RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3185
(298 letters)
>gnl|CDD|219653 pfam07942, N2227, N2227-like protein. This family features
sequences that are similar to a region of hypothetical
yeast gene product N2227. This is thought to be
expressed during meiosis and may be involved in the
defence response to stressful conditions.
Length = 268
Score = 315 bits (809), Expect = e-108
Identities = 114/234 (48%), Positives = 147/234 (62%), Gaps = 2/234 (0%)
Query: 67 PLPNSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVP 126
+ D+ KV++TL+Q VRDWS EG ER Y+PII E+ FP + + + ILVP
Sbjct: 5 VNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSRSHDRSKIRILVP 64
Query: 127 GAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTH 186
GAGLGRLA+E+A GY QGNEFS FML SNFILN C+E+N IYP++ N +
Sbjct: 65 GAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQLTRD 124
Query: 187 HQTMAVTFPDINTSDYND-DCDFSMAAGDFLQVYVHPNK-WDCVATCFFIDCANNIVSFI 244
Q V PD++ +FSM AGDFL+VY +D V TCFFID A+N++ +I
Sbjct: 125 DQLRPVQIPDVHPLSELGPRGNFSMCAGDFLEVYGEDANSYDVVVTCFFIDTAHNVLEYI 184
Query: 245 ETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVES 298
+TI ILKPGG WINLGPLLYH+ + +E SIE S E +K++ GF E E
Sbjct: 185 DTIEKILKPGGHWINLGPLLYHFEPLPDEMSIELSLEDIKRLATKRGFKDEKEE 238
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 32.7 bits (75), Expect = 0.046
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 221 HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGI 256
P +D V + + + + + +LKPGG+
Sbjct: 62 DPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 31.5 bits (72), Expect = 0.13
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 44/134 (32%)
Query: 127 GAGLGRLAFEIARRGYVCQ--GNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNIL 184
G G G LA E+AR + G + S ML RE + P
Sbjct: 9 GCGTGSLAIELARLFPGARVTGVDLSPEML-------ELARENAKLALGP---------- 51
Query: 185 THHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFI 244
F GD +D V F +++ +
Sbjct: 52 --------------------RITF--VQGDAPDALDLLEGFDAV---FIGGGGGDLLELL 86
Query: 245 ETIFNILKPGGIWI 258
+ + ++LKPGG +
Sbjct: 87 DALASLLKPGGRLV 100
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 32.5 bits (75), Expect = 0.18
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 113 PETINPKDVNILVPGAGLGRLAFEIARRGY 142
P + + IL G G+G L+ +ARRG
Sbjct: 57 PADGDLTGLRILDAGCGVGSLSIPLARRGA 86
>gnl|CDD|226407 COG3890, ERG8, Phosphomevalonate kinase [Lipid metabolism].
Length = 337
Score = 31.8 bits (72), Expect = 0.35
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 4 KRNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVG-VMFENVPSSEPI 62
K N+ LPE+ + LN +K +D++ K I + + + E + EPI
Sbjct: 212 KVNKWRNSILPEELKCNDEMNSRVLNLIKLSLDESNSKSKAIRRSLRRITEEGLADIEPI 271
Query: 63 KLISPLPNSTDLEKVQTTL 81
K + L + DL V L
Sbjct: 272 KQTAALDSIFDLLGVLCDL 290
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 31.4 bits (71), Expect = 0.58
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 25 KDHLNDLKSCIDKNYEIIKLIIKDVGVMF---ENVPSSEPIKLISPLPNSTDLEKVQTTL 81
+ +DL++ I + IK II D VMF E V S+ + + + DL++VQ L
Sbjct: 288 VNESDDLQNSIKLTRDNIKAIIMD--VMFGGTETVASAIEWAMAELMKSPEDLKRVQQEL 345
Query: 82 KQFV--RDWSEEGSEERKTCYEPIISEILARFPP 113
V EE E+ T + + E L PP
Sbjct: 346 ADVVGLNRRVEESDLEKLTYLKCTLKETLRLHPP 379
>gnl|CDD|235484 PRK05469, PRK05469, peptidase T; Provisional.
