BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3197
(459 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 159/311 (51%), Gaps = 49/311 (15%)
Query: 184 PLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLA 243
P L LP D+ D+ VIG QE +R +WE +Q TLG +V+L S G L+++
Sbjct: 42 PPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSAAHGVLYMS 101
Query: 244 VYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEEXXXX 303
+++RR LIWFCSE E + + R S +TKGA+ I FT FG+SFLF+TSH T+ +
Sbjct: 102 LFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAE 161
Query: 304 XXXXXXXXXXSLDLPKELPCKHRHK----DVTQNYDYVFWCGDLNFRVTQPRDDVIHWFK 359
+L LP+ +P + ++ DVT +D VFW GD NFR++ R V
Sbjct: 162 RLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLC 221
Query: 360 QQTFPLPPTMPMQLDCQLNKSLSEGSVFRG------------------------------ 389
Q P + +Q D QL + + +GS+F+G
Sbjct: 222 QGLVVDVPAL-LQHD-QLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTP 279
Query: 390 -------------GEIQCLHYSSVPSICSSDHKPVWGLYKCSVRPGTDAVPLNAGAFKRD 436
G+I + YSS P I +SDH+PV+GL++ VRPG D +PL AG F R+
Sbjct: 280 SYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRDNIPLAAGKFDRE 339
Query: 437 IYLEAIKKRAT 447
+YL IK+R +
Sbjct: 340 LYLLGIKRRIS 350
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 75 TNVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVF 134
+VT +D VFW GD NFR++ R V Q P + +Q D QL + + +GS+F
Sbjct: 190 ADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPAL-LQHD-QLIREMRKGSIF 247
Query: 135 RGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPD 194
+GF+E I F P++K+D G +D++ KQRTPSYTDR+L++SR + P+ SS
Sbjct: 248 KGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIK 307
Query: 195 SLDHLP 200
+ DH P
Sbjct: 308 TSDHRP 313
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 13 NALLGASELDKALPNRDIHIYVGTWNMNGQAE 44
ALLGA EL + P+R++ ++V TWNM GQ E
Sbjct: 9 GALLGADELARYFPDRNVALFVATWNMQGQKE 40
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 66 ISMYLEYERTNVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLN 125
I+ L + R N+DYV W GD N+R++ ++V+ Q + + D QLN
Sbjct: 184 IASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKL----SYLFEYD-QLN 238
Query: 126 KSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRP 180
K + G VF F E PITFPPT+K+D GT +DTS K R P++TDRIL++ P
Sbjct: 239 KQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVP 293
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 96/273 (35%), Gaps = 61/273 (22%)
Query: 199 LPDMVVIGTQESY------------PEREDWEVSIQMTL------GHSFVMLESTTLGTL 240
L D+ V+G QE +R +WE ++ L G +V L S L
Sbjct: 54 LADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGT 113
Query: 241 HLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEEX 300
L ++ + + E G KGAVAI F + F+TSHL A
Sbjct: 114 ALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN 173
Query: 301 XXXXXXXXXXXXXSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQ 360
L + R N+DYV W GD N+R++ ++V+ Q
Sbjct: 174 YDERDHDYRTIASGL--------RFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQ 225
Query: 361 -------------------QTFP----LPPTMPMQLDCQLNKSLSEGS-----------V 386
+ FP LP T P + + + S +
Sbjct: 226 GKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRI 285
Query: 387 FRGGEIQCLHYSSVPSICSSDHKPVWGLYKCSV 419
GE+ Y SVP + SDH+P++ Y+ ++
Sbjct: 286 LYRGELVPHSYQSVP-LYYSDHRPIYATYEANI 317
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 80 NYDYVFWCGDLNFRVTQ-PRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFE 138
N+D + W GDLN+R+ + + V +++ F + QL ++ +VF GF
Sbjct: 178 NHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYD-----QLKIQVAAKTVFEGFT 232
Query: 139 EGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSR 177
EG +TF PT+KYD G+ +DTS K R P++ DRIL+K +
Sbjct: 233 EGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKGK 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 107/292 (36%), Gaps = 54/292 (18%)
Query: 183 SPLELSSLFLPDSLDHLPDMVVIGTQE-----------SYPEREDWEVSIQMTL--GHSF 229
SP E L+L + + PD+ +G QE P+ E+W ++ L +
Sbjct: 18 SPKECLRLWLSNGI-QAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKY 76
