Query psy3195
Match_columns 119
No_of_seqs 144 out of 1218
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 18:44:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3195.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3195hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dana1 g.85.1.1 (A:8-54) Zinc 99.5 6.1E-15 4.4E-19 86.6 3.1 41 65-105 7-47 (47)
2 d2dj8a1 g.85.1.1 (A:8-54) Zinc 99.5 8.8E-15 6.4E-19 85.8 3.1 41 65-105 7-47 (47)
3 d2jw6a1 g.85.1.1 (A:503-540) Z 99.5 4.4E-15 3.2E-19 83.6 1.7 38 68-105 1-38 (38)
4 d1x4sa1 g.85.1.2 (A:8-53) Zinc 90.1 0.081 5.9E-06 29.4 2.1 33 68-106 9-42 (46)
5 d2d8va1 g.43.1.1 (A:8-61) Zinc 44.2 3.1 0.00022 23.3 0.6 25 67-91 2-26 (54)
6 d1vk6a4 g.41.14.1 (A:97-125) N 35.8 6.3 0.00046 19.1 0.9 21 68-88 1-28 (29)
7 d1lv3a_ g.39.1.9 (A:) Hypothet 31.7 13 0.00093 21.2 2.0 31 67-98 7-37 (65)
8 d1nc8a_ g.40.1.1 (A:) HIV nucl 24.9 11 0.00084 18.2 0.8 12 65-76 5-16 (29)
9 d2cu8a2 g.39.1.3 (A:38-70) Cys 22.5 12 0.00091 18.6 0.6 9 86-94 20-28 (33)
10 d1nz9a_ b.34.5.4 (A:) N-utiliz 19.6 19 0.0014 19.6 1.2 19 42-60 2-21 (58)
No 1
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.48 E-value=6.1e-15 Score=86.56 Aligned_cols=41 Identities=44% Similarity=0.933 Sum_probs=38.2
Q ss_pred cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhc
Q psy3195 65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105 (119)
Q Consensus 65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC 105 (119)
..++|.+|+++++++|++|+.++|||++||++||+.|+.+|
T Consensus 7 ~~~~C~~Cg~~~~~~Cs~C~~~~YCs~~CQ~~dW~~Hk~~C 47 (47)
T d2dana1 7 ERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 47 (47)
T ss_dssp CCCCCSSSCCCCCEECTTTSCSEESSHHHHHHTHHHHTTTC
T ss_pred CCCcCcCCCChhhccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence 34579999999999999999999999999999999999887
No 2
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.47 E-value=8.8e-15 Score=85.79 Aligned_cols=41 Identities=44% Similarity=1.033 Sum_probs=38.6
Q ss_pred cccccccccccccccCccCcccccCCHHHHHHhHHHHHHhc
Q psy3195 65 LRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105 (119)
Q Consensus 65 ~~~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC 105 (119)
....|..|+++++++|++|+.++|||++||+.||+.|+.+|
T Consensus 7 ~~~~C~~C~~~~~~~C~~C~~~~YCs~~CQ~~dW~~Hk~~C 47 (47)
T d2dj8a1 7 SSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 47 (47)
T ss_dssp CSCCCSSSCSCCCEECTTTSCCEESSHHHHHHTHHHHTTTS
T ss_pred CCCcCCCCCccccccCCCCCCeeeCCHHHHHHHHHHHhhhC
Confidence 45689999999999999999999999999999999999987
No 3
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.47 E-value=4.4e-15 Score=83.59 Aligned_cols=38 Identities=61% Similarity=1.348 Sum_probs=36.2
Q ss_pred ccccccccccccCccCcccccCCHHHHHHhHHHHHHhc
Q psy3195 68 RCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105 (119)
Q Consensus 68 ~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC 105 (119)
.|.+|+++++++|++|+.++|||++||+.||+.|+.+|
T Consensus 1 sC~~C~~~~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C 38 (38)
T d2jw6a1 1 SCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC 38 (38)
T ss_dssp CCSSSSSSCSEECTTTCSSEESSHHHHHHHTTTGGGTT
T ss_pred CccccCccccccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence 38899999999999999999999999999999999987
No 4
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.10 E-value=0.081 Score=29.38 Aligned_cols=33 Identities=36% Similarity=0.782 Sum_probs=25.6
Q ss_pred ccccccc-cccccCccCcccccCCHHHHHHhHHHHHHhcc
Q psy3195 68 RCANCNR-EAFAECSMCRQTPYCSTFCQRKDWTTHQVECV 106 (119)
Q Consensus 68 ~C~~C~k-~~l~~Cs~C~~~~YCs~~CQ~~dW~~Hk~eC~ 106 (119)
.|..|.. ++..+|.+|. +.|||..|- +.|+ +|.
