RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3185
(298 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 8e-09
Identities = 47/333 (14%), Positives = 106/333 (31%), Gaps = 87/333 (26%)
Query: 5 RNEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKL 64
R +Q + L +S L+ + + E+ L++K + +++P +
Sbjct: 273 RFKQVTDFLSAATTTHIS-----LDHHSMTLTPD-EVKSLLLKYLDCRPQDLPRE--VLT 324
Query: 65 ISPL------------PNSTD------LEKVQTTLKQFVRDWSEEGSEERKTCYEPIISE 106
+P + D +K+ T ++ + E + ++
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDR---- 377
Query: 107 ILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFM-LFASNFILNKCR 165
L+ FP +I P L + F++ + + + + ++ K
Sbjct: 378 -LSVFP------PSAHI--PTILLSLIWFDVIKS-------DVMVVVNKLHKYSLVEKQP 421
Query: 166 EKNVYKIYPW---VQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGD--FLQ--V 218
+++ I ++ N H+++ + T D + D D F
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIG 478
Query: 219 YVH------PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPL------LYH 266
+ H P + F D F+E I W G + L
Sbjct: 479 H-HLKNIEHPERMTLFRMVFL-D-----FRFLEQ--KIRHDSTAWNASGSILNTLQQLKF 529
Query: 267 YSNMLNEDSIEPSYE-VVKQVIQGLGFVYEVES 298
Y + ++ +P YE +V ++ F+ ++E
Sbjct: 530 YKPYICDN--DPKYERLVNAILD---FLPKIEE 557
Score = 47.5 bits (112), Expect = 3e-06
Identities = 47/319 (14%), Positives = 89/319 (27%), Gaps = 101/319 (31%)
Query: 23 KYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLPNSTD--------- 73
+YKD L+ + N++ KDV M +++ S E I I ++
Sbjct: 17 QYKDILSVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 74 LEKVQTTLKQFVRD------------WSEE--GSEERKTCYEPIISEIL---ARFPPETI 116
L K + +++FV + E Y + F +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 117 N-PKDV--------------NILVPG-AGLGR--LAFEIARRGYVCQGNEFSLFMLFASN 158
+ + N+L+ G G G+ +A + VC + M F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD------VCLSYKVQCKMDF--- 182
Query: 159 FILNKCREKNVYKIYPWV----QQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAA-- 212
KI+ W+ + +L Q + ++ D S
Sbjct: 183 ------------KIF-WLNLKNCNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKL 225
Query: 213 ---------GDFLQVYVHPNK-------WDC-VATCFFIDCANNIVSFIETIFNILKPGG 255
L+ + N + F + C + + + + + L
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 256 IWINLGPLLYHYSNMLNED 274
L H+S L D
Sbjct: 286 TTH---ISLDHHSMTLTPD 301
Score = 33.7 bits (76), Expect = 0.083
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 36/159 (22%)
Query: 10 LESLPEKHQKLLSKY----KDHLNDL-KSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKL 64
LE+ H+ ++ Y +DL +D Y +G +N+ E + L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-QY-----FYSHIGHHLKNIEHPERMTL 492
Query: 65 ISPLPNSTDLEKVQTTLKQFVRDWSEEGS---------------EERKTCYEPIISEI-- 107
+ D ++ ++ W+ GS + YE +++ I
Sbjct: 493 FRMV--FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 108 -LARFPPETINPKDVNIL-----VPGAGLGRLAFEIARR 140
L + I K ++L + A + +R
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 42.0 bits (99), Expect = 8e-05
Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 52/160 (32%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163
I E N + L G G L + + + S M L++
Sbjct: 27 IIEKCVEN-----NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEM-------LSE 74
Query: 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223
K + Q + + ++
Sbjct: 75 AENK--------FRSQGLKPRLACQDI---------------SNLNI-----------NR 100
Query: 224 KWDCVATCFF-----IDCANNIVSFIETIFNILKPGGIWI 258
K+D + TC I ++++ + + + N LK GG++I
Sbjct: 101 KFDLI-TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 42.2 bits (99), Expect = 1e-04
Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 56/156 (35%)
Query: 114 ETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREK------ 167
P +L AG+GRL F G+ E S + L R++
Sbjct: 77 TRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSV-------LAAFRKRLAEAPA 129
Query: 168 NVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDC 227
+V VQ D F++ ++
Sbjct: 130 DVRDRCTLVQG-------------------------DMSAFAL-----------DKRFGT 153
Query: 228 VATCFFIDCANNI-----VSFIETIFNILKPGGIWI 258
V N + ++ L+PGG ++
Sbjct: 154 V-VISS-GSINELDEADRRGLYASVREHLEPGGKFL 187
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 42.0 bits (98), Expect = 1e-04
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 220 VHPNKWDCVATCFFIDCA-NNIVSFIETIFNI---LKPGGIWINLGPLLYHY--SNMLNE 273
V DC+ + +D A ++ ++ + N+ LKPGG + + L Y
Sbjct: 153 VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212
Query: 274 DSIEPSYEVVKQVIQGLGF 292
S+ +E V+ ++ G+
Sbjct: 213 SSLPLGWETVRDAVEEAGY 231
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 41.3 bits (97), Expect = 1e-04
Identities = 22/160 (13%), Positives = 43/160 (26%), Gaps = 56/160 (35%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163
I++++ P+ ++L G G + G E S M L
Sbjct: 30 IADLVRSR-----TPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDM-------LTH 77
Query: 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223
R++ + H M DF +
Sbjct: 78 ARKRL------------PDATLHQGDM---------------RDFRL-----------GR 99
Query: 224 KWDCVATCFF-----IDCANNIVSFIETIFNILKPGGIWI 258
K+ V F + + + + + L+PGG+ +
Sbjct: 100 KFSAV-VSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 41.4 bits (97), Expect = 2e-04
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 56/160 (35%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNK 163
++ ++ R +PK ++L G G +A +G E S M L
Sbjct: 40 LAALVRRH-----SPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADM-------LAI 87
Query: 164 CREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPN 223
R +N + + HH M DFS+
Sbjct: 88 ARRRNP------------DAVLHHGDM---------------RDFSL-----------GR 109
Query: 224 KWDCVATCFF-----IDCANNIVSFIETIFNILKPGGIWI 258
++ V TC F + + + +E + P G+ +
Sbjct: 110 RFSAV-TCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV 148
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 40.2 bits (94), Expect = 3e-04
Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 52/200 (26%)
Query: 102 PIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFIL 161
+ + + P I L G GR A +A GY + S L
Sbjct: 19 DFLVSVANQIPQGKI-------LCLAEGEGRNACFLASLGYEVTAVDQSSVGL---AKAK 68
Query: 162 NKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVH 221
+EK V I T + +
Sbjct: 69 QLAQEKGV------------KITTVQ-------------------------SNLADFDIV 91
Query: 222 PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI----NLGPLLYHYSNMLNEDSIE 277
+ W+ + + F ++ ++ LKPGG++I L Y+ + D +
Sbjct: 92 ADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLL- 150
Query: 278 PSYEVVKQVIQGLGFVYEVE 297
P E ++ + L ++
Sbjct: 151 PKLETLQSELPSLNWLIANN 170
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 38.7 bits (90), Expect = 0.001
Identities = 30/170 (17%), Positives = 49/170 (28%), Gaps = 49/170 (28%)
Query: 94 EERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFM 153
R + I + F E + +L G G E+A RGY G + M
Sbjct: 17 RRRIERVKAEIDFVEEIFK-EDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEM 75
Query: 154 LFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAG 213
L R K ++ + I + + +
Sbjct: 76 -------LRVARRK--------AKERNLKIEFLQGDV---------------LEIAF--- 102
Query: 214 DFLQVYVHPNKWDCVATCFFIDCAN-----NIVSFIETIFNILKPGGIWI 258
