Query psy3195
Match_columns 119
No_of_seqs 144 out of 1218
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:44:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2odd_A Protein CBFA2T1; MYND z 99.6 7.3E-17 2.5E-21 101.2 3.1 60 43-110 2-61 (64)
2 3qww_A SET and MYND domain-con 99.5 7.2E-15 2.5E-19 120.5 3.4 77 34-110 15-95 (433)
3 3qwp_A SET and MYND domain-con 99.5 1.4E-14 4.9E-19 118.2 4.2 76 35-110 14-93 (429)
4 3n71_A Histone lysine methyltr 99.5 2.2E-14 7.5E-19 119.3 4.3 82 29-110 10-95 (490)
5 2dj8_A Protein CBFA2T1; zinc f 99.4 1.8E-13 6.1E-18 84.8 3.5 46 65-110 14-59 (60)
6 2d8q_A BLU protein, zinc finge 99.4 3.5E-13 1.2E-17 86.2 4.4 46 65-110 14-59 (70)
7 2od1_A Protein CBFA2T1; zinc f 99.4 2.4E-13 8.2E-18 84.3 3.4 46 65-110 12-57 (60)
8 2jw6_A Deformed epidermal auto 99.4 1.5E-13 5.3E-18 82.4 2.0 44 65-108 8-51 (52)
9 2yqq_A Zinc finger HIT domain- 96.9 0.00074 2.5E-08 41.1 3.0 38 67-109 13-50 (56)
10 1x4s_A Protein FON, zinc finge 93.3 0.042 1.4E-06 33.6 2.0 34 67-106 12-49 (59)
11 1lv3_A Hypothetical protein YA 60.2 6.2 0.00021 24.5 2.4 33 66-99 9-41 (68)
12 2l8e_A Polyhomeotic-like prote 49.1 11 0.00037 21.8 2.1 30 66-96 18-47 (49)
13 2w0t_A Lethal(3)malignant brai 43.1 18 0.00063 20.4 2.4 29 68-96 8-36 (43)
14 2d8v_A Zinc finger FYVE domain 37.4 10 0.00034 23.5 0.7 28 65-93 7-34 (67)
15 1wfh_A Zinc finger (AN1-like) 23.0 33 0.0011 20.9 1.2 25 65-91 14-41 (64)
16 1wfp_A Zinc finger (AN1-like) 22.3 35 0.0012 21.3 1.3 25 65-91 24-51 (74)
17 1wg2_A Zinc finger (AN1-like) 21.9 32 0.0011 20.9 1.0 25 65-91 14-41 (64)
18 3j20_Y 30S ribosomal protein S 21.1 36 0.0012 19.4 1.1 23 66-88 19-48 (50)
19 1ffk_W Ribosomal protein L37AE 20.1 37 0.0013 21.1 1.1 22 65-86 26-54 (73)
No 1
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=7.3e-17 Score=101.18 Aligned_cols=60 Identities=37% Similarity=0.721 Sum_probs=43.0
Q ss_pred cCCCCCceEEecCCeeEeecCCcccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195 43 IRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110 (119)
Q Consensus 43 ~~~~~G~~i~~~~p~~~v~~~~~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~ 110 (119)
++|.+|++|+.+.| ....|..|+++++++|++|+.++|||++||+.||+.|+.+|..+.+
T Consensus 2 ~~~~~G~~il~~~~--------~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~~ 61 (64)
T 2odd_A 2 NLYFQGENLYFQGD--------SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 61 (64)
T ss_dssp -------------C--------CSSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSCS
T ss_pred CcCCCCCEEeeCCC--------CCCcCccccCCCcccCCCCCChhhCCHHHHHHHHHHHhHHHhcccc
Confidence 57999999987777 3468999999999999999999999999999999999999997654
No 2
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.49 E-value=7.2e-15 Score=120.55 Aligned_cols=77 Identities=21% Similarity=0.436 Sum_probs=67.5
Q ss_pred hhcc-CcccccCCCCCceEEecCCeeEeec-CCccccccccccc--ccccCccCcccccCCHHHHHHhHHHHHHhccccc
Q psy3195 34 ESAS-LPVLPIRLSIGNTAQVQGPLTIVEN-IDLRTRCANCNRE--AFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSD 109 (119)
Q Consensus 34 e~~~-~~~a~~~~~~G~~i~~~~p~~~v~~-~~~~~~C~~C~k~--~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~ 109 (119)
...+ +.+|+++|++|++|+.++|+..+.. ......|.+|++. .+.+|++|+.++|||++||+.||+.||.+|..+.
