BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3195
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 28/40 (70%)
Query: 69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS 108
C NC REA +EC+ C + YCSTFCQRKDW HQ C +S
Sbjct: 12 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 51
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And Bs69
Mynd Domains
Length = 47
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS 108
+ C NC REA +EC+ C + YCSTFCQRKDW HQ C +S
Sbjct: 3 MEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 46
>pdb|2OD1|A Chain A, Solution Structure Of The Mynd Domain From Human Aml1-Eto
Length = 60
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 56 PLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
P + N D C NC R+A CS C YC +FCQ KDW H C ++ Q
Sbjct: 3 PNSGSPNSDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 57
>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti
(Protein Mtg8)
Length = 60
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 55 GPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
G I + D C NC R+A CS C YC +FCQ KDW H C
Sbjct: 4 GSSGINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 54
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 69 CANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C +E ++C C+Q YC CQ++DW H++EC
Sbjct: 54 CCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC 90
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 44.7 bits (104), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E ++C C+Q YC+ CQ++DW H++EC
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E ++C C+Q YC+ CQ++DW H++EC
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E ++C C+Q YC+ CQ++DW H++EC
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDWPMHKLEC 90
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 64 DLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
D C NC R+A CS C YC +FCQ KDW H C ++ Q
Sbjct: 15 DSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 61
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E CS CR YCS CQ+K W H+ EC
Sbjct: 85 CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 123
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E CS CR YCS CQ+K W H+ EC
Sbjct: 51 CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 89
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E CS CR YCS CQ+K W H+ EC
Sbjct: 50 CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 88
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E CS CR YCS CQ+K W H+ EC
Sbjct: 49 CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 87
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E CS CR YCS CQ+K W H+ EC
Sbjct: 49 CDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 87
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E CS CR YCS CQ+K W H+ EC
Sbjct: 50 CDRCLLGKEKLXRCSQCRVAKYCSAKCQKKAWPDHKREC 88
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 66 RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
R RCA C+ EA CS C+ YC CQ K W H CV + Q
Sbjct: 15 RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ 59
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain (Leu384-Cys430)
Of Human Zinc Finger Mynd Domain Containing Protein 10
Length = 60
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 66 RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
R RCA C+ EA CS C+ YC CQ K W H C
Sbjct: 15 RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 54
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 69 CANC--NREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C +E C C+ YC CQ+ W H+ EC
Sbjct: 52 CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNEC 90
>pdb|3NVN|B Chain B, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|B Chain B, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|F Chain F, Molecular Mechanism Of Guidance Cue Recognition
Length = 476
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 66 RTRCANCNREAFAECSMCRQT--PYCSTFCQRKDWTTHQVECVRSDQIMLIVDTT 118
R R ANCN+ CS C P+C +C T Q +CV S+ + +D +
Sbjct: 415 RIRVANCNKH--KSCSECLTATDPHCG-WCHSLQRCTFQGDCVHSENLENWLDIS 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.128 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,102,068
Number of Sequences: 62578
Number of extensions: 99262
Number of successful extensions: 168
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 20
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)