N++D V T FF ++ + LKPGG++I
Sbjct: 103 --------KNEFDAV-TMFF-STIMYFDEEDLRKLFSKVAEALKPGGVFI 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 65/410 (15%), Positives = 115/410 (28%), Gaps = 175/410 (42%)
Query: 6 NEQYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIK---DVGVMFENV------ 56
+ Y E L + L Y + DL I + E + +I+ D +F
Sbjct: 166 TDDYFEEL----RDLYQTYHVLVGDL---IKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 57 ---PSSEPIK--LIS-----PLPNSTDLEKVQTTLKQF------VRDWSEEGSEERKTCY 100
PS+ P K L+S PL L T K +R + + +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT----GHS 274
Query: 101 EPIIS---------------------EIL----AR----FPPETINPK------DVNILV 125
+ +++ +L R +P ++ P + N V
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 126 PG-----AGLGRLAFE-----------------IA----RRGYVCQGNEFSLFML----- 154
P + L + + I+ + V G SL+ L
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 155 ---------------------FASNF----------ILNKCREKNVYKIYPWVQQTDNNI 183
F++ F +L + I + + NN+
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD----LINKDLVK--NNV 448
Query: 184 LTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFL--QVYVHPNKWDCVATCFFIDCANNIV 241
+ + + + P +T D +D S + + + + P KW+ T F A +I+
Sbjct: 449 SFNAKDIQI--PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE--TTTQF--KATHIL 502
Query: 242 SFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLG 291
F PGG LG L + G G
Sbjct: 503 DF--------GPGGA-SGLGVL-------------------THRNKDGTG 524
Score = 30.0 bits (67), Expect = 1.1
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 42/136 (30%)
Query: 85 VRD-WSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV 143
+D W K Y I +I+ NP ++ I G R+ R Y
Sbjct: 1642 AQDVW-NRADNHFKDTYGFSILDIVIN------NPVNLTIHFGGEKGKRI-----RENY- 1688
Query: 144 CQGNEFSLFMLFASNFILNKCREKNVYKI-------YPWVQQTDNNILTHHQTMAVTFPD 196
M+F + + K + + ++K Y + +++ +L+ T T P
Sbjct: 1689 -------SAMIFET-IVDGKLKTEKIFKEINEHSTSYTF--RSEKGLLS--AT-QFTQPA 1735
Query: 197 INTSDYNDDCDFSMAA 212
+ AA
Sbjct: 1736 LTL--------MEKAA 1743
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine
methyltransferase, structural genomics, PSI, protein
structure initiative; HET: SAH; 1.25A {Mus musculus}
PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Length = 252
Score = 37.1 bits (85), Expect = 0.004
Identities = 18/150 (12%), Positives = 39/150 (26%), Gaps = 23/150 (15%)
Query: 111 FPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVY 170
+ + P G A RG+ G E S I E+N+
Sbjct: 60 LDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEIS------EIGIREFFAEQNLS 113
Query: 171 KIYPWVQQTDNNILTHHQTMAVTF--PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCV 228
+ + + + +++ I + F WD
Sbjct: 114 YTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRI-------------WDRG 160
Query: 229 ATCFFIDCANNIVSFIETIFNILKPGGIWI 258
A + + + I ++L+ ++
Sbjct: 161 ALVAINPG--DHDRYADIILSLLRKEFQYL 188
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 35.9 bits (83), Expect = 0.009
Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 44/159 (27%)
Query: 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNF 159
Y ++ +L + P I G G G +A Y G + S ML
Sbjct: 20 YPEWVAWVLEQVEPGK------RIADIGCGTGTATLLLAD-HYEVTGVDLSEEML----- 67
Query: 160 ILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVY 219
+EK +T+ ++ Q D+ + + D D L
Sbjct: 68 --EIAQEK--------AMETNRHVDFWVQ-------DMRELELPEPVDAITILCDSLN-- 108
Query: 220 VHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI 258
++ ++ ++ +L GG +
Sbjct: 109 -------------YLQTEADVKQTFDSAARLLTDGGKLL 134
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 35.4 bits (81), Expect = 0.014