T Consensus 15 ~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~ 94 (433)
T 3qww_A 15 AGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMV 94 (433)
T ss_dssp TTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHH
T ss_pred CCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHH
Confidence 3444 8899999999999999999987664 4578899999985 7999999999999999999999999999998765
Q ss_pred c
Q psy3195 110 Q 110 (119)
Q Consensus 110 ~ 110 (119)
.
T Consensus 95 ~ 95 (433)
T 3qww_A 95 V 95 (433)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.48 E-value=1.4e-14 Score=118.23 Aligned_cols=76 Identities=28% Similarity=0.478 Sum_probs=67.4
Q ss_pred hcc-CcccccCCCCCceEEecCCeeEeecC-Ccccccccccc--cccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195 35 SAS-LPVLPIRLSIGNTAQVQGPLTIVENI-DLRTRCANCNR--EAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110 (119)
Q Consensus 35 ~~~-~~~a~~~~~~G~~i~~~~p~~~v~~~-~~~~~C~~C~k--~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~ 110 (119)
..+ +.+|+++|++|++|+.+.|+..+... .....|.+|++ ..+.+|++|+.++|||++||+.||+.||.+|+.+..
T Consensus 14 ~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~ 93 (429)
T 3qwp_A 14 NRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKS 93 (429)
T ss_dssp SSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHh
Confidence 344 78999999999999999999987765 47889999997 479999999999999999999999999999987654
No 4
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.47 E-value=2.2e-14 Score=119.28 Aligned_cols=82 Identities=17% Similarity=0.402 Sum_probs=69.4
Q ss_pred chhhhhhcc-CcccccCCCCCceEEecCCeeEee-cCCccccccccccc--ccccCccCcccccCCHHHHHHhHHHHHHh
Q psy3195 29 DQAYVESAS-LPVLPIRLSIGNTAQVQGPLTIVE-NIDLRTRCANCNRE--AFAECSMCRQTPYCSTFCQRKDWTTHQVE 104 (119)
Q Consensus 29 ~~~~~e~~~-~~~a~~~~~~G~~i~~~~p~~~v~-~~~~~~~C~~C~k~--~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~e 104 (119)
.+...+..+ +.+|+++|++|++|+.+.|+..+. .......|.+|++. .+.+|++|+.++|||++||+.||+.|+.+
T Consensus 10 ~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~e 89 (490)
T 3n71_A 10 EVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNE 89 (490)
T ss_dssp EEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHH
Confidence 334445555 889999999999999999998554 44578899999874 79999999999999999999999999999
Q ss_pred cccccc
Q psy3195 105 CVRSDQ 110 (119)
Q Consensus 105 C~~~~~ 110 (119)
|..+..
T Consensus 90 C~~~~~ 95 (490)
T 3n71_A 90 CAAIKK 95 (490)
T ss_dssp HHHHHH
T ss_pred hHHHHh
Confidence 987654
No 5
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=99.39 E-value=1.8e-13 Score=84.79 Aligned_cols=46 Identities=39% Similarity=0.915 Sum_probs=42.6
Q ss_pred cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195 65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110 (119)
Q Consensus 65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~ 110 (119)
....|..|+++++++|++|+.++||+++||+.||+.|+.+|..++.
T Consensus 14 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~~ 59 (60)
T 2dj8_A 14 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSGPSS 59 (60)
T ss_dssp CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSSC
T ss_pred CCcccccCCCCCcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhccC
Confidence 4568999999999999999999999999999999999999998763
No 6
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=99.38 E-value=3.5e-13 Score=86.22 Aligned_cols=46 Identities=43% Similarity=0.866 Sum_probs=42.8
Q ss_pred cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195 65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110 (119)
Q Consensus 65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~ 110 (119)
..+.|..|+++++++|++|+.++||+++||++||+.|+.+|.++..
T Consensus 14 ~~~~C~~C~~~~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~ 59 (70)
T 2d8q_A 14 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ 59 (70)
T ss_dssp CCCBCSSSCCBCCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred CCCcCCCCCCcccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999998765
No 7
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=2.4e-13 Score=84.29 Aligned_cols=46 Identities=41% Similarity=0.910 Sum_probs=42.5
Q ss_pred cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccccc
Q psy3195 65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110 (119)
Q Consensus 65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~~ 110 (119)
....|..|+++++++|++|+.++||+++||+.||+.|+.+|..+..
