHHHHHHHHHHHcCcCCeEEEEeecH-----------
Confidence 01 14899999998777554448998864 434788899999999999999987 32111
Q ss_pred ccCCCHHHHHHHHHhCCC-EEEE
Q psy3185 275 SIEPSYEVVKQVIQGLGF-VYEV 296 (298)
Q Consensus 275 ~~~ls~eEl~~~~~~~GF-~i~~ 296 (298)
=+.-.+.+.+++.|| +++.
T Consensus 139 ---E~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 139 ---ETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred ---HHHHHHHHHHHHcCCceEEE
Confidence 024456677778888 5543
No 135
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=7.7e-08 Score=94.32 Aligned_cols=101 Identities=19% Similarity=0.127 Sum_probs=73.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|+. + ..|+|+|.|..|+..++..+.+.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------------------------------- 300 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------------------------------- 300 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999999986 2 47999999999999887643321
Q ss_pred CCCCCCCCCCCCeeEEeccccccc----cCCCceeEEEe---ccc---ccCcc---------h-------HHHHHHHHHH
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY----VHPNKWDCVAT---CFF---IDCAN---------N-------IVSFIETIFN 249 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~----~~~~~fD~V~t---~ff---idta~---------n-------~~~yl~~I~~ 249 (298)
. -.++.++.+|+.++. ...++||.|+. |.- +..-+ + ..+.++++.+
T Consensus 301 -------g-~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 301 -------G-LKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred -------C-CCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 025777888887764 23478998874 221 11111 1 3578999999
Q ss_pred hccCCeEEE
Q psy3185 250 ILKPGGIWI 258 (298)
Q Consensus 250 ~LkpGG~~I 258 (298)
+|||||+++
T Consensus 373 ~lkpgG~lv 381 (434)
T PRK14901 373 LLKPGGTLV 381 (434)
T ss_pred hcCCCCEEE
Confidence 999999987
No 136
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.80 E-value=5.8e-08 Score=100.54 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=87.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++..+|+.|.. |+++|.|+.|+..++.-+.. +.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~----ng----------------------------- 585 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL----NG----------------------------- 585 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----hC-----------------------------
Confidence 569999999999999999999874 99999999999988763221 00
Q ss_pred CCCCCCCCCeeEEecccccccc-CCCceeEEEec--cccc---------CcchHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC--FFID---------CANNIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~--ffid---------ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
+. ..++.++.+|..++.. ..++||+|++- +|.. ...+..+.+..+.++|+|||+++...-
T Consensus 586 ---~~-~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~---- 657 (702)
T PRK11783 586 ---LS-GRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN---- 657 (702)
T ss_pred ---CC-ccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC----
Confidence 00 0267889999876542 24689998873 3322 123456788888999999998863211
Q ss_pred ccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 267 YSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 267 ~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+..++.+ .+++.+.||++..
T Consensus 658 --------~~~~~~~--~~~~~~~g~~~~~ 677 (702)
T PRK11783 658 --------KRGFKMD--EEGLAKLGLKAEE 677 (702)
T ss_pred --------CccCChh--HHHHHhCCCeEEE
Confidence 1111121 6677778888754
No 137
>KOG2899|consensus
Probab=98.78 E-value=9.5e-08 Score=85.59 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=104.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc------cccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN------ILTHHQTM 190 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~------~~~~~~~r 190 (298)
.+..+||+||-.|-++..||+. |. .|.|+|+.+..+..|+.-+.+-.....-+.--|++.+--+ ...++.--
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 3568999999999999999998 54 4999999999999988733221100000001111111100 11112222
Q ss_pred ccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc---ccc---CcchHHHHHHHHHHhccCCeEEEEecccc
Q psy3185 191 AVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FID---CANNIVSFIETIFNILKPGGIWINLGPLL 264 (298)
Q Consensus 191 ~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fid---ta~n~~~yl~~I~~~LkpGG~~In~gPl~ 264 (298)
...+||-.. ....|..+...||.+. ....||+|++.- .|| .-+-+..++..|+++|.|||++| +.|=-
T Consensus 138 t~~~p~n~~---f~~~n~vle~~dfl~~--~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vEPQp 211 (288)
T KOG2899|consen 138 TTDFPDNVW---FQKENYVLESDDFLDM--IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VEPQP 211 (288)
T ss_pred cccCCcchh---cccccEEEecchhhhh--ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-EcCCc
Confidence 223333221 1235777778888754 578999987642 233 34569999999999999999998 56643
Q ss_pred ccccCC---------CCCCccCCCHHHHHHHHHhC--CCEEE
Q psy3185 265 YHYSNM---------LNEDSIEPSYEVVKQVIQGL--GFVYE 295 (298)
Q Consensus 265 y~~~~~---------~~~~~~~ls~eEl~~~~~~~--GF~i~ 295 (298)
|..... .+...+.+.++....++.+. ||+-.
T Consensus 212 WksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 212 WKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred hHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeee
Confidence 321100 12346778889888888764 66543
No 138
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.77 E-value=2.1e-07 Score=82.50 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=82.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..|.+... ..+||++|||+|.-+..+|+. +..|+.+|.++.+...|+..+.++.-
T Consensus 36 lL~~l~~~~~-------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~------------- 95 (205)
T PF01596_consen 36 LLQMLVRLTR-------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL------------- 95 (205)
T ss_dssp HHHHHHHHHT--------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-------------
T ss_pred HHHHHHHhcC-------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-------------
Confidence 5666665543 469999999999999999975 57899999999999999886654210
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc------CCCceeEEEecccccCc-chHHHHHHHHHHhcc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWDCVATCFFIDCA-NNIVSFIETIFNILK 252 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD~V~t~ffidta-~n~~~yl~~I~~~Lk 252 (298)
..++.+..||..++.. ..++||.|+ ||.. .+-..|++.+.++|+
T Consensus 96 -------------------------~~~I~~~~gda~~~l~~l~~~~~~~~fD~VF----iDa~K~~y~~y~~~~~~ll~ 146 (205)
T PF01596_consen 96 -------------------------DDRIEVIEGDALEVLPELANDGEEGQFDFVF----IDADKRNYLEYFEKALPLLR 146 (205)
T ss_dssp -------------------------GGGEEEEES-HHHHHHHHHHTTTTTSEEEEE----EESTGGGHHHHHHHHHHHEE
T ss_pred -------------------------CCcEEEEEeccHhhHHHHHhccCCCceeEEE----EcccccchhhHHHHHhhhcc
Confidence 1378899999987643 136899884 6644 457889999999999
Q ss_pred CCeEEEE
Q psy3185 253 PGGIWIN 259 (298)
Q Consensus 253 pGG~~In 259 (298)
|||++|.
T Consensus 147 ~ggvii~ 153 (205)
T PF01596_consen 147 PGGVIIA 153 (205)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999983
No 139
>KOG3010|consensus
Probab=98.77 E-value=1.7e-08 Score=90.34 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=70.0
Q ss_pred eEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD 201 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~ 201 (298)
.++|+|||+|.-+.-+|...-+|.|+|.|+.||..++. +... -|.|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k---~~~~-------~y~~------------------------ 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKK---HPPV-------TYCH------------------------ 81 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhc---CCCc-------cccc------------------------
Confidence 89999999998888888886679999999999998765 2110 1111
Q ss_pred CCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCe
Q psy3185 202 YNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGG 255 (298)
Q Consensus 202 ~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG 255 (298)
...+|...+...+...+++.|.|++.=.+|+. |+..+.+.++|+|||.|
T Consensus 82 ----t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 82 ----TPSTMSSDEMVDLLGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDG 130 (261)
T ss_pred ----CCccccccccccccCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCC
Confidence 12234444444554457999999887777766 57899999999999866
No 140
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=1.9e-07 Score=91.81 Aligned_cols=101 Identities=19% Similarity=0.148 Sum_probs=72.5
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|+. +..|+|+|.|..|+..++..+.+.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------------------------------- 298 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------------------------------- 298 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-------------------------------
Confidence 4578999999999999999986 357999999999999887643220
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-CCCceeEEEe---ccc---ccC---------cch-------HHHHHHHHHHhcc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVAT---CFF---IDC---------ANN-------IVSFIETIFNILK 252 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t---~ff---idt---------a~n-------~~~yl~~I~~~Lk 252 (298)
.+ .++.++.+|+.++.. -.++||+|++ |.- +.+ ..+ ..+.|+.+.++||
T Consensus 299 -----g~---~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk 370 (444)
T PRK14902 299 -----GL---TNIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK 370 (444)
T ss_pred -----CC---CeEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 247788888877532 1278998875 221 111 111 2468999999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|||.++
T Consensus 371 pGG~lv 376 (444)
T PRK14902 371 KGGILV 376 (444)
T ss_pred CCCEEE
Confidence 999987
No 141
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.72 E-value=9.6e-08 Score=93.61 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|.. +..|+|+|.|..|+..++..+.+.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------------------------------- 285 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------------------------------- 285 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4679999999999999999876 468999999999999887744321
Q ss_pred CCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEe---c--cc-ccCcc----------------hHHHHHHHHHHhcc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVAT---C--FF-IDCAN----------------NIVSFIETIFNILK 252 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t---~--ff-idta~----------------n~~~yl~~I~~~Lk 252 (298)
.+ .++.+..+|...+. ..+++||.|+. | +- +..-+ ...+.|+.+.++||
T Consensus 286 -----g~---~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk 357 (431)
T PRK14903 286 -----KL---SSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE 357 (431)
T ss_pred -----CC---CeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 24667788877654 23578998864 2 21 21112 12456899999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|||+++
T Consensus 358 pGG~Lv 363 (431)
T PRK14903 358 KGGILL 363 (431)
T ss_pred CCCEEE
Confidence 999986
No 142
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.6e-07 Score=81.57 Aligned_cols=97 Identities=19% Similarity=0.110 Sum_probs=75.7
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.++.+||++|||+|..+--||+.+-.|+++|........|+..|..
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~---------------------------------- 116 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET---------------------------------- 116 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH----------------------------------
Confidence 3578999999999999999999988999999999998888774432
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+. ..|+.+.+||-..-+.+...||.|+..-..++.+ +.+.+-|||||++|.
T Consensus 117 ----lg-~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 117 ----LG-YENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVI 167 (209)
T ss_pred ----cC-CCceEEEECCcccCCCCCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEE
Confidence 11 1368999999988887789999775444344443 234457999999974
No 143
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.69 E-value=1.4e-07 Score=92.75 Aligned_cols=116 Identities=23% Similarity=0.255 Sum_probs=80.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC------CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWV 176 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~ 176 (298)
|...|.+.........++..|||+|||+|-|+...++.| .+|+|+|-|+.+....+.+.+..
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n------------ 237 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN------------ 237 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT------------
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc------------
Confidence 445555554422111135689999999999998877765 57999999998777665543320
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccC
Q psy3185 177 QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKP 253 (298)
Q Consensus 177 ~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~Lkp 253 (298)
.+ ...+.++.||.+++.. +.+.|+|||- .|.+.- -..+.|....|.|||
T Consensus 238 ------------------------~w--~~~V~vi~~d~r~v~l-pekvDIIVSElLGsfg~nE-l~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 238 ------------------------GW--GDKVTVIHGDMREVEL-PEKVDIIVSELLGSFGDNE-LSPECLDAADRFLKP 289 (448)
T ss_dssp ------------------------TT--TTTEEEEES-TTTSCH-SS-EEEEEE---BTTBTTT-SHHHHHHHGGGGEEE
T ss_pred ------------------------CC--CCeEEEEeCcccCCCC-CCceeEEEEeccCCccccc-cCHHHHHHHHhhcCC
Confidence 01 1478999999999864 5699999985 466654 567889999999999
Q ss_pred CeEEE
Q psy3185 254 GGIWI 258 (298)
Q Consensus 254 GG~~I 258 (298)
||+.|
T Consensus 290 ~Gi~I 294 (448)
T PF05185_consen 290 DGIMI 294 (448)
T ss_dssp EEEEE
T ss_pred CCEEe
Confidence 99998
No 144
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.68 E-value=1.1e-07 Score=87.39 Aligned_cols=101 Identities=22% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||+|||+|..+..+|.+ ...|+|+|.|..|+..++..+.+..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g------------------------------ 120 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG------------------------------ 120 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC------------------------------
Confidence 4679999999999999999875 2479999999999998876443210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEe---ccc---ccC---------c-------chHHHHHHHHHHhccC
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT---CFF---IDC---------A-------NNIVSFIETIFNILKP 253 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t---~ff---idt---------a-------~n~~~yl~~I~~~Lkp 253 (298)
+ .++.+..+|...+....+.||+|+. |.- +.. . ....+.|+...++|||
T Consensus 121 ------~---~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp 191 (264)
T TIGR00446 121 ------V---LNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP 191 (264)
T ss_pred ------C---CcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 2466677776655433456998864 221 111 1 1234689999999999
Q ss_pred CeEEE
Q psy3185 254 GGIWI 258 (298)
Q Consensus 254 GG~~I 258 (298)
||+++
T Consensus 192 gG~lv 196 (264)
T TIGR00446 192 GGVLV 196 (264)
T ss_pred CCEEE
Confidence 99887
No 145
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.68 E-value=1.1e-07 Score=84.78 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=103.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
+|+.+.+.+.--. ..+.+.+|||-.-|+|..|.+-+++|. .|..+|-.+..|..|. +-||-+.
T Consensus 118 dP~~Dt~~Kv~~V--~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~-------------lNPwSr~- 181 (287)
T COG2521 118 DPLEDTLAKVELV--KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAK-------------LNPWSRE- 181 (287)
T ss_pred CcHHHHHhhhhee--ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeec-------------cCCCCcc-
Confidence 3555665543210 123578999999999999999999998 8999999999887653 2254332
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCCceeEEEec---ccccCcchHHHHHHHHHHhccCC
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATC---FFIDCANNIVSFIETIFNILKPG 254 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~---ffidta~n~~~yl~~I~~~LkpG 254 (298)
+ ....+.++.||..++.. ++++||+|+-- |.+-+.---.++.++++|+||||
T Consensus 182 ----------------------l-~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrg 238 (287)
T COG2521 182 ----------------------L-FEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRG 238 (287)
T ss_pred ----------------------c-cccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence 1 11357899999877653 67899998742 43433111246899999999999
Q ss_pred eEEEEeccccccccCCCCCCccCCC-HHHHHHHHHhCCCEEEE
Q psy3185 255 GIWINLGPLLYHYSNMLNEDSIEPS-YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 255 G~~In~gPl~y~~~~~~~~~~~~ls-~eEl~~~~~~~GF~i~~ 296 (298)
|.+. |+-..|+.....+. +..+.+-+++.||+.++
T Consensus 239 GrlF-------HYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 239 GRLF-------HYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred CcEE-------EEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 9875 44433332333333 57889999999999664
No 146
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.68 E-value=2.2e-07 Score=87.55 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=79.4
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+++..||||=||||.+..|..-.|..|.|+|++..|+.-++.-+++ +.+++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~----------------------------y~i~~- 246 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY----------------------------YGIED- 246 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh----------------------------hCcCc-
Confidence 4577999999999999999999999999999999999987653221 11111
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccccC------cch-HHHHHHHHHHhccCCeEEEEecc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFIDC------ANN-IVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffidt------a~n-~~~yl~~I~~~LkpGG~~In~gP 262 (298)
-..+..+|.+.++..++++|+|+|= |-.-+ ... ..+.|++++++||+||+++...|
T Consensus 247 ---------~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 247 ---------YPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ---------eeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1123444888888777789999983 22221 122 45799999999999999887666
No 147
>PLN02476 O-methyltransferase
Probab=98.67 E-value=3.1e-07 Score=84.84 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=79.4
Q ss_pred CCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
..+||++|+|+|.-+..+|.. +..|+++|.++.++..|+..+.+..
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG------------------------------- 167 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG------------------------------- 167 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-------------------------------
Confidence 569999999999999999974 4569999999999999887544310
Q ss_pred CCCCCCCCCCCeeEEeccccccccC------CCceeEEEecccccCc-chHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH------PNKWDCVATCFFIDCA-NNIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~------~~~fD~V~t~ffidta-~n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
+ ..++.+..||+.++... .++||.|+ ||.. .+...|++.+.++|+|||++| +.-.+|+
T Consensus 168 -----l--~~~I~li~GdA~e~L~~l~~~~~~~~FD~VF----IDa~K~~Y~~y~e~~l~lL~~GGvIV-~DNvL~~ 232 (278)
T PLN02476 168 -----V--SHKVNVKHGLAAESLKSMIQNGEGSSYDFAF----VDADKRMYQDYFELLLQLVRVGGVIV-MDNVLWH 232 (278)
T ss_pred -----C--CCcEEEEEcCHHHHHHHHHhcccCCCCCEEE----ECCCHHHHHHHHHHHHHhcCCCcEEE-EecCccC
Confidence 1 13788999998776421 36899764 6744 457889999999999999987 3344565
No 148
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.66 E-value=2.8e-07 Score=90.22 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=74.5
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~ 181 (298)
++++.+.+.+.. .++.+|||+|||+|.++..+|+.+..|+|+|.|+.|+..++.-+.. +
T Consensus 279 ~l~~~~~~~l~~----~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~----~------------- 337 (431)
T TIGR00479 279 KLVDRALEALEL----QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL----N------------- 337 (431)
T ss_pred HHHHHHHHHhcc----CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH----h-------------
Confidence 445555554432 2356999999999999999999988999999999999988762211 0
Q ss_pred cccccccccccccCCCCCCCCCCCCCeeEEecccccccc----CCCceeEEEecccccCcc-h-HHHHHHHHHHhccCCe
Q psy3185 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATCFFIDCAN-N-IVSFIETIFNILKPGG 255 (298)
Q Consensus 182 ~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~ffidta~-n-~~~yl~~I~~~LkpGG 255 (298)
. -.++.+..||+.+... ..++||+|+. |... . ..+.++.+.+ ++|++
T Consensus 338 -------------------~---~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~----dPPr~G~~~~~l~~l~~-l~~~~ 390 (431)
T TIGR00479 338 -------------------G---IANVEFLAGTLETVLPKQPWAGQIPDVLLL----DPPRKGCAAEVLRTIIE-LKPER 390 (431)
T ss_pred -------------------C---CCceEEEeCCHHHHHHHHHhcCCCCCEEEE----CcCCCCCCHHHHHHHHh-cCCCE
Confidence 0 1367889999876421 2457998873 4322 1 2456666655 78988
Q ss_pred EEE
Q psy3185 256 IWI 258 (298)
Q Consensus 256 ~~I 258 (298)
+..
T Consensus 391 ivy 393 (431)
T TIGR00479 391 IVY 393 (431)
T ss_pred EEE
Confidence 653
No 149
>PLN02672 methionine S-methyltransferase
Probab=98.66 E-value=2.8e-07 Score=98.39 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=86.5
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||+|||+|.++..+|+++ ..|+|+|+|+.|+..|+.-... +... ++ .. ..-+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~----n~l~--~~------------~~---~~~~~ 177 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL----NALD--DD------------GL---PVYDG 177 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----cCcc--cc------------cc---ccccc
Confidence 4589999999999999999874 5799999999999988762111 0000 00 00 00000
Q ss_pred CCCCCCCCCCeeEEeccccccccCC-CceeEEEec--ccccC------------c--------------------ch---
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHP-NKWDCVATC--FFIDC------------A--------------------NN--- 239 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~-~~fD~V~t~--ffidt------------a--------------------~n--- 239 (298)
... ....++.++.+|+.+..... .+||+||++ |.... . ++
T Consensus 178 ~~~--~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~ 255 (1082)
T PLN02672 178 EGK--TLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLG 255 (1082)
T ss_pred ccc--cccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHH
Confidence 000 00136889999987765322 379999986 32111 0 11
Q ss_pred -HHHHHHHHHHhccCCeEEE-EeccccccccCCCCCCccCCCHHHHH-HHHHhCCCEEEE
Q psy3185 240 -IVSFIETIFNILKPGGIWI-NLGPLLYHYSNMLNEDSIEPSYEVVK-QVIQGLGFVYEV 296 (298)
Q Consensus 240 -~~~yl~~I~~~LkpGG~~I-n~gPl~y~~~~~~~~~~~~ls~eEl~-~~~~~~GF~i~~ 296 (298)
+...++...++|||||.++ .+|. .. .+.+. +++++.||+...
T Consensus 256 ~yr~i~~~a~~~L~pgG~l~lEiG~---~q------------~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 256 LIARAVEEGISVIKPMGIMIFNMGG---RP------------GQAVCERLFERRGFRITK 300 (1082)
T ss_pred HHHHHHHHHHHhccCCCEEEEEECc---cH------------HHHHHHHHHHHCCCCeeE
Confidence 1345566667999999875 3442 11 45777 689899998764
No 150
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.66 E-value=6.7e-08 Score=88.21 Aligned_cols=179 Identities=19% Similarity=0.195 Sum_probs=100.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~ 177 (298)
.....+..+.+.+.+. ..++.++||+|||.--.-.--|..-+ +++..|+++.-....+.=+++. ..+.-.|++.
T Consensus 38 ~~~~~L~~l~~~f~~g--~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~---~a~DWs~~~~ 112 (256)
T PF01234_consen 38 ILLFFLKNLHETFSSG--GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE---GAFDWSPFWK 112 (256)
T ss_dssp HHHHHHHHHHHHHHTS--SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT----TS--THHHHH
T ss_pred hHHHHHHHHHHHhCcc--CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC---CCCCccHHHH
Confidence 4455666676666532 23467899999999555433344445 5999999999877665544432 3333344444
Q ss_pred ccccc-------ccccccccccccCCCCCCCCCCCCCeeEEecccccccc------CCCceeEEEecccccCc-chHH--
Q psy3185 178 QTDNN-------ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWDCVATCFFIDCA-NNIV-- 241 (298)
Q Consensus 178 ~~s~~-------~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD~V~t~ffidta-~n~~-- 241 (298)
.-++. ...+.++|.. | -.++.+|.+.-.+ -+.+||+|+|+|.++.+ +++.
T Consensus 113 ~v~~lEg~~~~~~e~e~~lR~~-V-------------k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y 178 (256)
T PF01234_consen 113 YVCELEGKREKWEEKEEKLRRA-V-------------KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEY 178 (256)
T ss_dssp HHHHHTTSSSGHHHHHHHHHHH-E-------------EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHH
T ss_pred HHHhccCCcchhhhHHHHHHHh-h-------------ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHH
Confidence 32221 1112233310 0 0133444433221 12469999999998843 3444
Q ss_pred -HHHHHHHHhccCCeEEEEecccc---ccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 242 -SFIETIFNILKPGGIWINLGPLL---YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 242 -~yl~~I~~~LkpGG~~In~gPl~---y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
..++.|.++|||||++|-.|-+- |..... .-+.+.++.+.+++.++++||+|+..
T Consensus 179 ~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~-~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 179 RRALRNISSLLKPGGHLILAGVLGSTYYMVGGH-KFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE-EEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE-ecccccCCHHHHHHHHHHcCCEEEec
Confidence 45677778999999999665442 221110 12467799999999999999999763
No 151
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.65 E-value=1.2e-07 Score=87.34 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+.+.. .++.+|||+|||+|.++..|++++.+|+|+|.|+.|+..++.
T Consensus 30 i~~~i~~~l~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~ 82 (272)
T PRK00274 30 ILDKIVDAAGP----QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAE 82 (272)
T ss_pred HHHHHHHhcCC----CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHH
Confidence 45555554432 246799999999999999999999899999999999988765
No 152
>PRK04148 hypothetical protein; Provisional
Probab=98.65 E-value=3.4e-07 Score=75.60 Aligned_cols=99 Identities=11% Similarity=0.121 Sum_probs=71.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcH-HHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGR-LAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Gr-la~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
.|.++|.+.++.. ++.+|||+|||+|. +|..|++.|++|+|+|.|+..+..++..
T Consensus 3 ~i~~~l~~~~~~~----~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-------------------- 58 (134)
T PRK04148 3 TIAEFIAENYEKG----KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-------------------- 58 (134)
T ss_pred HHHHHHHHhcccc----cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------------------
Confidence 4677788877632 45799999999996 9999999999999999999977655431
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccC
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKP 253 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~Lkp 253 (298)
.+..+.+|..+-..+ -+.+|+|.++ ...+++...+-++.+-+.-
T Consensus 59 --------------------------~~~~v~dDlf~p~~~~y~~a~liysi---rpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 59 --------------------------GLNAFVDDLFNPNLEIYKNAKLIYSI---RPPRDLQPFILELAKKINV 103 (134)
T ss_pred --------------------------CCeEEECcCCCCCHHHHhcCCEEEEe---CCCHHHHHHHHHHHHHcCC
Confidence 223555565443221 2567777765 4677888888888876553
No 153
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=7.3e-07 Score=82.67 Aligned_cols=119 Identities=24% Similarity=0.301 Sum_probs=80.0
Q ss_pred eEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+|||+|||+|-+|..+|+.+- .|+|+|+|+..+.+|+. | +.. +.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~--N-a~~-~~------------------------------ 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE--N-AER-NG------------------------------ 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH--H-HHH-cC------------------------------
Confidence 799999999999999999975 89999999999999876 2 111 00
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEec-ccccC------------------------cchHHHHHHHHHHhccCC
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-FFIDC------------------------ANNIVSFIETIFNILKPG 254 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-ffidt------------------------a~n~~~yl~~I~~~LkpG 254 (298)
+ .++..+.+|+.+-. .++||+||++ =.|.. .+-+...+..+.+.|+||
T Consensus 159 --l---~~~~~~~~dlf~~~--~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~ 231 (280)
T COG2890 159 --L---VRVLVVQSDLFEPL--RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPG 231 (280)
T ss_pred --C---ccEEEEeeeccccc--CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCC
Confidence 0 13444555543322 3477777765 12221 122445777788899999
Q ss_pred eEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCC-CEEE
Q psy3185 255 GIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLG-FVYE 295 (298)
Q Consensus 255 G~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~G-F~i~ 295 (298)
|.++.- .++. ..+++.+++.+.| |..+
T Consensus 232 g~l~le----~g~~----------q~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 232 GVLILE----IGLT----------QGEAVKALFEDTGFFEIV 259 (280)
T ss_pred cEEEEE----ECCC----------cHHHHHHHHHhcCCceEE
Confidence 988731 1111 1688999999999 6543
No 154
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.60 E-value=3e-07 Score=86.51 Aligned_cols=73 Identities=16% Similarity=0.064 Sum_probs=57.4
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+|+.|..|+|+|.|+.|+..++.-... .
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~---~-------------------------------- 218 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAE---L-------------------------------- 218 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH---c--------------------------------
Confidence 46999999999999999999999999999999999988763211 0
Q ss_pred CCCCCCCCeeEEecccccccc-CCCceeEEEec
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC 231 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ 231 (298)
.+ .++.+..+|+.++.. ..++||+|+..
T Consensus 219 -~l---~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 219 -GL---TNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred -CC---CceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 01 267889999877643 23579988853
No 155
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.60 E-value=3.4e-07 Score=89.60 Aligned_cols=102 Identities=16% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+|||+|||+|..+..+++. + ..|+|+|.|..|+..++..+.+.. .
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g----~-------------------------- 287 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG----L-------------------------- 287 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC----C--------------------------
Confidence 4679999999999999999986 3 689999999999998877443210 0
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEe-----cc-cccCcch----------------HHHHHHHHHHhcc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVAT-----CF-FIDCANN----------------IVSFIETIFNILK 252 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t-----~f-fidta~n----------------~~~yl~~I~~~Lk 252 (298)
. ..+.+..+|...... ..++||.|+. .+ .+...++ ..+.|+.+.++||
T Consensus 288 ------~--~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk 359 (426)
T TIGR00563 288 ------T--IKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK 359 (426)
T ss_pred ------C--eEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 122234445433321 3568998863 22 2322222 3578999999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|||+++
T Consensus 360 pgG~lv 365 (426)
T TIGR00563 360 TGGTLV 365 (426)
T ss_pred CCcEEE
Confidence 999997
No 156
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.59 E-value=3e-07 Score=80.95 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=69.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc---------C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccc--ccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR---------G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYP--WVQQTDNNILT 185 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~---------G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p--~~~~~s~~~~~ 185 (298)
...+|+..||++|--++-||.. + +.+.|.|+|..+|..|+. ..-......-.| +...|-. ...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~---G~Y~~~~~~~~~~~~~~ryf~-~~~ 106 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA---GIYPERSLRGLPPAYLRRYFT-ERD 106 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH---TEEEGGGGTTS-HHHHHHHEE-EE-
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh---CCCCHHHHhhhHHHHHHHhcc-ccC
Confidence 5689999999999988877642 2 579999999999999875 110000000000 0000000 000
Q ss_pred ccccccccc-CCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccc-cc-CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 186 HHQTMAVTF-PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF-ID-CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 186 ~~~~r~~~i-pd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ff-id-ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.+ .+.| |++ ...+.|...|..+.++..+.||+|++--+ |- +.+.....++.+++.|+|||+++ +|+
T Consensus 107 ~~---~~~v~~~l-------r~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~-lG~ 175 (196)
T PF01739_consen 107 GG---GYRVKPEL-------RKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF-LGH 175 (196)
T ss_dssp CC---CTTE-HHH-------HTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE-E-T
T ss_pred CC---ceeEChHH-------cCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE-Eec
Confidence 00 0111 111 24788999999884446799999987533 22 44456789999999999999998 454
No 157
>KOG1975|consensus
Probab=98.58 E-value=1.9e-07 Score=86.75 Aligned_cols=124 Identities=17% Similarity=0.292 Sum_probs=84.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++|-..|...+- .+...+|++|||-|......-+.|. .+.|+|++..-+..|+...+..... .. -|+
T Consensus 104 NwIKs~LI~~y~-----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r--~~--~~~--- 171 (389)
T KOG1975|consen 104 NWIKSVLINLYT-----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNR--FK--KFI--- 171 (389)
T ss_pred HHHHHHHHHHHh-----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhh--hh--ccc---
Confidence 344455555553 2466899999999998888888886 4999999999999888765422110 00 000
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccc-----c-cCCCceeEEEeccccc----CcchHHHHHHHHHH
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQV-----Y-VHPNKWDCVATCFFID----CANNIVSFIETIFN 249 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~-----~-~~~~~fD~V~t~ffid----ta~n~~~yl~~I~~ 249 (298)
....+.+||-... + +.+.+||+|.|-|.+| |-+...-.+..+.+
T Consensus 172 --------------------------f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~ 225 (389)
T KOG1975|consen 172 --------------------------FTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAK 225 (389)
T ss_pred --------------------------ceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHh
Confidence 1234556653321 1 2334599999888777 44556779999999
Q ss_pred hccCCeEEEEecc
Q psy3185 250 ILKPGGIWINLGP 262 (298)
Q Consensus 250 ~LkpGG~~In~gP 262 (298)
+|||||+||-.-|
T Consensus 226 ~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 226 CLKPGGVFIGTIP 238 (389)
T ss_pred hcCCCcEEEEecC
Confidence 9999999995444
No 158
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.58 E-value=3.8e-07 Score=83.37 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=62.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++.+|||+|||+|.++..+++++..|+|+|++..|+..++..+..
T Consensus 17 ~~~~iv~~~~~----~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~------------------- 73 (258)
T PRK14896 17 VVDRIVEYAED----TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA------------------- 73 (258)
T ss_pred HHHHHHHhcCC----CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc-------------------
Confidence 56666665542 2467999999999999999999998999999999999887652110
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
..++.++.+|+.++.. ..||.|+++
T Consensus 74 ----------------------~~~v~ii~~D~~~~~~--~~~d~Vv~N 98 (258)
T PRK14896 74 ----------------------AGNVEIIEGDALKVDL--PEFNKVVSN 98 (258)
T ss_pred ----------------------CCCEEEEEeccccCCc--hhceEEEEc
Confidence 1368889999988643 357888876
No 159
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.57 E-value=6.9e-07 Score=78.81 Aligned_cols=98 Identities=15% Similarity=-0.011 Sum_probs=65.3
Q ss_pred CCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||+|||+|.++.+++.+| .+|+++|.++.++..++.-+...