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 114 ETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFS 150
+T + LVPG G G +A G + S
Sbjct: 61 DTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDIS 97
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 35.4 bits (81), Expect = 0.014
Identities = 19/180 (10%), Positives = 38/180 (21%), Gaps = 49/180 (27%)
Query: 83 QFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY 142
+ R+ + P + + P+ +L G G G A +
Sbjct: 13 RLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQT-RVLEAGCGHGPDAARFGPQAA 71
Query: 143 VCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDY 202
+FS + L R P + + P
Sbjct: 72 RWAAYDFSPEL-------LKLARAN-----AP-------HADVYEWNGKGELP------A 106
Query: 203 NDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGP 262
F + + I + + P ++ +GP
Sbjct: 107 GLGAPF-----------------GLIVSRRGPTSV------ILRLPELAAPDAHFLYVGP 143
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine,
drug metabolism; NMR {Pseudomonas syringae PV} SCOP:
c.66.1.36
Length = 203
Score = 34.0 bits (77), Expect = 0.034
Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 30/155 (19%)
Query: 104 ISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFML---FASNFI 160
+++ L ++ +LVP G + ++ +GY G E S + F
Sbjct: 7 VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGE 66
Query: 161 LNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYV 220
+ +K+Y + A+T DI D +A +
Sbjct: 67 QPHITSQGDFKVY----AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIA--------L 114
Query: 221 HPNKWDCVATCFFIDCANNIVSFIETIFNILKPGG 255
+ + +++ + ++
Sbjct: 115 PADMRER---------------YVQHLEALMPQAC 134
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 34.0 bits (77), Expect = 0.045
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 222 PNKWDCVATCFFIDCA-NNIVSFIETIFNI---LKPGGIWINLGPL--LYHYSNMLNEDS 275
P D + + F ++ ++ SF + +I L+PGG + +G L ++ +
Sbjct: 172 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV 231
Query: 276 IEPSYEVVKQVIQGLGF 292
+ S E V++ + G+
Sbjct: 232 VPVSEEEVREALVRSGY 248
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 33.6 bits (77), Expect = 0.045
Identities = 17/144 (11%), Positives = 37/144 (25%), Gaps = 47/144 (32%)
Query: 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177
P+ IL G G GR+ ++++G+ G + + ++ ++
Sbjct: 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPIL-------IDYAKQD---------- 87
Query: 178 QTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCV---ATCFFI 234
FP+ GD + +D +
Sbjct: 88 ----------------FPEAR-----------WVVGDLSVDQISETDFDLIVSAGNVMGF 120
Query: 235 DCANNIVSFIETIFNILKPGGIWI 258
+ + I L G +
Sbjct: 121 LAEDGREPALANIHRALGADGRAV 144
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 33.8 bits (77), Expect = 0.051
Identities = 20/184 (10%), Positives = 48/184 (26%), Gaps = 54/184 (29%)
Query: 84 FVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYV 143
++ D +E + + +L + + DV G G + + G+
Sbjct: 34 YIGDTRSRTAEYKA-----WLLGLLRQHGCHRV--LDV-----ACGTGVDSIMLVEEGFS 81
Query: 144 CQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYN 203
+ S M L ++ + + N +
Sbjct: 82 VTSVDASDKM-------LKYALKER--------WNRRKEPAFDKWVIE----EANWLTLD 122
Query: 204 DDCDFSMAAGDFLQVYVHPNKWDCVATCFF---------IDCANNIVSFIETIFNILKPG 254
D + +D V C + ++ I ++++PG
Sbjct: 123 KDVPA-------------GDGFDAV-ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 168
Query: 255 GIWI 258
G+ +
Sbjct: 169 GLLV 172
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 32.8 bits (74), Expect = 0.12
Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 222 PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWI-------NLGPLLYH-YSNMLNE 273
