RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3195
(119 letters)
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Length = 52
Score = 63.7 bits (155), Expect = 3e-15
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 60 VENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRS 108
++ C NC REA +EC+ C + YCSTFCQRKDW HQ C +S
Sbjct: 3 MDAERKEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 51
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 61.5 bits (149), Expect = 3e-14
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 62 NIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
D C NC R+A CS C YC +FCQ KDW H C ++ Q
Sbjct: 13 QGDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 61
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding
protein; NMR {Homo sapiens}
Length = 60
Score = 60.7 bits (147), Expect = 5e-14
Identities = 21/50 (42%), Positives = 25/50 (50%)
Query: 61 ENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
N D C NC R+A CS C YC +FCQ KDW H C ++ Q
Sbjct: 8 PNSDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ 57
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 60
Score = 60.0 bits (145), Expect = 1e-13
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 68 RCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C NC R+A CS C YC +FCQ KDW H C
Sbjct: 17 SCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 54
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 57.0 bits (137), Expect = 2e-12
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 66 RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQ 110
R RCA C+ EA CS C+ YC CQ K W H CV + Q
Sbjct: 15 RPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ 59
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 50.3 bits (119), Expect = 1e-08
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 57 LTIVENIDLRTRCANCNR--EAFAECSMCRQTPYCSTFCQRKDWTTHQVECVRSDQIM 112
+V + + C C + E C C+ YC CQ+ W H+ EC +
Sbjct: 40 SAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYG 97
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 43.7 bits (102), Expect = 3e-06
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 57 LTIVENIDLRTRCANCNR--EAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
++ + C C E ++C C+Q YC CQ++DW H++EC
Sbjct: 40 ACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC 90
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 39.1 bits (90), Expect = 1e-04
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 57 LTIVENIDLRTRCANCNR--EAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
V C C E CS CR YCS CQ+K W H+ EC
Sbjct: 38 AYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKREC 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.12
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 24 QNSFIDQAYV-ESASLPVLPIRLSI 47
Q S + Y +SA P L I+ ++
Sbjct: 26 QASL--KLYADDSA--PALAIKATM 46
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 26.1 bits (57), Expect = 0.87
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 66 RTRCANCNREAFAECSMCRQTPYCSTFCQRKDWTTHQVEC 105
C C + C CR PYCS C RK H+ +C
Sbjct: 12 TVVCVICLEKPKYRCPACR-VPYCSVVCFRK----HKEQC 46
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1
d.145.1.3 PDB: 1sb3_B*
Length = 324
Score = 26.2 bits (58), Expect = 3.0
Identities = 10/68 (14%), Positives = 17/68 (25%), Gaps = 8/68 (11%)
Query: 36 ASLPVLPIRLSIGNTAQVQGPLTIVENIDLRTRCANCNREAFAECSMCRQTPYCSTFCQR 95
+ P L + T+ N+ TRC + + R C +
Sbjct: 89 TTWPALAQAAESVAGPTHRAAATLGGNLCQDTRCTF-----YNQSEWWRSGNGY---CLK 140
Query: 96 KDWTTHQV 103
V
Sbjct: 141 YKGDKCHV 148
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 25.6 bits (57), Expect = 5.6
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 1 MYSVIQQNAPNAQSGDESNTSADQNSFIDQAYVESASL---PVL-----------PIRLS 46
M ++ S + T ++Q +D+A A L P PI
Sbjct: 951 MLMYLRHAIEAVPSLNNPQTFSEQK--LDEALYHGAVLRVRPKAMTVAVIIAGLLPILWG 1008
Query: 47 IGNTAQVQGPLTIV 60
G ++V +
Sbjct: 1009 TGAGSEVMSRIAAP 1022
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.128 0.384
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,554,452
Number of extensions: 74709
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 29
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)