T Consensus 12 ~~~~C~~C~~~~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~~~ 57 (60)
T 2od1_A 12 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 57 (60)
T ss_dssp CSSCCTTTSSCCCEECTTTSCCEESSHHHHHHHHHHHTTTSSCSSC
T ss_pred CCCccccCCCcccccCCCCCCeeecCHHHHHHHHHHHhHHHccccc
Confidence 4568999999999999999999999999999999999999997654
No 8
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=99.36 E-value=1.5e-13 Score=82.38 Aligned_cols=44 Identities=55% Similarity=1.155 Sum_probs=39.3
Q ss_pred cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhcccc
Q psy3195 65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS 108 (119)
Q Consensus 65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~ 108 (119)
....|..|+++++++|++|+.++|||++||..||+.|+.+|.+.
T Consensus 8 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~~~ 51 (52)
T 2jw6_A 8 KEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 51 (52)
T ss_dssp ---CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTTGGGTTTCC
T ss_pred cCCcCCCCCCCCcCcCCCCCCEeecCHHHHHHHHHHHCHHHccC
Confidence 45689999999999999999999999999999999999999864
No 9
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.00074 Score=41.13 Aligned_cols=38 Identities=32% Similarity=0.873 Sum_probs=32.8
Q ss_pred cccccccccccccCccCcccccCCHHHHHHhHHHHHHhccccc
Q psy3195 67 TRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSD 109 (119)
Q Consensus 67 ~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~~~~ 109 (119)
..|..|+..+..+|.+|. +.|||..| |+.|+..|....
T Consensus 13 ~~C~vC~~~~kY~CPrC~-~~yCSl~C----~k~Hk~~C~~~~ 50 (56)
T 2yqq_A 13 VVCVICLEKPKYRCPACR-VPYCSVVC----FRKHKEQCNPET 50 (56)
T ss_dssp CCCTTTCSCCSEECTTTC-CEESSHHH----HHHHHHHCCCCC
T ss_pred CccCcCcCCCeeeCCCCC-CCeeCHHH----HHHHHhhCcCCc
Confidence 369999998899999998 78999999 888888887644
No 10
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=93.25 E-value=0.042 Score=33.62 Aligned_cols=34 Identities=41% Similarity=0.921 Sum_probs=27.9
Q ss_pred cccccccc----cccccCccCcccccCCHHHHHHhHHHHHHhcc
Q psy3195 67 TRCANCNR----EAFAECSMCRQTPYCSTFCQRKDWTTHQVECV 106 (119)
Q Consensus 67 ~~C~~C~k----~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~ 106 (119)
..|..|.. ++..+|.+|. +.|||..|.+ .|+ +|.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k----~Hk-~Cs 49 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCN-APYCSLRCYR----THG-TCA 49 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTC-CEESSHHHHH----HHC-CGG
T ss_pred CcCcCCCCCcCCCccccCcCCC-CCccChHHHH----HHh-HhC
Confidence 47999984 5899999999 7899999965 576 565
No 11
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=60.16 E-value=6.2 Score=24.47 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=21.8
Q ss_pred ccccccccccccccCccCcccccCCHHHHHHhHH
Q psy3195 66 RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWT 99 (119)
Q Consensus 66 ~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~ 99 (119)
...|-.|++....+= .=....|||+.|+..|..
T Consensus 9 ~~~CP~Cgkp~~W~~-~~~~rPFCSeRCr~iDLg 41 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGE-ISPFRPFCSKRCQLIDLG 41 (68)
T ss_dssp EEECTTTCCEEECSS-SSSCCSSSSHHHHHHHHS
T ss_pred cCcCCCCCCcccccc-cCCCCcccCHHHHhhhHH
Confidence 346999988632110 023568999999998853
No 12
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=49.10 E-value=11 Score=21.77 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=20.1
Q ss_pred ccccccccccccccCccCcccccCCHHHHHH
Q psy3195 66 RTRCANCNREAFAECSMCRQTPYCSTFCQRK 96 (119)
Q Consensus 66 ~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~ 96 (119)
...|.+|++.-... .+-+.-.|||..|.+.
T Consensus 18 ~~~C~~CG~~i~~~-~~~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 18 LLKCEYCGKYAPAE-QFRGSKRFCSMTCAKR 47 (49)
T ss_dssp EEECTTTCCEEEGG-GCTTTSSSCSHHHHHH
T ss_pred CCcChhccCccccc-cCCCCCccCCHHHHhh
Confidence 34799999863221 1344568999999865
No 13
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=43.07 E-value=18 Score=20.37 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=18.4
Q ss_pred ccccccccccccCccCcccccCCHHHHHH
Q psy3195 68 RCANCNREAFAECSMCRQTPYCSTFCQRK 96 (119)
Q Consensus 68 ~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~ 96 (119)
.|+.|++.....=-.=+.-.+||..|.+.