KWD + + +I + ++ ++L + + L+ Y + +
Sbjct: 133 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQ 192
Query: 274 DSIEP--SYEVVKQVIQGLGFVYEVE 297
D + + + + Q++ LG YE
Sbjct: 193 DDLCQYITSDDLTQMLDNLGLKYECY 218
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 31.8 bits (72), Expect = 0.20
Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 57/206 (27%)
Query: 87 DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQG 146
D + + R EP++ + + K +L G+G +F + G+ G
Sbjct: 15 DINSQEYRSRIETLEPLLMKYM---------KKRGKVLDLACGVGGFSFLLEDYGFEVVG 65
Query: 147 NEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDC 206
+ S M + K RE +
Sbjct: 66 VDISEDM-------IRKAREY-------------------------------AKSRESNV 87
Query: 207 DFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNI-----VSFIETIFNILKPGGIWINLG 261
+F + GD ++ +D V FID + + + +LKP G +I
Sbjct: 88 EFIV--GDARKLSFEDKTFDYV---IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 142
Query: 262 PLLYHYSNMLNEDSIEPSYEVVKQVI 287
L L E + + +VI
Sbjct: 143 TDLRELLPRLKESLVVGQKYWISKVI 168
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 31.8 bits (72), Expect = 0.21
Identities = 7/87 (8%), Positives = 25/87 (28%), Gaps = 10/87 (11%)
Query: 71 STDLEKVQTTLKQFVR---DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPG 127
+T +++ L + ++ + + + A + ++
Sbjct: 2 TTSHGLIESQLSYYRARASEYDATFVPYMDSAAPAALERLRAGNIRGDV--LEL-----A 54
Query: 128 AGLGRLAFEIARRGYVCQGNEFSLFML 154
+G G ++ + S M+
Sbjct: 55 SGTGYWTRHLSGLADRVTALDGSAEMI 81
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 31.2 bits (70), Expect = 0.28
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 118 PKDVNILVPGAGLGRLAFEIARRGY 142
+ ILV G G L++E+ G+
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGF 65
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 31.3 bits (71), Expect = 0.28
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 101 EPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFML 154
E ++ + D IL G+G GR +A G+ +G E + ++
Sbjct: 27 EDPDRVLIEPWAT----GVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLV 76
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 30.6 bits (69), Expect = 0.39
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 100 YEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFML 154
+++ L P IL G G G A + G+ + S +
Sbjct: 30 RSATLTKFLGELPAGA------KILELGCGAGYQAEAMLAAGFDVDATDGSPELA 78
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 30.4 bits (68), Expect = 0.51
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 209 SMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGIWINLGPLLYH 266
+ P+ +D + + I + + F+ L+P GI + +
Sbjct: 131 NYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 190
Query: 267 YSNMLNED-SIEPSYEVVKQVIQGLGF 292
+ + D S+ +VV+++I G
Sbjct: 191 GVILDDVDSSVCRDLDVVRRIICSAGL 217
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 30.5 bits (69), Expect = 0.54
Identities = 23/167 (13%), Positives = 53/167 (31%), Gaps = 51/167 (30%)
Query: 99 CYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQ--GNEFSLFMLFA 156
C++ ++ +++ ++ +IL GAG G L+ + + + S M
Sbjct: 27 CFDDFYGVSVSI---ASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKM--- 80
Query: 157 SNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFL 216
L + + + + + D + D+
Sbjct: 81 ----LEIAKNRF---------RGNLKVKYIEA-------DYSKYDF-------------- 106
Query: 217 QVYVHPNKWDCVATCF---FIDCANNIVSFIETIFNILKPGGIWINL 260
K+D V + ++ + + ++ILK GI+IN
Sbjct: 107 -----EEKYDMVVSALSIHHLEDE-DKKELYKRSYSILKESGIFINA 147
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 30.2 bits (68), Expect = 0.61