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~---------------------------------- 99 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATL---------------------------------- 99 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh----------------------------------
Confidence 4699999999999999866665 57999999999998776522210
Q ss_pred CCCCCCCCCeeEEecccccccc-CCCceeEEEec-ccccCcchHHHHHHHHHH--hccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATC-FFIDCANNIVSFIETIFN--ILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~-ffidta~n~~~yl~~I~~--~LkpGG~~I 258 (298)
. ..++.+..+|+.+... ..++||+|++. =|-.. -..+.++.|.. +|+|+|+++
T Consensus 100 --~---~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g--~~~~~l~~l~~~~~l~~~~iv~ 156 (199)
T PRK10909 100 --K---AGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKG--LLEETINLLEDNGWLADEALIY 156 (199)
T ss_pred --C---CCcEEEEEchHHHHHhhcCCCceEEEECCCCCCC--hHHHHHHHHHHCCCcCCCcEEE
Confidence 0 0257788899876542 23579998864 11111 12234454444 478888776
No 160
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.57 E-value=6.5e-07 Score=79.27 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=96.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
.++++|..............++||+||=....+.. ..+ ++|+.||+.+.
T Consensus 34 ~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------------------- 83 (219)
T PF11968_consen 34 WLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------------------- 83 (219)
T ss_pred HHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------------------------
Confidence 47777777654322233458999999976554443 233 56888887651
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEecccccccc---CCCceeEEEecccccCc---chHHHHHHHHHHhccCC
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATCFFIDCA---NNIVSFIETIFNILKPG 254 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~ffidta---~n~~~yl~~I~~~LkpG 254 (298)
.-.+.+.||.+.+. +.++||+|+.+.+|.-. ...-+.+..+++.|+|+
T Consensus 84 --------------------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 84 --------------------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred --------------------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 11256778888754 45899999998877644 44557999999999999
Q ss_pred eE-----EEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 255 GI-----WINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 255 G~-----~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
|. ++.+-|+-.+. .+--++.+-+..+++..||..++.
T Consensus 138 g~~~~~~LFlVlP~~Cv~------NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 138 GLSLFPSLFLVLPLPCVT------NSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred CccCcceEEEEeCchHhh------cccccCHHHHHHHHHhCCcEEEEE
Confidence 99 76677776553 367788999999999999998764
No 161
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.2e-06 Score=79.25 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccc
Q psy3185 98 TCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYP 174 (298)
Q Consensus 98 ~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p 174 (298)
..|++=...|.....- .++.+||+.|.|+|.|+..||.. | .+|+..|.-..++..|++-++..
T Consensus 77 iIyPKD~~~I~~~~gi----~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~---------- 142 (256)
T COG2519 77 IIYPKDAGYIVARLGI----SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF---------- 142 (256)
T ss_pred eecCCCHHHHHHHcCC----CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh----------
Confidence 3444444555555442 46889999999999999999974 4 47999999999999998733321
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCC
Q psy3185 175 WVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG 254 (298)
Q Consensus 175 ~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpG 254 (298)
. +. .++.+..||..+...+ +.||+|+ +| .+++-++++.++++||||
T Consensus 143 ---------------------~-----l~--d~v~~~~~Dv~~~~~~-~~vDav~----LD-mp~PW~~le~~~~~Lkpg 188 (256)
T COG2519 143 ---------------------G-----LG--DRVTLKLGDVREGIDE-EDVDAVF----LD-LPDPWNVLEHVSDALKPG 188 (256)
T ss_pred ---------------------c-----cc--cceEEEeccccccccc-cccCEEE----Ec-CCChHHHHHHHHHHhCCC
Confidence 0 11 2377778999887644 4899886 34 467899999999999999
Q ss_pred eEEEEeccc
Q psy3185 255 GIWINLGPL 263 (298)
Q Consensus 255 G~~In~gPl 263 (298)
|.++.+.|.
T Consensus 189 g~~~~y~P~ 197 (256)
T COG2519 189 GVVVVYSPT 197 (256)
T ss_pred cEEEEEcCC
Confidence 999988773
No 162
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.50 E-value=5.1e-07 Score=83.88 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=78.9
Q ss_pred CCeEEEecccCcHHHHHHHHc----------CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccc-cccccccccccccc
Q psy3185 120 DVNILVPGAGLGRLAFEIARR----------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYP-WVQQTDNNILTHHQ 188 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~----------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p-~~~~~s~~~~~~~~ 188 (298)
..+|+..||.||--++-||.. .+.|+|.|+|..+|..|+.-.=...... .+-| |...|=.... ...
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r--~~p~~~~~ryF~~~~-~~~ 192 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELK--TLSPQQLQRYFMRGT-GPH 192 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHh--cCCHHHHHHHccccc-CCC
Confidence 589999999999988887753 2679999999999998876100000000 0000 1110000000 000
Q ss_pred cccccc-CCCCCCCCCCCCCeeEEeccccccc-cCCCceeEEEeccc-cc-CcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 189 TMAVTF-PDINTSDYNDDCDFSMAAGDFLQVY-VHPNKWDCVATCFF-ID-CANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 189 ~r~~~i-pd~~~~~~~~~~~~~~~~gDf~~~~-~~~~~fD~V~t~ff-id-ta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
-..+.+ |.+ ...+.|...|..+.. +..+.||+|++-.. |. ..+.....++.+++.|+|||+++ +|+
T Consensus 193 ~~~~~v~~~l-------r~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~-lG~ 262 (287)
T PRK10611 193 EGLVRVRQEL-------ANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLF-AGH 262 (287)
T ss_pred CceEEEChHH-------HccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEE-EeC
Confidence 000112 111 246788888887642 23589999988432 22 44567889999999999999876 554
No 163
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.50 E-value=1.4e-06 Score=79.28 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=85.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
++..|.+..+ ..+||++|+++|.-+..+|.. +..|+.+|.++.+...|+..+.++.
T Consensus 70 lL~~l~~~~~-------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-------------- 128 (247)
T PLN02589 70 FLNMLLKLIN-------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-------------- 128 (247)
T ss_pred HHHHHHHHhC-------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--------------
Confidence 5555555443 469999999999999999864 4689999999999999887554311
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC-------CCceeEEEecccccCc-chHHHHHHHHHHhc
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH-------PNKWDCVATCFFIDCA-NNIVSFIETIFNIL 251 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~-------~~~fD~V~t~ffidta-~n~~~yl~~I~~~L 251 (298)
+ ..++.+..||+.+.... .++||.|+ ||.. .+-..|++.+.++|
T Consensus 129 ----------------------~--~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iF----iDadK~~Y~~y~~~~l~ll 180 (247)
T PLN02589 129 ----------------------V--AHKIDFREGPALPVLDQMIEDGKYHGTFDFIF----VDADKDNYINYHKRLIDLV 180 (247)
T ss_pred ----------------------C--CCceEEEeccHHHHHHHHHhccccCCcccEEE----ecCCHHHhHHHHHHHHHhc
Confidence 1 14788999998886432 36899874 6644 34568999999999
Q ss_pred cCCeEEEEecccccc
Q psy3185 252 KPGGIWINLGPLLYH 266 (298)
Q Consensus 252 kpGG~~In~gPl~y~ 266 (298)
+|||++| +.-.+|+
T Consensus 181 ~~GGviv-~DNvl~~ 194 (247)
T PLN02589 181 KVGGVIG-YDNTLWN 194 (247)
T ss_pred CCCeEEE-EcCCCCC
Confidence 9999987 3445665
No 164
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.8e-06 Score=80.07 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=73.7
Q ss_pred HHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 105 ~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+.|.+.+|.. .+.+|||+|||.|-++..+|+..- .++-+|.|...++.|+.-+.. |.
T Consensus 148 ~lLl~~l~~~----~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----N~------------- 206 (300)
T COG2813 148 RLLLETLPPD----LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----NG------------- 206 (300)
T ss_pred HHHHHhCCcc----CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----cC-------------
Confidence 4566666643 345999999999999999999964 799999999999999873211 10
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc----CcchH-HHHHHHHHHhccCCeEE
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID----CANNI-VSFIETIFNILKPGGIW 257 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid----ta~n~-~~yl~~I~~~LkpGG~~ 257 (298)
+ .+..+...|..+- -.++||.|+|+==++ +..++ .+.|+.-.+.|++||-+
T Consensus 207 --------------------~--~~~~v~~s~~~~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 207 --------------------V--ENTEVWASNLYEP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred --------------------C--CccEEEEeccccc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEE
Confidence 0 1113334432221 134999999983223 33332 36899999999999965
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.49 E-value=1.1e-06 Score=79.12 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=34.5
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~ 156 (298)
++..|||+|||||.++..++++|. .|+|+|.|+.|+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 467899999999999999999986 59999999998875
No 166
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.48 E-value=3.3e-06 Score=76.82 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=99.5
Q ss_pred hhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHh
Q psy3185 86 RDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 86 RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+|+..=...-+..|.+=+..|.....- +++.+||+-|.|+|-|+..||+. | ..|...|+....+..|+.=+.
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i----~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~ 86 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDI----RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE 86 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT------TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCC----CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH
Confidence 4566655445566777777777776653 46889999999999999999986 3 479999999999988876322
Q ss_pred hhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC---CCceeEEEecccccCcch
Q psy3185 163 KCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH---PNKWDCVATCFFIDCANN 239 (298)
Q Consensus 163 ~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~---~~~fD~V~t~ffidta~n 239 (298)
. + .+ ..++.+..+|..+--++ ++.+|+|+ || .++
T Consensus 87 ~------~------------------------------gl--~~~v~~~~~Dv~~~g~~~~~~~~~Davf----LD-lp~ 123 (247)
T PF08704_consen 87 R------H------------------------------GL--DDNVTVHHRDVCEEGFDEELESDFDAVF----LD-LPD 123 (247)
T ss_dssp H------T------------------------------TC--CTTEEEEES-GGCG--STT-TTSEEEEE----EE-SSS
T ss_pred H------c------------------------------CC--CCCceeEecceecccccccccCcccEEE----Ee-CCC
Confidence 1 0 01 14788888888643221 36788875 45 466
Q ss_pred HHHHHHHHHHhc-cCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 240 IVSFIETIFNIL-KPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 240 ~~~yl~~I~~~L-kpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+-++|..+.++| ||||.++.+.|-.-. .....+.+++.||..+.
T Consensus 124 Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ-------------v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 124 PWEAIPHAKRALKKPGGRICCFSPCIEQ-------------VQKTVEALREHGFTDIE 168 (247)
T ss_dssp GGGGHHHHHHHE-EEEEEEEEEESSHHH-------------HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCHHH-------------HHHHHHHHHHCCCeeeE
Confidence 789999999999 899999988774211 33445566678987653
No 167
>KOG1269|consensus
Probab=98.48 E-value=4e-07 Score=87.17 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=82.2
Q ss_pred CCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
..+++|.|||.|....+++..+ ..++|++.+..-+..++...-+ . ++
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~---------~l---------------------- 158 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-A---------YL---------------------- 158 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-H---------Hh----------------------
Confidence 4589999999999999999875 6799999999987766542111 0 00
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. ....++.+||..-++++++||+|-+.-...++++....+++|++++||||+||+
T Consensus 159 ----~--~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 159 ----D--NKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred ----h--hhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 1 122347888888888999999998887778899999999999999999999996
No 168
>KOG1499|consensus
Probab=98.46 E-value=8.4e-07 Score=83.40 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=72.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++..|||+|||||-|+..-|+.|.. |.|+|.|.-+ ..|+.+.+. |.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~----N~~--------------------------- 107 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD----NGL--------------------------- 107 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh----cCc---------------------------
Confidence 3679999999999999999999975 9999999866 666655432 111
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
..-+.+..|...++..+.++.|+|++-+ |+-.-.-+..+|-.=-+.|+|||...
T Consensus 108 -------~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 -------EDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -------cceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1246677777777654568999999853 33222223346666668999999875
No 169
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.45 E-value=1.1e-07 Score=93.07 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=87.3
Q ss_pred HHHHHHhhCCCCCCCCCCC-eEEEecccCcHHHHHHHHcCCeEEEe---eCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 103 IISEILARFPPETINPKDV-NILVPGAGLGRLAFEIARRGYVCQGN---EFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~-~VLdpGcG~Grla~ela~~G~~v~g~---D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
-++.|.+.+|.... .... .+||+|||+|.++..|..++-.+..+ |-.+..+. +++.+.
T Consensus 101 Yid~i~~~~~~~~~-~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvq---faleRG-------------- 162 (506)
T PF03141_consen 101 YIDQIAEMIPLIKW-GGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQ---FALERG-------------- 162 (506)
T ss_pred HHHHHHHHhhcccc-CCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhh---hhhhcC--------------
Confidence 45667776663111 2233 47999999999999999998764433 33333332 323221
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec-ccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-FFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
+|-+. -+.|. ..+++++++||.|-+. ..+.+..+---||-++.|+|+|||+|
T Consensus 163 ---------------vpa~~-----------~~~~s-~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyf 215 (506)
T PF03141_consen 163 ---------------VPAMI-----------GVLGS-QRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYF 215 (506)
T ss_pred ---------------cchhh-----------hhhcc-ccccCCccchhhhhcccccccchhcccceeehhhhhhccCceE
Confidence 11110 01111 2345578999998665 34555555456999999999999999
Q ss_pred EEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 258 INLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 258 In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
+-.||-.|...+ ....--++++..+.++.-|+.+.
T Consensus 216 v~S~ppv~~r~~----~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 216 VLSGPPVYQRTD----EDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred EecCCcccccch----HHHHHHHHHHHHHHHHHHHHHhe
Confidence 988887772110 11122356677777776666543
No 170
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.45 E-value=1.3e-06 Score=76.84 Aligned_cols=101 Identities=23% Similarity=0.246 Sum_probs=70.7
Q ss_pred CCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
...+||+|||.|+...++|+. ...+.|+|.+...+..+.....+ .
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~---~------------------------------ 64 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK---R------------------------------ 64 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH---H------------------------------
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh---h------------------------------
Confidence 348999999999999999987 57799999999988766542221 0
Q ss_pred CCCCCCCCCCeeEEeccccccc---cCCCceeEEEeccc---cc--Ccch---HHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFF---ID--CANN---IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ff---id--ta~n---~~~yl~~I~~~LkpGG~~In 259 (298)
. ..|+.++.+|+..+. .++++.|.|...|= -. +... -.++++.++++|||||.+--
T Consensus 65 ---~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 65 ---G---LKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ---T---TSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred ---c---ccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 0 148889999987743 35689998877651 11 1111 13799999999999998853
No 171
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.42 E-value=2.2e-06 Score=77.10 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=72.2
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+|||+|+|.|.++..++++ +-+++..|. +.++..++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------------------------------------- 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------------------------------------- 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------------------------------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------------------------------------
Confidence 3468999999999999999988 567899998 666554432
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCC--eEEEEeccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPG--GIWINLGPL 263 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpG--G~~In~gPl 263 (298)
..++.++.|||.+-. +. +|+|+...++| ..+.....|+++++.|+|| |.++.+.++
T Consensus 142 --------~~rv~~~~gd~f~~~--P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 142 --------ADRVEFVPGDFFDPL--PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp --------TTTEEEEES-TTTCC--SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred --------ccccccccccHHhhh--cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 147899999998432 33 99999888886 3455778999999999999 999866554
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.1e-06 Score=76.20 Aligned_cols=70 Identities=21% Similarity=0.141 Sum_probs=55.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.+..|+|+|||||+|+.-.+-.| ..|+|+|..+.++.+++.-.++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~---------------------------------- 90 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE---------------------------------- 90 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----------------------------------
Confidence 46689999999999999999999 5699999999999998872211
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
..+++.++.+|...+ .+.+|.|+++
T Consensus 91 ------l~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 91 ------LLGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred ------hCCceEEEEcchhhc---CCccceEEEC
Confidence 014788888887776 4678877765
No 173
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.40 E-value=3.6e-06 Score=73.60 Aligned_cols=100 Identities=16% Similarity=0.009 Sum_probs=66.3
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+|||++||+|.++.+++.+|. .|+++|.+..++..++.-+....
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~--------------------------------- 96 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK--------------------------------- 96 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC---------------------------------
Confidence 56899999999999999999997 69999999999987765322110
Q ss_pred CCCCCCCCCeeEEecccccccc---CCC-ceeEEEec-ccccCcchHHHHHHHHH--HhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV---HPN-KWDCVATC-FFIDCANNIVSFIETIF--NILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~---~~~-~fD~V~t~-ffidta~n~~~yl~~I~--~~LkpGG~~In 259 (298)
+ ..++.+..+|...... ..+ .||+|+.- .|-. ......++.+. .+|++||++|.
T Consensus 97 ---~--~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 97 ---S--GEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN--GALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred ---C--cccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEE
Confidence 0 1256778888755421 122 47777653 2211 12233444443 47889998873
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.40 E-value=1.7e-06 Score=80.73 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=64.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++.+|||+|||+|.++..|++.+..|+|+|++..|+..++..+...
T Consensus 24 i~~~Iv~~~~~----~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~------------------ 81 (294)
T PTZ00338 24 VLDKIVEKAAI----KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS------------------ 81 (294)
T ss_pred HHHHHHHhcCC----CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc------------------
Confidence 55555555432 24679999999999999999999989999999999999887633210
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC 231 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ 231 (298)
....++.++.+|+.+... ..||+|+++
T Consensus 82 --------------------~~~~~v~ii~~Dal~~~~--~~~d~VvaN 108 (294)
T PTZ00338 82 --------------------PLASKLEVIEGDALKTEF--PYFDVCVAN 108 (294)
T ss_pred --------------------CCCCcEEEEECCHhhhcc--cccCEEEec
Confidence 001478899999988643 478988765
No 175
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.40 E-value=9.4e-06 Score=78.22 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=69.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.+|||+|||+|.++..+|..|..|+|+|.|+.++..++.-... .
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~---~-------------------------------- 278 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQM---L-------------------------------- 278 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHH---c--------------------------------
Confidence 46899999999999999999998999999999999988762211 0
Q ss_pred CCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcch--HHHHHHHHHHhccCCeEEE-Eecc
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWI-NLGP 262 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n--~~~yl~~I~~~LkpGG~~I-n~gP 262 (298)
.+ .++.+..+|+.++... .++||+|+. |.... ....++.|.+ ++|+++.+ ...|
T Consensus 279 -~~---~~~~~~~~d~~~~~~~~~~~~D~vi~----DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p 336 (374)
T TIGR02085 279 -GL---DNLSFAALDSAKFATAQMSAPELVLV----NPPRRGIGKELCDYLSQ-MAPKFILYSSCNA 336 (374)
T ss_pred -CC---CcEEEEECCHHHHHHhcCCCCCEEEE----CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCH
Confidence 01 2678899998765422 256998765 32211 2345566654 68887664 3444
No 176
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.39 E-value=2.2e-06 Score=78.07 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+..+. .++.+|||+|||+|.++..|++++..|+|+|.++.|+..++.
T Consensus 17 i~~~i~~~~~~----~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~ 69 (253)
T TIGR00755 17 VIQKIVEAANV----LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRK 69 (253)
T ss_pred HHHHHHHhcCC----CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHH
Confidence 56666665542 246799999999999999999999899999999999987765
No 177
>KOG1661|consensus
Probab=98.33 E-value=2.6e-06 Score=74.99 Aligned_cols=123 Identities=20% Similarity=0.235 Sum_probs=85.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccc
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYP 174 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p 174 (298)
.|..+++.|..++. ++.+.|++|+|+|.|+--+|+. |-.+.|||.=+..+..+..-+++-
T Consensus 68 mha~~le~L~~~L~------pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~---------- 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQ------PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD---------- 131 (237)
T ss_pred HHHHHHHHHHHhhc------cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh----------
Confidence 35567888887664 4789999999999999999865 445699999999999887754431
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCC
Q psy3185 175 WVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG 254 (298)
Q Consensus 175 ~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpG 254 (298)
+. =|+. . +.-...+++++.||-...+.+...||+|..-- ...+..+++-..||||
T Consensus 132 -i~----------------~~e~-~-~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGA------aa~~~pq~l~dqL~~g 186 (237)
T KOG1661|consen 132 -IT----------------TSES-S-SKLKRGELSIVVGDGRKGYAEQAPYDAIHVGA------AASELPQELLDQLKPG 186 (237)
T ss_pred -cc----------------Cchh-h-hhhccCceEEEeCCccccCCccCCcceEEEcc------CccccHHHHHHhhccC
Confidence 10 0111 0 11123688999999999998899999987652 1223345555678887
Q ss_pred eEEE-Eecc
Q psy3185 255 GIWI-NLGP 262 (298)
Q Consensus 255 G~~I-n~gP 262 (298)
|.++ -.||
T Consensus 187 Grllip~~~ 195 (237)
T KOG1661|consen 187 GRLLIPVGQ 195 (237)
T ss_pred CeEEEeecc
Confidence 7665 4554
No 178
>PLN02823 spermine synthase
Probab=98.33 E-value=3.2e-06 Score=80.33 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=76.2
Q ss_pred CCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+||++|+|.|.++.++.+.. -.|+.+|+++.++..++.-+. +.+.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~------------~~~~------------------- 152 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLT------------VNRE------------------- 152 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcc------------cccc-------------------
Confidence 5689999999999999998863 469999999999999876321 1000
Q ss_pred CCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccC-----cchH--HHHHH-HHHHhccCCeEEE-Eecc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDC-----ANNI--VSFIE-TIFNILKPGGIWI-NLGP 262 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidt-----a~n~--~~yl~-~I~~~LkpGG~~I-n~gP 262 (298)
.+ ...++.++.+|...+.. .+++||+|+.-.+ |. +..+ .++++ .+.+.|+|||+++ +.++
T Consensus 153 ---~~-~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 153 ---AF-CDKRLELIINDARAELEKRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ---cc-cCCceEEEEChhHHHHhhCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 00 12478999999887653 3478999886432 32 1112 36887 8999999999986 4443
No 179
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.30 E-value=9.5e-06 Score=63.44 Aligned_cols=98 Identities=22% Similarity=0.272 Sum_probs=63.7
Q ss_pred EEEecccCcHHH--HHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 123 ILVPGAGLGRLA--FEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 123 VLdpGcG~Grla--~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
+||+|||+|... ..+...+..++|+|.|..|+..++..... ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~---------------------------------- 96 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AG---------------------------------- 96 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC----------------------------------
Confidence 999999999965 33333345899999999999874331100 00
Q ss_pred CCCCCCCeeEEeccccc--cccCC-CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 201 DYNDDCDFSMAAGDFLQ--VYVHP-NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~--~~~~~-~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
...+.+..+|... +.... ..||++.+...++... ....+..+.+.|+|+|.++..
T Consensus 97 ----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 97 ----LGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred ----CCceEEEEeccccCCCCCCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEE
Confidence 0014455555554 33334 4899884333333333 778999999999999998754
No 180
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.29 E-value=7.7e-06 Score=73.04 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
+..+||++|.++|.=+..+|.. . -.++.+|.+++|...|+..+.+..
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag------------------------------ 108 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG------------------------------ 108 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC------------------------------
Confidence 3579999999999999999875 2 369999999999999988655421
Q ss_pred CCCCCCCCCCCCeeEEe-ccccccccC--CCceeEEEecccccCcc-hHHHHHHHHHHhccCCeEEE
Q psy3185 196 DINTSDYNDDCDFSMAA-GDFLQVYVH--PNKWDCVATCFFIDCAN-NIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~-gDf~~~~~~--~~~fD~V~t~ffidta~-n~~~yl~~I~~~LkpGG~~I 258 (298)
-...+.+.. ||..+.... .++||.| |||..+ +-.+|++.+.++|+|||+.|
T Consensus 109 --------~~~~i~~~~~gdal~~l~~~~~~~fDli----FIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 109 --------VDDRIELLLGGDALDVLSRLLDGSFDLV----FIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred --------CcceEEEEecCcHHHHHHhccCCCccEE----EEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 012466666 688776543 5899987 578554 45789999999999999998
No 181
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.28 E-value=3.9e-06 Score=76.35 Aligned_cols=106 Identities=20% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|-|.|..+.++.+.. -+|+.+|+++.++..|+.-+......
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~----------------------------- 126 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG----------------------------- 126 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-----------------------------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-----------------------------
Confidence 36799999999999999999885 47999999999999988743321100
Q ss_pred CCCCCCCCCCCeeEEeccccccccC-CC-ceeEEEeccccc--Ccch--HHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH-PN-KWDCVATCFFID--CANN--IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~-~~-~fD~V~t~ffid--ta~n--~~~yl~~I~~~LkpGG~~In 259 (298)
....++.++.+|...+... .+ +||+|+.-.+-. .+.+ -.++++.+.++|+|||+++.
T Consensus 127 ------~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 127 ------LDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp ------GGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 0125899999998877543 34 899987532211 2222 25899999999999999973
No 182
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.26 E-value=8.3e-06 Score=70.67 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe-----------EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV-----------CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHH 187 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~-----------v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~ 187 (298)
++..||||=||+|.+..|-|..+.. +.|.|++..|+..|+.-+.+..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag---------------------- 85 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG---------------------- 85 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----------------------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----------------------
Confidence 4679999999999999999887644 5699999999998887433210
Q ss_pred cccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--ccc--cCcc---hH-HHHHHHHHHhccCCeEEEE
Q psy3185 188 QTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FFI--DCAN---NI-VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 188 ~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ffi--dta~---n~-~~yl~~I~~~LkpGG~~In 259 (298)
....+.+..+||.++...++++|+|+|. |-. .... ++ ..+++.+.++|+|..+++.
T Consensus 86 ----------------~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 86 ----------------VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp -----------------CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred ----------------cCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 0135778999999998667899999996 332 2222 22 2467888899999666664
No 183
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.21 E-value=2.8e-05 Score=73.45 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=37.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l 161 (298)
.+.+|||+|||+|-++--|+.+ |+.++|+|+++.++..|+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4689999999999888888766 789999999999999998743
No 184
>PRK00536 speE spermidine synthase; Provisional
Probab=98.20 E-value=2.1e-05 Score=72.21 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=70.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+||++|-|-|..+.|+.+..-+|+-+|+...|+..++.-+. .++.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP------------~~~~-------------------- 119 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFP------------HFHE-------------------- 119 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCH------------HHHH--------------------
Confidence 46799999999999999999986699999999999999886322 1111
Q ss_pred CCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.+ ...++.++. .+.+ ...++||+|+.=- .. -.++.+.++++|+|||+++.
T Consensus 120 --~~-~DpRv~l~~-~~~~--~~~~~fDVIIvDs----~~-~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 120 --VK-NNKNFTHAK-QLLD--LDIKKYDLIICLQ----EP-DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred --hh-cCCCEEEee-hhhh--ccCCcCCEEEEcC----CC-ChHHHHHHHHhcCCCcEEEE
Confidence 00 123565554 1211 1247899987531 11 15788999999999999996
No 185
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.20 E-value=6e-05 Score=69.64 Aligned_cols=161 Identities=17% Similarity=0.180 Sum_probs=100.8
Q ss_pred CChHHHhhhhHHHHHH-HHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C---CeEEEeeCCHHHHHHHHHHHhhhh
Q psy3185 91 EGSEERKTCYEPIISE-ILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G---YVCQGNEFSLFMLFASNFILNKCR 165 (298)
Q Consensus 91 ~g~~ER~~~~~~i~~~-l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G---~~v~g~D~S~~Ml~~a~~~l~~~~ 165 (298)
.|-.+|+.-....+.. +..+.. ...+.+|||+.||.||..++.... . -+|.-+|+|+.-+...+.+....
T Consensus 110 rGIR~Rk~~l~~~i~~ai~~L~~----~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~- 184 (311)
T PF12147_consen 110 RGIRQRKVHLEELIRQAIARLRE----QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER- 184 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-
Confidence 3556776544444332 332222 135789999999999999997765 2 35999999999999888764320
Q ss_pred hccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccc---cCCCceeEEEecccccCc---ch
Q psy3185 166 EKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFIDCA---NN 239 (298)
Q Consensus 166 ~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffidta---~n 239 (298)
.+ ..-+.|..+|..+.. ..+-..++++.+=..+-. .-
T Consensus 185 -----------------------------------gL--~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~l 227 (311)
T PF12147_consen 185 -----------------------------------GL--EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDL 227 (311)
T ss_pred -----------------------------------CC--ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHH
Confidence 01 123367777754431 112345644433222222 22
Q ss_pred HHHHHHHHHHhccCCeEEEEec-cccccccCC----------CCCCccC--CCHHHHHHHHHhCCCEEE
Q psy3185 240 IVSFIETIFNILKPGGIWINLG-PLLYHYSNM----------LNEDSIE--PSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 240 ~~~yl~~I~~~LkpGG~~In~g-Pl~y~~~~~----------~~~~~~~--ls~eEl~~~~~~~GF~i~ 295 (298)
+...+.-+.+++.|||++|--| | ||.... .+.+.+. =|..|+.++++++||+-+
T Consensus 228 v~~sl~gl~~al~pgG~lIyTgQP--wHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 228 VRRSLAGLARALEPGGYLIYTGQP--WHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCC--CCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 5568999999999999999544 3 553321 1123333 589999999999999743
No 186
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.18 E-value=1.2e-05 Score=69.26 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=61.9
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
.+.+||++|||+|-.+..+|+. +..|+..|..+ -+...+.-+.. |..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~----N~~-------------------------- 93 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL----NGS-------------------------- 93 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT----T----------------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh----ccc--------------------------
Confidence 4679999999999999999999 56899999999 55544431111 100
Q ss_pred CCCCCCCCCCCeeEEeccccc-c---ccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQ-V---YVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~-~---~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.+..-|+.+ . ..+.++||+|+.+-.+-..+.....+++|.++|+|+|.++
T Consensus 94 ------~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 94 ------LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp ------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEE
T ss_pred ------cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEE
Confidence 001233444444322 1 1235789999988666566778899999999999988754
No 187
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.18 E-value=2.3e-05 Score=72.65 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
+..++..+.|..... +..+||++|-|.|..+.++.+.. -.++.+|+.+.++..|+.-+.
T Consensus 61 ~yhEml~h~~~~ah~-~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~------------------ 121 (282)
T COG0421 61 IYHEMLAHVPLLAHP-NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLP------------------ 121 (282)
T ss_pred HHHHHHHhchhhhCC-CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhcc------------------
Confidence 444444454422111 22499999999999999999997 569999999999999887322
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC-CCceeEEEeccc--ccCcchH--HHHHHHHHHhccCCe
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFF--IDCANNI--VSFIETIFNILKPGG 255 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ff--idta~n~--~~yl~~I~~~LkpGG 255 (298)
...... . ..++.++.+|-.++... .++||+|+.--. .-.++++ .+|++.++++|+|+|
T Consensus 122 ---------------~~~~~~-~-dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~G 184 (282)
T COG0421 122 ---------------EPSGGA-D-DPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDG 184 (282)
T ss_pred ---------------Cccccc-C-CCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCc
Confidence 111000 1 25888999998887653 348999875321 1233443 579999999999999
Q ss_pred EEEE
Q psy3185 256 IWIN 259 (298)
Q Consensus 256 ~~In 259 (298)
+++.