T Consensus 9 lC~vC~~~~~KY~CP~C~-~~yCSL~Cy----K~Hk-~Cs 42 (46)
T d1x4sa1 9 FCPAGEVQPARYTCPRCN-APYCSLRCY----RTHG-TCA 42 (46)
T ss_dssp SSCTTCCEEECEECTTTC-CEESSHHHH----HHHC-CGG
T ss_pred cChhhhCccccccCCCCC-CceechHHH----hhhh-hcc
Confidence 5888876 5799999995 789999995 4565 354
No 5
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.20 E-value=3.1 Score=23.34 Aligned_cols=25 Identities=32% Similarity=0.836 Sum_probs=21.9
Q ss_pred cccccccccccccCccCcccccCCH
Q psy3195 67 TRCANCNREAFAECSMCRQTPYCST 91 (119)
Q Consensus 67 ~~C~~C~k~~l~~Cs~C~~~~YCs~ 91 (119)
++|.-|...+.++|.+|-.--||.+
T Consensus 2 PWC~ICneDA~lrC~gCdgdLyC~r 26 (54)
T d2d8va1 2 PWCCICNEDATLRCAGCDGDLYCAR 26 (54)
T ss_dssp SSCTTTCSCCCEEETTTTSEEECSS
T ss_pred CEeEEecCCCceEecCCCCceehHH
Confidence 5788999999999999999999953
No 6
>d1vk6a4 g.41.14.1 (A:97-125) NADH pyrophosphatase intervening domain {Escherichia coli [TaxId: 562]}
Probab=35.76 E-value=6.3 Score=19.13 Aligned_cols=21 Identities=38% Similarity=0.798 Sum_probs=14.5
Q ss_pred cccccccc-------ccccCccCccccc
Q psy3195 68 RCANCNRE-------AFAECSMCRQTPY 88 (119)
Q Consensus 68 ~C~~C~k~-------~l~~Cs~C~~~~Y 88 (119)
.|.+|+.+ -...|..|+-.+|
T Consensus 1 fCGYCGh~Mh~s~tEwa~LC~hC~eRYY 28 (29)
T d1vk6a4 1 YCGYCGHEMYPSKTEWAMLCSHCRERYY 28 (29)
T ss_dssp BCTTTCCBEEECSSSSCEEESSSSCEEC
T ss_pred CccccCCccccchhHHHHHHHHHHhccC
Confidence 47788763 2577888887665
No 7
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=31.68 E-value=13 Score=21.22 Aligned_cols=31 Identities=26% Similarity=0.603 Sum_probs=19.7
Q ss_pred cccccccccccccCccCcccccCCHHHHHHhH
Q psy3195 67 TRCANCNREAFAECSMCRQTPYCSTFCQRKDW 98 (119)
Q Consensus 67 ~~C~~C~k~~l~~Cs~C~~~~YCs~~CQ~~dW 98 (119)
..|-.|++.....= .=....+||+.|+..|.
T Consensus 7 v~CP~C~k~~~w~~-~~~~rPFCS~RCk~IDL 37 (65)
T d1lv3a_ 7 VNCPTCGKTVVWGE-ISPFRPFCSKRCQLIDL 37 (65)
T ss_dssp EECTTTCCEEECSS-SSSCCSSSSHHHHHHHH
T ss_pred eeCCCCCCccccCC-CCCcCCchhHhhhhccH
Confidence 35777877532110 01456799999999874
No 8
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=24.90 E-value=11 Score=18.16 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=9.1
Q ss_pred cccccccccccc
Q psy3195 65 LRTRCANCNREA 76 (119)
Q Consensus 65 ~~~~C~~C~k~~ 76 (119)
...+|.+|+++.
T Consensus 5 ~~ikCfNCGkeG 16 (29)
T d1nc8a_ 5 KVIRCWNCGKEG 16 (29)
T ss_dssp CCCBCTTTSCBS
T ss_pred ceeEeecCCccc
Confidence 345799999973
No 9
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.50 E-value=12 Score=18.58 Aligned_cols=9 Identities=33% Similarity=1.117 Sum_probs=6.1
Q ss_pred cccCCHHHH
Q psy3195 86 TPYCSTFCQ 94 (119)
Q Consensus 86 ~~YCs~~CQ 94 (119)
..||.+.|-
T Consensus 20 kPYC~~PCY 28 (33)
T d2cu8a2 20 KPFCHKPCY 28 (33)
T ss_dssp EEECTTTHH
T ss_pred CcCcCcchH
Confidence 467877774
No 10
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=19.57 E-value=19 Score=19.64 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=14.4
Q ss_pred ccCCCCCceE-EecCCeeEe
Q psy3195 42 PIRLSIGNTA-QVQGPLTIV 60 (119)
Q Consensus 42 ~~~~~~G~~i-~~~~p~~~v 60 (119)
..+|.+|+.+ ..++||+-.
T Consensus 2 ~v~F~~Gd~V~I~~GpF~g~ 21 (58)
T d1nz9a_ 2 QVAFREGDQVRVVSGPFADF 21 (58)
T ss_dssp CCSCCTTCEEEECSGGGTTC
T ss_pred cccccCCCEEEEeccCCCCC
Confidence 4689999988 567887743
Done!