Length = 408
Score = 30.9 bits (71), Expect = 0.75
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 78 QTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETI 116
+ L +RD+ EG E RK + I ++ A++ +
Sbjct: 273 EAELSYIIRDFDREGFEARKALMQEIAKKVNAKYGEGRV 311
>gnl|CDD|203179 pfam05148, Methyltransf_8, Hypothetical methyltransferase. This
family consists of several uncharacterized eukaryotic
proteins which are related to methyltransferases
pfam01209.
Length = 219
Score = 29.0 bits (65), Expect = 2.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 239 NIVSFIETIFNILKPGGIW 257
NI F++ ILK GG+
Sbjct: 136 NIADFLKEANRILKNGGLL 154
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal
structure and biogenesis].
Length = 120
Score = 28.0 bits (63), Expect = 2.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 1 MKVKRNEQYLESLPEKHQKLLSKYKDHLNDLKSCI-----DKNYEIIKLIIKDVGV 51
KV LE +P+K KL+ K L+S I +K + KL++ + V
Sbjct: 35 KKVAEALAILEFVPKKAAKLVKKV------LESAIANAENNKGLDPDKLVVSHIAV 84
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 27.6 bits (62), Expect = 2.9
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 226 DCVATCFFIDCANNIVSFIETIFNILKPGGI 256
D V + + + + I +LKPGG
Sbjct: 59 DVVVSSLVLHHLPDPERALREIARVLKPGGK 89
>gnl|CDD|179392 PRK02249, PRK02249, DNA primase large subunit; Validated.
Length = 343
Score = 29.2 bits (66), Expect = 2.9
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 52 MFENVPSSEPIKLISPLPNSTDLEKVQTTLKQFVRDW-SEEGSEERKTCYEPIISEILAR 110
+ + +P + P ++ L LE+++ L++ + E + P + +L+
Sbjct: 178 ILDGLPLAVPEEIAEALLP--LLEEIREELEELDLETEFGTVDPE---LFPPCMKALLSA 232
>gnl|CDD|177875 PLN02230, PLN02230, phosphoinositide phospholipase C 4.
Length = 598
Score = 29.3 bits (65), Expect = 2.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 54 ENVPSSEPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEERKT 98
E+V EP LIS +DL+KV +++ +D E GS E T
Sbjct: 283 EDVWGKEPEDLIS---TQSDLDKVTSSVNDLNQDDEERGSCESDT 324
>gnl|CDD|182918 PRK11036, PRK11036, putative S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 255
Score = 28.8 bits (65), Expect = 3.1
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY 142
+ +LA PP + +L G G G+ A ++A G+
Sbjct: 34 LDRLLAELPPRPLR-----VLDAGGGEGQTAIKLAELGH 67
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 28.0 bits (63), Expect = 6.4
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG 254
P+I T + D S+ AGD V P ++D N + + PG
Sbjct: 70 PEIRTGLFKGGKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKN--------LTKDVSPG 121
Query: 255 GI 256
Sbjct: 122 NT 123
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 26.6 bits (59), Expect = 6.8
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 213 GDFLQ-VYVHPNKWDCVATCFFIDC-ANNIVSFIETIFNILKPGGI 256
GD + +D + + + ++ F+E +LKPGG+
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGV 99
>gnl|CDD|219350 pfam07253, Gypsy, Gypsy protein. This family consists of several
Gypsy/Env proteins from Drosophila and Ceratitis fruit
fly species. Gypsy is an endogenous retrovirus of
Drosophila melanogaster. Phylogenetic studies suggest
that occasional horizontal transfer events of gypsy
occur between Drosophila species. Gypsy possesses
infective properties associated with the products of the
envelope gene that might be at the origin of these
interspecies transfers. This family contains many
members with full-length matches; however, it also
includes a number of very short sequences and short
matches of sequences with other unrelated domains on
them, which cannot be excluded. These matches may
represent remnants of once-functional genes.