T Consensus 185 i~v~ 188 (282)
T COG0421 185 IFVA 188 (282)
T ss_pred EEEE
Confidence 9984
No 188
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.18 E-value=1.8e-05 Score=73.89 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=71.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH---------cCCeEEEeeCCHHHHHHHHHHHh-hhhhcccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR---------RGYVCQGNEFSLFMLFASNFILN-KCREKNVYKI 172 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~---------~G~~v~g~D~S~~Ml~~a~~~l~-~~~~~~~~~i 172 (298)
|.+.+.+.... .++.+||||.||+|.+..++.+ ....+.|+|+++.++..|+.-+- +...
T Consensus 34 i~~l~~~~~~~----~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~------ 103 (311)
T PF02384_consen 34 IVDLMVKLLNP----KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID------ 103 (311)
T ss_dssp HHHHHHHHHTT-----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH------
T ss_pred HHHHHHhhhhc----cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc------
Confidence 45555555442 2456899999999999888876 35679999999999887754211 0000
Q ss_pred ccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccC--CCceeEEEec--cccc-------------
Q psy3185 173 YPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH--PNKWDCVATC--FFID------------- 235 (298)
Q Consensus 173 ~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~--~~~fD~V~t~--ffid------------- 235 (298)
..+..+..+|...-... ..+||+|++. |-..
T Consensus 104 --------------------------------~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~ 151 (311)
T PF02384_consen 104 --------------------------------NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERF 151 (311)
T ss_dssp --------------------------------CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCC
T ss_pred --------------------------------cccccccccccccccccccccccccccCCCCccccccccccccccccc
Confidence 01234566665443322 3678888775 2211
Q ss_pred ------CcchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 236 ------CANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 236 ------ta~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
+...-..++..+.+.||+||..+.+-|-
T Consensus 152 ~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 152 KKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp TTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 0111235889999999999998766563
No 189
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.06 E-value=4.5e-05 Score=70.22 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=77.8
Q ss_pred CCCeEEEecccCcHHHHHHHHc-----------CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccc-ccc--ccccccc
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-----------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYP-WVQ--QTDNNIL 184 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-----------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p-~~~--~~s~~~~ 184 (298)
...+|..+||+||--++-||.. .++|.|.|+|..+|..|+. -+|| -.. ..+....
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~-----------G~Y~~~~~~~~~~~~~~ 164 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA-----------GIYPSRELLRGLPPELL 164 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc-----------CCCChhHhhccCCHHHH
Confidence 4789999999999987777642 2579999999999998874 1233 000 0000000
Q ss_pred ---cccccc-ccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEE
Q psy3185 185 ---THHQTM-AVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 185 ---~~~~~r-~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....-- .++|-+ .+ ...+.|...|...-..-.+.||+|+|--++= ..+-....++.++..|+|||+++
T Consensus 165 ~ryF~~~~~~~y~v~~----~i--r~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lf 238 (268)
T COG1352 165 RRYFERGGDGSYRVKE----EL--RKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLF 238 (268)
T ss_pred hhhEeecCCCcEEECh----HH--hcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEE
Confidence 000000 122211 00 2467778888766543468899998743221 33445789999999999999987
Q ss_pred Eecc
Q psy3185 259 NLGP 262 (298)
Q Consensus 259 n~gP 262 (298)
+|+
T Consensus 239 -lG~ 241 (268)
T COG1352 239 -LGH 241 (268)
T ss_pred -Ecc
Confidence 454
No 190
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.04 E-value=3.1e-05 Score=74.83 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=68.6
Q ss_pred CCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.+|||++||+|-++..+|.. |. .|+++|.++.++..++.-+.. |.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N~---------------------------- 105 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----NG---------------------------- 105 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----hC----------------------------
Confidence 468999999999999999876 43 799999999999887752211 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+ .+..+..+|+..+....++||+|+.-=| -....+++...+.++|||++.
T Consensus 106 ----~---~~~~v~~~Da~~~l~~~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 106 ----L---ENEKVFNKDANALLHEERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred ----C---CceEEEhhhHHHHHhhcCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEE
Confidence 0 1345788887665432467998875322 234578888667789999885
No 191
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.98 E-value=6e-05 Score=75.66 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=36.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcC----------CeEEEeeCCHHHHHHHHHHHh
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG----------YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G----------~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+.+|||||||+|.+...++... -+++|+|+++..+..++..+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 35699999999999999887642 358999999999988876543
No 192
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.97 E-value=0.00015 Score=66.98 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=84.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQ 178 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~ 178 (298)
.++.+|....|. -.+.+|||.|||.|--++..... -.+++++|.|..|+..++.++....... ..+
T Consensus 20 ~vl~El~~r~p~----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~---~~~---- 88 (274)
T PF09243_consen 20 RVLSELRKRLPD----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR---NAE---- 88 (274)
T ss_pred HHHHHHHHhCcC----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc---cch----
Confidence 388888887763 24679999999999877766553 2469999999999999998765321100 000
Q ss_pred ccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCc--chHHHHHHHHHHhccCCeE
Q psy3185 179 TDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 179 ~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~ 256 (298)
.......++..+ ...|+|++.|.|... ....++++.+.+.+.+ +
T Consensus 89 ----------------------------~~~~~~~~~~~~----~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~ 134 (274)
T PF09243_consen 89 ----------------------------WRRVLYRDFLPF----PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--V 134 (274)
T ss_pred ----------------------------hhhhhhcccccC----CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--c
Confidence 000111222222 223999999887644 4456677777777766 6
Q ss_pred EEEecccc-ccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 257 WINLGPLL-YHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 257 ~In~gPl~-y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
+|-+-|=. -+|. ..-++++.+.+.|+.+.
T Consensus 135 LVlVEpGt~~Gf~----------~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 135 LVLVEPGTPAGFR----------RIAEARDQLLEKGAHVV 164 (274)
T ss_pred EEEEcCCChHHHH----------HHHHHHHHHhhCCCceE
Confidence 66554410 0111 14556666666666654
No 193
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.96 E-value=0.00015 Score=67.79 Aligned_cols=130 Identities=17% Similarity=0.070 Sum_probs=82.9
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccc
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTD 180 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s 180 (298)
++++.+.+.. .++..+||.+||.|..+..+++.+ ..|+|+|.++.|+..++..+..
T Consensus 8 l~Evl~~L~~----~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----------------- 66 (296)
T PRK00050 8 LDEVVDALAI----KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----------------- 66 (296)
T ss_pred HHHHHHhhCC----CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----------------
Confidence 3455555432 246799999999999999999884 6799999999999998763321
Q ss_pred ccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCC--ceeEEE-----ecccccCcchHHHHHHHHHHhc
Q psy3185 181 NNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPN--KWDCVA-----TCFFIDCANNIVSFIETIFNIL 251 (298)
Q Consensus 181 ~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~--~fD~V~-----t~ffidta~n~~~yl~~I~~~L 251 (298)
..++.++.+||.++.. +.+ ++|+|+ |++-||.++-
T Consensus 67 ------------------------~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvSs~Qld~~~R------------ 110 (296)
T PRK00050 67 ------------------------FGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGVSSPQLDDAER------------ 110 (296)
T ss_pred ------------------------CCcEEEEeCCHHHHHHHHHcCCCccCEEEECCCccccccCCCcC------------
Confidence 1378889999987642 112 677764 4455554432
Q ss_pred cCCeEE-EEeccccccccCCCCCC----ccCCCHHHHHHHHHhCCCE
Q psy3185 252 KPGGIW-INLGPLLYHYSNMLNED----SIEPSYEVVKQVIQGLGFV 293 (298)
Q Consensus 252 kpGG~~-In~gPl~y~~~~~~~~~----~~~ls~eEl~~~~~~~GF~ 293 (298)
|.= -.-|||---........ --.++.++|..++..+|-+
T Consensus 111 ---GFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~i~~~yGee 154 (296)
T PRK00050 111 ---GFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELARIFKEYGEE 154 (296)
T ss_pred ---CcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHHHHHHhcCc
Confidence 221 12355532221110000 1137899999999998854
No 194
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=5.4e-05 Score=69.26 Aligned_cols=84 Identities=18% Similarity=0.115 Sum_probs=63.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.+.+.... .++..||++|+|+|.|+..|++++..|+|+|+...|+..-+....
T Consensus 18 v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~-------------------- 73 (259)
T COG0030 18 VIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA-------------------- 73 (259)
T ss_pred HHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--------------------
Confidence 55555555442 236799999999999999999999999999999999876554211
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCC-ceeEEEec
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN-KWDCVATC 231 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~-~fD~V~t~ 231 (298)
...++.++.||+..+..+.- .++.||++
T Consensus 74 ---------------------~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 74 ---------------------PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred ---------------------cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 12589999999998865432 56766654
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.95 E-value=5.9e-05 Score=66.60 Aligned_cols=113 Identities=20% Similarity=0.254 Sum_probs=70.8
Q ss_pred hccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHHHHHHHHHHHhhhh
Q psy3185 88 WSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLFMLFASNFILNKCR 165 (298)
Q Consensus 88 Ws~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~Ml~~a~~~l~~~~ 165 (298)
||..-..||. .|. +.+. ++..|||+-||.|-++..+|+ ++..|.|+|+++..+...+.-.
T Consensus 84 fs~rl~~Er~----Ri~----~~v~------~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni---- 145 (200)
T PF02475_consen 84 FSPRLSTERR----RIA----NLVK------PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENI---- 145 (200)
T ss_dssp --GGGHHHHH----HHH----TC--------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHH----
T ss_pred EccccHHHHH----HHH----hcCC------cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHH----
Confidence 8887677885 233 2232 367999999999999999999 6778999999998776554311
Q ss_pred hccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHH
Q psy3185 166 EKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIE 245 (298)
Q Consensus 166 ~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~ 245 (298)
..| . + ...+....||..++.. .+.+|-|+... .+.-.+|+.
T Consensus 146 ~lN---------------------------k-----v--~~~i~~~~~D~~~~~~-~~~~drvim~l----p~~~~~fl~ 186 (200)
T PF02475_consen 146 RLN---------------------------K-----V--ENRIEVINGDAREFLP-EGKFDRVIMNL----PESSLEFLD 186 (200)
T ss_dssp HHT---------------------------T--------TTTEEEEES-GGG----TT-EEEEEE------TSSGGGGHH
T ss_pred HHc---------------------------C-----C--CCeEEEEcCCHHHhcC-ccccCEEEECC----hHHHHHHHH
Confidence 111 0 1 1367889999988865 78999777654 222346888
Q ss_pred HHHHhccCCeEE
Q psy3185 246 TIFNILKPGGIW 257 (298)
Q Consensus 246 ~I~~~LkpGG~~ 257 (298)
....++|+||+.
T Consensus 187 ~~~~~~~~~g~i 198 (200)
T PF02475_consen 187 AALSLLKEGGII 198 (200)
T ss_dssp HHHHHEEEEEEE
T ss_pred HHHHHhcCCcEE
Confidence 899999998854
No 196
>KOG1500|consensus
Probab=97.92 E-value=0.00011 Score=69.14 Aligned_cols=99 Identities=23% Similarity=0.286 Sum_probs=70.4
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.+.-|||+|||.|-|++..|..|. +|.++|.|. |...|+.+... |.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~----N~---------------------------- 223 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS----NN---------------------------- 223 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc----CC----------------------------
Confidence 466899999999999999999997 599999985 77777765431 00
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEec---ccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC---FFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~---ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+ ..+++++.|...++. -+++.|++++- +.|-...-+..|+-. .+.|||.|...
T Consensus 224 ----~--~~rItVI~GKiEdie-LPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMf 279 (517)
T KOG1500|consen 224 ----L--ADRITVIPGKIEDIE-LPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMF 279 (517)
T ss_pred ----c--cceEEEccCcccccc-CchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCccc
Confidence 0 135667777776664 36799999874 344444444556544 49999999873
No 197
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.91 E-value=0.00018 Score=61.44 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=73.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC---eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY---VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~---~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.+.-||++|.|||-++..+-++|. +++++|+|......-+.. +|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~---------------------------------~p 94 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL---------------------------------YP 94 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh---------------------------------CC
Confidence 567899999999999999999985 599999999987654431 22
Q ss_pred CCCCCCCCCCCCeeEEeccccccc-----cCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEE--eccc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY-----VHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWIN--LGPL 263 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~-----~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In--~gPl 263 (298)
...+..||...+- .....||+|+|+.=+- ...--.++++.....|.+||.++- .||+
T Consensus 95 -----------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 95 -----------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred -----------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 2335666665543 1346899999985322 223346899999999999999874 4653
No 198
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.88 E-value=9.4e-05 Score=66.58 Aligned_cols=99 Identities=22% Similarity=0.301 Sum_probs=72.5
Q ss_pred CeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
..+|++|||.|+...++|++. ..+.|+|....-+..+.. +..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~---k~~~~------------------------------- 95 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALK---KIKEL------------------------------- 95 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHH---HHHHc-------------------------------
Confidence 589999999999999999995 469999999887765543 22211
Q ss_pred CCCCCCCCCeeEEeccccccc---cCCCceeEEEeccccc------C-cchH--HHHHHHHHHhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVY---VHPNKWDCVATCFFID------C-ANNI--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~---~~~~~fD~V~t~ffid------t-a~n~--~~yl~~I~~~LkpGG~~In 259 (298)
.+ .|+.+..+|..++. .++++.|-|.-+|= | + -.-+ ..+++.+.++|||||.+-.
T Consensus 96 --~l---~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP-DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 96 --GL---KNLRLLCGDAVEVLDYLIPDGSLDKIYINFP-DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred --CC---CcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-CCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 11 28889999977653 35569998887762 2 1 1111 3799999999999998853
No 199
>KOG3987|consensus
Probab=97.87 E-value=1.1e-05 Score=71.11 Aligned_cols=94 Identities=22% Similarity=0.213 Sum_probs=70.9
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
..+.++||+|+|-|-++..++...-+|.|.|.|..|...-+. + .+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k---k-----~y--------------------------- 155 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK---K-----NY--------------------------- 155 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh---c-----CC---------------------------
Confidence 346799999999999999888877789999999999875443 1 01
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccC-CeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKP-GGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~Lkp-GG~~In 259 (298)
++ +..- +....+-+||+|.+.-.+|...+....++.|+.+|.| +|..|.
T Consensus 156 ---------nV-l~~~---ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 156 ---------NV-LTEI---EWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ---------ce-eeeh---hhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 00 0011 1111234799998888999999999999999999999 787764
No 200
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.85 E-value=7.1e-05 Score=71.63 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=36.2
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+|||+|||+|.++..||+....|+|+|.|..|+..++.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~ 237 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQY 237 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHH
Confidence 479999999999999999987789999999999998876
No 201
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.84 E-value=0.00012 Score=63.83 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.++||+=||+|.++.|...+|. .|+.+|.|...+...+.-+.+...
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-------------------------------- 90 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-------------------------------- 90 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---------------------------------
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC--------------------------------
Confidence 67999999999999999999997 599999999988776663332110
Q ss_pred CCCCCCCCCeeEEecccccccc----CCCceeEEEec--ccccCcchHHHHHHHHH--HhccCCeEEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC--FFIDCANNIVSFIETIF--NILKPGGIWIN 259 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~--ffidta~n~~~yl~~I~--~~LkpGG~~In 259 (298)
........+|+..... ...+||+|+.- |..... +...++.+. .+|+++|++|.
T Consensus 91 ------~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 91 ------EDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp ------GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHHTTSEEEEEEEEE
T ss_pred ------CcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchH--HHHHHHHHHHCCCCCCCEEEEE
Confidence 1246677777554432 35899998642 221111 355677776 78999998873
No 202
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.84 E-value=7.5e-05 Score=71.68 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=36.1
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+|||++||+|.++..||+....|+|+|.|..|+..++.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~ 246 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY 246 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHH
Confidence 479999999999999999887789999999999998876
No 203
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.81 E-value=0.00022 Score=63.28 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++...+|+|||+|+.....|.. |+. +.|+|+.+.-...|.......... . + ...
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~--~---~-------------------~~g 97 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR--M---K-------------------HYG 97 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH--H---H-------------------HCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH--H---H-------------------Hhh
Confidence 4679999999999999988855 776 999999999888777654332110 0 0 000
Q ss_pred CCCCCCCCCCCeeEEeccccccccCC---CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHP---NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL 263 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~---~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl 263 (298)
.. ...+.+..|||.+..... ..-|+|+..-++= .+++...|.++...||||-.+|..-|+
T Consensus 98 ~~------~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 98 KR------PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp B---------EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred cc------cccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 00 146788899997653211 2347776543221 245677888888999999999975554
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.80 E-value=0.00012 Score=76.15 Aligned_cols=116 Identities=15% Similarity=0.063 Sum_probs=75.7
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC----------------------------------------
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---------------------------------------- 141 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---------------------------------------- 141 (298)
.+...+...-.. ..++..++||+||+|.++.|.|..+
T Consensus 176 tlAaa~l~~a~w---~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 176 NLAAAILLRSGW---PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred HHHHHHHHHcCC---CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 455555544321 1246789999999999999987631
Q ss_pred ----CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccc
Q psy3185 142 ----YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQ 217 (298)
Q Consensus 142 ----~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~ 217 (298)
..++|+|+++.|+..|+.-+... .+ ...+.+..+|+.+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~------------------------------------g~--~~~i~~~~~D~~~ 294 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRA------------------------------------GV--AELITFEVKDVAD 294 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHc------------------------------------CC--CcceEEEeCChhh
Confidence 25899999999999988732210 01 1357789999988
Q ss_pred cccC--CCceeEEEec--cccc--CcchHHHHHHHHHHhcc---CCeEEE
Q psy3185 218 VYVH--PNKWDCVATC--FFID--CANNIVSFIETIFNILK---PGGIWI 258 (298)
Q Consensus 218 ~~~~--~~~fD~V~t~--ffid--ta~n~~~yl~~I~~~Lk---pGG~~I 258 (298)
+... .++||+|+|. |... ...++.+..+.+.+.|| ||+...
T Consensus 295 ~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 295 LKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred cccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 7543 3579999997 4432 23444444445555554 776654
No 205
>KOG3178|consensus
Probab=97.76 E-value=0.00026 Score=66.92 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=90.1
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
...+|.|.|+||++-.+....-.|.|+++...-+..+..-+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~--------------------------------------- 219 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYL--------------------------------------- 219 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhh---------------------------------------
Confidence 57899999999999999996557999999988766543200
Q ss_pred CCCCCCCeeEEeccccccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEecccccc---ccCC-C---
Q psy3185 201 DYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINLGPLLYH---YSNM-L--- 271 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~gPl~y~---~~~~-~--- 271 (298)
. ..+..+.||+..-.+ +=|+|+..+.|+ |-++..++|+++++.|+|||..|....+.=. +.+. .
T Consensus 220 --~--~gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~ 292 (342)
T KOG3178|consen 220 --A--PGVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVT 292 (342)
T ss_pred --c--CCcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCcccccccee
Confidence 0 124567777654422 234999999988 5567899999999999999999854432211 1000 0
Q ss_pred ----------CCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 272 ----------NEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 272 ----------~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
.+...+.+..|...++.+.||...
T Consensus 293 ~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 293 RDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred ehhHHHHHHHhccceeccHHHHHhcchhhcCcee
Confidence 023556788888888888888653
No 206
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.71 E-value=0.0018 Score=56.43 Aligned_cols=131 Identities=14% Similarity=0.149 Sum_probs=84.4
Q ss_pred HHHHHHhhhccCChH-----HHhhhhHHHHHHHHh--hCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCC
Q psy3185 80 TLKQFVRDWSEEGSE-----ERKTCYEPIISEILA--RFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFS 150 (298)
Q Consensus 80 ~l~~~~RdWs~~g~~-----ER~~~~~~i~~~l~~--~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S 150 (298)
.+.++...|.....- ..+.....+++.|.- .++. ...+++|+|+|.|--+.-||-. ..+++.+|-+
T Consensus 7 ~y~~lL~~~N~~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~-----~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~ 81 (184)
T PF02527_consen 7 QYLELLLEWNKKINLTSIRDPEEIWERHILDSLALLPFLPD-----FGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV 81 (184)
T ss_dssp HHHHHHHHHHHCSSS-S--SHHHHHHHHHHHHHGGGGCS-C-----CCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHhCceeeeccCCCHHHHHHHHHHHHHHhhhhhcc-----CCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC
Confidence 444555667652221 222233356665542 2331 2338999999999988877754 4679999999
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe
Q psy3185 151 LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT 230 (298)
Q Consensus 151 ~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t 230 (298)
..-...-+.+.... .+ .|+.+..+...+ ....++||+|++
T Consensus 82 ~KK~~FL~~~~~~L------------------------------------~L---~nv~v~~~R~E~-~~~~~~fd~v~a 121 (184)
T PF02527_consen 82 GKKVAFLKEVVREL------------------------------------GL---SNVEVINGRAEE-PEYRESFDVVTA 121 (184)
T ss_dssp HHHHHHHHHHHHHH------------------------------------T----SSEEEEES-HHH-TTTTT-EEEEEE
T ss_pred chHHHHHHHHHHHh------------------------------------CC---CCEEEEEeeecc-cccCCCccEEEe
Confidence 98665555433210 11 378888888877 335689999988
Q ss_pred cccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 231 CFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 231 ~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
--+ ..+..+++-...+|||||.++-
T Consensus 122 RAv----~~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 122 RAV----APLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ESS----SSHHHHHHHHGGGEEEEEEEEE
T ss_pred ehh----cCHHHHHHHHHHhcCCCCEEEE
Confidence 643 3566788888999999999984
No 207
>KOG0820|consensus
Probab=97.70 E-value=0.00026 Score=64.78 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNN 182 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~ 182 (298)
+++.|.+.-+. +++..||++|-|||.|+..|-..|..|.|+|..+.|+..-....+.
T Consensus 46 v~~~I~~ka~~----k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~g------------------- 102 (315)
T KOG0820|consen 46 VIDQIVEKADL----KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQG------------------- 102 (315)
T ss_pred HHHHHHhccCC----CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcC-------------------
Confidence 66777655442 4677999999999999999999999999999999999765543221
Q ss_pred ccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEe
Q psy3185 183 ILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVAT 230 (298)
Q Consensus 183 ~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t 230 (298)
.|....+.+..|||.... .-.||++++
T Consensus 103 -------------------tp~~~kLqV~~gD~lK~d--~P~fd~cVs 129 (315)
T KOG0820|consen 103 -------------------TPKSGKLQVLHGDFLKTD--LPRFDGCVS 129 (315)
T ss_pred -------------------CCccceeeEEecccccCC--Ccccceeec
Confidence 122357899999997763 357898877
No 208
>KOG2904|consensus
Probab=97.68 E-value=0.00036 Score=64.02 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHHHHHH
Q psy3185 94 EERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 94 ~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~~a~~ 159 (298)
.|.+...+.+++.+...-- ..+..|||+|||+|-++..++.. + ..|+|+|.|...+..|..
T Consensus 128 pETEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e 190 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE 190 (328)
T ss_pred ccHHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH
Confidence 4556666667776664322 13458999999999999998865 4 569999999999987766
No 209
>KOG2352|consensus
Probab=97.63 E-value=0.00047 Score=67.66 Aligned_cols=100 Identities=21% Similarity=0.345 Sum_probs=75.7
Q ss_pred CeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
.++|.+|||.-++..++.+-||. ++.+|+|+--+.+..... + +
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~-~-------~---------------------------- 93 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRN-A-------K---------------------------- 93 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcc-c-------c----------------------------
Confidence 49999999999999999999996 999999999877654311 0 0
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEec-----ccccC-----cchHHHHHHHHHHhccCCeEEEEe
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC-----FFIDC-----ANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~-----ffidt-----a~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
...-+.|...|....++++++||+|+-- +|-|- ...+...+..++++|+|||..+++
T Consensus 94 ----~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 94 ----ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred ----CCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 0135668888888888889999988742 22221 123457899999999999998864
No 210
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.60 E-value=0.00024 Score=61.84 Aligned_cols=115 Identities=21% Similarity=0.200 Sum_probs=82.6
Q ss_pred CChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhcccc
Q psy3185 91 EGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVY 170 (298)
Q Consensus 91 ~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~ 170 (298)
-++.||-..|...++... ...+.|+|+|+|-|++--|..--.|.++|..+.-..++..-+
T Consensus 15 L~D~eRlavF~~ai~~va-----------~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~--------- 74 (252)
T COG4076 15 LRDVERLAVFTSAIAEVA-----------EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENL--------- 74 (252)
T ss_pred hhhHHHHHHHHHHHHHHh-----------hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcC---------
Confidence 456688877776665554 258999999999999998888778999999999776665410
Q ss_pred ccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcc---hHHHHHHHH
Q psy3185 171 KIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN---NIVSFIETI 247 (298)
Q Consensus 171 ~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~---n~~~yl~~I 247 (298)
++ +...|++++.||...+-+ +.-|+|+ |-+|||+- .....+..+
T Consensus 75 ----------------------~v--------~g~~n~evv~gDA~~y~f--e~ADvvi-cEmlDTaLi~E~qVpV~n~v 121 (252)
T COG4076 75 ----------------------HV--------PGDVNWEVVVGDARDYDF--ENADVVI-CEMLDTALIEEKQVPVINAV 121 (252)
T ss_pred ----------------------CC--------CCCcceEEEecccccccc--cccceeH-HHHhhHHhhcccccHHHHHH
Confidence 11 233689999999988754 4556554 56688773 334566666
Q ss_pred HHhccCCeEEE
Q psy3185 248 FNILKPGGIWI 258 (298)
Q Consensus 248 ~~~LkpGG~~I 258 (298)
-..||-.|..|
T Consensus 122 leFLr~d~tii 132 (252)
T COG4076 122 LEFLRYDPTII 132 (252)
T ss_pred HHHhhcCCccc
Confidence 67777777765
No 211
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.60 E-value=0.00037 Score=69.82 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=69.8
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
..+..+||+|||.|....++|... ..+.|+|.+..-+..+.. +....
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~---~~~~~---------------------------- 394 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLK---LAGEQ---------------------------- 394 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH---HHHHc----------------------------
Confidence 346789999999999999999985 569999999886554432 21110
Q ss_pred CCCCCCCCCCCCeeEEeccccccc--cCCCceeEEEeccccc-----Ccch-H--HHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVY--VHPNKWDCVATCFFID-----CANN-I--VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~--~~~~~fD~V~t~ffid-----ta~n-~--~~yl~~I~~~LkpGG~~In 259 (298)
.+ .|+.++.+|+..+. .++++.|.|..+|==- +... + .++++.++++|||||.+-.
T Consensus 395 -----~l---~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 395 -----NI---TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred -----CC---CeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 01 35666666664321 3567888887766211 1111 1 3799999999999998753
No 212
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.58 E-value=0.00085 Score=63.40 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=80.5
Q ss_pred HHHHHHhhhccCChHHHh--hhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHH----HHHc--CCeEEEeeCCH
Q psy3185 80 TLKQFVRDWSEEGSEERK--TCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFE----IARR--GYVCQGNEFSL 151 (298)
Q Consensus 80 ~l~~~~RdWs~~g~~ER~--~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~e----la~~--G~~v~g~D~S~ 151 (298)
-+.++++ .+|+.+-|. ..++.-...|.+.++ ++..|+++|||.|+=+.- |.+. +...+++|+|.
T Consensus 43 LFe~It~--lpEYYptr~E~~iL~~~~~~Ia~~i~------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 43 LFEEITY--SPEYYLTNDEIEILKKHSSDIAASIP------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred HHHHHHc--CCccCChHHHHHHHHHHHHHHHHhcC------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 4455553 456655554 234444556666666 356899999999996443 2222 46789999999
Q ss_pred HHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc---C---CCce
Q psy3185 152 FMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV---H---PNKW 225 (298)
Q Consensus 152 ~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~---~---~~~f 225 (298)
.+|..+...+.. -.+|. ..+.-+.|||.+... . .+..
T Consensus 115 ~~L~~a~~~L~~----------------------------~~~p~---------l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 115 SELQRTLAELPL----------------------------GNFSH---------VRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred HHHHHHHHhhhh----------------------------ccCCC---------eEEEEEEecHHHHHhhcccccccCCc
Confidence 999877653320 01111 133447777755321 1 1234
Q ss_pred eEEEec-cccc--CcchHHHHHHHHHH-hccCCeEEE
Q psy3185 226 DCVATC-FFID--CANNIVSFIETIFN-ILKPGGIWI 258 (298)
Q Consensus 226 D~V~t~-ffid--ta~n~~~yl~~I~~-~LkpGG~~I 258 (298)
.+|+.. ..|- +.++...+|+.|++ .|+|||.++
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 444322 1122 34556789999999 999998886
No 213
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.53 E-value=0.0019 Score=60.15 Aligned_cols=121 Identities=15% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
+.+||++=|=||.++...+..|. +|+++|.|..++..++.-+. .|.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~----lNg----------------------------- 170 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAA----LNG----------------------------- 170 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHH----HTT-----------------------------
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH----HcC-----------------------------
Confidence 57999999999999999888886 59999999999998876211 111
Q ss_pred CCCCCCCCCeeEEecccccccc---CCCceeEEEec--ccccC----cchHHHHHHHHHHhccCCeEEEEeccccccccC
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATC--FFIDC----ANNIVSFIETIFNILKPGGIWINLGPLLYHYSN 269 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~--ffidt----a~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~ 269 (298)
+. .....++.+|..++.. ..++||+|+.= -|.-. ..+..+.+....++|+|||+++.+.
T Consensus 171 ---~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s-------- 238 (286)
T PF10672_consen 171 ---LD-LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS-------- 238 (286)
T ss_dssp ----C-CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--------
T ss_pred ---CC-ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc--------
Confidence 01 1367888999876542 35799988751 11111 2344567778889999999987321
Q ss_pred CCCCCccCCCHHHHHHHHHh
Q psy3185 270 MLNEDSIEPSYEVVKQVIQG 289 (298)
Q Consensus 270 ~~~~~~~~ls~eEl~~~~~~ 289 (298)
-+..++.+.+.+.+..
T Consensus 239 ----cs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 239 ----CSHHISPDFLLEAVAE 254 (286)
T ss_dssp ------TTS-HHHHHHHHHH
T ss_pred ----CCcccCHHHHHHHHHH
Confidence 1344555666665544
No 214
>KOG3420|consensus
Probab=97.53 E-value=0.00013 Score=60.99 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=36.2
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
-.+.+++|+|||+|.|....+..+.+ |.|+|+.+..|+.++.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~r 89 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTR 89 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhh
Confidence 35789999999999999777777765 9999999999988765
No 215
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.50 E-value=0.00014 Score=62.45 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=29.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~ 152 (298)
++.+|||+||+.|..+..+.+++ ..|.|+|..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999998 67999999875
No 216
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.48 E-value=0.00039 Score=59.46 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=49.7
Q ss_pred eEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCC
Q psy3185 122 NILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSD 201 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~ 201 (298)
.|||+.||.|..+..+|+.+..|+|+|+++..+..++. .+ .+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~h---Na------~vY---------------------------- 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKH---NA------EVY---------------------------- 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHH---HH------HHT----------------------------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHH---HH------HHc----------------------------
Confidence 69999999999999999999899999999999998876 11 111
Q ss_pred CCCCCCeeEEeccccccccC--CCc-eeEEEe
Q psy3185 202 YNDDCDFSMAAGDFLQVYVH--PNK-WDCVAT 230 (298)
Q Consensus 202 ~~~~~~~~~~~gDf~~~~~~--~~~-fD~V~t 230 (298)
.-..++.++.|||.++... .+. +|+|+.