T Consensus 8 ~CE~CG~~g~~~~F~~ksKRFCS~~Carr 36 (43)
T 2w0t_A 8 VCEMCGIVGTREAFFSKTKRFCSVSCSRS 36 (43)
T ss_dssp ECTTTCCEEETTTSCTTTSSSSSHHHHHH
T ss_pred hhhhhcCcchhhhhccCCcceechhhhCc
Confidence 69999985322221124567999999764
No 14
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.43 E-value=10 Score=23.49 Aligned_cols=28 Identities=32% Similarity=0.769 Sum_probs=24.0
Q ss_pred cccccccccccccccCccCcccccCCHHH
Q psy3195 65 LRTRCANCNREAFAECSMCRQTPYCSTFC 93 (119)
Q Consensus 65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~C 93 (119)
..++|.-|...+..+|.+|-.--||. .|
T Consensus 7 e~pWC~ICneDAtlrC~gCdgDLYC~-rC 34 (67)
T 2d8v_A 7 GLPWCCICNEDATLRCAGCDGDLYCA-RC 34 (67)
T ss_dssp CCSSCTTTCSCCCEEETTTTSEEECS-SH
T ss_pred CCCeeEEeCCCCeEEecCCCCceehH-HH
Confidence 56789999999999999998888995 34
No 15
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.03 E-value=33 Score=20.90 Aligned_cols=25 Identities=28% Similarity=0.789 Sum_probs=17.5
Q ss_pred ccccccccccc-c--cccCccCcccccCCH
Q psy3195 65 LRTRCANCNRE-A--FAECSMCRQTPYCST 91 (119)
Q Consensus 65 ~~~~C~~C~k~-~--l~~Cs~C~~~~YCs~ 91 (119)
...+|..|.+. . .+.| +|... ||+.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~-FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTT-FCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCE-ECTT
T ss_pred cCCcChhhCCccCccCEEe-ecCCE-eccc
Confidence 45689999985 3 3688 68754 6753
No 16
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.32 E-value=35 Score=21.33 Aligned_cols=25 Identities=40% Similarity=0.964 Sum_probs=17.5
Q ss_pred ccccccccccc-c--cccCccCcccccCCH
Q psy3195 65 LRTRCANCNRE-A--FAECSMCRQTPYCST 91 (119)
Q Consensus 65 ~~~~C~~C~k~-~--l~~Cs~C~~~~YCs~ 91 (119)
...+|..|.+. . .+.| +|... ||+.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~-FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGST-FCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCE-ECTT
T ss_pred cCccchhhcCcccccceEe-ccCCE-eccc
Confidence 45689999875 3 4788 78754 6653
No 17
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.92 E-value=32 Score=20.94 Aligned_cols=25 Identities=32% Similarity=0.913 Sum_probs=17.5
Q ss_pred ccccccccccc-c--cccCccCcccccCCH
Q psy3195 65 LRTRCANCNRE-A--FAECSMCRQTPYCST 91 (119)
Q Consensus 65 ~~~~C~~C~k~-~--l~~Cs~C~~~~YCs~ 91 (119)
...+|..|.+. . .+.| +|... ||++
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~-FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGST-FCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCE-ECSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCE-eccc
Confidence 45689999985 3 3688 78854 6653
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.10 E-value=36 Score=19.38 Aligned_cols=23 Identities=22% Similarity=0.548 Sum_probs=16.8
Q ss_pred cccccccccc-------ccccCccCccccc
Q psy3195 66 RTRCANCNRE-------AFAECSMCRQTPY 88 (119)
Q Consensus 66 ~~~C~~C~k~-------~l~~Cs~C~~~~Y 88 (119)
...|..|+.. ....|+.|..+.|
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTEW 48 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEEE
Confidence 4578888862 4778999987765
No 19
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.11 E-value=37 Score=21.11 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=15.5
Q ss_pred cccccccccccc-------cccCccCccc
Q psy3195 65 LRTRCANCNREA-------FAECSMCRQT 86 (119)
Q Consensus 65 ~~~~C~~C~k~~-------l~~Cs~C~~~ 86 (119)
....|.+|++.. .-.|..|...
T Consensus 26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRASTSIWVCGHCGYK 54 (73)
T ss_pred cCccCCCCCCceeEEEEeEEEECCCCCcE
Confidence 456799999853 4558888754
Done!