Length = 472
Score = 27.9 bits (62), Expect = 7.2
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 7 EQYLESLPEKH-QKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLI 65
+ +S P+ H +KLL DHL + S + E+ I + + + +K++
Sbjct: 45 DMLSDSFPQSHMRKLLQVDTDHLRTMLSVL----EVHHRIARSLDFL------GTALKVV 94
Query: 66 SPLPNSTDLEKVQTTLKQFV 85
+ P++ DL K++ T Q V
Sbjct: 95 AGTPDADDLNKIKNTEAQLV 114
>gnl|CDD|187887 cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Zn-finger domain containing protein, distant homologs of
Cas8 proteins; signature gene for I-C subtype; also
known as Csd1 family.
Length = 569
Score = 28.0 bits (63), Expect = 7.8
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 92 GSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEF 149
E+R E +I EIL P+ P+ +++ G A GY Q
Sbjct: 520 RKEKRAVNLERLIGEILDGLNPDDF-PRTLSL----EEQGEFAL-----GYYHQRQAL 567
>gnl|CDD|220356 pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR
loci appear to be mobile elements with a wide host
range. This entry represents proteins that tend to be
found near CRISPR repeats. The species range, so far, is
exclusively bacterial and mesophilic, although CRISPR
loci are particularly common among the archaea and
thermophilic bacteria. Clusters of short DNA repeats
with nonhomologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins.
Length = 572
Score = 27.6 bits (62), Expect = 8.8
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 96 RKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEF 149
E +I EI+ PE P+ +++ G A GY Q
Sbjct: 527 LAVNLEKLIGEIIDGLDPEDF-PRTLSL----EEQGEFAL-----GYYHQRQAL 570
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit.
Archaeal ATP synthase shares extensive sequence
similarity with eukaryotic and prokaryotic V-type
(H+)-ATPases [Energy metabolism, ATP-proton motive force
interconversion].
Length = 578
Score = 27.8 bits (62), Expect = 8.9
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 11/96 (11%)
Query: 11 ESLPEKHQKLL-----------SKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSS 59
++LPE+ + +L + D K Y I++ I+ E +
Sbjct: 477 DALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIMNFYDEAMEALERG 536
Query: 60 EPIKLISPLPNSTDLEKVQTTLKQFVRDWSEEGSEE 95
P++ I L ++ +++ + +E E+
Sbjct: 537 VPVEEILKLEVKEEIGRMKYEPDNDILAKIDEILEK 572
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 27.4 bits (61), Expect = 9.3
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 85 VRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLG-RLA--FEIARRG 141
+ +++ + + + + + PII EI RF + I +N + GA +G L+ F+ A R
Sbjct: 63 LSEFAPDFAIDLRETFYPIIREI--RF-SDKIYISAINGVTAGACIGIALSTDFKFASRD 119
>gnl|CDD|111994 pfam03158, DUF249, Multigene family 530 protein. Members of this
family are multigene family 530 proteins from African
swine fever viruses. These proteins may be involved in
promoting survival of infected macrophages.
Length = 192
Score = 26.9 bits (60), Expect = 9.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 16/55 (29%)
Query: 16 KHQKL--LSKYKDHLNDLKS---------CIDKNYEIIKLI-----IKDVGVMFE 54
K+ L L KYK+ L+ C ++ Y+IIK I I ++ +F+
Sbjct: 55 KYNMLPILQKYKEDLSGHLYLTQLLFELACEERKYDIIKWIGQNLHIYNLETIFD 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,203,309
Number of extensions: 1463682
Number of successful extensions: 1659
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1653
Number of HSP's successfully gapped: 40
Length of query: 298
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 202
Effective length of database: 6,679,618
Effective search space: 1349282836
Effective search space used: 1349282836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)