T Consensus 45 -Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 45 -GVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp -T-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred -CCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 0014789999999887532 122 798873
No 217
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.46 E-value=0.0015 Score=54.23 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCCCeEEEecccCcHHHHHHHH------cCCeEEEeeCCHHHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIAR------RGYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~------~G~~v~g~D~S~~Ml~~a~~~l 161 (298)
.+...|+|+|||.|.|+..|+. .+..|+|+|.++.++..++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence 3567999999999999999999 3788999999999998877643
No 218
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.44 E-value=0.00063 Score=65.66 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=70.9
Q ss_pred CCeEEEecccCcHHHHHHHHc--CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+.||+|-.+.+++.+ |. .|++||.++..+...+.-+.. +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----N---------------------------- 92 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----N---------------------------- 92 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------------
Confidence 469999999999999999998 54 699999999988776552111 0
Q ss_pred CCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
...++.+..+|+..+... ..+||+|.. |.-.....+++.+.+.+++||++..
T Consensus 93 -------~~~~~~v~~~Da~~~l~~~~~~fDvIdl----DPfGs~~~fld~al~~~~~~glL~v 145 (374)
T TIGR00308 93 -------SVENIEVPNEDAANVLRYRNRKFHVIDI----DPFGTPAPFVDSAIQASAERGLLLV 145 (374)
T ss_pred -------CCCcEEEEchhHHHHHHHhCCCCCEEEe----CCCCCcHHHHHHHHHhcccCCEEEE
Confidence 002466777887766432 357998753 4433445899999999999998753
No 219
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.40 E-value=0.0018 Score=62.81 Aligned_cols=104 Identities=15% Similarity=0.162 Sum_probs=75.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
++.+||++=|=||..+...|..|. +||+||.|...|..|+.-.. .| .+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~----LN---------------------------g~ 265 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE----LN---------------------------GL 265 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH----hc---------------------------CC
Confidence 367899999999999999999999 79999999999998876211 11 11
Q ss_pred CCCCCCCCCCeeEEecccccccc----CCCceeEEEec--ccc-------cCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYV----HPNKWDCVATC--FFI-------DCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~----~~~~fD~V~t~--ffi-------dta~n~~~yl~~I~~~LkpGG~~In 259 (298)
. .....++.+|..++.. ...+||+|+.= -|. +-..+....+....++|+|||+++.
T Consensus 266 -----~-~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~ 334 (393)
T COG1092 266 -----D-GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT 334 (393)
T ss_pred -----C-ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 1 1356789999877653 23599999851 121 1234455677777889999999984
No 220
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.40 E-value=0.0049 Score=54.65 Aligned_cols=120 Identities=17% Similarity=0.104 Sum_probs=80.3
Q ss_pred EEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 123 ILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 123 VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
|.|+||-=|.|+..|++.|. .|.++|+++.-+..|+.-+.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~----------------------------------- 45 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG----------------------------------- 45 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-----------------------------------
Confidence 68999999999999999997 59999999999998887544310
Q ss_pred CCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCH
Q psy3185 201 DYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSY 280 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~ 280 (298)
+ ...+....||-.+...+.+..|+|+-+=+ -..-+.+.|+.....++....+| +.|.. ..
T Consensus 46 -l--~~~i~~rlgdGL~~l~~~e~~d~ivIAGM--GG~lI~~ILe~~~~~~~~~~~lI-LqP~~--------------~~ 105 (205)
T PF04816_consen 46 -L--EDRIEVRLGDGLEVLKPGEDVDTIVIAGM--GGELIIEILEAGPEKLSSAKRLI-LQPNT--------------HA 105 (205)
T ss_dssp ----TTTEEEEE-SGGGG--GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEE-EEESS---------------H
T ss_pred -C--cccEEEEECCcccccCCCCCCCEEEEecC--CHHHHHHHHHhhHHHhccCCeEE-EeCCC--------------Ch
Confidence 1 14688889996555433334787665421 22235566777777776655666 55631 27
Q ss_pred HHHHHHHHhCCCEEEEe
Q psy3185 281 EVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 281 eEl~~~~~~~GF~i~~~ 297 (298)
.+|++++.+.||.|++|
T Consensus 106 ~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 106 YELRRWLYENGFEIIDE 122 (205)
T ss_dssp HHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 89999999999999987
No 221
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.36 E-value=0.002 Score=59.58 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCeEEEeccc-CcHHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 120 DVNILVPGAG-LGRLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 120 ~~~VLdpGcG-~Grla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
+.+|+-+||| +---+..||++ |..|+++|.++..+..|+.+.+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~------------------------------ 170 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL------------------------------ 170 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---------------------------------
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc------------------------------
Confidence 4599999999 67777888865 4569999999999999988655210
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEeccccc-CcchHHHHHHHHHHhccCCeEEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFID-CANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffid-ta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+ + ...+.+..+|..+...+-..||+|+-+-..- ++++..+.|+.+.+.++||..++-
T Consensus 171 ~-----L--~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 171 G-----L--SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp H-----H---SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred c-----c--cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEE
Confidence 0 1 1478999999988765557999887765553 677889999999999999998873
No 222
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.34 E-value=0.0011 Score=60.64 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+.+.... .++..||++|+|+|.++.+|++.|-.|+++|.+..+....+.
T Consensus 18 ~~~~Iv~~~~~----~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~ 70 (262)
T PF00398_consen 18 IADKIVDALDL----SEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKE 70 (262)
T ss_dssp HHHHHHHHHTC----GTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCC----CCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHH
Confidence 45555554442 247899999999999999999999889999999998765543
No 223
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.28 E-value=0.0019 Score=61.38 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=31.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~ 151 (298)
.++.++||+||++|..++.|+++|..|+|||.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh
Confidence 3578999999999999999999999999999654
No 224
>KOG3191|consensus
Probab=97.22 E-value=0.0089 Score=51.92 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=33.4
Q ss_pred CCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~ 159 (298)
..-+|++|||+|-.+-.|++. | .-+.+.|+++..+.+...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~ 86 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLE 86 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHH
Confidence 457899999999999999986 3 347799999999887654
No 225
>KOG1709|consensus
Probab=97.22 E-value=0.0031 Score=56.08 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=82.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 101 ~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.||+..+.+... .++.+||.+|-|.|-..-.+.++. ..=+-+|..+..+..-+. .
T Consensus 88 tpiMha~A~ai~-----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~---~---------------- 143 (271)
T KOG1709|consen 88 TPIMHALAEAIS-----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD---W---------------- 143 (271)
T ss_pred hHHHHHHHHHHh-----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh---c----------------
Confidence 468887777665 358899999999999999988774 557788888887654332 1
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.+ -+..|+.+..|-..++.. +++.||.|.---|-..-+++..+.+.+.++|||+|++
T Consensus 144 ------------------gw---~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 144 ------------------GW---REKENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVF 202 (271)
T ss_pred ------------------cc---ccccceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceE
Confidence 00 123577777777666543 4678999875444445578889999999999999998
Q ss_pred E
Q psy3185 258 I 258 (298)
Q Consensus 258 I 258 (298)
-
T Consensus 203 S 203 (271)
T KOG1709|consen 203 S 203 (271)
T ss_pred E
Confidence 4
No 226
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.18 E-value=0.0041 Score=61.82 Aligned_cols=44 Identities=18% Similarity=0.065 Sum_probs=37.1
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHHHHHHHHHh
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
++.+|||.+||.|.=+..||.. + ..|+++|+|...+...+..+.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~ 159 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS 159 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 5789999999999999999986 2 479999999999887766444
No 227
>KOG1663|consensus
Probab=97.16 E-value=0.0069 Score=54.30 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=87.8
Q ss_pred cchHHHHHHHHHH-HhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc---CCeEEEe
Q psy3185 72 TDLEKVQTTLKQF-VRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR---GYVCQGN 147 (298)
Q Consensus 72 ~~~~~v~~~l~~~-~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~---G~~v~g~ 147 (298)
..+..++++-... ..-|.....+|--+ ++..+.+.+. ..+.|++|.=||.=+...|.. +..|+++
T Consensus 36 ~~l~el~e~t~~~~~~~~~m~v~~d~g~----fl~~li~~~~-------ak~~lelGvfTGySaL~~Alalp~dGrv~a~ 104 (237)
T KOG1663|consen 36 ELLKELREATLTYPQPGSEMLVGPDKGQ----FLQMLIRLLN-------AKRTLELGVFTGYSALAVALALPEDGRVVAI 104 (237)
T ss_pred HHHHHHHHHHhhcCCcccceecChHHHH----HHHHHHHHhC-------CceEEEEecccCHHHHHHHHhcCCCceEEEE
Confidence 3444555444444 35676666666543 5666665553 569999998777766665554 7889999
Q ss_pred eCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc------C
Q psy3185 148 EFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV------H 221 (298)
Q Consensus 148 D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~------~ 221 (298)
|....-...+..+...+ . - ...+++.+|+..+... +
T Consensus 105 eid~~~~~~~~~~~k~a-g--v-----------------------------------~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 105 EIDADAYEIGLELVKLA-G--V-----------------------------------DHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred ecChHHHHHhHHHHHhc-c--c-----------------------------------cceeeeeecchhhhHHHHHhcCC
Confidence 99999888775543221 1 0 1245566666554321 4
Q ss_pred CCceeEEEeccccc-CcchHHHHHHHHHHhccCCeEEE
Q psy3185 222 PNKWDCVATCFFID-CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 222 ~~~fD~V~t~ffid-ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
.++||.|+ +| .-.|-..|.++.-++||+||+++
T Consensus 147 ~~tfDfaF----vDadK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 147 SGTFDFAF----VDADKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred CCceeEEE----EccchHHHHHHHHHHHhhcccccEEE
Confidence 68999864 55 33455689999999999999987
No 228
>KOG1331|consensus
Probab=97.14 E-value=0.00041 Score=63.85 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=67.0
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+.-+||.|||.|....-= -..-+.|.|.+...+..++.
T Consensus 46 gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~---------------------------------------- 83 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKR---------------------------------------- 83 (293)
T ss_pred cceeeecccCCcccCcCC--Ccceeeecchhhhhcccccc----------------------------------------
Confidence 678999999999654321 12357888988876655432
Q ss_pred CCCCCCCCe-eEEeccccccccCCCceeEEEeccccc---CcchHHHHHHHHHHhccCCeEE
Q psy3185 200 SDYNDDCDF-SMAAGDFLQVYVHPNKWDCVATCFFID---CANNIVSFIETIFNILKPGGIW 257 (298)
Q Consensus 200 ~~~~~~~~~-~~~~gDf~~~~~~~~~fD~V~t~ffid---ta~n~~~yl~~I~~~LkpGG~~ 257 (298)
.+- .++.+|.+.++..+.+||.+++.-+|+ |.......++++.++|||||..
T Consensus 84 ------~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~ 139 (293)
T KOG1331|consen 84 ------SGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNA 139 (293)
T ss_pred ------CCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCce
Confidence 112 578889999988889999888877776 4455678999999999999963
No 229
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0028 Score=62.32 Aligned_cols=101 Identities=18% Similarity=0.152 Sum_probs=71.1
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
++.+|||+=||.|.++..||+++.+|+|+|.++.++..|++-.. .|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~----~n------------------------------ 338 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAA----AN------------------------------ 338 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHH----Hc------------------------------
Confidence 35699999999999999999999999999999999999987321 11
Q ss_pred CCCCCCCCCeeEEeccccccccCC---CceeEEEecccccCcc-hH-HHHHHHHHHhccCCeEEEEecc
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYVHP---NKWDCVATCFFIDCAN-NI-VSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~~~---~~fD~V~t~ffidta~-n~-~~yl~~I~~~LkpGG~~In~gP 262 (298)
...|+.+..||..++.... ..+|+|+ +|... -+ .+.++.|.+.--+.=+.|.+.|
T Consensus 339 -----~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv----vDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP 398 (432)
T COG2265 339 -----GIDNVEFIAGDAEEFTPAWWEGYKPDVVV----VDPPRAGADREVLKQLAKLKPKRIVYVSCNP 398 (432)
T ss_pred -----CCCcEEEEeCCHHHHhhhccccCCCCEEE----ECCCCCCCCHHHHHHHHhcCCCcEEEEeCCH
Confidence 1136889999988775432 4778776 35322 12 2677777774434334455555
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.016 Score=51.70 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=95.6
Q ss_pred HHHHHHhhhccCC-----hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHH
Q psy3185 80 TLKQFVRDWSEEG-----SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLF 152 (298)
Q Consensus 80 ~l~~~~RdWs~~g-----~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~ 152 (298)
...++...|.... ..+-+..-.-+++.+.-..... ..+.+++|+|+|.|--+.-||- ..-.|+-+|-...
T Consensus 26 ~Y~~lL~~wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~---~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K 102 (215)
T COG0357 26 AYVELLLKWNKAYNLTAIRDPEELWQRHILDSLVLLPYLD---GKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102 (215)
T ss_pred HHHHHHHHhhHhcCCCCCCCHHHHHHHHHHHHhhhhhccc---ccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence 5555566776522 1122233344556554332211 1157999999999998888773 3556999998776
Q ss_pred HHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCc-eeEEEec
Q psy3185 153 MLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNK-WDCVATC 231 (298)
Q Consensus 153 Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~-fD~V~t~ 231 (298)
=...-+.+... + . -.|+.++.+...++.. ... ||+|++-
T Consensus 103 k~~FL~~~~~e---------------------------------L---~---L~nv~i~~~RaE~~~~-~~~~~D~vtsR 142 (215)
T COG0357 103 KIAFLREVKKE---------------------------------L---G---LENVEIVHGRAEEFGQ-EKKQYDVVTSR 142 (215)
T ss_pred HHHHHHHHHHH---------------------------------h---C---CCCeEEehhhHhhccc-ccccCcEEEee
Confidence 44333332111 0 1 1478888888877743 223 9999875
Q ss_pred ccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 232 FFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 232 ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
-+ .++....+-...++|+||.++. |.+... .=-..|....+...||.+++
T Consensus 143 Av----a~L~~l~e~~~pllk~~g~~~~-----~k~~~~------~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 143 AV----ASLNVLLELCLPLLKVGGGFLA-----YKGLAG------KDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred hc----cchHHHHHHHHHhcccCCcchh-----hhHHhh------hhhHHHHHHHHHhhcCcEEE
Confidence 43 3566778888899999998763 221110 00156677777777887765
No 231
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.01 Score=56.56 Aligned_cols=142 Identities=20% Similarity=0.203 Sum_probs=98.4
Q ss_pred hccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH--HHhhh
Q psy3185 88 WSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF--ILNKC 164 (298)
Q Consensus 88 Ws~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~--~l~~~ 164 (298)
||..-..||. .+.+ .+. .+..|||+=||.|-++..+|+.|.. |.|+|+.+..+...+. .+|+
T Consensus 171 Fsprl~~ER~----Rva~----~v~------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~- 235 (341)
T COG2520 171 FSPRLSTERA----RVAE----LVK------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK- 235 (341)
T ss_pred ECCCchHHHH----HHHh----hhc------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC-
Confidence 8888888886 2322 222 3679999999999999999999976 9999999998765543 1221
Q ss_pred hhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHH
Q psy3185 165 REKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFI 244 (298)
Q Consensus 165 ~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl 244 (298)
+ ...+....||..++....+.+|-|+....-+ -.+|+
T Consensus 236 --------------------------------v-------~~~v~~i~gD~rev~~~~~~aDrIim~~p~~----a~~fl 272 (341)
T COG2520 236 --------------------------------V-------EGRVEPILGDAREVAPELGVADRIIMGLPKS----AHEFL 272 (341)
T ss_pred --------------------------------c-------cceeeEEeccHHHhhhccccCCEEEeCCCCc----chhhH
Confidence 0 1247789999998876558899887765443 24688
Q ss_pred HHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEE
Q psy3185 245 ETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVY 294 (298)
Q Consensus 245 ~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i 294 (298)
....+++|+||+.- .|.+... ....+....++.....+.|.+.
T Consensus 273 ~~A~~~~k~~g~iH-----yy~~~~e--~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 273 PLALELLKDGGIIH-----YYEFVPE--DDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred HHHHHHhhcCcEEE-----EEeccch--hhcccchHHHHHHHHhhccCcc
Confidence 88888999988653 1222211 1112236788888888887644
No 232
>PRK10742 putative methyltransferase; Provisional
Probab=96.99 E-value=0.0031 Score=57.41 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=38.2
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhh
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
.+|||.=||+|+.++++|.+|+.|+++|-|+.+....+.-+.+
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999998776665544
No 233
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.98 E-value=0.0046 Score=59.20 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+++.+.+.++. .+.+|||+=||+|.++..||+.+-.|+|+|.+..|+..|+.
T Consensus 184 ~l~~~~~~~l~~-----~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~ 236 (352)
T PF05958_consen 184 KLYEQALEWLDL-----SKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARE 236 (352)
T ss_dssp HHHHHHHHHCTT------TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHhhc-----CCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHH
Confidence 355555555553 23389999999999999999999999999999999998876
No 234
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.95 E-value=0.0068 Score=54.25 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C--CeEEEeeCCHHHH
Q psy3185 83 QFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G--YVCQGNEFSLFML 154 (298)
Q Consensus 83 ~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G--~~v~g~D~S~~Ml 154 (298)
--+|-|++.... +...|..-+.... -.++.+||-+|+.+|...-.++.- | ..|+|+|+|+.+.
T Consensus 46 ~eYR~W~P~RSK--------LaAai~~Gl~~~~-ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~ 111 (229)
T PF01269_consen 46 VEYRVWNPFRSK--------LAAAILKGLENIP-IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM 111 (229)
T ss_dssp EEEEEE-TTT-H--------HHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH
T ss_pred cceeecCchhhH--------HHHHHHcCccccC-CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH
Confidence 347889885422 3333432221000 135789999999999999998876 3 4799999999754
No 235
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.95 E-value=0.0047 Score=58.70 Aligned_cols=42 Identities=26% Similarity=0.162 Sum_probs=36.3
Q ss_pred CCCCeEEEeccc-CcHHHHHHHH-cCCeEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIAR-RGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~-~G~~v~g~D~S~~Ml~~a~~ 159 (298)
+++.+|++.|+| +|.+|..+|+ .|.+|+++|.|..=++.++.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 457899999886 7789999998 69999999999998877766
No 236
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.80 E-value=0.0045 Score=49.16 Aligned_cols=74 Identities=18% Similarity=0.341 Sum_probs=47.8
Q ss_pred HHHHHH-HHHHhhhccCChHHHhhhhH--HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCC
Q psy3185 76 KVQTTL-KQFVRDWSEEGSEERKTCYE--PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 76 ~v~~~l-~~~~RdWs~~g~~ER~~~~~--~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S 150 (298)
++++.- +.++..|.+..+++.- .|+ -|..+|..+........+...-.|+|||.|-|.+-|.+.||.=.|+|.=
T Consensus 13 ~LK~kYa~~lv~~W~E~TdP~K~-VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 13 RLKEKYARWLVDNWPESTDPQKH-VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHHHhCcccCCchhh-HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 344444 4677889765555432 222 1233443333211112356789999999999999999999999999964
No 237
>KOG2915|consensus
Probab=96.74 E-value=0.014 Score=53.60 Aligned_cols=131 Identities=22% Similarity=0.165 Sum_probs=85.7
Q ss_pred hhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHh
Q psy3185 86 RDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 86 RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+|.-.=..--+..|.|=++.|...+.- +++.+||+-|.|.|.+++.||+.- ..+...|+-..-...|+.
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~~~L~i----~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~e--- 148 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMILSMLEI----RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALE--- 148 (314)
T ss_pred HHhhhhccCcceEEecccHHHHHHHhcC----CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHH---
Confidence 3566544444456677767777766643 468899999999999999999983 569999996654444433
Q ss_pred hhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--CCCceeEEEecccccCcchH
Q psy3185 163 KCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCANNI 240 (298)
Q Consensus 163 ~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta~n~ 240 (298)
.-.+ -.++ .++.+..-|.+..-+ ....+|+|+ || .+++
T Consensus 149 eFr~-------------------------hgi~----------~~vt~~hrDVc~~GF~~ks~~aDaVF----LD-lPaP 188 (314)
T KOG2915|consen 149 EFRE-------------------------HGIG----------DNVTVTHRDVCGSGFLIKSLKADAVF----LD-LPAP 188 (314)
T ss_pred HHHH-------------------------hCCC----------cceEEEEeecccCCccccccccceEE----Ec-CCCh
Confidence 2111 1121 255555555443322 246777764 55 3567
Q ss_pred HHHHHHHHHhccCCe-EEEEeccc
Q psy3185 241 VSFIETIFNILKPGG-IWINLGPL 263 (298)
Q Consensus 241 ~~yl~~I~~~LkpGG-~~In~gPl 263 (298)
-+.+...+++||.+| +++++.|.
T Consensus 189 w~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 189 WEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred hhhhhhhHHHhhhcCceEEeccHH
Confidence 788899999999654 88998885
No 238
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.64 E-value=0.025 Score=54.11 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=73.6
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC-C-eEEEeeCCHHHHHHHHH--HHhhhhhccccccccccccccccccccccccccc
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG-Y-VCQGNEFSLFMLFASNF--ILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVT 193 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G-~-~v~g~D~S~~Ml~~a~~--~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ 193 (298)
+.-.+||++|-|-|--+.||-+.. . +++-+|+.+.|++.++. ++. ..|+.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr---~~N~~----------------------- 341 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLR---ALNQG----------------------- 341 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhh---hhccC-----------------------
Confidence 345689999999999999999984 4 69999999999999884 221 11111
Q ss_pred cCCCCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcch-H-----HHHHHHHHHhccCCeEEEE
Q psy3185 194 FPDINTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANN-I-----VSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 194 ipd~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n-~-----~~yl~~I~~~LkpGG~~In 259 (298)
++ .+.+++++..|..++.. ..++||+|+-- +.|.... + .++..-..+.|+++|.+|.
T Consensus 342 -------sf-~dpRv~Vv~dDAf~wlr~a~~~fD~vIVD-l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 342 -------SF-SDPRVTVVNDDAFQWLRTAADMFDVVIVD-LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred -------Cc-cCCeeEEEeccHHHHHHhhcccccEEEEe-CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 11 12578888888766653 34799987643 2342211 1 2466666778889999984
No 239
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.52 E-value=0.0064 Score=54.93 Aligned_cols=80 Identities=26% Similarity=0.293 Sum_probs=50.2
Q ss_pred CeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCC
Q psy3185 121 VNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTS 200 (298)
Q Consensus 121 ~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~ 200 (298)
.+|||.=||+|+.|+-+|..|++|+++|-|+.|....+.-|++.... + +...
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~------~---------------------~~~~- 128 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQD------P---------------------ELLA- 128 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHS------T---------------------TTHH-
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhC------c---------------------HhHH-
Confidence 48999999999999999999999999999999987766655543221 0 0000
Q ss_pred CCCCCCCeeEEecccccccc-CCCceeEEEe
Q psy3185 201 DYNDDCDFSMAAGDFLQVYV-HPNKWDCVAT 230 (298)
Q Consensus 201 ~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t 230 (298)
....++++..+|..++.. ++++||+|..
T Consensus 129 --~~~~ri~l~~~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 129 --EAMRRIQLIHGDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp --HHHHHEEEEES-CCCHCCCHSS--SEEEE
T ss_pred --HHHhCCEEEcCCHHHHHhhcCCCCCEEEE
Confidence 001378899999888754 4589999964
No 240
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.051 Score=52.39 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=74.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-----------------------------------------eEEEeeCCHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-----------------------------------------VCQGNEFSLFMLFASN 158 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-----------------------------------------~v~g~D~S~~Ml~~a~ 158 (298)
+..++||=||+|.++.|.|..+- ...|.|++..|+..|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 46899999999999999998874 2679999999999987
Q ss_pred HHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEec--cc--c
Q psy3185 159 FILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATC--FF--I 234 (298)
Q Consensus 159 ~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~--ff--i 234 (298)
. | +..+ .-...+.+.++|+..+..+.+.+|+|+|+ |- |
T Consensus 272 ~--N-A~~A-----------------------------------Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRl 313 (381)
T COG0116 272 A--N-ARAA-----------------------------------GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERL 313 (381)
T ss_pred H--H-HHhc-----------------------------------CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhc
Confidence 6 2 2211 11246889999999886544899999987 32 3
Q ss_pred cCcchHH----HHHHHHHHhccCCeEEEEecc
Q psy3185 235 DCANNIV----SFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 235 dta~n~~----~yl~~I~~~LkpGG~~In~gP 262 (298)
.+...+. ++.+++.+.++-.+..|..++
T Consensus 314 g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 314 GSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 3333333 344556666666667775554
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.48 E-value=0.0047 Score=50.50 Aligned_cols=39 Identities=18% Similarity=0.027 Sum_probs=34.4
Q ss_pred eEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHH
Q psy3185 122 NILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~ 160 (298)
.|||+|||.|..+..+++.+. +|+++|.++.|+...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHH
Confidence 489999999999999999876 499999999999877653
No 242
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.45 E-value=0.078 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=18.9
Q ss_pred CccCCCHHHHHHHHHhCC-CEEEE
Q psy3185 274 DSIEPSYEVVKQVIQGLG-FVYEV 296 (298)
Q Consensus 274 ~~~~ls~eEl~~~~~~~G-F~i~~ 296 (298)
|....|.+|+++++++.| |+|.+
T Consensus 283 P~Y~ps~eEv~~~Ie~~gsF~I~~ 306 (386)
T PLN02668 283 PVYAPSLQDFKEVVEANGSFAIDK 306 (386)
T ss_pred cccCCCHHHHHHHHhhcCCEEeee
Confidence 556689999999999877 87764
No 243
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.35 E-value=0.022 Score=57.13 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.++.+||++|||. |..+...|+. |..|.++|.++.-+..++.+ . +. ...+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-G-A~---~v~i----------------------- 214 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-G-AE---FLEL----------------------- 214 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C-Ce---EEEe-----------------------
Confidence 3578999999996 6666666665 89999999999988777652 1 10 0000
Q ss_pred CCCCCCCCCCCCeeEEecccc----ccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 196 DINTSDYNDDCDFSMAAGDFL----QVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~----~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
+..........-..-...++. +.+.+ -+.+|+|+++-.+...+...-..++.-+.+||||+.+.+|
T Consensus 215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 000000000000000001111 01111 1469999999877665444444689999999999998654
No 244
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.1 Score=49.81 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=64.5
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccc
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQT 179 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~ 179 (298)
.++.|....|. -...+|||+|.|-|.-++.+-.-- -+++-+|.|+..-....-+- ..++|
T Consensus 101 sL~~L~~~~~d----fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~--------~nv~t----- 163 (484)
T COG5459 101 SLDELQKRVPD----FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLA--------ENVST----- 163 (484)
T ss_pred HHHHHHHhCCC----cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHH--------hhccc-----
Confidence 56677766652 345679999999998887765432 23555666655433322211 11111
Q ss_pred cccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEE-eccccc--CcchHHHHHHHHHHhccCCeE
Q psy3185 180 DNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVA-TCFFID--CANNIVSFIETIFNILKPGGI 256 (298)
Q Consensus 180 s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~-t~ffid--ta~n~~~yl~~I~~~LkpGG~ 256 (298)
...+. ...++.+ |-..+ +....|++|+ +.-.++ ....+..+|+....++.|||.
T Consensus 164 ----------------~~td~---r~s~vt~---dRl~l-p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~ 220 (484)
T COG5459 164 ----------------EKTDW---RASDVTE---DRLSL-PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGH 220 (484)
T ss_pred ----------------ccCCC---CCCccch---hccCC-CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCe
Confidence 00000 0112221 11122 2345677543 333332 233467799999999999999
Q ss_pred EEEecc
Q psy3185 257 WINLGP 262 (298)
Q Consensus 257 ~In~gP 262 (298)
++.+.|
T Consensus 221 lVivEr 226 (484)
T COG5459 221 LVIVER 226 (484)
T ss_pred EEEEeC
Confidence 986643
No 245
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.066 Score=48.39 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=81.1
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
.++..+||+|+-||.++--+.++|.. |+|+|.+...|.-.-. . |
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR---~--------------------------------d 122 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR---N--------------------------------D 122 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh---c--------------------------------C
Confidence 46789999999999999999999975 9999999876542110 0 0
Q ss_pred CCCCCCCCCCCeeEEeccccccccC--CCceeEEEe-cccccCcchHHHHHHHHHHhccCCeEEEE-eccccccccC-C-
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVH--PNKWDCVAT-CFFIDCANNIVSFIETIFNILKPGGIWIN-LGPLLYHYSN-M- 270 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~--~~~fD~V~t-~ffidta~n~~~yl~~I~~~LkpGG~~In-~gPl~y~~~~-~- 270 (298)
| .-..+-..++..+.++ .+..|.+++ .-|| .+...|..+..+|+|||-.+- +-|-.---.+ .
T Consensus 123 --~------rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~ 190 (245)
T COG1189 123 --P------RVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG 190 (245)
T ss_pred --C------cEEEEecCChhhCCHHHcccCCCeEEEEeehh----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC
Confidence 0 0112222333333211 124555443 3344 466789999999999998874 2332100000 0
Q ss_pred -----CCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 271 -----LNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 271 -----~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.+........+++..++.+.||.+..
T Consensus 191 kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 191 KKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred cCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 11223345678899999999998864
No 246
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.061 Score=46.99 Aligned_cols=40 Identities=23% Similarity=0.030 Sum_probs=35.9
Q ss_pred CCeEEEecccCcHHHHHHHHcCC-eEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~-~v~g~D~S~~Ml~~a~~ 159 (298)
+.++||+=||+|-++.|-+.+|. .|+.+|.+.......+.
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~ 84 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKE 84 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHH
Confidence 68999999999999999999996 59999999998776654
No 247
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.1 Score=46.19 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhhcc-CChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCC---eEEEeeCC
Q psy3185 75 EKVQTTLKQFVRDWSE-EGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY---VCQGNEFS 150 (298)
Q Consensus 75 ~~v~~~l~~~~RdWs~-~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~---~v~g~D~S 150 (298)
.++.+.++..+.-|+. +|-.-| +.|. + .+|.+.+.. -+++.+|+|+||--|.-+..++++.. .|.|+|+-
T Consensus 6 ~wl~~~~~D~Y~~~Ak~~gyRSR-Aa~K-L-~el~~k~~i---~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~ 79 (205)
T COG0293 6 RWLAEHLRDPYYKKAKKEGYRSR-AAYK-L-LELNEKFKL---FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDIL 79 (205)
T ss_pred HHHHHhhcCHHHHHHhhccccch-HHHH-H-HHHHHhcCe---ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECc
Confidence 4455566666666664 333333 2232 3 334333321 24578999999999999999888733 38999986
Q ss_pred HHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc--------CC
Q psy3185 151 LFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV--------HP 222 (298)
Q Consensus 151 ~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~--------~~ 222 (298)
+- .| . .++.+.+|||+.-.. ..
T Consensus 80 p~---------------------------------------------~~---~--~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 80 PM---------------------------------------------KP---I--PGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cc---------------------------------------------cc---C--CCceEEeeeccCccHHHHHHHHcCC
Confidence 52 00 1 257788888876432 23
Q ss_pred CceeEEEecc--------cccCcch---HHHHHHHHHHhccCCeEEEE
Q psy3185 223 NKWDCVATCF--------FIDCANN---IVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 223 ~~fD~V~t~f--------fidta~n---~~~yl~~I~~~LkpGG~~In 259 (298)
...|+|+|=. -+|+..- ....++....+|+|||.++.