Identities = 30/172 (17%), Positives = 46/172 (26%), Gaps = 50/172 (29%)
Query: 87 DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQG 146
D +G + + +IL N+L G G G L ++ G G
Sbjct: 17 DSFVQGEDIQYKEVFAHYEDILEDVVN----KSFGNVLEFGVGTGNLTNKLLLAGRTVYG 72
Query: 147 NEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDC 206
E S M +EK P
Sbjct: 73 IEPSREM-------RMIAKEK--------------------------LPK---------- 89
Query: 207 DFSMAAGDFLQVYVHPNKWDCVATCFFIDCANN--IVSFIETIFNILKPGGI 256
+FS+ GDFL + P D + + + + I +L GG
Sbjct: 90 EFSITEGDFLS-FEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGK 140
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 30.2 bits (68), Expect = 0.69
Identities = 29/226 (12%), Positives = 67/226 (29%), Gaps = 55/226 (24%)
Query: 75 EKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLA 134
E + W++ E + I ++ K+ +L G G G
Sbjct: 14 ESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVK-----KEAEVLDVGCGDGYGT 68
Query: 135 FEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTF 194
++++R GY G + S M + K +E+ +++ D ++ F
Sbjct: 69 YKLSRTGYKAVGVDISEVM-------IQKGKERGEGPDLSFIKG-D--------LSSLPF 112
Query: 195 PDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPG 254
+ +++ + ++ + + I +LK
Sbjct: 113 EN--------------------------EQFEAIMAINSLEWTEEPLRALNEIKRVLKSD 146
Query: 255 GIWI------NLGPLLYHYSNMLNEDSIE--PSYEVVKQVIQGLGF 292
G P Y + +D + +Q+++ GF
Sbjct: 147 GYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGF 192
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 29.9 bits (67), Expect = 0.99
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 43/139 (30%)
Query: 122 NILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQQTDN 181
+L G G GR + ++ GY + + + F+ ++N+
Sbjct: 123 KVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSI---AFLNETKEKENL------------ 167
Query: 182 NILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCAN--N 239
NI T DIN ++ +D + + N
Sbjct: 168 NISTALY-------DINAANI-------------------QENYDFIVSTVVFMFLNRER 201
Query: 240 IVSFIETIFNILKPGGIWI 258
+ S I+ + GG +
Sbjct: 202 VPSIIKNMKEHTNVGGYNL 220
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 29.4 bits (66), Expect = 1.1
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 105 SEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGY 142
SE+L + P L G G GR + +A GY
Sbjct: 22 SEVLEAVKV--VKPGKT--LDLGCGNGRNSLYLAANGY 55
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 29.1 bits (65), Expect = 1.4
Identities = 27/162 (16%), Positives = 43/162 (26%), Gaps = 50/162 (30%)
Query: 100 YEPIISEILARFPPETINPK--DVNILVPGAGLGRLAFEIARR-GYVCQGNEFSLFMLFA 156
+P + L ++ D GAG I GY G E S
Sbjct: 7 RQPQLYRFLKYCNESNLDKTVLDC-----GAGGDLPPLSIFVEDGYKTYGIEISDLQ--- 58
Query: 157 SNFILNKCREKNVYKIYPWVQQTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFL 216
L K + + N + + GD
Sbjct: 59 ----LKKAENF-------------------------------SRENNFKLNI--SKGDIR 81
Query: 217 QVYVHPNKWDCVATCFFIDC--ANNIVSFIETIFNILKPGGI 256
++ V + I N++ I+ I +LKPGG+
Sbjct: 82 KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL 123
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 29.1 bits (65), Expect = 1.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 127 GAGLGRLAFEIARRGYVCQGNEFSLFML 154
G G GR+A + RGY + ML
Sbjct: 47 GVGTGRIALPLIARGYRYIALDADAAML 74
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 29.0 bits (65), Expect = 1.6
Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 46/183 (25%)
Query: 118 PKDVNILVPGAGLGRLAFEIARRGYVCQGNEFSLFMLFASNFILNKCREKNVYKIYPWVQ 177
+L G G G+ + + RG+ + S M L REK V V+