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 4469888632 2343322 12456666779999999985
No 248
>KOG2730|consensus
Probab=95.79 E-value=0.016 Score=51.79 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=37.2
Q ss_pred CCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
...|+|.-||.|..+...|.+|..|.++|+++.=+.+|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Akh 134 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARH 134 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhc
Confidence 4689999999999999999999999999999999988875
No 249
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.19 Score=48.22 Aligned_cols=46 Identities=15% Similarity=-0.037 Sum_probs=37.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcC----CeEEEeeCCHHHHHHHHHHHhh
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRG----YVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G----~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
.++.+|||+.++-|.=+-.||... ..|+++|.|..=+...+..+++
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 457899999999999888888874 4489999999877766664444
No 250
>PRK13699 putative methylase; Provisional
Probab=95.76 E-value=0.041 Score=49.48 Aligned_cols=74 Identities=12% Similarity=0.237 Sum_probs=49.5
Q ss_pred eEEeccccccc--cCCCceeEEEec--ccccC----c---------chHHHHHHHHHHhccCCeEEEEeccccccccCCC
Q psy3185 209 SMAAGDFLQVY--VHPNKWDCVATC--FFIDC----A---------NNIVSFIETIFNILKPGGIWINLGPLLYHYSNML 271 (298)
Q Consensus 209 ~~~~gDf~~~~--~~~~~fD~V~t~--ffidt----a---------~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~ 271 (298)
.+..||..++. .++++.|+|+|- |++.. . +=...++++++|+|||||.++.+.. |+.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~--~~~---- 76 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG--WNR---- 76 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec--ccc----
Confidence 35677877763 367889988885 55420 0 1134688999999999999886432 111
Q ss_pred CCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 272 NEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 272 ~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
...+..++++.||.+..
T Consensus 77 --------~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 77 --------VDRFMAAWKNAGFSVVG 93 (227)
T ss_pred --------HHHHHHHHHHCCCEEee
Confidence 34567778899998753
No 251
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.74 E-value=0.011 Score=46.04 Aligned_cols=92 Identities=18% Similarity=0.118 Sum_probs=40.2
Q ss_pred EEecccCcHHHHHHHHc----C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCC
Q psy3185 124 LVPGAGLGRLAFEIARR----G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDIN 198 (298)
Q Consensus 124 LdpGcG~Grla~ela~~----G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~ 198 (298)
|++|+..|+-+..+++. + ..++++|..+. ....+..+.+ .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~----------------------------~------ 45 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK----------------------------A------ 45 (106)
T ss_dssp --------------------------EEEESS-----------------------------------------G------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh----------------------------c------
Confidence 67899999988887753 2 37999999986 1111111100 0
Q ss_pred CCCCCCCCCeeEEecccccccc--CCCceeEEEeccccc---CcchHHHHHHHHHHhccCCeEEE
Q psy3185 199 TSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCFFID---CANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 199 ~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~ffid---ta~n~~~yl~~I~~~LkpGG~~I 258 (298)
....++.++.|++.+... ..++||.|+ || +.+.....++.+...|+|||+++
T Consensus 46 ----~~~~~~~~~~g~s~~~l~~~~~~~~dli~----iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 46 ----GLSDRVEFIQGDSPDFLPSLPDGPIDLIF----IDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp ----GG-BTEEEEES-THHHHHHHHH--EEEEE----EES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred ----CCCCeEEEEEcCcHHHHHHcCCCCEEEEE----ECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 001468899999877643 235777653 55 34667889999999999999887
No 252
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.65 E-value=0.051 Score=51.14 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.||| +|.++..+|+. |. .|.++|.|..-+..++.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 46789999886 56677778875 87 59999999987776654
No 253
>KOG0822|consensus
Probab=95.54 E-value=0.043 Score=54.66 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=80.6
Q ss_pred HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHH------cCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccc
Q psy3185 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIAR------RGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPW 175 (298)
Q Consensus 102 ~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~------~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~ 175 (298)
.|...|..+.|..... ....|+++|+|-|-|+-..-+ +--++.++|-.+..+..-..+ |. .
T Consensus 351 Ai~~AL~Drvpd~~a~-~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~-~---------- 417 (649)
T KOG0822|consen 351 AILKALLDRVPDESAK-TTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NF-E---------- 417 (649)
T ss_pred HHHHHHHhhCcccccC-ceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-ch-h----------
Confidence 4888899888853222 256799999999988765432 235688999988766543321 00 0
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCeeEEeccccccccCCCceeEEEecc---cccCcchHHHHHHHHHHhcc
Q psy3185 176 VQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILK 252 (298)
Q Consensus 176 ~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~f---fidta~n~~~yl~~I~~~Lk 252 (298)
.-...++++.+|++.+..+.++-|++||-. |=|.. ==.++|.-+.+.||
T Consensus 418 ---------------------------~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNE-LSPECLDG~q~fLk 469 (649)
T KOG0822|consen 418 ---------------------------CWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNE-LSPECLDGAQKFLK 469 (649)
T ss_pred ---------------------------hhcCeeEEEeccccccCCchhhccchHHHhhccccCcc-CCHHHHHHHHhhcC
Confidence 012578899999999975558999988742 33322 12589999999999
Q ss_pred CCeEEE
Q psy3185 253 PGGIWI 258 (298)
Q Consensus 253 pGG~~I 258 (298)
|.|+.|
T Consensus 470 pdgIsI 475 (649)
T KOG0822|consen 470 PDGISI 475 (649)
T ss_pred CCceEc
Confidence 999998
No 254
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.51 E-value=0.42 Score=44.97 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=42.3
Q ss_pred HHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHH
Q psy3185 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 104 ~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l 161 (298)
++++.+.+.. .++..++|-=||.|..+..|++. ...|+|+|.++.++..++..+
T Consensus 9 l~Evl~~L~~----~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 9 LDEVVEGLNI----KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred HHHHHHhcCc----CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 3444444432 24668999999999999999976 367999999999999988754
No 255
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.47 E-value=0.11 Score=45.75 Aligned_cols=71 Identities=21% Similarity=0.180 Sum_probs=47.9
Q ss_pred CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCC-----CCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 223 NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNML-----NEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 223 ~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~-----~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
.++|.+++.-+|++ .....+...+++.|||||++... -|-.+-. ......++..-+++..++.||++.-|
T Consensus 129 ~~~yhdmh~k~i~~-~~A~~vna~vf~~LKPGGv~~V~----dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 129 AQNYHDMHNKNIHP-ATAAKVNAAVFKALKPGGVYLVE----DHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred chhhhhhhccccCc-chHHHHHHHHHHhcCCCcEEEEE----eccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 34555555555553 34567889999999999999743 2322210 11234578899999999999999877
Q ss_pred C
Q psy3185 298 S 298 (298)
Q Consensus 298 ~ 298 (298)
|
T Consensus 204 S 204 (238)
T COG4798 204 S 204 (238)
T ss_pred e
Confidence 5
No 256
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=95.29 E-value=0.09 Score=48.97 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+||+.|||. |..+..+|+. |+ .+.+++.|..+...++.. . . . .+ +.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g----~-~-~v---i~------------------ 216 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G----A-D-ET---VN------------------ 216 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C----C-C-EE---Ec------------------
Confidence 467899988876 7888888865 88 799999998887654431 0 0 0 00 00
Q ss_pred CCCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
.. . .. +..+....+.+|+|+.+..- ...++.+.+.|+++|.+|.+|.
T Consensus 217 -~~----~--~~-------~~~~~~~~~~vd~vld~~g~------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 217 -LA----R--DP-------LAAYAADKGDFDVVFEASGA------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -CC----c--hh-------hhhhhccCCCccEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 00 0 00 11111123458988765421 2457888999999999998763
No 257
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.27 E-value=0.41 Score=44.19 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=33.8
Q ss_pred eEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 122 NILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
+|+|+-||.|.+...+.+.|++ |.++|+++..+...+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~ 40 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEA 40 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHH
Confidence 7999999999999999999998 7899999998876554
No 258
>KOG3201|consensus
Probab=95.25 E-value=0.074 Score=45.51 Aligned_cols=63 Identities=24% Similarity=0.450 Sum_probs=47.3
Q ss_pred CCCceeEEEe--cccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEEe
Q psy3185 221 HPNKWDCVAT--CFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVE 297 (298)
Q Consensus 221 ~~~~fD~V~t--~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~~ 297 (298)
+..+||.|++ |.|+|-. -....++|+.+|+|.|.-+.+.| ...-|.+.+...+...||.+.-+
T Consensus 100 eq~tFDiIlaADClFfdE~--h~sLvdtIk~lL~p~g~Al~fsP------------RRg~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFDEH--HESLVDTIKSLLRPSGRALLFSP------------RRGQSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred hhCcccEEEeccchhHHHH--HHHHHHHHHHHhCcccceeEecC------------cccchHHHHHHHHHhceeEEEec
Confidence 3469998876 4566643 35789999999999998765555 33446888888999999998654
No 259
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.20 E-value=0.055 Score=49.80 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=75.5
Q ss_pred CeEEEecccCc--HHHHHHHHc---CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 121 VNILVPGAGLG--RLAFEIARR---GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 121 ~~VLdpGcG~G--rla~ela~~---G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
...||+|||+= ...+|+|+. ...|.-+|..+-.+.-++.+|...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~------------------------------- 118 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN------------------------------- 118 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------------------------------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-------------------------------
Confidence 46999999964 478999886 578999999999998888766421
Q ss_pred CCCCCCCCCCCCeeEEecccccccc--C----CCcee-----EEEe---cccccCcchHHHHHHHHHHhccCCeEEEEec
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV--H----PNKWD-----CVAT---CFFIDCANNIVSFIETIFNILKPGGIWINLG 261 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~--~----~~~fD-----~V~t---~ffidta~n~~~yl~~I~~~LkpGG~~In~g 261 (298)
+.+...++.+|+.+.-. . .+-+| +|+. ..|+...++....+.++...|-||.+++...
T Consensus 119 --------~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 119 --------PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp --------TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred --------CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 01236788888876421 1 14455 3333 3456566778999999999999999997321
Q ss_pred ------cc-------cccccCCCCCCccCCCHHHHHHHHHhCCCEEE
Q psy3185 262 ------PL-------LYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYE 295 (298)
Q Consensus 262 ------Pl-------~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~ 295 (298)
|. .|.. ...+...-|.+||.+++. ||+++
T Consensus 191 ~t~d~~p~~~~~~~~~~~~---~~~~~~~Rs~~ei~~~f~--g~elv 232 (267)
T PF04672_consen 191 ATDDGAPERAEALEAVYAQ---AGSPGRPRSREEIAAFFD--GLELV 232 (267)
T ss_dssp EB-TTSHHHHHHHHHHHHH---CCS----B-HHHHHHCCT--TSEE-
T ss_pred cCCCCCHHHHHHHHHHHHc---CCCCceecCHHHHHHHcC--CCccC
Confidence 10 0111 122344458999999885 88875
No 260
>KOG1562|consensus
Probab=95.08 E-value=0.063 Score=50.03 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=75.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC--CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG--YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G--~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+..+||++|-|-|....+.+++- -++.-+|+....+..++.-+. .
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p---------------------------------~ 167 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLP---------------------------------T 167 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhH---------------------------------H
Confidence 46799999999999999999882 347777887777766654322 1
Q ss_pred CCCCCCCCCCCeeEEecccccccc--CCCceeEEEecc--cccCcchH--HHHHHHHHHhccCCeEEEEecc
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVATCF--FIDCANNI--VSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~t~f--fidta~n~--~~yl~~I~~~LkpGG~~In~gP 262 (298)
+... -...++.+..||-..++. ..++||+|++-- -+-.+.++ ..|+..+.+.|||||+.+..|-
T Consensus 168 la~g--y~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 168 LACG--YEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred Hhcc--cCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 1110 012478888898655543 368999988631 22233343 4699999999999999987664
No 261
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.05 E-value=0.0071 Score=48.18 Aligned_cols=72 Identities=24% Similarity=0.435 Sum_probs=40.2
Q ss_pred ceeEEEecc---ccc--C-cchHHHHHHHHHHhccCCeEEEEeccccc---cccCC------CCCCccCCCHHHHHHHHH
Q psy3185 224 KWDCVATCF---FID--C-ANNIVSFIETIFNILKPGGIWINLGPLLY---HYSNM------LNEDSIEPSYEVVKQVIQ 288 (298)
Q Consensus 224 ~fD~V~t~f---fid--t-a~n~~~yl~~I~~~LkpGG~~In~gPl~y---~~~~~------~~~~~~~ls~eEl~~~~~ 288 (298)
+||+|++.- .|| + -+-+..+++.|+.+|+|||++| +-|=-| .-+-. .+-..+++.++++..++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 488886543 233 2 2348899999999999999998 444322 21100 011356788888999888
Q ss_pred h--CCCEEEE
Q psy3185 289 G--LGFVYEV 296 (298)
Q Consensus 289 ~--~GF~i~~ 296 (298)
. .||....
T Consensus 80 ~~evGF~~~e 89 (110)
T PF06859_consen 80 EPEVGFSSVE 89 (110)
T ss_dssp STTT---EEE
T ss_pred hcccceEEEE
Confidence 7 6998653
No 262
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.88 E-value=0.9 Score=40.71 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=81.6
Q ss_pred CCeEEEecccCcHHHHHHHHcCC--eEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGY--VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~--~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
+.++.|+||-=|+|+..|.+.+- .+++.|.++.-+..|.....+. +
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~------~-------------------------- 64 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN------N-------------------------- 64 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc------C--------------------------
Confidence 45699999999999999999974 4999999999998876533221 0
Q ss_pred CCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCccC
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIE 277 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ 277 (298)
+ ...++...||-......+..+|+|+-+=+ -..-+.+.|++-.+-|+.==.+| +-|.
T Consensus 65 ----l--~~~i~vr~~dgl~~l~~~d~~d~ivIAGM--GG~lI~~ILee~~~~l~~~~rlI-LQPn-------------- 121 (226)
T COG2384 65 ----L--SERIDVRLGDGLAVLELEDEIDVIVIAGM--GGTLIREILEEGKEKLKGVERLI-LQPN-------------- 121 (226)
T ss_pred ----C--cceEEEeccCCccccCccCCcCEEEEeCC--cHHHHHHHHHHhhhhhcCcceEE-ECCC--------------
Confidence 0 13566667776555445568997665421 12224455555555554212333 2231
Q ss_pred CCHHHHHHHHHhCCCEEEEeC
Q psy3185 278 PSYEVVKQVIQGLGFVYEVES 298 (298)
Q Consensus 278 ls~eEl~~~~~~~GF~i~~~~ 298 (298)
-...+|++++.+.+|+|..|.
T Consensus 122 ~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 122 IHTYELREWLSANSYEIKAET 142 (226)
T ss_pred CCHHHHHHHHHhCCceeeeee
Confidence 127899999999999998874
No 263
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.83 E-value=0.21 Score=47.92 Aligned_cols=41 Identities=20% Similarity=0.032 Sum_probs=34.8
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|||. |.++..+|+. |. .|.+++.+..++..++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 467899999998 9999999876 76 59999999999887664
No 264
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.81 E-value=0.25 Score=45.58 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
.+.+||+.||| +|..+.++|+. |..|++++-|..+...++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 46789998887 58999999875 899999999998876654
No 265
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.74 E-value=0.061 Score=48.97 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=48.3
Q ss_pred hHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHHHHhh
Q psy3185 93 SEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 93 ~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
-.||-..++.+.+++...+| ...+|||+|||+==++...... +..+.|.|++..|+...+..++.
T Consensus 85 T~ERl~~Ld~fY~~if~~~~------~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~ 151 (251)
T PF07091_consen 85 TRERLPNLDEFYDEIFGRIP------PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV 151 (251)
T ss_dssp HHCCGGGHHHHHHHHCCCS---------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHhcCC------CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 34777777777777776655 3679999999999999987655 46899999999999887776553
No 266
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.59 E-value=0.32 Score=47.64 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=30.2
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~Ml~~a~ 158 (298)
.+.+|+++|||. |+.+..+++ .|..|+.+|.++.-+..+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 578999999996 655555554 4889999999987655543
No 267
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.57 E-value=0.076 Score=51.22 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHH-cCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIAR-RGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~-~G~~v~g~D~S~~Ml 154 (298)
++.+|+++|+| .|+.+...++ .|..|+.+|.+..-+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~ 203 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL 203 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45689999998 6777777665 489999999987643
No 268
>KOG1501|consensus
Probab=94.52 E-value=0.051 Score=53.13 Aligned_cols=46 Identities=26% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHHHhh
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~l~~ 163 (298)
..+..|||+|.|||-|+.-.++.|.+ |+|+|.=..|..+|+.|..+
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k 111 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK 111 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc
Confidence 45677999999999999999999875 99999999999999998765
No 269
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.32 E-value=0.21 Score=51.67 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=51.0
Q ss_pred CCeeEEeccccccccC-CCceeEEEec-ccccCcchH----HHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCC
Q psy3185 206 CDFSMAAGDFLQVYVH-PNKWDCVATC-FFIDCANNI----VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPS 279 (298)
Q Consensus 206 ~~~~~~~gDf~~~~~~-~~~fD~V~t~-ffidta~n~----~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls 279 (298)
..+.+..||+.+.... ...+|++.-= |. .+.|. .+++..|.++++|||+++.+. +
T Consensus 147 ~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs--P~~np~~W~~~~~~~l~~~~~~~~~~~t~t-----------------~ 207 (662)
T PRK01747 147 VTLDLWFGDANELLPQLDARADAWFLDGFA--PAKNPDMWSPNLFNALARLARPGATLATFT-----------------S 207 (662)
T ss_pred EEEEEEecCHHHHHHhccccccEEEeCCCC--CccChhhccHHHHHHHHHHhCCCCEEEEee-----------------h
Confidence 3677899999876532 2457776431 21 33333 479999999999999998531 2
Q ss_pred HHHHHHHHHhCCCEEEE
Q psy3185 280 YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 280 ~eEl~~~~~~~GF~i~~ 296 (298)
..-+++-+..+||++.+
T Consensus 208 a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 208 AGFVRRGLQEAGFTVRK 224 (662)
T ss_pred HHHHHHHHHHcCCeeee
Confidence 56789999999999875
No 270
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.20 E-value=0.36 Score=45.92 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=16.6
Q ss_pred CCCCeEEEecccCcHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIAR 139 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~ 139 (298)
.+..+|+|+||..|..+..+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 4578999999999999987654
No 271
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.20 E-value=0.32 Score=42.88 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=34.5
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~ 158 (298)
-.+.+|||.|+|.|-.+..-|+.|.. |.+.|+.+....+.+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~ 119 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIR 119 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhh
Confidence 35789999999999999999999975 999999987665544
No 272
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.11 E-value=0.2 Score=50.41 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=67.2
Q ss_pred CCCeEEEecccCc-HHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGLG-RLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~G-rla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
++.+||++|||.= ..+..+++. |..|+++|.+..-+..++.. .. .+ +.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga-----~~---------------------v~v~- 214 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GA-----EF---------------------LELD- 214 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC-----eE---------------------Eecc-
Confidence 4679999999864 666666654 88999999999866655431 10 00 0111
Q ss_pred CCCCCCCCCCCeeEEeccccc-----cccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQ-----VYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~-----~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.....-...+--.....+|.+ +...-..+|+|+++-.|...+.+.-..+++-+.+|||++.|.+
T Consensus 215 ~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 215 FKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred ccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 000000000001111223321 1111256999999998887666555678888999999999864
No 273
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.97 E-value=0.59 Score=43.38 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=67.9
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++.+|||..||-|.=+..+|... ..++++|.|..-+...+..+++..
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g------------------------------ 134 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG------------------------------ 134 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT------------------------------
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC------------------------------
Confidence 46789999999999999998873 479999999998776655433211
Q ss_pred CCCCCCCCCCCCeeEEecccccccc--CCCceeEEE-----ecc-cccCc---------ch-------HHHHHHHHHHhc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV--HPNKWDCVA-----TCF-FIDCA---------NN-------IVSFIETIFNIL 251 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~--~~~~fD~V~-----t~f-fidta---------~n-------~~~yl~~I~~~L 251 (298)
..++.....|...... ....||.|. |.. .+..- .+ ..+.|+...+.+
T Consensus 135 ---------~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~ 205 (283)
T PF01189_consen 135 ---------VFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLL 205 (283)
T ss_dssp ----------SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCE
T ss_pred ---------CceEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhh
Confidence 1355566677766632 234588764 221 22211 11 225788888999
Q ss_pred ----cCCeEEE
Q psy3185 252 ----KPGGIWI 258 (298)
Q Consensus 252 ----kpGG~~I 258 (298)
||||++|
T Consensus 206 ~~~~k~gG~lv 216 (283)
T PF01189_consen 206 NIDFKPGGRLV 216 (283)
T ss_dssp HHHBEEEEEEE
T ss_pred cccccCCCeEE
Confidence 9999987
No 274
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.96 E-value=0.3 Score=46.06 Aligned_cols=39 Identities=26% Similarity=0.079 Sum_probs=28.8
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeC---CHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEF---SLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~---S~~Ml~~a 157 (298)
++.+||+.|||. |.++..+|+. |..|++++- |+.=+..+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~ 215 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV 215 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 467899999874 7788888875 889999886 55544433
No 275
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.84 E-value=0.6 Score=39.39 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=37.1
Q ss_pred ceeEEEecccccCcchHHHHHHH--HHHhccCCeEEEEeccccccccCCCCCCccCCCHHHHHHHHHhCCCEEEE
Q psy3185 224 KWDCVATCFFIDCANNIVSFIET--IFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 224 ~fD~V~t~ffidta~n~~~yl~~--I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~eEl~~~~~~~GF~i~~ 296 (298)
.-|+|++|. -....+.+.+.. +...|++|.++|+.+-..... ..++.+.+++.|...++
T Consensus 57 ~~dvvi~~v--~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~------------~~~~~~~~~~~g~~~vd 117 (163)
T PF03446_consen 57 QADVVILCV--PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPET------------SRELAERLAAKGVRYVD 117 (163)
T ss_dssp HBSEEEE-S--SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH------------HHHHHHHHHHTTEEEEE
T ss_pred cccceEeec--ccchhhhhhhhhhHHhhccccceEEEecCCcchhh------------hhhhhhhhhhccceeee
Confidence 348888875 233456677777 889999999999865432222 46677777777776654
No 276
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.77 E-value=0.12 Score=42.12 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=50.2
Q ss_pred CCeeEEecccccccc-CCCceeEEEec-ccccCcchH--HHHHHHHHHhccCCeEEEEeccccccccCCCCCCccCCCHH
Q psy3185 206 CDFSMAAGDFLQVYV-HPNKWDCVATC-FFIDCANNI--VSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYE 281 (298)
Q Consensus 206 ~~~~~~~gDf~~~~~-~~~~fD~V~t~-ffidta~n~--~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~~~ls~e 281 (298)
..+.+..||+.+... -...+|+|.-- |.=...+++ .++++.|+++++|||++.. |.. ..
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T-----ys~------------a~ 93 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT-----YSS------------AG 93 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----S--------------BH
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE-----eec------------hH
Confidence 468899999987654 24789987643 322222222 5899999999999999985 322 34
Q ss_pred HHHHHHHhCCCEEEE
Q psy3185 282 VVKQVIQGLGFVYEV 296 (298)
Q Consensus 282 El~~~~~~~GF~i~~ 296 (298)
-+++.+.++||++.+
T Consensus 94 ~Vr~~L~~aGF~v~~ 108 (124)
T PF05430_consen 94 AVRRALQQAGFEVEK 108 (124)
T ss_dssp HHHHHHHHCTEEEEE
T ss_pred HHHHHHHHcCCEEEE
Confidence 589999999999975
No 277
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.56 E-value=0.54 Score=47.07 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhccCChHHHhhhhH--HHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C-----CeEEEee
Q psy3185 77 VQTTLKQFVRDWSEEGSEERKTCYE--PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G-----YVCQGNE 148 (298)
Q Consensus 77 v~~~l~~~~RdWs~~g~~ER~~~~~--~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G-----~~v~g~D 148 (298)
+-.+.--+.+.|..+...+--+-|- .|.+.+.+.+.+. ...+|.||-||+|.+....++. + ...+|.|
T Consensus 146 ~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~----~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE 221 (489)
T COG0286 146 FGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPE----PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQE 221 (489)
T ss_pred hhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCC----CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEe
Confidence 3344444555555433222111111 2555566555432 2349999999999987766543 1 3489999
Q ss_pred CCHHHHHHHHH
Q psy3185 149 FSLFMLFASNF 159 (298)
Q Consensus 149 ~S~~Ml~~a~~ 159 (298)
....++..++.
T Consensus 222 ~~~~t~~l~~m 232 (489)
T COG0286 222 INDTTYRLAKM 232 (489)
T ss_pred CCHHHHHHHHH
Confidence 99999877654
No 278
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.49 E-value=0.18 Score=44.73 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=45.6
Q ss_pred HHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc-C-CeEEEeeCCHHHHH
Q psy3185 84 FVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR-G-YVCQGNEFSLFMLF 155 (298)
Q Consensus 84 ~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~-G-~~v~g~D~S~~Ml~ 155 (298)
=+|.|.+.... .-..|+.-|.. +|- +++.+||=+|+-+|..+-.++.- | ..++|+|+|+.|..
T Consensus 50 eYR~Wnp~RSK----LaAaIl~Gl~~-~pi----~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r 114 (231)
T COG1889 50 EYREWNPRRSK----LAAAILKGLKN-FPI----KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR 114 (231)
T ss_pred ceeeeCcchhH----HHHHHHcCccc-CCc----CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH
Confidence 48889875422 22235555542 342 46789999999999999999886 5 45999999999864
No 279
>KOG4058|consensus
Probab=93.42 E-value=0.12 Score=43.62 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=37.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+.+|+|+|-||+...-|+.| +..+|+|+.+-.+..++.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 56899999999999999999999 789999999998887765
No 280
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.35 E-value=0.46 Score=41.95 Aligned_cols=40 Identities=30% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+|. |..+..+++. |..|.+++.+......++
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 467999999994 8888888765 889999999987665443
No 281
>KOG2872|consensus
Probab=93.33 E-value=1.4 Score=41.07 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=55.0
Q ss_pred HHHHHhhhccCChHHHh-----hhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 81 LKQFVRDWSEEGSEERK-----TCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 81 l~~~~RdWs~~g~~ER~-----~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+-|+...|..+-.+|-- +-...|.+++++.+|.. .....-+....-|.|.+.-+|++.||+|.|.||+-.|.+
T Consensus 209 ~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~--~~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~e 286 (359)
T KOG2872|consen 209 ALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPEL--GLAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAE 286 (359)
T ss_pred HHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhh--cCCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHH
Confidence 34566677765555432 22234666777777632 233456888899999999999999999999999999988
Q ss_pred HHHH
Q psy3185 156 ASNF 159 (298)
Q Consensus 156 ~a~~ 159 (298)
+-+-
T Consensus 287 ar~~ 290 (359)
T KOG2872|consen 287 ARRR 290 (359)
T ss_pred HHHh
Confidence 6543
No 282
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.23 E-value=0.51 Score=44.38 Aligned_cols=157 Identities=16% Similarity=0.274 Sum_probs=85.6
Q ss_pred HHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCC---------CCCCCeEEEecccCcHHHHHHHHcC---------
Q psy3185 80 TLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETI---------NPKDVNILVPGAGLGRLAFEIARRG--------- 141 (298)
Q Consensus 80 ~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~---------~~~~~~VLdpGcG~Grla~ela~~G--------- 141 (298)
-|.-++-.||+ -|..||.-|...|.++...... ..+..+||++|-|.|--...||..-
T Consensus 42 ~L~AYA~RWSP----sRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s 117 (315)
T PF11312_consen 42 KLEAYAARWSP----SRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLS 117 (315)
T ss_pred hhhhheeccCH----HHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCC
Confidence 44455666776 5788898888887776532211 2234799999999987655555422
Q ss_pred -------------CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCe
Q psy3185 142 -------------YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDF 208 (298)
Q Consensus 142 -------------~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~ 208 (298)
.+++++|+..=--...+- +.+ .+--|=+..+.+ ....|.+. +...++
T Consensus 118 ~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L--~~~-----i~s~p~~sk~a~---------~~~~~~~~----~~~~~~ 177 (315)
T PF11312_consen 118 KSPSGVSLSSPPSLSITLVDIADWSSVVDRL--TTT-----ITSPPPLSKYAS---------AANWPLIE----PDRFNV 177 (315)
T ss_pred cccccccccCCCcceEEEEEecChHHHHHHH--HHh-----ccCCCCcccccc---------ccccccCC----ccceee
Confidence 367777765432222211 111 010111111100 00011222 223578
Q ss_pred eEEeccccccccCC-------CceeEEEeccccc-----CcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 209 SMAAGDFLQVYVHP-------NKWDCVATCFFID-----CANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 209 ~~~~gDf~~~~~~~-------~~fD~V~t~ffid-----ta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
.|.+.|......++ .+.+.|...|-+. ....=..+|..+...++||-+++.+
T Consensus 178 ~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 178 SFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred eEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 89999988875422 1344444334232 2223346899999999999888643
No 283
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=93.05 E-value=0.6 Score=43.15 Aligned_cols=39 Identities=28% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.||| .|..+..+|+. |..|.+++-|..++...
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA 202 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46789999997 89998888876 99999999999877654
No 284
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.04 E-value=0.65 Score=42.74 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=30.7
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
+|..+|+|. |.++..|++.|++|.+.|.++..+..+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~ 40 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAI 40 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 688999986 6688888889999999999988765543
No 285
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.97 E-value=4.2 Score=37.02 Aligned_cols=126 Identities=16% Similarity=0.095 Sum_probs=68.6
Q ss_pred CCCeEEEecccC-cHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCC
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDI 197 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~ 197 (298)
.+.+||++|=+= -.+|..|....-+|+.+|+...++..-+....+.
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~--------------------------------- 90 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE--------------------------------- 90 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH---------------------------------
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc---------------------------------
Confidence 467999999542 2345555555678999999999998776643220
Q ss_pred CCCCCCCCCCeeEEeccccccccCC--CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEeccccccccCCCCCCc
Q psy3185 198 NTSDYNDDCDFSMAAGDFLQVYVHP--NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDS 275 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~gDf~~~~~~~--~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~~~~~~~~~~ 275 (298)
+-++.....|+..-.++. ++||+++|-= -.|.+-+.-++.+-...||.-|..+- +++. .
T Consensus 91 -------gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-PyT~~G~~LFlsRgi~~Lk~~g~~gy-----~~~~------~ 151 (243)
T PF01861_consen 91 -------GLPIEAVHYDLRDPLPEELRGKFDVFFTDP-PYTPEGLKLFLSRGIEALKGEGCAGY-----FGFT------H 151 (243)
T ss_dssp -------T--EEEE---TTS---TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEE-----EEE-------T
T ss_pred -------CCceEEEEecccccCCHHHhcCCCEEEeCC-CCCHHHHHHHHHHHHHHhCCCCceEE-----EEEe------c
Confidence 013566677776654443 9999988731 11667788899999999996553221 2222 1
Q ss_pred cCCC---HHHHHHHHHhCCCEEEE
Q psy3185 276 IEPS---YEVVKQVIQGLGFVYEV 296 (298)
Q Consensus 276 ~~ls---~eEl~~~~~~~GF~i~~ 296 (298)
.+-| +-++.+.+...||.|..
T Consensus 152 ~~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 152 KEASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp TT--HHHHHHHHHHHHTS--EEEE
T ss_pred CcCcHHHHHHHHHHHHHCCcCHHH
Confidence 1223 34788899999998864
No 286
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.88 E-value=1.1 Score=41.29 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=32.6
Q ss_pred eEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 122 NILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 122 ~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
+++|+=||.|.+..-+.+.|++ |.|+|+++......+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~ 40 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKA 40 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhh
Confidence 7899999999999999999997 7899999997766554
No 287
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.84 E-value=0.3 Score=42.39 Aligned_cols=51 Identities=20% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
+++.|.+.+. .++..||||=||+|..+....+.|-...|+|+++.....|+
T Consensus 180 l~~~lI~~~t-----~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 180 LIERLIKAST-----NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHS------TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHhhh-----ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 5555555543 24789999999999999999999999999999999888775
No 288
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.75 E-value=0.51 Score=44.67 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.5
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ |.|.++..+|+. |..|.+++-|..-+..+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~ 199 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL 199 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 5679999998 589999999976 89999999988766544
No 289
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.67 E-value=0.63 Score=43.84 Aligned_cols=40 Identities=15% Similarity=-0.137 Sum_probs=28.5
Q ss_pred CCCeEEEecccC-cHHHHHHHHc--C-CeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR--G-YVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~--G-~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|||. |.++..+|++ | ..|+++|.|+.-+..++
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 467999999864 4455666763 4 57999999987655543
No 290
>KOG2187|consensus
Probab=92.54 E-value=0.17 Score=50.40 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCH
Q psy3185 72 TDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~ 151 (298)
+......+.|..+++||.... .+.-+||+-||||-++..+|+.--.|.|+|+|+
T Consensus 362 Q~Nt~~aevLys~i~e~~~l~--------------------------~~k~llDv~CGTG~iglala~~~~~ViGvEi~~ 415 (534)
T KOG2187|consen 362 QTNTSAAEVLYSTIGEWAGLP--------------------------ADKTLLDVCCGTGTIGLALARGVKRVIGVEISP 415 (534)
T ss_pred ccCcHHHHHHHHHHHHHhCCC--------------------------CCcEEEEEeecCCceehhhhccccceeeeecCh
Confidence 334566777888888887643 246899999999999999999988999999999
Q ss_pred HHHHHHHH
Q psy3185 152 FMLFASNF 159 (298)
Q Consensus 152 ~Ml~~a~~ 159 (298)
..+.-|+.
T Consensus 416 ~aV~dA~~ 423 (534)
T KOG2187|consen 416 DAVEDAEK 423 (534)
T ss_pred hhcchhhh
Confidence 98887765
No 291
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.43 E-value=0.22 Score=39.67 Aligned_cols=89 Identities=19% Similarity=0.286 Sum_probs=55.4
Q ss_pred cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCC
Q psy3185 129 GLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCD 207 (298)
Q Consensus 129 G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~ 207 (298)
|.|.++..+|+. |..|.++|.|..=+..++.. ... .++.. . ..+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~--Ga~--------~~~~~-------------------~------~~~ 45 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL--GAD--------HVIDY-------------------S------DDD 45 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--TES--------EEEET-------------------T------TSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh--ccc--------ccccc-------------------c------ccc
Confidence 679999999976 98999999999877666541 000 00000 0 001
Q ss_pred eeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 208 FSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 208 ~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
......++ .....+|+|+-|- .+ ...++...++|+|||.++.+|-
T Consensus 46 ---~~~~i~~~-~~~~~~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 46 ---FVEQIREL-TGGRGVDVVIDCV-----GS-GDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp ---HHHHHHHH-TTTSSEEEEEESS-----SS-HHHHHHHHHHEEEEEEEEEESS
T ss_pred ---cccccccc-cccccceEEEEec-----Cc-HHHHHHHHHHhccCCEEEEEEc
Confidence 00001111 1235799988653 22 4688899999999999998763
No 292
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.10 E-value=1.5 Score=42.89 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCCeEEEecccC-cHHHHHHHH-cCCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIAR-RGYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~-~G~~v~g~D~S~~M 153 (298)
.+.+|+++|+|. |+.....++ .|.+|+++|.++.-
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r 230 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIR 230 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhh
Confidence 477999999986 554444444 48899999998864
No 293
>PHA01634 hypothetical protein
Probab=92.08 E-value=0.37 Score=39.72 Aligned_cols=43 Identities=19% Similarity=0.023 Sum_probs=38.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNFI 160 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~~ 160 (298)
-.+.+|+|+|++.|--|..++-+|.. |.++|.++.+....+..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHH
Confidence 35779999999999999999999985 99999999998777663
No 294
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.89 E-value=0.22 Score=49.48 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCceeEEEeccccc---CcchHHHHHHHHHHhccCCeEEEE
Q psy3185 222 PNKWDCVATCFFID---CANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 222 ~~~fD~V~t~ffid---ta~n~~~yl~~I~~~LkpGG~~In 259 (298)
+.+||.|-+...+. .--++...+-+|-|+|+|||..|.
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 58999887654322 234588899999999999999874
No 295
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.83 E-value=0.055 Score=45.95 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=51.4
Q ss_pred ccccCCCceeEEEeccccc--CcchHHHHHHHHHHhccCCeEEEEecc-cc-----cccc---CCCC---CCc--cCCCH
Q psy3185 217 QVYVHPNKWDCVATCFFID--CANNIVSFIETIFNILKPGGIWINLGP-LL-----YHYS---NMLN---EDS--IEPSY 280 (298)
Q Consensus 217 ~~~~~~~~fD~V~t~ffid--ta~n~~~yl~~I~~~LkpGG~~In~gP-l~-----y~~~---~~~~---~~~--~~ls~ 280 (298)
+..+.+++.|+|....++. |...-..+++..++.|||||++-..-| +. |... +.++ .|. +-.+.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~ 119 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTM 119 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHH
Confidence 4446789999999888877 456677899999999999999865555 32 2210 1111 111 11356
Q ss_pred HHHHHHHHhCCCEE
Q psy3185 281 EVVKQVIQGLGFVY 294 (298)
Q Consensus 281 eEl~~~~~~~GF~i 294 (298)
.++..++...||+.
T Consensus 120 r~m~n~~m~~~~~~ 133 (185)
T COG4627 120 RMMFNGFMDAGFVV 133 (185)
T ss_pred HHHHHHHHhhhhee
Confidence 67777777777764
No 296
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=91.58 E-value=0.92 Score=42.16 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=31.4
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+|. |..+..+|+. |+.|+++.-|.......
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFA 199 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHH
Confidence 466899988874 8888888876 99999998888876544
No 297
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.50 E-value=1.6 Score=40.97 Aligned_cols=41 Identities=12% Similarity=-0.059 Sum_probs=31.2
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.||| .|.++..+|+. |..|.+++.|..=+..++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 46799999975 56677777765 8889999999876655543
No 298
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.23 E-value=2.9 Score=38.83 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=27.6
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|-.+|+|. +.++..|++.|++|.+.|.++.-...
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~ 38 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKA 38 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 578888876 44777788889999999999875543
No 299
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.19 E-value=1.1 Score=42.80 Aligned_cols=40 Identities=30% Similarity=0.216 Sum_probs=32.6
Q ss_pred CCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
+.+|++.|||. |-++..+|+. |. .|.++|.++.=+..|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 34899999996 7777777776 64 59999999999988876
No 300
>KOG2651|consensus
Probab=91.18 E-value=0.76 Score=44.41 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=36.3
Q ss_pred CCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHh
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
-..|.|+|+|-|.|+..|+-. |..|.|||-|...-+.|+.+-.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLdk 197 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLDK 197 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHHH
Confidence 358999999999999999855 8899999999887777776543
No 301
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.15 E-value=1.6 Score=40.36 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|..+..+|+. |.. |.+++-|......+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~ 200 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA 200 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 46789998876 57888888876 777 89999998876654
No 302
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.13 E-value=1.2 Score=41.60 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 118 PKDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 118 ~~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
+++.+||+.|+ |.|.++..+|+. |..|.+..-|..-...+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~ 192 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL 192 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 35789999996 789999999976 99999998887755544
No 303
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.95 E-value=1.4 Score=39.55 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
.++.+||+.|||. |..+..+|+. |.. |.+++-+...+..++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE 139 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH
Confidence 3567899998876 7787888875 888 999999988766544
No 304
>PRK13699 putative methylase; Provisional
Probab=90.93 E-value=1.1 Score=40.35 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=44.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
+++.+.+.+. .++..||||=||+|..+..-.+.|-.+.|+|+++.....+...+.
T Consensus 152 l~~~~i~~~s-----~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 152 SLQPLIESFT-----HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred HHHHHHHHhC-----CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 4455544443 246799999999999999999999999999999999888876554
No 305
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.93 E-value=1.1 Score=42.24 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=31.6
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
.++.+||+.||| .|.++..+|+. |.. |.++|-+..-+..++.
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 356799999885 36677778875 875 9999999887666543
No 306
>KOG3115|consensus
Probab=90.87 E-value=0.15 Score=45.25 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=29.2
Q ss_pred CCCeEEEecccCcHHHHHHHHcCCe--EEEeeCCHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRGYV--CQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G~~--v~g~D~S~~M 153 (298)
+...+.|+|||-|.|..+|+.+.-+ +.|.|+-...
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KV 96 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKV 96 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHH
Confidence 3578999999999999999998654 8898886553
No 307
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.87 E-value=4.2 Score=37.79 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=27.0
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|-.+|+|. ..++..|++.|++|++.|.++.-..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~ 37 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVE 37 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence 688888885 3477778888999999999986543
No 308
>PLN02494 adenosylhomocysteinase
Probab=90.85 E-value=1.5 Score=43.78 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~M 153 (298)
.+.+|+++|+| .++..+|+ .|..|.++|.++.-
T Consensus 253 aGKtVvViGyG--~IGr~vA~~aka~Ga~VIV~e~dp~r 289 (477)
T PLN02494 253 AGKVAVICGYG--DVGKGCAAAMKAAGARVIVTEIDPIC 289 (477)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 46799999998 34444433 48899999998763
No 309
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=90.59 E-value=1.1 Score=41.61 Aligned_cols=37 Identities=30% Similarity=0.138 Sum_probs=30.5
Q ss_pred CeEEEecc--cCcHHHHHHHHc-CC-eEEEeeCCHHHHHHH
Q psy3185 121 VNILVPGA--GLGRLAFEIARR-GY-VCQGNEFSLFMLFAS 157 (298)
Q Consensus 121 ~~VLdpGc--G~Grla~ela~~-G~-~v~g~D~S~~Ml~~a 157 (298)
.+||+.|+ |+|..+..+|+. |. .|.+++-|......+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~ 196 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLL 196 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 79999986 789999999876 88 799999988765543
No 310
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.48 E-value=1.3 Score=40.63 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=32.0
Q ss_pred CCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.| .|+|.++..+|+. |..|.+++-|..-...++
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~ 185 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLK 185 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 467999998 4789999999876 889999998887555443
No 311
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.47 E-value=2.6 Score=39.91 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
..+++|+=||.|.+..-+...||+ +.++|+.+..+...+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~ 43 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKA 43 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHH
Confidence 568999999999999999999998 7799999998876554
No 312
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=90.34 E-value=1.2 Score=41.30 Aligned_cols=40 Identities=25% Similarity=0.133 Sum_probs=30.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+| +|..+..+|+. |. .|.+++-+......++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAK 209 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 46789998876 57888888876 75 7888888887765544
No 313
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.34 E-value=2.1 Score=41.97 Aligned_cols=36 Identities=22% Similarity=0.118 Sum_probs=29.1
Q ss_pred CeEEEecccCcH--HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGLGR--LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~Gr--la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|-++|.|... +|..|++.|++|+|+|.++.-+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 579999999654 555578889999999999986654
No 314
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.27 E-value=3 Score=38.45 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=28.9
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
.+|-++|+|. +.++..+++.|++|.+.|.+..-+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~ 39 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVA 39 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHH
Confidence 3789999996 4578889999999999999987544
No 315
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=90.15 E-value=1.9 Score=39.90 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=32.1
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ |.|.++..+|+. |..|.+++-|..-...++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 5679999994 689999999976 889999998887655443
No 316
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=89.74 E-value=1.5 Score=41.38 Aligned_cols=41 Identities=12% Similarity=-0.159 Sum_probs=32.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc--CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR--GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~--G~~v~g~D~S~~Ml~~a~~ 159 (298)
++..++|-=-|.|..+..+.++ +..|.|+|-.+.++..++.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~ 62 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKE 62 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHC
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHH
Confidence 4679999999999999999876 5689999999999987764
No 317
>PTZ00357 methyltransferase; Provisional
Probab=89.61 E-value=2.4 Score=44.14 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhhhccCChHHH--hhhhHHHHHHH-----HhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc----C-
Q psy3185 74 LEKVQTTLKQFVRDWSEEGSEER--KTCYEPIISEI-----LARFPPETINPKDVNILVPGAGLGRLAFEIARR----G- 141 (298)
Q Consensus 74 ~~~v~~~l~~~~RdWs~~g~~ER--~~~~~~i~~~l-----~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~----G- 141 (298)
.++-.+++.+..+||-..++... ++ .-+.. ....|....+.....|+++|||-|-|.-..-+. |
T Consensus 652 YdqYE~AI~kAL~Dw~~~~~~~~~~~~----ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~gv 727 (1072)
T PTZ00357 652 YRQYREAVFHYVRDWYAAGAEQQHAHQ----NSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALGV 727 (1072)
T ss_pred HHHHHHHHHHHHHHhhhcccccccccc----ccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcCC
Confidence 45667888899999976443210 00 00010 111222111123357999999999987664332 4
Q ss_pred -CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCCCCCCCCCCeeEEecccccccc
Q psy3185 142 -YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV 220 (298)
Q Consensus 142 -~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~~~~~~~~~~~~~~gDf~~~~~ 220 (298)
+.|.++|-++..+...... .. .... | .+. + ...+..+.++.+|..++..
T Consensus 728 kVrIyAVEKNPpAA~~tllr--~~-N~ee-----W----~n~-------------~-----~~~G~~VtII~sDMR~W~~ 777 (1072)
T PTZ00357 728 RLRIFAIEKNLPAAAFTRMR--WA-NDPE-----W----TQL-------------A-----YTFGHTLEVIVADGRTIAT 777 (1072)
T ss_pred cEEEEEEecCcchHHHHHHH--Hh-cccc-----c----ccc-------------c-----ccCCCeEEEEeCccccccc
Confidence 5799999995522211111 10 0001 1 000 0 0012467888888888743
Q ss_pred C-----------CCceeEEEecc---cccCcchHHHHHHHHHHhccC----CeE
Q psy3185 221 H-----------PNKWDCVATCF---FIDCANNIVSFIETIFNILKP----GGI 256 (298)
Q Consensus 221 ~-----------~~~fD~V~t~f---fidta~n~~~yl~~I~~~Lkp----GG~ 256 (298)
+ -++.|+|||-. |=|.- ==.+.|.-+.+.||+ +|+
T Consensus 778 pe~~~s~~~P~~~gKaDIVVSELLGSFGDNE-LSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 778 AAENGSLTLPADFGLCDLIVSELLGSLGDNE-LSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccccccceehHhhhccccccc-CCHHHHHHHHHhhhhhcccccc
Confidence 2 14799999842 33321 124788888888886 665
No 318
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=89.57 E-value=20 Score=34.47 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHHHhhhccC---ChHHHhhhhHHHHHHHHhh---CCCCCCCCCCCeEEEec-ccC--cHHHHHHHHcCC
Q psy3185 72 TDLEKVQTTLKQFVRDWSEE---GSEERKTCYEPIISEILAR---FPPETINPKDVNILVPG-AGL--GRLAFEIARRGY 142 (298)
Q Consensus 72 ~~~~~v~~~l~~~~RdWs~~---g~~ER~~~~~~i~~~l~~~---~p~~~~~~~~~~VLdpG-cG~--Grla~ela~~G~ 142 (298)
.|-.+..+.+..+ +.|+.+ ....-...|..|++.-... .......+...+|.++| .|+ |.++..|.+.|+
T Consensus 45 ~d~~Re~~vl~~~-~~~~~~~~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~ 123 (374)
T PRK11199 45 YVPEREAAMLASR-RAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY 123 (374)
T ss_pred CChHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCC
Confidence 3445555555444 334442 2222344566666443221 11111122346899998 555 445666667799
Q ss_pred eEEEeeCCH
Q psy3185 143 VCQGNEFSL 151 (298)
Q Consensus 143 ~v~g~D~S~ 151 (298)
.|++.|.+.
T Consensus 124 ~V~~~d~~~ 132 (374)
T PRK11199 124 QVRILEQDD 132 (374)
T ss_pred eEEEeCCCc
Confidence 999999764
No 319
>PRK11524 putative methyltransferase; Provisional
Probab=89.52 E-value=0.62 Score=43.12 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=38.2
Q ss_pred CeeEEeccccccc--cCCCceeEEEe--cccccCc--------------chHHHHHHHHHHhccCCeEEEE
Q psy3185 207 DFSMAAGDFLQVY--VHPNKWDCVAT--CFFIDCA--------------NNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 207 ~~~~~~gDf~~~~--~~~~~fD~V~t--~ffidta--------------~n~~~yl~~I~~~LkpGG~~In 259 (298)
+-.+..||..++. .+++++|+|+| -|++... .-+..++..+.++|||||.++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4467889988753 25689999999 4765210 1134688999999999998864
No 320
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.29 E-value=1.8 Score=40.59 Aligned_cols=42 Identities=19% Similarity=0.010 Sum_probs=31.4
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
+++.+||+.|+| .|..+..+|+. |.. |.+++-+...+..++.
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 346789998877 67777778876 884 9999999877665543
No 321
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.28 E-value=1.4 Score=41.81 Aligned_cols=41 Identities=20% Similarity=0.084 Sum_probs=30.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| +|.++..+|+. |. .|.++|.+..-+..++.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 46789999875 36677777765 88 59999999987766543
No 322
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.27 E-value=2.2 Score=39.81 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=30.6
Q ss_pred CCCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 118 PKDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 118 ~~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
.++.+||+-|+|. |..+..+|+. |.. |.+++-|......+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~ 203 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA 203 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 3567888887765 7888888876 887 89998888766544
No 323
>PRK11524 putative methyltransferase; Provisional
Probab=89.10 E-value=1.5 Score=40.51 Aligned_cols=55 Identities=16% Similarity=0.021 Sum_probs=46.2
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
+++.|.+.+. .++..||||=||+|..+..-.+.|-...|+|++++-...|...+.
T Consensus 197 L~erlI~~~S-----~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 197 LLKRIILASS-----NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHhC-----CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 5566555543 357899999999999999999999999999999999988887664
No 324
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.04 E-value=3.8 Score=36.73 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=24.7
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
+.+||+.|++ .|+ ++..|++.|++|..++-+..
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5689999963 333 55566777999999998865
No 325
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=88.96 E-value=2.1 Score=42.72 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=24.7
Q ss_pred CCCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLFM 153 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~M 153 (298)
-.+.+|+++|+|. .+..+|+ .|..|+..|.++.-
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~ 289 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPIC 289 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchh
Confidence 3578999999985 4444443 48899999888753
No 326
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.69 E-value=6.5 Score=36.48 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=25.6
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|-.+|+|. +.++..|++.|+.|++.|-++.....
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~ 38 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDV 38 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 577787765 34666677789999999999875543
No 327
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.42 E-value=2.8 Score=38.97 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=28.0
Q ss_pred CeEEEecccC--cHHHHHHHHcCC--eEEEeeCCHHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGY--VCQGNEFSLFMLFAS 157 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~--~v~g~D~S~~Ml~~a 157 (298)
.+|.++|+|. +.++..|++.|+ .|++.|.++.-+..+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a 47 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA 47 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH
Confidence 5899999887 346666777785 799999998755443
No 328
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=88.20 E-value=3.7 Score=38.59 Aligned_cols=118 Identities=18% Similarity=0.115 Sum_probs=78.3
Q ss_pred CCCeEEEecccCcHHHHHHHHcC---CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPGAGLGRLAFEIARRG---YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~G---~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
++...+|-=-|.|..+..+-.++ ..++|+|-.+.++..|+.++..
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-------------------------------- 70 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-------------------------------- 70 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc--------------------------------
Confidence 46789999999999999998875 4699999999999999886531
Q ss_pred CCCCCCCCCCCCeeEEecccccccc-----CCCceeEE-----EecccccCcchHHHHHHHHHHhccCCeE-EEEecccc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV-----HPNKWDCV-----ATCFFIDCANNIVSFIETIFNILKPGGI-WINLGPLL 264 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~-----~~~~fD~V-----~t~ffidta~n~~~yl~~I~~~LkpGG~-~In~gPl~ 264 (298)
...+++++.+.|.++.. .-+++|.| ||++-||.++. |. +-.-|||-
T Consensus 71 --------~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~DLGVSS~QLD~~eR---------------GFSf~~d~pLD 127 (314)
T COG0275 71 --------FDGRVTLVHGNFANLAEALKELGIGKVDGILLDLGVSSPQLDDAER---------------GFSFRKDGPLD 127 (314)
T ss_pred --------cCCcEEEEeCcHHHHHHHHHhcCCCceeEEEEeccCCccccCCCcC---------------CcccCCCCCcc
Confidence 12478889998877653 12567765 57777776642 22 12235553
Q ss_pred ccccCCCC----CCccCCCHHHHHHHHHhCC
Q psy3185 265 YHYSNMLN----EDSIEPSYEVVKQVIQGLG 291 (298)
Q Consensus 265 y~~~~~~~----~~~~~ls~eEl~~~~~~~G 291 (298)
-.-....+ +---.++.+||..++.++|
T Consensus 128 MRMd~~~~lsA~evvN~~~e~~L~~I~~~yG 158 (314)
T COG0275 128 MRMDQTQGLSAAEVVNTYSEEDLARIFKEYG 158 (314)
T ss_pred cCcCCCCCCCHHHHHhcCCHHHHHHHHHHhc
Confidence 22110000 0012377888888888777
No 329
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.69 E-value=2.5 Score=40.01 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=69.2
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
.+.+|.++|-|. |..+-.+|-- |.+|+-.|+|..-|.....+.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---------------------------------- 212 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---------------------------------- 212 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----------------------------------
Confidence 467899999985 6677777754 8999999999876544333211
Q ss_pred CCCCCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
.++...-.....+...-.+.|+|+..-.|--+..+.-..+++-+.+|||+++|.
T Consensus 213 ---------~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 213 ---------GRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ---------ceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 123333222222222236789999999898888888889999999999999974
No 330
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=87.65 E-value=2.2 Score=40.57 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=26.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~M 153 (298)
++.+||+.||| .|.++..+|+. |..|.+++.+..-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~ 219 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNK 219 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence 46789998885 56677777765 8889888887653
No 331
>KOG2920|consensus
Probab=87.60 E-value=0.39 Score=44.52 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=40.7
Q ss_pred hhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcC-CeEEEeeCCHHHH
Q psy3185 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRG-YVCQGNEFSLFML 154 (298)
Q Consensus 99 ~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G-~~v~g~D~S~~Ml 154 (298)
|--.+++.+.+.+ .....-.+.+|||+|||.|-........| ..|...|+|..-+
T Consensus 97 cS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 97 CSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred cHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 3344566666443 11222357899999999999999999999 6799999998866
No 332
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.48 E-value=31 Score=34.51 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=35.4
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
....+++|+=||.|.+..-+-..|++ |.++|+........+.
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~ 128 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKA 128 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHH
Confidence 34679999999999999999888997 6799999987776543
No 333
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.47 E-value=3.1 Score=40.96 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=24.7
Q ss_pred CCCeEEEecccC-cHHHHHH-HHcCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEI-ARRGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~el-a~~G~~v~g~D~S~~Ml 154 (298)
.+.+|+++|+|. |+..... ...|.+|+.+|.++.-.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 467999999974 3322222 23488999999998644
No 334
>KOG1596|consensus
Probab=87.37 E-value=2.1 Score=39.06 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=29.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCe--EEEeeCCHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYV--CQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~--v~g~D~S~~ 152 (298)
++.+||=+|++.|+..-.++.- |-+ |+|+|+|.-
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~r 192 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHR 192 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEeccc
Confidence 5789999999999999988886 544 999999975
No 335
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.96 E-value=2.9 Score=39.64 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=26.1
Q ss_pred CCCeEEEecccC-cH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 119 KDVNILVPGAGL-GR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
.+.+|..+|+|. |+ +|..++..|++|.+.|.+..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~ 180 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN 180 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 456899999887 43 55556667999999998864
No 336
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.95 E-value=8.4 Score=36.20 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=31.3
Q ss_pred EEEecccCcHHHHHHHHcCCe-EEEeeCCHHHHHHHHH
Q psy3185 123 ILVPGAGLGRLAFEIARRGYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 123 VLdpGcG~Grla~ela~~G~~-v~g~D~S~~Ml~~a~~ 159 (298)
|+|+=||.|.+..-+.+.|++ +.++|++.......+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~ 38 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEA 38 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHH
Confidence 588999999999999999998 5689999987776543
No 337
>KOG1201|consensus
Probab=86.94 E-value=23 Score=33.21 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+...+...+|....+-++..||.=|.|.| | +|.|+|++|..+.-.|....-...
T Consensus 21 ~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~e 77 (300)
T KOG1201|consen 21 LESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEE 77 (300)
T ss_pred HHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHH
Confidence 44445555554333456778999877655 5 789999999999999998775543
No 338
>PRK08339 short chain dehydrogenase; Provisional
Probab=86.83 E-value=15 Score=33.05 Aligned_cols=36 Identities=17% Similarity=-0.042 Sum_probs=27.5
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+..+|+-|++ .|+ ++..|++.|++|..++-+..-+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~ 46 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLK 46 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5578999975 454 66778888999999998876443
No 339
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.69 E-value=3 Score=37.91 Aligned_cols=41 Identities=29% Similarity=0.143 Sum_probs=30.2
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| .|.++..+|+. |.. |.++|.+..-+..++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 46789999885 56677777765 886 9999998876665543
No 340
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=86.67 E-value=3.6 Score=38.25 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=24.8
Q ss_pred CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 223 NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 223 ~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
..+|+|+.+. .. ...++.+.+.|+++|.++++|.
T Consensus 234 ~~~d~vld~~-----g~-~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 234 RGVDVVIEAV-----GI-PATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCEEEECC-----CC-HHHHHHHHHhccCCcEEEEecc
Confidence 4588887554 11 2347888899999999998874
No 341
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=86.67 E-value=5.7 Score=36.97 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=28.0
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+-|+| +|..+..+|+. |.. |.+++-|..-...++
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~ 203 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAK 203 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 46688886665 57777777765 886 888888876555443
No 342
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=86.64 E-value=9 Score=34.03 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=65.4
Q ss_pred CCeEEEecccCcHHHHHHHHc------CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccc
Q psy3185 120 DVNILVPGAGLGRLAFEIARR------GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVT 193 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~------G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ 193 (298)
+..|++.|.=.|.=+...|.. ...|.|+|+...-... . . ..-+|
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~----a-----~e~hp------------------- 82 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--K----A-----IESHP------------------- 82 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-------G-----GGG---------------------
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--H----H-----Hhhcc-------------------
Confidence 469999999999888777653 2579999995431110 0 0 00011
Q ss_pred cCCCCCCCCCCCCCeeEEecccccccc------CCCcee-EEEecccccCcchHHHHHHHHHHhccCCeEEEEecccccc
Q psy3185 194 FPDINTSDYNDDCDFSMAAGDFLQVYV------HPNKWD-CVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYH 266 (298)
Q Consensus 194 ipd~~~~~~~~~~~~~~~~gDf~~~~~------~~~~fD-~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gPl~y~ 266 (298)
...+++|.+||-.+.-. .....+ ++|..-.=|+..++..-|+....+++||+++|...-...+
T Consensus 83 ----------~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~ 152 (206)
T PF04989_consen 83 ----------MSPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIED 152 (206)
T ss_dssp ------------TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred ----------ccCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccc
Confidence 12478889998654321 011122 2222222245578999999999999999999854322222
Q ss_pred ccCC-CCCCccC---CCHHHHHHHHHhCC-CEEE
Q psy3185 267 YSNM-LNEDSIE---PSYEVVKQVIQGLG-FVYE 295 (298)
Q Consensus 267 ~~~~-~~~~~~~---ls~eEl~~~~~~~G-F~i~ 295 (298)
.... ....... -..+.+.+.+.+.. |++.
T Consensus 153 ~~~~~~~~~~w~~g~~p~~av~~fL~~~~~f~iD 186 (206)
T PF04989_consen 153 WPESWFPDRPWGPGNNPKTAVKEFLAEHPDFEID 186 (206)
T ss_dssp HHHS-------------HHHHHHHHHTTTTEEEE
T ss_pred cccccccccchhhhhHHHHHHHHHHHHCCCcEec
Confidence 1111 0001111 24778888888755 7765
No 343
>KOG0023|consensus
Probab=86.62 E-value=1.3 Score=42.01 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=29.0
Q ss_pred CCCeEEEecc-cCcHHHHHHHHc-CCeEEEeeCCHH
Q psy3185 119 KDVNILVPGA-GLGRLAFEIARR-GYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGc-G~Grla~ela~~-G~~v~g~D~S~~ 152 (298)
++.+|-.+|. |+|.+|..+|+. |++|+++|-|..
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 5677877774 699999999987 999999999974
No 344
>PLN02712 arogenate dehydrogenase
Probab=86.49 E-value=4.5 Score=42.17 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCCCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHH
Q psy3185 118 PKDVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 118 ~~~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~ 152 (298)
....+|..+|+|. |.++..|.+.|++|++.|-+..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~ 86 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDH 86 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3456899999876 5577777778999999998854
No 345
>KOG2671|consensus
Probab=86.34 E-value=0.72 Score=44.05 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=36.0
Q ss_pred CCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.++.-|+||=.|||.+...-|.-|.-|.|.|+.+.|+.+
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vra 245 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRA 245 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeec
Confidence 567889999999999999999999999999999999874
No 346
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.30 E-value=6 Score=36.68 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=26.1
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~ 151 (298)
++.+||+.|+ +.|..+..+|+. |..|.+++-+.
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~ 212 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA 212 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch
Confidence 4679999997 678888888875 88988887554
No 347
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.25 E-value=9.8 Score=33.09 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=24.9
Q ss_pred CCeEEEecccCcHHHHH----HHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAGLGRLAFE----IARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~e----la~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++ |.++.. +++.|+.|.+.+-+..-+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~ 42 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKL 42 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 5689999985 444444 445699999999887644
No 348
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=86.25 E-value=3.4 Score=39.04 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=59.3
Q ss_pred CCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccC
Q psy3185 119 KDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 119 ~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
.+.+||+.| .|.|.++..||+. |+.+.++--|..=...++. ... .+
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~---lGA---d~------------------------- 190 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE---LGA---DH------------------------- 190 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh---cCC---CE-------------------------
Confidence 478999999 5788999999987 7787787777754443322 100 00
Q ss_pred CCCCCCCCCCCCeeEEecccccccc---CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYV---HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~---~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
-+.+...||.+-.. ....||+|+-+- - -+++....+.|++||.++.+|.
T Consensus 191 -----------vi~y~~~~~~~~v~~~t~g~gvDvv~D~v-----G--~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 191 -----------VINYREEDFVEQVRELTGGKGVDVVLDTV-----G--GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred -----------EEcCCcccHHHHHHHHcCCCCceEEEECC-----C--HHHHHHHHHHhccCCEEEEEec
Confidence 11122233332211 224699987543 2 2567778889999999997664
No 349
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.16 E-value=7 Score=35.07 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=25.7
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|+ |.|+ ++..|+++|+.|.+++-+..-+
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~ 46 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKV 46 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 568999996 4444 4555667899999999887644
No 350
>PLN02712 arogenate dehydrogenase
Probab=86.13 E-value=47 Score=34.73 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=25.8
Q ss_pred CCCeEEEecccC--cHHHHHHHHcCCeEEEeeCCHH
Q psy3185 119 KDVNILVPGAGL--GRLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~ 152 (298)
.+.+|..+|+|. |.++..|.+.|++|.+.|-+..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~ 403 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY 403 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence 467999999775 4455566667999999999854
No 351
>PRK12939 short chain dehydrogenase; Provisional
Probab=85.92 E-value=6.6 Score=34.33 Aligned_cols=35 Identities=23% Similarity=0.066 Sum_probs=24.5
Q ss_pred CCeEEEecccCcHHHHH----HHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFE----IARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~e----la~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|+ +|.++.. |+++|+.|.+++-+..-+.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~ 45 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEAR 45 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 568999996 3444444 5567999999987766543
No 352
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.81 E-value=2.9 Score=38.80 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=30.3
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+|. |..+..+|+. |.. |.+++-|..+....