Sbjct: 53 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEM-------LEVAREKGVKN---VVE 102
Query: 178 QTDNNILTHHQTMAVTFPDINTSDYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFFIDCA 237
+ FP + +A GD L + +K
Sbjct: 103 AK---------AEDLPFPS-------GAFEAVLALGDVLSYVENKDK------------- 133
Query: 238 NNIVSFIETIFNILKPGGIWINLGPLLYHY-SNMLNEDSIEPSYEVVKQVIQGLGF-VYE 295
I +L P G+ I Y + M+ +D+ + +K +G ++
Sbjct: 134 -----AFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFS 188
Query: 296 VES 298
S
Sbjct: 189 FNS 191
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 28.9 bits (64), Expect = 1.9
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 224 KWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVV 283
+ VA + + F++ F LK G+ ++++ + + E E +
Sbjct: 182 ELKDVADRVIMGYVHKTHKFLDKTFEFLKDRGV-------IHYHETVAEKIMYERPIERL 234
Query: 284 KQVIQGLGFVYEVES 298
K + G+
Sbjct: 235 KFYAEKNGYKLIDYE 249
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 28.9 bits (64), Expect = 2.1
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 201 DYNDDCDFSMAAGDFLQVYVHPNKWDCVATCFF-----IDCANNIVSFIETIFNILKPGG 255
+ A D ++ K V + F + ++ I L+PGG
Sbjct: 109 NMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGG 168
Query: 256 IWINLGPLLYHYSNMLNEDSIEPSYEVVK 284
+I P + + + ++
Sbjct: 169 YFIMTVPSRDVILERYKQGRMSNDFYKIE 197
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 28.7 bits (64), Expect = 2.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 127 GAGLGRLAFEIARRGYVCQGNEFSLFML 154
GAG G + +A +G E S+ M
Sbjct: 42 GAGTGGYSVALANQGLFVYAVEPSIVMR 69
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 28.5 bits (63), Expect = 2.6
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 220 VHPNKWDCVATCFFIDCA-NNIVSFIETIFNI---LKPGGIWINLGPL 263
DCV T ++CA ++ ++ + N+ LKPGG + L
Sbjct: 152 AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 28.4 bits (63), Expect = 3.1
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 243 FIETIFNILKPGGIWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGFVYEVES 298
FI +I K G I +++++ + + +E K++ + G+ E +
Sbjct: 207 FIPKALSIAKDGAI-------IHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 255
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 27.8 bits (62), Expect = 3.5
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 4/35 (11%)
Query: 222 PNKWDCVATCFFIDCANNIVSFIETIFNILKPGGI 256
P+ D + FI + L GG
Sbjct: 92 PDNPDVI----FIGGGLTAPGVFAAAWKRLPVGGR 122
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.1
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 74 LEKVQTTLKQFVRD 87
L+K+Q +LK + D
Sbjct: 22 LKKLQASLKLYADD 35
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 27.9 bits (62), Expect = 4.4
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 238 NNIVSFIETIFNILKPGG-IWINLGPLLYHYSNMLNEDSIEPSYEVVKQVIQGLGF 292
+ +SF + + LKP G ++ G Y + SI ++ V+ ++I +GF
Sbjct: 61 DWFLSFAKVVNKKLKPDGSFVVDFGGA---YMKGVPARSI-YNFRVLIRMIDEVGF 112
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 27.8 bits (62), Expect = 4.5
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 112 PPETINPKDVNILVPGAGL--GRLAFEIARRGY 142
P+ P V L+ G G A I R
Sbjct: 3 VPQDKAPSHVPFLLIGGGTAAFAAARSIRARDP 35
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A
{Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Length = 163
Score = 27.2 bits (61), Expect = 5.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 115 TINPKDVN---ILV--PGAGLGRLAFEIARR 140
T PK V +L+ G LGRLA +IA
Sbjct: 26 TYVPKQVEPRWVLIDAEGKTLGRLATKIATL 56
>1ogl_A Dutpase, deoxyuridine triphosphatase; hydrolase, native, X-RAY,
dimer; 2.4A {Trypanosoma cruzi} SCOP: a.204.1.1 PDB:
1ogk_A
Length = 283