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l 200 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVA 200 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 467899988766 8888888875 887 99999888766544
No 353
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.68 E-value=7.9 Score=35.51 Aligned_cols=33 Identities=18% Similarity=-0.091 Sum_probs=25.8
Q ss_pred eEEEecccCcH--HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGLGR--LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~Gr--la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|+++|+|.-. +|..|++.|++|+.++- ..-+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~ 36 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAK 36 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHH
Confidence 78999999744 67778899999999987 44333
No 354
>PRK08507 prephenate dehydrogenase; Validated
Probab=85.49 E-value=4.7 Score=36.88 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=26.8
Q ss_pred eEEEecccC--cHHHHHHHHcCC--eEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGY--VCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~--~v~g~D~S~~Ml~~ 156 (298)
+|..+|+|. |.++..|++.|+ .|++.|.++.-+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~ 40 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKK 40 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 688899886 557777777786 79999999875443
No 355
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=85.45 E-value=3.6 Score=38.23 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=28.9
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
.+.+||+.||| .|..+..+|+. |.+|.+++-+..-+..++
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~ 204 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLAR 204 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 46789999864 45566666665 889999998877655543
No 356
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=85.34 E-value=6.6 Score=37.04 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|.++..+|+. |.. |.+++-|......+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~ 228 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKA 228 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 45688888875 77788888865 887 99998888766544
No 357
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.33 E-value=1.4 Score=39.99 Aligned_cols=56 Identities=25% Similarity=0.143 Sum_probs=38.3
Q ss_pred HHHHHHHhhC-CCCCCCCCCCeEEEecccCcHHHHHHHHc--C--------CeEEEeeCCHHHHHHHHHHHh
Q psy3185 102 PIISEILARF-PPETINPKDVNILVPGAGLGRLAFEIARR--G--------YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 102 ~i~~~l~~~~-p~~~~~~~~~~VLdpGcG~Grla~ela~~--G--------~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+++.++..- | ..+.+|+++|+|.|+|+..+.+. . .++.-+|.|+.|...-+..+.
T Consensus 5 ~~~~~~~~~~~p-----~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 5 WIAQMWEQLGRP-----SEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp HHHHHHHHCT-------SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred HHHHHHHHcCCC-----CcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3555666542 3 23579999999999999998763 1 369999999999876665443
No 358
>KOG2793|consensus
Probab=85.29 E-value=6.2 Score=36.08 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=28.3
Q ss_pred CCCeEEEecccCcHHHHHHHHc-CCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G~~v~g~D~S~~Ml~ 155 (298)
+..+||++|+|+|-.+.-.|.. |..|.--|....+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~ 123 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN 123 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH
Confidence 3568999999999666666664 677888888777654
No 359
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.10 E-value=3.7 Score=38.44 Aligned_cols=40 Identities=23% Similarity=0.053 Sum_probs=29.3
Q ss_pred CCCeEEEecc-cCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA-GLGRLAFEIARR-GY-VCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc-G~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ ++|.++..+|+. |+ .|.+++-|......++
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~ 214 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAE 214 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4668888876 356677777765 88 7999998888766553
No 360
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.04 E-value=3.9 Score=38.25 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=29.3
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.||| +|.++..+|+. |.. |.+++-+..-+..++
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 46789999875 46666777765 886 789999888666543
No 361
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=84.75 E-value=2 Score=36.84 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=26.5
Q ss_pred CCCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSLFMLF 155 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~~Ml~ 155 (298)
-.+.+|..+|+ |+++..+|++ |.+|.+.|.+..--.
T Consensus 34 l~g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 34 LRGKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp STTSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred cCCCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCChhh
Confidence 35789999976 5666666654 889999999987543
No 362
>PRK06182 short chain dehydrogenase; Validated
Probab=84.53 E-value=8.3 Score=34.61 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~M 153 (298)
+.+||+.||+ .|+ ++..|+++|++|.+++-+..-
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~ 39 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDK 39 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4589999963 333 334455679999999887653
No 363
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=84.45 E-value=7.8 Score=35.61 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=25.4
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+|-++|+|. ..++..|++.|++|++.|.++.-+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~ 37 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADE 37 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHH
Confidence 366787766 23666677789999999999865443
No 364
>PLN02253 xanthoxin dehydrogenase
Probab=84.31 E-value=17 Score=32.65 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=24.6
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++ .|+ ++..|+++|+.|..++.+....
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~ 55 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLG 55 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5679999953 333 4455666799999998876543
No 365
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=84.29 E-value=6.8 Score=35.04 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|+ ++|..+..+|+. |..|..++-+. ...
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~ 182 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NAD 182 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHH
Confidence 4679999996 577777777765 88988887666 443
No 366
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.23 E-value=3.1 Score=38.68 Aligned_cols=40 Identities=33% Similarity=0.277 Sum_probs=29.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+| .|.++..+|+. |.. |++++-+..-+..++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 46799998875 45566667764 888 999999887665554
No 367
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=84.18 E-value=4.7 Score=37.41 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=27.5
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|-.+|+|. +.++..|++.|++|++.|.+..-+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~ 38 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVD 38 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHH
Confidence 688888886 5577778888999999999987543
No 368
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.04 E-value=4.3 Score=37.55 Aligned_cols=37 Identities=24% Similarity=0.127 Sum_probs=27.1
Q ss_pred CCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~ 156 (298)
+.+||+.||| .|.++..+|+. |.. |.++|.+...+..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~ 184 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDG 184 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHh
Confidence 5689999975 57777888875 886 6677887765543
No 369
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=84.02 E-value=5.3 Score=38.43 Aligned_cols=43 Identities=26% Similarity=0.149 Sum_probs=33.6
Q ss_pred CCCeEEEecccCcHHHHHHHHc----------CCeEEEeeCCHHHHHHHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----------GYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----------G~~v~g~D~S~~Ml~~a~~~l 161 (298)
.+..++++|+|.|.|+..+.+. ...+.-+|.|+.....=+..|
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L 129 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL 129 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence 3578999999999999998764 246889999999766544443
No 370
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=84.02 E-value=6.2 Score=38.28 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCeEEEecccCcHHHHHHHHc--C-CeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR--G-YVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPD 196 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~--G-~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd 196 (298)
+.+|||+=||+|-=+...|.. | ..|++||+|+..+...+.-+. .| +
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~----~N---------------------------~ 98 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLE----LN---------------------------G 98 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHH----HC---------------------------T
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHh----hc---------------------------c
Confidence 579999999999888888776 3 469999999998776554111 00 1
Q ss_pred CCCCCCCCCCCeeEEecccccccc-CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 197 INTSDYNDDCDFSMAAGDFLQVYV-HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 197 ~~~~~~~~~~~~~~~~gDf~~~~~-~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
+. . ..+.+...|...+.. ....||+|= ||.--....||+...+.+|.||++.
T Consensus 99 ~~-----~-~~~~v~~~DAn~ll~~~~~~fD~ID----lDPfGSp~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 99 LE-----D-ERIEVSNMDANVLLYSRQERFDVID----LDPFGSPAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp -S-----G-CCEEEEES-HHHHHCHSTT-EEEEE----E--SS--HHHHHHHHHHEEEEEEEE
T ss_pred cc-----C-ceEEEehhhHHHHhhhccccCCEEE----eCCCCCccHhHHHHHHHhhcCCEEE
Confidence 11 0 146677788776642 468899874 3555567789999999999999886
No 371
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.58 E-value=9.2 Score=34.55 Aligned_cols=39 Identities=28% Similarity=0.240 Sum_probs=30.7
Q ss_pred CCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 120 DVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 120 ~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
+.+||..|+ |+|..+..+|+. |..|.+++-+..-+..++
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 174 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLR 174 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 679999988 688888888875 899999988876555443
No 372
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=83.55 E-value=7.7 Score=36.37 Aligned_cols=32 Identities=28% Similarity=0.171 Sum_probs=26.2
Q ss_pred CeEEEecccC-c-HHHHHHHHcCCeEEEeeCCHH
Q psy3185 121 VNILVPGAGL-G-RLAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 121 ~~VLdpGcG~-G-rla~ela~~G~~v~g~D~S~~ 152 (298)
.+|.++|+|. | .+|..|++.|++|+.+|-+..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~ 36 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI 36 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH
Confidence 4799999994 3 577888899999999998653
No 373
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=83.47 E-value=4.7 Score=37.89 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=29.9
Q ss_pred CCeEEEecccCcHHHHHHHH--cCCeEEEeeCCHHHHHHHHHHHhh
Q psy3185 120 DVNILVPGAGLGRLAFEIAR--RGYVCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~--~G~~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
..++||+|+|..-+=--|+. .|+.++|.|+++.-+..|+....+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~ 148 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVER 148 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHh
Confidence 67999999999865333333 399999999999999999986654
No 374
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=83.36 E-value=6.3 Score=34.77 Aligned_cols=32 Identities=22% Similarity=0.105 Sum_probs=23.9
Q ss_pred CCCeEEEecccCc--HHHHHHHHcCCeEEEeeCC
Q psy3185 119 KDVNILVPGAGLG--RLAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 119 ~~~~VLdpGcG~G--rla~ela~~G~~v~g~D~S 150 (298)
.+.+||++|.|.= |-+..|.+.|..|+-++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4569999999853 4456677889998887654
No 375
>PRK07806 short chain dehydrogenase; Provisional
Probab=83.19 E-value=13 Score=32.65 Aligned_cols=31 Identities=29% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCC
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S 150 (298)
+.+||+.|+ |.|+ ++..|+++|++|.++.-+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999997 5555 555566789999887654
No 376
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=83.14 E-value=7.8 Score=36.01 Aligned_cols=40 Identities=25% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCCeEEEecc-cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA-GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc-G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|| ++|..+..+|+. |..|.+++-+......++
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 210 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL 210 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4678888877 456666666664 889999999988766543
No 377
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=83.11 E-value=6.7 Score=35.85 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ ++|..+..+|+. |..+..+.-|......+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 181 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC 181 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4678999884 689999998865 88877788888766554
No 378
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.03 E-value=6.8 Score=36.37 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=30.0
Q ss_pred CCeEEEecccC--cHHHHHHHHcCCe--EEEeeCCHHHHHHHHH
Q psy3185 120 DVNILVPGAGL--GRLAFEIARRGYV--CQGNEFSLFMLFASNF 159 (298)
Q Consensus 120 ~~~VLdpGcG~--Grla~ela~~G~~--v~g~D~S~~Ml~~a~~ 159 (298)
..+|+.+|.|. |.++..|...|+. ++|.|-|..-+..+..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~ 46 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE 46 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh
Confidence 35899999886 5577777788986 5888888876666543
No 379
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=82.96 E-value=11 Score=30.67 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEE
Q psy3185 221 HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWIN 259 (298)
Q Consensus 221 ~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In 259 (298)
..+.||+|+-|- .+....+.++.+.+.+.|+..++.
T Consensus 64 ~~~~~D~viv~v---Ka~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 64 DAGPYDLVIVAV---KAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp HHSTESEEEE-S---SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred ccCCCcEEEEEe---cccchHHHHHHHhhccCCCcEEEE
Confidence 357899776552 344567889999999999987774
No 380
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=82.89 E-value=2.2 Score=38.17 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
++..|.+.+|.. +..+++||=||+|.+++.+...+..|+.||+...-....+.++.
T Consensus 8 l~~~I~~~ip~~----~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKN----KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC----CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence 678888888841 46799999999999999998899999999999998887774443
No 381
>PLN02256 arogenate dehydrogenase
Probab=82.75 E-value=7.3 Score=36.53 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=25.8
Q ss_pred CCCeEEEecccC--cHHHHHHHHcCCeEEEeeCCH
Q psy3185 119 KDVNILVPGAGL--GRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~ 151 (298)
...+|..+|+|. |.++..+.+.|++|+++|.+.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 457899999874 346666667799999999986
No 382
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.66 E-value=28 Score=30.73 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCeEEEecccCc--H-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAGLG--R-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG~G--r-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++.| + ++..|+++|++|..++-+..-+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~ 46 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDAL 46 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 568999997543 3 5566777899999998886544
No 383
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.57 E-value=14 Score=32.99 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCeEEEecc----cCcH-HHHHHHHcCCeEEEeeCC
Q psy3185 120 DVNILVPGA----GLGR-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGc----G~Gr-la~ela~~G~~v~g~D~S 150 (298)
+..+|+.|+ |.|+ ++..|++.|++|...+-+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 568999997 5565 466677789998877544
No 384
>PRK09242 tropinone reductase; Provisional
Probab=82.53 E-value=27 Score=30.80 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=26.8
Q ss_pred CCCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.++|+.|++ .|+ ++..|+++|++|..++-+..-+.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~ 47 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALA 47 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 35689999984 344 55556777999999988876543
No 385
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.51 E-value=13 Score=28.83 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=22.9
Q ss_pred ccCcHHHHHHHHc----CCeEEEeeCCHHHHHHHH
Q psy3185 128 AGLGRLAFEIARR----GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 128 cG~Grla~ela~~----G~~v~g~D~S~~Ml~~a~ 158 (298)
||.|+++..+++. +..|+.+|.++.-...++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~ 38 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELR 38 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH
Confidence 5667888888764 568999999998655443
No 386
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.40 E-value=8.3 Score=34.85 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=30.6
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~ 156 (298)
++.+||+.|+ ++|..+..+|+. |+.|.++.-+..-...
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 182 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAAL 182 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4679999986 689999999876 9999999888865443
No 387
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=82.25 E-value=17 Score=36.33 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=29.1
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
+|-++|.|. +.+|..|+++|++|++.|.++......
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l 40 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEF 40 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 678888885 347778888999999999999876543
No 388
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=82.19 E-value=9.6 Score=34.90 Aligned_cols=41 Identities=20% Similarity=0.027 Sum_probs=29.6
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+| +|..+..+|+. |..|.+++-+......++.
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR 197 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 46789998763 45555556654 9999999999887766554
No 389
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=81.75 E-value=10 Score=35.34 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=27.5
Q ss_pred CCCeEEEecccC--cHHHHHHHHcCCeEEEeeCCH
Q psy3185 119 KDVNILVPGAGL--GRLAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~ 151 (298)
...+|+++|+|. |.+|..|++.|++|+.+.-+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 457899999995 558888999999999887765
No 390
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=81.35 E-value=8.2 Score=36.47 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|+| +|.++..+|+. |..|++++-+.....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~ 218 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRE 218 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 46688888764 56677777765 888888888876543
No 391
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=81.33 E-value=13 Score=34.91 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=27.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|..+..+|+. |. .|.+++-+..-...+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 218 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA 218 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 46688888764 45566667765 88 899999888755443
No 392
>PRK08267 short chain dehydrogenase; Provisional
Probab=81.32 E-value=24 Score=31.20 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=24.4
Q ss_pred eEEEecccC--cH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGL--GR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+||+.|++. |+ ++..|+++|+.|.+++-+..-+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~ 39 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLA 39 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 689999753 33 45556677999999988876443
No 393
>PRK07677 short chain dehydrogenase; Provisional
Probab=81.09 E-value=31 Score=30.39 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=25.8
Q ss_pred CeEEEecccC--cH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 121 VNILVPGAGL--GR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 121 ~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
.++|+.|++. |+ ++..|+++|+.|.+.+-+...+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~ 39 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLE 39 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4789999844 44 56667778999999998876443
No 394
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.87 E-value=17 Score=32.33 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=24.2
Q ss_pred CCeEEEeccc----CcH-HHHHHHHcCCeEEEeeCCH
Q psy3185 120 DVNILVPGAG----LGR-LAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 120 ~~~VLdpGcG----~Gr-la~ela~~G~~v~g~D~S~ 151 (298)
+..+|+-|++ .|+ ++..|++.|+.|...+-+.
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 5689999974 555 6666778899999887664
No 395
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.73 E-value=12 Score=34.11 Aligned_cols=34 Identities=21% Similarity=0.016 Sum_probs=26.5
Q ss_pred eEEEecccCc--HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGLG--RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~G--rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+|+++|||.- .+|..|++.|++|+.++-+..-+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~ 37 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLD 37 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHH
Confidence 6999999853 367778888999999998765443
No 396
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=80.49 E-value=3.9 Score=35.93 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCeEEEecccC-cH-HHHHHHHcCC-eEEEeeCC
Q psy3185 120 DVNILVPGAGL-GR-LAFEIARRGY-VCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGcG~-Gr-la~ela~~G~-~v~g~D~S 150 (298)
..+|+++|||. |. .+..||+.|. +++-+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 57999999984 43 7777888998 59999998
No 397
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.25 E-value=12 Score=31.29 Aligned_cols=100 Identities=20% Similarity=0.117 Sum_probs=57.4
Q ss_pred eEEEecccCcHH--HHHHHHcCCeEEEeeCCHHHHHHHHHHHhhhhhccccccccccccccccccccccccccccCCCCC
Q psy3185 122 NILVPGAGLGRL--AFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINT 199 (298)
Q Consensus 122 ~VLdpGcG~Grl--a~ela~~G~~v~g~D~S~~Ml~~a~~~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ipd~~~ 199 (298)
+|.++|+|.+.. |..|+.+|++|+-...+...+..-+. . .. ....+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~---~-~~-----------------------n~~~~~~~~- 52 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINE---T-RQ-----------------------NPKYLPGIK- 52 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHH---H-TS-----------------------ETTTSTTSB-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH---h-CC-----------------------CCCCCCCcc-
Confidence 688999999885 45588899999999999865544332 1 00 011122221
Q ss_pred CCCCCCCCeeEEeccccccccCCCceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEe
Q psy3185 200 SDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINL 260 (298)
Q Consensus 200 ~~~~~~~~~~~~~gDf~~~~~~~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~ 260 (298)
++ .++.+ .-|..+.. ..-|+|+.+- ...-+.++++.|...|+++=.+|++
T Consensus 53 --l~--~~i~~-t~dl~~a~---~~ad~Iiiav---Ps~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 53 --LP--ENIKA-TTDLEEAL---EDADIIIIAV---PSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp --EE--TTEEE-ESSHHHHH---TT-SEEEE-S----GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred --cC--ccccc-ccCHHHHh---CcccEEEecc---cHHHHHHHHHHHhhccCCCCEEEEe
Confidence 11 13332 34443332 3446554331 2334568899999999888777764
No 398
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=80.24 E-value=17 Score=30.36 Aligned_cols=21 Identities=5% Similarity=-0.145 Sum_probs=17.3
Q ss_pred eEEEeeCCHHHHHHHHHHHhh
Q psy3185 143 VCQGNEFSLFMLFASNFILNK 163 (298)
Q Consensus 143 ~v~g~D~S~~Ml~~a~~~l~~ 163 (298)
+|.|.|+=...+...+..|..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~ 21 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEE 21 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHh
Confidence 589999999999999987764
No 399
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=80.21 E-value=38 Score=30.28 Aligned_cols=37 Identities=24% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCCeEEEecccC--cH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGL--GR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|++. |+ ++..|++.|+.|..++-+...+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE 48 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 356899999753 33 55567778999999998876443
No 400
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.90 E-value=5.8 Score=33.97 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHHHHhhCCCCCCCCCCCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 103 IISEILARFPPETINPKDVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 103 i~~~l~~~~p~~~~~~~~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
+++.+++.+. +-.+.+||++|+| .|. ++..|.++|..|+.++-+..
T Consensus 31 ~v~l~~~~~~----~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 31 ILELLKRYGI----DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred HHHHHHHcCC----CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 3444444443 2457899999999 388 77788889999988887754
No 401
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=79.63 E-value=12 Score=34.53 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=32.1
Q ss_pred CCCCeEEEeccc-CcHHHHHHHHc--CCeEEEeeCCHHHHHHHH
Q psy3185 118 PKDVNILVPGAG-LGRLAFEIARR--GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 118 ~~~~~VLdpGcG-~Grla~ela~~--G~~v~g~D~S~~Ml~~a~ 158 (298)
+++.+||+.||| .|.++..+|+. |..|++++-|..-...++
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~ 204 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK 204 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Confidence 356799999875 57788888883 999999999988766554
No 402
>PRK06181 short chain dehydrogenase; Provisional
Probab=79.45 E-value=12 Score=33.18 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=22.5
Q ss_pred CeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHH
Q psy3185 121 VNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 121 ~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~M 153 (298)
.+||+.|+ |+|+ ++..|+++|+.|.+++-+..-
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~ 37 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETR 37 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 37899995 3333 333455679999999988653
No 403
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=79.39 E-value=20 Score=33.34 Aligned_cols=36 Identities=25% Similarity=0.120 Sum_probs=29.9
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
.+|+++|||. |.+|..|++.|.+|+.++-+..-+.+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~ 40 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAA 40 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHH
Confidence 5899999995 66899999999999999998654443
No 404
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=79.36 E-value=9.4 Score=35.30 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
++.+||+-|+| .|..+..+|+. |.. |.++.-|......+
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~ 206 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFA 206 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 46789988876 77888888875 888 88888888766544
No 405
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=79.27 E-value=8.7 Score=36.20 Aligned_cols=39 Identities=23% Similarity=0.096 Sum_probs=29.5
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|..+..+|+. |.. |.+++-+......+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~ 223 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELA 223 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH
Confidence 46788888875 67777788765 886 99998888765544
No 406
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=79.26 E-value=7.6 Score=36.72 Aligned_cols=41 Identities=24% Similarity=0.118 Sum_probs=30.7
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
++.+||+.|+|. |.++..+|+. |. .|.+++-+...+..++.
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~ 229 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE 229 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 467888888754 7777778865 88 49999999887665543
No 407
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=79.09 E-value=9.1 Score=36.66 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=26.4
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~M 153 (298)
++.+||+.||| .|.++..+|+. |..|.+++-+..-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEK 214 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 46789998875 56677777765 8899999887543
No 408
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=79.07 E-value=13 Score=33.60 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=26.0
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCC
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFS 150 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S 150 (298)
++.+||+.|| ++|..+..+|+. |.+|.+++-+
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~ 177 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST 177 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH
Confidence 4679999997 578888888875 8999988744
No 409
>PRK06194 hypothetical protein; Provisional
Probab=79.00 E-value=44 Score=30.01 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=26.5
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|+ |.|+ ++..|+++|+.|+.+|-+..-+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~ 44 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALD 44 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 458999996 4443 55567778999999998876543
No 410
>PRK06180 short chain dehydrogenase; Provisional
Probab=78.79 E-value=33 Score=30.85 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
..+||+.||+ .|+ ++..|+++|++|.+++-+...+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~ 41 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAAR 41 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHH
Confidence 4579999984 444 5556677899999999887644
No 411
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=78.55 E-value=36 Score=30.02 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=24.6
Q ss_pred CCeEEEecccC--cH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 120 DVNILVPGAGL--GR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
+.+||+-|++. |+ ++..|+++|+.|..++-+..
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~ 43 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL 43 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH
Confidence 46899999743 44 56667778999999988753
No 412
>PRK09072 short chain dehydrogenase; Provisional
Probab=78.53 E-value=47 Score=29.39 Aligned_cols=35 Identities=29% Similarity=0.183 Sum_probs=25.6
Q ss_pred CCeEEEecccC--cH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAGL--GR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++. |+ ++..|+++|+.|.+++-+..-+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~ 42 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKL 42 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 46899999653 33 5555677899999999887644
No 413
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.49 E-value=13 Score=38.14 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=24.3
Q ss_pred CCCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 119 KDVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 119 ~~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
.+..||+.|+ |+|+ ++..|++.|++|.++.-+..-+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 3557888887 3443 3344566799999998876543
No 414
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=78.43 E-value=9.5 Score=35.41 Aligned_cols=39 Identities=23% Similarity=0.132 Sum_probs=29.3
Q ss_pred CCCeEEEecc-cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA-GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc-G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|| ++|.++..+|+. |..|.++.-|......+
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~ 205 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELA 205 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 4678999987 456677777764 89999999888765544
No 415
>KOG0024|consensus
Probab=78.25 E-value=6.5 Score=37.41 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=32.9
Q ss_pred CCCCeEEEecccCcHHHHHH-HHc-CC-eEEEeeCCHHHHHHHHH
Q psy3185 118 PKDVNILVPGAGLGRLAFEI-ARR-GY-VCQGNEFSLFMLFASNF 159 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~el-a~~-G~-~v~g~D~S~~Ml~~a~~ 159 (298)
..+.+||+.|||.=.|.--+ |+. |. +|..+|.++.-|+.|++
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 45789999999975555444 443 65 59999999999999887
No 416
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.19 E-value=46 Score=29.26 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=25.8
Q ss_pred CCCeEEEecccCcHHHHH----HHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGAGLGRLAFE----IARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~e----la~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|+ +|.++.. |+++|+.|.+.+-+...+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLA 48 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 3568999995 4554444 5557999999998876543
No 417
>PRK06139 short chain dehydrogenase; Provisional
Probab=78.12 E-value=39 Score=31.79 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=27.3
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+..||+.|+ |.|+ ++..|+++|++|..++-+..-+.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~ 45 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQ 45 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 568999997 4555 55567788999999988876554
No 418
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=78.12 E-value=7.5 Score=36.58 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCCeEEEeccc-CcH-HHHHHHHcCCeEEEeeCCH
Q psy3185 119 KDVNILVPGAG-LGR-LAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG-~Gr-la~ela~~G~~v~g~D~S~ 151 (298)
.+.+|..+|.| .|+ ++..+...|+.|.+.|.+.
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~ 169 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSR 169 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46789999988 465 4555666699999998754
No 419
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.02 E-value=13 Score=34.57 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCCeEEEecccC-cHHHH-HHHHcCCeEEEeeCCHHH
Q psy3185 119 KDVNILVPGAGL-GRLAF-EIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~-ela~~G~~v~g~D~S~~M 153 (298)
.+.+|+++|+|. |+.+. .+...|..|+..|-+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 467999999864 22222 233459999999999763
No 420
>PRK08862 short chain dehydrogenase; Provisional
Probab=77.66 E-value=49 Score=29.07 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCeEEEecccCcH---HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 120 DVNILVPGAGLGR---LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGcG~Gr---la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+..+|+.|++.|- ++..|+++|+.|..++-+...+..
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~ 44 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKD 44 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 5689999988765 777788889999999888776543
No 421
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.66 E-value=43 Score=29.54 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCeEEEeccc----CcH-HHHHHHHcCCeEEEeeCC
Q psy3185 120 DVNILVPGAG----LGR-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGcG----~Gr-la~ela~~G~~v~g~D~S 150 (298)
+.+||+.|++ .|. ++..|+++|+.|..++-+
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 4579999984 554 555667789999998766
No 422
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.63 E-value=13 Score=34.46 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=25.9
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~ 156 (298)
++.+||+-|+|. |.++..+|+. |. .|.+++-|..=...
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~ 203 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLEL 203 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 466888877654 7777777765 87 68888766654433
No 423
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.58 E-value=41 Score=31.54 Aligned_cols=36 Identities=31% Similarity=0.228 Sum_probs=25.7
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+..||+.|+ |.|+ ++..|+++|++|..++-+..-+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~ 46 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLE 46 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 468999996 4444 44556778999999988876443
No 424
>PRK05855 short chain dehydrogenase; Validated
Probab=77.37 E-value=32 Score=34.15 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=27.9
Q ss_pred CCCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
.+.++|+.|+ |.|+ ++..|+++|++|..++-+..-+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~ 353 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAE 353 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3568999997 5555 66667788999999998875443
No 425
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=77.25 E-value=20 Score=33.38 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=28.6
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CC-eEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GY-VCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~-~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|.++..+|+. |. .|++++-|..-...+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 216 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAA 216 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 45688888776 56677777765 88 689999888766554
No 426
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=77.20 E-value=10 Score=34.86 Aligned_cols=40 Identities=28% Similarity=0.259 Sum_probs=32.1
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+ ++|.++..+|+. |..|..++-+......++
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~ 204 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVS 204 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4678999888 588888888876 889999998888766543
No 427
>PRK10083 putative oxidoreductase; Provisional
Probab=77.18 E-value=11 Score=34.73 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=28.6
Q ss_pred CCCeEEEeccc-CcHHHHHHHH-c-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIAR-R-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~-~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+| +|..+..+|+ . |.. +.+++-+..-+..++
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~ 203 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK 203 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 46789999865 3556666776 3 985 888998887666554
No 428
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=76.83 E-value=17 Score=32.55 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++..||+.|| ++|..+..+|+. |..|.+++.+......+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 180 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALA 180 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence 4679999998 577787777765 89999999998766544
No 429
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=76.79 E-value=13 Score=33.11 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ ++|..+..+|+. |..|.+++-+......+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 4678999994 588888888875 99999998888766544
No 430
>PRK06701 short chain dehydrogenase; Provisional
Probab=76.74 E-value=31 Score=31.54 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCeEEEecccC--cH-HHHHHHHcCCeEEEeeCCH
Q psy3185 120 DVNILVPGAGL--GR-LAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 120 ~~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S~ 151 (298)
+.+||+.|++. |+ ++..|+++|+.|..+..+.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999643 22 5555667899998887764
No 431
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=76.72 E-value=12 Score=36.25 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCeEEEecccCcHHHHHHHHc-CC-eEEEeeCCHHHHHHHHH--HHhhhhhccccccccccccccccccccccccccccC
Q psy3185 120 DVNILVPGAGLGRLAFEIARR-GY-VCQGNEFSLFMLFASNF--ILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFP 195 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela~~-G~-~v~g~D~S~~Ml~~a~~--~l~~~~~~~~~~i~p~~~~~s~~~~~~~~~r~~~ip 195 (298)
..+|||+=||+|-=+..+|.. |. .|+.||+|+......+. .+|.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-------------------------------- 100 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-------------------------------- 100 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC--------------------------------
Confidence 469999999999888888876 55 69999999998766544 1110
Q ss_pred CCCCCCCCCCCCeeEEeccccccccC-CCceeEEEecccccCcchHHHHHHHHHHhccCCeEEE
Q psy3185 196 DINTSDYNDDCDFSMAAGDFLQVYVH-PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 196 d~~~~~~~~~~~~~~~~gDf~~~~~~-~~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~I 258 (298)
..+......|...+... ...||+|= ||..-.+..|++...+..|.||++.
T Consensus 101 ---------~~~~~v~n~DAN~lm~~~~~~fd~ID----iDPFGSPaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 101 ---------GEDAEVINKDANALLHELHRAFDVID----IDPFGSPAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred ---------cccceeecchHHHHHHhcCCCccEEe----cCCCCCCchHHHHHHHHhhcCCEEE
Confidence 01222333555444332 36777763 4555667789999999999999885
No 432
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=76.71 E-value=12 Score=34.65 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCCeEEEecccC-cHHHHHHHHc-CC-eEEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAGL-GRLAFEIARR-GY-VCQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG~-Grla~ela~~-G~-~v~g~D~S~~Ml~~a~ 158 (298)
++.+||+-|+|. |..+..+|+. |. .|.+++-|..-...++
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~ 205 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELAR 205 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 467888877764 7777778864 87 5888888877665443
No 433
>PRK06500 short chain dehydrogenase; Provisional
Probab=76.71 E-value=48 Score=28.79 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=25.2
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~M 153 (298)
+.+||+.|+ |.|+ ++..|+++|+.|.+++-+..-
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~ 42 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAITGRDPAS 42 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHH
Confidence 458999997 4444 556677789999999887653
No 434
>PRK08655 prephenate dehydrogenase; Provisional
Probab=76.59 E-value=16 Score=35.95 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=24.7
Q ss_pred eEEEec-cc-CcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 122 NILVPG-AG-LGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 122 ~VLdpG-cG-~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+|..+| +| .|+ ++..|...|++|++.|-+....
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKG 37 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHH
Confidence 688997 56 443 6666667799999999987654
No 435
>PRK05717 oxidoreductase; Validated
Probab=76.41 E-value=45 Score=29.37 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=25.1
Q ss_pred CCCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHH
Q psy3185 119 KDVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~ 152 (298)
++.+||+.|+ |.|+ ++..|+++|++|..++.+..
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~ 45 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRE 45 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 4568999996 4444 55567778999999988764
No 436
>PRK06138 short chain dehydrogenase; Provisional
Probab=76.40 E-value=51 Score=28.68 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=26.1
Q ss_pred CCCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|| |.|+ ++..|+++|++|.++.-+...+.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~ 43 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAE 43 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHH
Confidence 3568999998 4444 44456667999999988765443
No 437
>PRK06914 short chain dehydrogenase; Provisional
Probab=76.25 E-value=40 Score=30.14 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+..||+.|+ |+|+ ++..|+++|++|.+++-+..-+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~ 40 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQ 40 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 347899996 4444 4455677899999998776543
No 438
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=76.06 E-value=29 Score=34.66 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=24.3
Q ss_pred EEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 123 ILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 123 VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
|-.+|.|. +.+|..|++.|++|++.|-++.....
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~ 37 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDE 37 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 44566654 33556667779999999999986654
No 439
>PRK07326 short chain dehydrogenase; Provisional
Probab=75.84 E-value=52 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=23.9
Q ss_pred CCeEEEecccCcHHHHHHH----HcCCeEEEeeCCHH
Q psy3185 120 DVNILVPGAGLGRLAFEIA----RRGYVCQGNEFSLF 152 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela----~~G~~v~g~D~S~~ 152 (298)
+.+||+.|+ +|.++..++ ++|++|.+++-++.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~ 41 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQK 41 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHH
Confidence 468999994 666665554 56999999988764
No 440
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=75.80 E-value=15 Score=33.40 Aligned_cols=38 Identities=32% Similarity=0.294 Sum_probs=28.4
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFA 156 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~ 156 (298)
++.+||+.|+ |.|..+..+++. |+.|..++-+..-...
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~ 206 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLER 206 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 4568888886 578887777764 8999999888765443
No 441
>PRK07574 formate dehydrogenase; Provisional
Probab=75.73 E-value=7.3 Score=37.88 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=23.8
Q ss_pred CCCeEEEecccC-cH-HHHHHHHcCCeEEEeeCCH
Q psy3185 119 KDVNILVPGAGL-GR-LAFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S~ 151 (298)
.+.+|..+|.|. |+ ++..+...|.+|.+.|.+.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 467899999874 65 3444455589999999875
No 442
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=75.71 E-value=36 Score=32.76 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=62.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcchHHHHHHHHHHHhhhccCChHHHhhhhHHHHHHHHhh
Q psy3185 31 LKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILAR 110 (298)
Q Consensus 31 ~~~~i~~N~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~ 110 (298)
++.+.+.....++..++...+.+..-+.. .-..+..+ ++.|+-.+..+ |.+.+++.
T Consensus 184 l~kltd~~i~Yl~~qi~aGAdavqifDsW------~g~l~~~~-----------~~~f~~~~~~~-------i~~~vk~~ 239 (352)
T COG0407 184 LDKLTDAVIEYLKAQIEAGADAVQIFDSW------AGVLSMID-----------YDEFVLPYMKR-------IVREVKEV 239 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeeccc------cccCCccc-----------HHHHhhhHHHH-------HHHHHHHh
Confidence 35566777777777777655544443321 00111122 33444444333 67777764
Q ss_pred CCCCCCCCCCCeEEEecccCcHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 111 FPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 111 ~p~~~~~~~~~~VLdpGcG~Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+ +..|+-.+.|+|.+...+++.|+++.|+|++-.| ..++.
T Consensus 240 ~~-------~~pii~f~~ga~~~l~~m~~~g~d~l~vdw~v~l-~~a~~ 280 (352)
T COG0407 240 KG-------GVPVIHFCKGAGHLLEDMAKTGFDVLGVDWRVDL-KEAKK 280 (352)
T ss_pred CC-------CCcEEEECCCcHHHHHHHHhcCCcEEeeccccCH-HHHHH
Confidence 33 3689999999999999999999999999999994 44444
No 443
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=75.58 E-value=17 Score=33.14 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=29.5
Q ss_pred CCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 120 DVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 120 ~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
+.+||+.|+ ++|.++..+|+. |..|.+++-+..-...+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 187 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL 187 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 568999986 677788888875 99999998888755444
No 444
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.52 E-value=32 Score=30.11 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=25.0
Q ss_pred CCeEEEecccCcHHHHHH----HHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEI----ARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~el----a~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|+ +|.++..+ +++|++|.+++-+..-+.
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~ 42 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAA 42 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 458999986 35555554 456999999998877554
No 445
>PRK07825 short chain dehydrogenase; Provisional
Probab=75.48 E-value=52 Score=29.31 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=25.3
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++ .|+ ++..|+++|+.|...+-+..-+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~ 42 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALA 42 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 4689999984 333 4455677799999988877644
No 446
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=75.07 E-value=26 Score=32.05 Aligned_cols=39 Identities=23% Similarity=0.051 Sum_probs=25.7
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.||| .|..+..+|+. |.+|.+++-+..-...+
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~ 207 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELA 207 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHH
Confidence 46788888765 23344445544 88999998888655443
No 447
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=74.89 E-value=49 Score=29.29 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=26.1
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|++ .|+ ++..|++.|+.|..++-+...+.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 44 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLA 44 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4689999973 343 45556677999999998876543
No 448
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=74.79 E-value=14 Score=33.53 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=21.2
Q ss_pred HHHHHHHcC--CeEEEeeCCHHHHHHHHH
Q psy3185 133 LAFEIARRG--YVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 133 la~ela~~G--~~v~g~D~S~~Ml~~a~~ 159 (298)
+|..|.+.| +.|+|.|.++..+..+..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence 467788888 689999999998877754
No 449
>PRK07890 short chain dehydrogenase; Provisional
Probab=74.64 E-value=59 Score=28.48 Aligned_cols=36 Identities=33% Similarity=0.302 Sum_probs=26.4
Q ss_pred CCeEEEeccc--CcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAG--LGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG--~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|++ .|+ ++..|+++|+.|..++-+..-+.
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~ 43 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLD 43 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4689999963 333 45557778999999998876443
No 450
>PRK06125 short chain dehydrogenase; Provisional
Probab=74.63 E-value=60 Score=28.62 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+.+||+.|+ |.|+ ++..|+++|+.|.+++-+...+..
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 46 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEA 46 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 568999997 3444 445566779999999998876543
No 451
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=74.49 E-value=7.5 Score=33.40 Aligned_cols=41 Identities=27% Similarity=0.175 Sum_probs=31.3
Q ss_pred eEEEecccCc--HHHHHHHHcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 122 NILVPGAGLG--RLAFEIARRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 122 ~VLdpGcG~G--rla~ela~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
+|-++|+|+= .+|..+|..|++|+-.|.|+..+..+...+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~ 43 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE 43 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH
Confidence 5789999863 4677788889999999999999987766443
No 452
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=74.20 E-value=49 Score=33.33 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=28.2
Q ss_pred CCeEEEeccc-Cc-HHHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAG-LG-RLAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG-~G-rla~ela~~G~~v~g~D~S~~Ml~ 155 (298)
-.+|=.+|.| .| .+|..|++.||.|++-|-++.-..
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~ 43 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVD 43 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHH
Confidence 3468888888 34 477888889999999999987554
No 453
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.13 E-value=58 Score=28.24 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFM 153 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~M 153 (298)
+.+||+.|+ |+|+ ++..|+++|++|.+++-+..-
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 468999997 4555 556677789999999998753
No 454
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=74.11 E-value=26 Score=31.63 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=25.8
Q ss_pred CCCeEEEecc-cCcHHHHHHHHc-CCe-EEEeeCCHHHHH
Q psy3185 119 KDVNILVPGA-GLGRLAFEIARR-GYV-CQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGc-G~Grla~ela~~-G~~-v~g~D~S~~Ml~ 155 (298)
++.+||+.|+ |+|..+..+|+. |++ |.++.-+..-..
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~ 168 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLA 168 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 4667888764 456666667765 888 988887776554
No 455
>PRK12742 oxidoreductase; Provisional
Probab=74.06 E-value=57 Score=28.12 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeC
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEF 149 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~ 149 (298)
+.+||+.|+ |.|+ ++..|+++|++|....-
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 468999997 5555 55556777999877644
No 456
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=73.97 E-value=14 Score=33.88 Aligned_cols=39 Identities=21% Similarity=0.051 Sum_probs=29.9
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ ++|..+..+|+. |..|.+++-+..-...+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~ 186 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWL 186 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4678999884 688888888876 88999998887654433
No 457
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.89 E-value=3.9 Score=40.79 Aligned_cols=30 Identities=37% Similarity=0.391 Sum_probs=26.1
Q ss_pred CCeEEEecccCcHHHHH--HHHcCCeEEEeeC
Q psy3185 120 DVNILVPGAGLGRLAFE--IARRGYVCQGNEF 149 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~e--la~~G~~v~g~D~ 149 (298)
..+|+++|+|.|.|+-. ||++|++|+-.|-
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~ 34 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEK 34 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEe
Confidence 46899999999998765 7899999999983
No 458
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=73.88 E-value=11 Score=34.06 Aligned_cols=44 Identities=14% Similarity=0.008 Sum_probs=33.7
Q ss_pred CCCeEEEecccCcHHHHHHHHc-C---CeEEEeeCCHHHHHHHHHHHh
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR-G---YVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~-G---~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.+..+-||.||.|.|.--|.-. + -.|.|-|+++.||..|+.-|+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 5689999999999998877654 3 359999999999999887544
No 459
>PLN03139 formate dehydrogenase; Provisional
Probab=73.79 E-value=12 Score=36.52 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=23.0
Q ss_pred CCCeEEEecccCcHHHHHHHHc----CCeEEEeeCCH
Q psy3185 119 KDVNILVPGAGLGRLAFEIARR----GYVCQGNEFSL 151 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~~----G~~v~g~D~S~ 151 (298)
.+.+|..+|+ |+++..+|++ |.+|.+.|.+.
T Consensus 198 ~gktVGIVG~--G~IG~~vA~~L~afG~~V~~~d~~~ 232 (386)
T PLN03139 198 EGKTVGTVGA--GRIGRLLLQRLKPFNCNLLYHDRLK 232 (386)
T ss_pred CCCEEEEEee--cHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4678999985 5666666554 78899998774
No 460
>PRK08324 short chain dehydrogenase; Validated
Probab=73.65 E-value=30 Score=36.03 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=27.0
Q ss_pred CCCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
.+.+||+.|+ |.|+ ++..|+++|+.|.+++.+..-+.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~ 460 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAE 460 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHH
Confidence 3468999996 4444 45556677999999999886544
No 461
>PRK08226 short chain dehydrogenase; Provisional
Probab=73.64 E-value=64 Score=28.44 Aligned_cols=33 Identities=21% Similarity=0.091 Sum_probs=24.0
Q ss_pred CCeEEEecccCcHHHHH----HHHcCCeEEEeeCCHHH
Q psy3185 120 DVNILVPGAGLGRLAFE----IARRGYVCQGNEFSLFM 153 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~e----la~~G~~v~g~D~S~~M 153 (298)
+.++|+.|+. |.++.. |+++|++|..++-+...
T Consensus 6 ~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~ 42 (263)
T PRK08226 6 GKTALITGAL-QGIGEGIARVFARHGANLILLDISPEI 42 (263)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHH
Confidence 5689999975 444444 55579999999988753
No 462
>PRK08703 short chain dehydrogenase; Provisional
Probab=73.34 E-value=61 Score=28.13 Aligned_cols=35 Identities=29% Similarity=0.072 Sum_probs=25.1
Q ss_pred CCeEEEecccCcHHHH----HHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLGRLAF----EIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~----ela~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|| +|.++. .|+++|+.|.+++-+..-+.
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~ 44 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLE 44 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 468999995 444444 45567999999998876443
No 463
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=73.17 E-value=24 Score=31.18 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=25.2
Q ss_pred CCeEEEeccc-CcH-HHHHHHHcCCe-EEEeeCC
Q psy3185 120 DVNILVPGAG-LGR-LAFEIARRGYV-CQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGcG-~Gr-la~ela~~G~~-v~g~D~S 150 (298)
+.+|+++||| +|. ++..|++.|.. ++-+|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 5699999998 344 77778899975 8888887
No 464
>PRK07102 short chain dehydrogenase; Provisional
Probab=72.82 E-value=64 Score=28.10 Aligned_cols=32 Identities=22% Similarity=0.064 Sum_probs=23.2
Q ss_pred CeEEEecccCcHHHHH----HHHcCCeEEEeeCCHHH
Q psy3185 121 VNILVPGAGLGRLAFE----IARRGYVCQGNEFSLFM 153 (298)
Q Consensus 121 ~~VLdpGcG~Grla~e----la~~G~~v~g~D~S~~M 153 (298)
.+||+.|+ +|.++.. |+++|++|.+++-+..-
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~ 37 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVER 37 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 37899994 4555555 55569999999988753
No 465
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=72.76 E-value=20 Score=32.75 Aligned_cols=39 Identities=26% Similarity=0.211 Sum_probs=30.5
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ ++|..+..+|+. |.+|.++.-+......+
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~ 180 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL 180 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH
Confidence 4678999884 688888888876 88999998887765544
No 466
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=72.69 E-value=15 Score=33.55 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=33.5
Q ss_pred CCCCeEEEecccCcHHHHHHH--HcCCeEEEeeCCHHHHHHHHHHHh
Q psy3185 118 PKDVNILVPGAGLGRLAFEIA--RRGYVCQGNEFSLFMLFASNFILN 162 (298)
Q Consensus 118 ~~~~~VLdpGcG~Grla~ela--~~G~~v~g~D~S~~Ml~~a~~~l~ 162 (298)
.++.++||+|-|.-=+=--|- ..||.-+|-|+++..+..|+.++.
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~ 123 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIIS 123 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHH
Confidence 467889999988654322232 238999999999999998887654
No 467
>KOG2539|consensus
Probab=72.68 E-value=7.8 Score=38.49 Aligned_cols=63 Identities=14% Similarity=-0.082 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHHHHHHc--C--CeEEEeeCCHHHHHHHHHHH
Q psy3185 98 TCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARR--G--YVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 98 ~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~ela~~--G--~~v~g~D~S~~Ml~~a~~~l 161 (298)
..|.++...++..--. ..+.....++|+|.|+|.-.+.+... + ..+.-||-|..|+..+...+
T Consensus 180 ~gYa~v~~~~~e~~~~-~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~l 246 (491)
T KOG2539|consen 180 HGYALVTRSNKEINMR-SPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNL 246 (491)
T ss_pred cchHHHHHHHHHHhhc-CcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhh
Confidence 3677777666553210 11234567899999998776665543 2 45899999999998876644
No 468
>PRK05866 short chain dehydrogenase; Provisional
Probab=72.59 E-value=33 Score=31.43 Aligned_cols=36 Identities=33% Similarity=0.359 Sum_probs=25.9
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|+ |.|+ ++..|+++|++|..++-+..-+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~ 78 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLD 78 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 467999997 3343 44556677999999998876543
No 469
>PLN02702 L-idonate 5-dehydrogenase
Probab=72.33 E-value=16 Score=34.39 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=29.1
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+| +|..+..+|+. |.. +.+++-+..-+..++
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 223 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK 223 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 46788888875 57777777765 875 889998877665444
No 470
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=72.13 E-value=5.1 Score=38.92 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCeeEEecccccccc--CCCceeEEEecccccCc--chHHHHHHHHHHhccCCeEEE
Q psy3185 206 CDFSMAAGDFLQVYV--HPNKWDCVATCFFIDCA--NNIVSFIETIFNILKPGGIWI 258 (298)
Q Consensus 206 ~~~~~~~gDf~~~~~--~~~~fD~V~t~ffidta--~n~~~yl~~I~~~LkpGG~~I 258 (298)
.++.++.+++.++.. +++++|.++.+-..|+. +...+.+++|.+.++|||..+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~ 331 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVL 331 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 589999999988764 47999998887777744 456789999999999999987
No 471
>PRK12827 short chain dehydrogenase; Provisional
Probab=72.13 E-value=65 Score=27.86 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=21.7
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeC
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEF 149 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~ 149 (298)
+.+||+.|+ |+|+ ++.+|+++|++|.+++.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence 468999996 3444 45566778999998775
No 472
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=71.98 E-value=38 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=25.2
Q ss_pred eEEEecccC-cH-HHHHHHHcC--CeEEEeeCCHHHHH
Q psy3185 122 NILVPGAGL-GR-LAFEIARRG--YVCQGNEFSLFMLF 155 (298)
Q Consensus 122 ~VLdpGcG~-Gr-la~ela~~G--~~v~g~D~S~~Ml~ 155 (298)
+|..+|||. |+ +++.|+..| .++..+|.......
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~ 39 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAE 39 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhh
Confidence 789999976 43 555567778 57999999876543
No 473
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.97 E-value=37 Score=29.81 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=28.3
Q ss_pred CCeEEEecc--cCcH-HHHHHHHcCCeEEEeeCCHHHHHH
Q psy3185 120 DVNILVPGA--GLGR-LAFEIARRGYVCQGNEFSLFMLFA 156 (298)
Q Consensus 120 ~~~VLdpGc--G~Gr-la~ela~~G~~v~g~D~S~~Ml~~ 156 (298)
+.+||+-|+ |+|+ ++..|+++|++|.+++-+...+..
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANA 46 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence 468999998 5553 666678889999999998865543
No 474
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=71.92 E-value=5 Score=38.24 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=25.6
Q ss_pred CCeEEEeccc-CcH-HHHHHHHcCC-eEEEeeCCH
Q psy3185 120 DVNILVPGAG-LGR-LAFEIARRGY-VCQGNEFSL 151 (298)
Q Consensus 120 ~~~VLdpGcG-~Gr-la~ela~~G~-~v~g~D~S~ 151 (298)
+.+||++||| +|. ++..||+.|. .++-+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5799999999 444 6677888997 688898875
No 475
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=71.73 E-value=19 Score=34.31 Aligned_cols=35 Identities=11% Similarity=-0.043 Sum_probs=25.1
Q ss_pred CceeEEEecccccCcchHHHHHHHHHHhccCCeEEEEecc
Q psy3185 223 NKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262 (298)
Q Consensus 223 ~~fD~V~t~ffidta~n~~~yl~~I~~~LkpGG~~In~gP 262 (298)
..+|+|+.+.. +....+..+.++|+++|.++.+|.
T Consensus 274 ~gvDvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 274 WGADIQVEAAG-----APPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCCEEEECCC-----CcHHHHHHHHHHHHcCCEEEEECC
Confidence 35888876532 223457778889999999998874
No 476
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.52 E-value=8.6 Score=35.60 Aligned_cols=41 Identities=24% Similarity=0.067 Sum_probs=33.7
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFASNFIL 161 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a~~~l 161 (298)
.+|-++|+|+ +.+|..+|..|+.|+..|.++..+..+...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i 48 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRI 48 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence 3899999994 4577778888999999999999998765543
No 477
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=71.31 E-value=8.6 Score=35.42 Aligned_cols=39 Identities=28% Similarity=0.181 Sum_probs=32.1
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFASNF 159 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a~~ 159 (298)
.+|.++|||+ +.++..++..|++|+..|.++..+..+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 3799999994 34777788899999999999999876654
No 478
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=71.30 E-value=4.1 Score=37.39 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=23.0
Q ss_pred CeEEEecccCcHHHHH--HHHcCCeEEEeeCCH
Q psy3185 121 VNILVPGAGLGRLAFE--IARRGYVCQGNEFSL 151 (298)
Q Consensus 121 ~~VLdpGcG~Grla~e--la~~G~~v~g~D~S~ 151 (298)
.+|+++|+|.+.++.. |++.|++|+-+|-++
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 4799999999986554 678899999888653
No 479
>PRK06436 glycerate dehydrogenase; Provisional
Probab=71.27 E-value=8.5 Score=36.11 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=23.4
Q ss_pred CCCeEEEecccC-cH-HHHHHHHcCCeEEEeeCC
Q psy3185 119 KDVNILVPGAGL-GR-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 119 ~~~~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S 150 (298)
.+.+|..+|.|. |+ ++..+...|++|.+.|-+
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 467999999884 65 444344458999999976
No 480
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=71.26 E-value=20 Score=33.07 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCCeEEEeccc--CcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGAG--LGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGcG--~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+| +|..+..+|+. |.+|.++.-|..-...+
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 206 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELA 206 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 46789998875 88899888876 89999998887654433
No 481
>PLN02688 pyrroline-5-carboxylate reductase
Probab=71.22 E-value=30 Score=31.10 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=24.8
Q ss_pred eEEEecccC--cHHHHHHHHcCC----eEEEe-eCCHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGY----VCQGN-EFSLFML 154 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~----~v~g~-D~S~~Ml 154 (298)
+|..+|||. +.++..|.+.|+ ++++. +-+..-.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~ 41 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARR 41 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHH
Confidence 688899885 457777777888 78887 8877643
No 482
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.09 E-value=72 Score=27.96 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=25.6
Q ss_pred CCeEEEecccCcHHHHH----HHHcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFE----IARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~e----la~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|++ |.++.. |+++|++|.+++-+...+.
T Consensus 11 ~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~ 49 (264)
T PRK12829 11 GLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALA 49 (264)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5799999984 444444 4556999999998876544
No 483
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=71.00 E-value=24 Score=32.24 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=27.4
Q ss_pred CCC-eEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHH
Q psy3185 119 KDV-NILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~-~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~ 155 (298)
++. +||+.|+ ++|.++..+|+. |..+..+.-+..-..
T Consensus 144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~ 184 (323)
T TIGR02823 144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEED 184 (323)
T ss_pred CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 356 8999986 578888888865 888887776665443
No 484
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=70.85 E-value=7.5 Score=37.52 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=30.9
Q ss_pred CeEEEecccC-cH--HHHHHHHcCCeEEEeeCCHHHHHHHH
Q psy3185 121 VNILVPGAGL-GR--LAFEIARRGYVCQGNEFSLFMLFASN 158 (298)
Q Consensus 121 ~~VLdpGcG~-Gr--la~ela~~G~~v~g~D~S~~Ml~~a~ 158 (298)
.+|+.+|+|. || ++..|++.|++|+++|....++.+-+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~ 41 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALN 41 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHh
Confidence 3799999985 55 68889999999999998777766543
No 485
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=70.77 E-value=31 Score=31.86 Aligned_cols=36 Identities=28% Similarity=0.099 Sum_probs=27.1
Q ss_pred eEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHH
Q psy3185 122 NILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 122 ~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a 157 (298)
+|.++|+|. +.++..|++.|++|+..+-+...+...
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~ 40 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEI 40 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 689999874 345566777899999999998765543
No 486
>KOG1209|consensus
Probab=70.68 E-value=5.5 Score=35.93 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=26.8
Q ss_pred CCCeEEEecccCcHHHHHHHH----cCCeEEEeeCCHH
Q psy3185 119 KDVNILVPGAGLGRLAFEIAR----RGYVCQGNEFSLF 152 (298)
Q Consensus 119 ~~~~VLdpGcG~Grla~ela~----~G~~v~g~D~S~~ 152 (298)
....||.-||-.|.++++||+ .||.|.+.-=+-+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 457999999999988777765 5999998765543
No 487
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=70.40 E-value=36 Score=31.27 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=17.5
Q ss_pred HHHHHHHcCCeEEEeeCCHHHHH
Q psy3185 133 LAFEIARRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 133 la~ela~~G~~v~g~D~S~~Ml~ 155 (298)
++..|++.|++|++.|.+..-+.
T Consensus 11 mA~~L~~~G~~V~v~dr~~~~~~ 33 (288)
T TIGR01692 11 MAANLLKAGHPVRVFDLFPDAVE 33 (288)
T ss_pred HHHHHHhCCCeEEEEeCCHHHHH
Confidence 55556667999999999987543
No 488
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.39 E-value=8.4 Score=40.51 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=34.8
Q ss_pred CeEEEecccC--cHHHHHHHHcCCeEEEeeCCHHHHHHHHHH
Q psy3185 121 VNILVPGAGL--GRLAFEIARRGYVCQGNEFSLFMLFASNFI 160 (298)
Q Consensus 121 ~~VLdpGcG~--Grla~ela~~G~~v~g~D~S~~Ml~~a~~~ 160 (298)
.+|-++|+|+ ..+|..+|..|+.|+-.|.|+..+..+...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~ 355 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTE 355 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence 4799999999 668888999999999999999998876543
No 489
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=70.36 E-value=4.2 Score=39.06 Aligned_cols=29 Identities=38% Similarity=0.589 Sum_probs=23.9
Q ss_pred eEEEecccC-cH-HHHHHHHcCCeEEEeeCC
Q psy3185 122 NILVPGAGL-GR-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 122 ~VLdpGcG~-Gr-la~ela~~G~~v~g~D~S 150 (298)
+|+++|+|. |. .|++||+.|.+|+-+|-.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 899999994 44 467899999999998853
No 490
>PLN02985 squalene monooxygenase
Probab=70.25 E-value=6 Score=39.83 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=42.5
Q ss_pred HHHHHHHhhhccCChHHHhhhhHHHHHHHHhhCCCCCCCCCCCeEEEecccCcHHHH--HHHHcCCeEEEeeCC
Q psy3185 79 TTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAF--EIARRGYVCQGNEFS 150 (298)
Q Consensus 79 ~~l~~~~RdWs~~g~~ER~~~~~~i~~~l~~~~p~~~~~~~~~~VLdpGcG~Grla~--ela~~G~~v~g~D~S 150 (298)
-+|..|+-.|.--+-..|+..-...++...+.- .....+|+++|+|.+.++. .|++.|++|+-+|-+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 7 WTLLAFVLTWTVFYVTNRKKKATELADAVAEER-----KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhhhhcccC-----cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 366777778876554444432222233322211 2345689999999988655 578889999999965
No 491
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=70.23 E-value=76 Score=27.91 Aligned_cols=35 Identities=23% Similarity=0.100 Sum_probs=25.4
Q ss_pred CCeEEEecccCcHHHHHHH----HcCCeEEEeeCCHHHHH
Q psy3185 120 DVNILVPGAGLGRLAFEIA----RRGYVCQGNEFSLFMLF 155 (298)
Q Consensus 120 ~~~VLdpGcG~Grla~ela----~~G~~v~g~D~S~~Ml~ 155 (298)
+.+||+.|+ +|.++..+| ++|+.|..++-+..-+.
T Consensus 12 ~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~ 50 (259)
T PRK08213 12 GKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELE 50 (259)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 568999994 555555544 56999999998876544
No 492
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=70.08 E-value=43 Score=29.14 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=24.2
Q ss_pred CCeEEEecccCcHHH----HHHHHcCCeEEEeeCCHHHH
Q psy3185 120 DVNILVPGAGLGRLA----FEIARRGYVCQGNEFSLFML 154 (298)
Q Consensus 120 ~~~VLdpGcG~Grla----~ela~~G~~v~g~D~S~~Ml 154 (298)
+.+||+.|++ |.++ ..|++.|+.|..++-+..-.
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~ 40 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAA 40 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence 4689999963 4444 44556799999998887543
No 493
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=70.01 E-value=18 Score=34.21 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=28.1
Q ss_pred CCCeEEEeccc-CcHHHHHHHHc-CCe-EEEeeCCHHHHHHHH
Q psy3185 119 KDVNILVPGAG-LGRLAFEIARR-GYV-CQGNEFSLFMLFASN 158 (298)
Q Consensus 119 ~~~~VLdpGcG-~Grla~ela~~-G~~-v~g~D~S~~Ml~~a~ 158 (298)
++.+||+.|+| +|.++..+|+. |.. |.+++-+..-...++
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~ 225 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAK 225 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 46788888774 45566667765 875 888888887665554
No 494
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=69.83 E-value=6 Score=37.72 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=25.9
Q ss_pred CCeEEEeccc-CcH-HHHHHHHcCC-eEEEeeCCH
Q psy3185 120 DVNILVPGAG-LGR-LAFEIARRGY-VCQGNEFSL 151 (298)
Q Consensus 120 ~~~VLdpGcG-~Gr-la~ela~~G~-~v~g~D~S~ 151 (298)
..+||++||| +|. ++..||+.|. .++-+|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 5799999998 454 6777888997 799999863
No 495
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=69.53 E-value=28 Score=31.23 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.5
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ |+|..+..+|+. |++|..+.-+......+
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 180 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC 180 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4678888885 688888887764 99999988888765433
No 496
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=69.50 E-value=28 Score=31.88 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCCeEEEec--ccCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPG--AGLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpG--cG~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.| .++|..+..+|+. |.+|.+++-+..-...+
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~ 181 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRA 181 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 467888876 4688888888875 99999999888765443
No 497
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=69.38 E-value=27 Score=31.13 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLFAS 157 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~~a 157 (298)
++.+||+.|+ |+|..+..+++. |..|..++-+...+..+
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~ 180 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC 180 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 4678999985 578777777765 99999988887766544
No 498
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=69.34 E-value=22 Score=32.31 Aligned_cols=37 Identities=32% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCCeEEEecc--cCcHHHHHHHHc-CCeEEEeeCCHHHHH
Q psy3185 119 KDVNILVPGA--GLGRLAFEIARR-GYVCQGNEFSLFMLF 155 (298)
Q Consensus 119 ~~~~VLdpGc--G~Grla~ela~~-G~~v~g~D~S~~Ml~ 155 (298)
++.+||+.|+ ++|..+..+++. |..|.++.-+..-..
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~ 201 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLK 201 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 4678999986 788888877765 899988887776443
No 499
>PRK06924 short chain dehydrogenase; Provisional
Probab=69.26 E-value=77 Score=27.63 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=20.4
Q ss_pred eEEEecccCcHH----HHHHHHcCCeEEEeeCCH
Q psy3185 122 NILVPGAGLGRL----AFEIARRGYVCQGNEFSL 151 (298)
Q Consensus 122 ~VLdpGcG~Grl----a~ela~~G~~v~g~D~S~ 151 (298)
+||+.|+ +|.+ +.+|+++|++|.+++-+.
T Consensus 3 ~vlItGa-sggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 3 YVIITGT-SQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred EEEEecC-CchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 6899984 4444 445566799999887664
No 500
>PRK08589 short chain dehydrogenase; Validated
Probab=68.84 E-value=87 Score=28.01 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=23.7
Q ss_pred CCeEEEecccC--cH-HHHHHHHcCCeEEEeeCC
Q psy3185 120 DVNILVPGAGL--GR-LAFEIARRGYVCQGNEFS 150 (298)
Q Consensus 120 ~~~VLdpGcG~--Gr-la~ela~~G~~v~g~D~S 150 (298)
+.+||+.|++. |+ ++..|+++|+.|..++-+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 56899999743 44 455677789999999888
Done!