Score = 27.2 bits (59), Expect = 6.2
Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 13/183 (7%)
Query: 10 LESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGVMFENVPSSEPIKLISPLP 69
++S P K K + D N D + + I E +K + +
Sbjct: 54 IDSYPWKWWKNVKAQTDMHNVRIEIADILHFSLSGEI-QKRTQDEKGADDVALKSLKEMG 112
Query: 70 NSTDLEKVQTTLKQFVRDWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAG 129
+ + + + E + + +
Sbjct: 113 FFCRPPAHAKSTAASGQRTNGGDGDGDDELLELMFFPLTE------VASAVATFRNIIQL 166
Query: 130 LGRLAFEIARRGYVCQGNE--FSLFMLFASNFILNKCREKNVYK----IYPWVQQTDNNI 183
F++ +G + + F+L + + + LN+ R+ YK + DN +
Sbjct: 167 ASIYRFDLITKGLLLAAQDLDFNLVGYYVAKYTLNQIRQLKGYKEGVYVKVREGVEDNEL 226
Query: 184 LTH 186
L
Sbjct: 227 LHE 229
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 27.0 bits (60), Expect = 6.4
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 5/68 (7%)
Query: 87 DWSEEGSEERKTCYEPIISEILARFPPETINPKDVNILVPGAGLGRLAFEIARRGYVCQG 146
+ E+ Y + +L E D+ G G L I G G
Sbjct: 5 PKNSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDI-----GCSSGALGAAIKENGTRVSG 59
Query: 147 NEFSLFML 154
E
Sbjct: 60 IEAFPEAA 67
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H*
1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G*
3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Length = 174
Score = 26.8 bits (60), Expect = 6.9
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 102 PIISEILARFPPETINPKDVN---ILV--PGAGLGRLAFEIARR 140
P S +L F +T PK+ ++V G LGRLA IA R
Sbjct: 18 PAKSPLLRSFKVKTYIPKNDEQNWVVVDASGVPLGRLATLIASR 61
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 27.1 bits (60), Expect = 7.2
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 213 GDFLQVYVHPNKWDCVATCFFIDCANNI---VSFIETIFNILKPGGI 256
G FL++ N +D + + D + + + +LKP G+
Sbjct: 139 GSFLEIPCEDNSYDFI---WSQDAFLHSPDKLKVFQECARVLKPRGV 182
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N
2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N
2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Length = 140
Score = 26.3 bits (59), Expect = 7.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 115 TINPKDVN---ILV--PGAGLGRLAFEIARR 140
T PK V +L+ G LGRLA +IA
Sbjct: 3 TYVPKQVEPRWVLIDAEGKTLGRLATKIATL 33
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix
domain, phosphoribosyltranseferases, domain
recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE;
2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB:
1p4a_A*
Length = 291
Score = 26.9 bits (60), Expect = 8.0
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 1 MKVKRNE------QYLESLPEKHQKLLSKYKDHLNDLKSCIDKNYEIIKLIIKDVGV-MF 53
MK +R+ YL + P + L+ + + KS I ++ IIK + G+
Sbjct: 1 MKFRRSGRLVDLTNYLLTHPHELIP-LTFFSERYESAKSSISEDLTIIKQTFEQQGIGTL 59
Query: 54 ENVP-SSEPIKLISPLPNSTDLEKVQTTLKQFVRD 87
VP ++ +K I P + E+ TL Q + +
Sbjct: 60 LTVPGAAGGVKYI-PKMKQAEAEEFVQTLGQSLAN 93
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein,
gene regulation; 2.90A {Aquifex aeolicus} SCOP:
b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Length = 706
Score = 27.0 bits (59), Expect = 8.9
Identities = 8/57 (14%), Positives = 18/57 (31%)
Query: 218 VYVHPNKWDCVATCFFIDCANNIVSFIETIFNILKPGGIWINLGPLLYHYSNMLNED 274
V + ++ + F++ + N LK GI + + + E
Sbjct: 347 VKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEA 403
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0838 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,580,759
Number of extensions: 271280
Number of successful extensions: 807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 798
Number of HSP's successfully gapped: 63
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)