Query: 230 VMLESTTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLF 289
++ L + L +YV++ + SE E KG VAI F +S
Sbjct: 77 AKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICV 136
Query: 290 VTSHLTAHEEXXXXXXXXXXXXXXSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQ 349
V SHL AH E + + P N+D + W GDLN+R+ +
Sbjct: 137 VNSHLAAHIEEYERRNQDYKDICSRMQFCQ--PDPSLPPLTISNHDVILWLGDLNYRIEE 194
Query: 350 -PRDDVIHWFKQQTFPLPPTMPMQLDCQL-NKSLSEG----------------------- 384
+ V +++ F + QL Q+ K++ EG
Sbjct: 195 LDVEKVKKLIEEKDFQMLYAYD-QLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDT 253
Query: 385 ------------SVFRGGEIQCLHYSSVPSICSSDHKPVWGLYKCSVRPGTD 424
+++G I L Y S ++ +SDHKPV ++ VR D
Sbjct: 254 SEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVND 305
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 80 NYDYVFWCGDLNFRVTQ-PRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFE 138
N+D + W GDLN+R+ + + V +++ F + QL ++ +VF GF
Sbjct: 181 NHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYD-----QLKIQVAAKTVFEGFT 235
Query: 139 EGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDH 198
EG +TF PT+KYD G+ +DTS K R P++ DRIL+K + + L S + DH
Sbjct: 236 EGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKGKNI---TQLSYQSHMALKTSDH 292
Query: 199 LP 200
P
Sbjct: 293 KP 294
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 106/288 (36%), Gaps = 54/288 (18%)
Query: 183 SPLELSSLFLPDSLDHLPDMVVIGTQE-----------SYPEREDWEVSIQMTL--GHSF 229
SP E L+L + + PD+ +G QE P+ E+W ++ L +
Sbjct: 21 SPKECLRLWLSNGI-QAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKY 79
Query: 230 VMLESTTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLF 289
++ L + L +YV++ + SE E KG VAI F +S
Sbjct: 80 AKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICV 139
Query: 290 VTSHLTAHEEXXXXXXXXXXXXXXSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQ 349
V SHL AH E + + P N+D + W GDLN+R+ +
Sbjct: 140 VNSHLAAHIEEYERRNQDYKDICSRMQFCQ--PDPSLPPLTISNHDVILWLGDLNYRIEE 197
Query: 350 -PRDDVIHWFKQQTFPLPPTMPMQLDCQL-NKSLSEG----------------------- 384
+ V +++ F + QL Q+ K++ EG
Sbjct: 198 LDVEKVKKLIEEKDFQMLYAYD-QLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDT 256
Query: 385 ------------SVFRGGEIQCLHYSSVPSICSSDHKPVWGLYKCSVR 420
+++G I L Y S ++ +SDHKPV ++ VR
Sbjct: 257 SEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVR 304
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 12/108 (11%)
Query: 76 NVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFR 135
+++ + ++FW GDLN+R+ +++++ ++ F P+ QLN + VF
Sbjct: 178 DISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFE-----PLLRVDQLNLEREKHKVFL 232
Query: 136 GFEEGPITFPPTFKYDPGTCHFDTSHKQR-------TPSYTDRILFKS 176
F E I+FPPT++Y+ G+ HKQ+ PS+ DRIL+KS
Sbjct: 233 RFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKS 280
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 18/194 (9%)
Query: 201 DMVVIGTQESYPEREDWEVSIQMTLGH----SFVMLESTTLGTLHLAVYVRRHLIWFCSE 256
D+ V GTQE+ +W ++ L + + +L + +AV V+ S
Sbjct: 49 DIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISH 108
Query: 257 PEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEEXXXXXXXXXXXXXXSLD 316
+ + KGAV + F G+SF FV HLT+ E LD
Sbjct: 109 VSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNY------LD 162
Query: 317 LPKELPCKHRHK---DVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQL 373
+ + L R D++ + ++FW GDLN+R+ +++++ ++ F P+
Sbjct: 163 ILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFE-----PLLR 217
Query: 374 DCQLNKSLSEGSVF 387
QLN + VF
Sbjct: 218 VDQLNLEREKHKVF 231
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 82 DYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFEEGP 141
D++FW GDLN RV Q M D QL K+ E +F G+ E
Sbjct: 164 DFLFWIGDLNVRVETNATHAKSLVDQNNID----GLMAFD-QLKKA-KEQKLFDGWTEPQ 217
Query: 142 ITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLP 200
+TF PT+K+ P T +D S TPS+TDR L+KS PL +SL +H P
Sbjct: 218 VTFKPTYKFKPNTDEYDLS---ATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRP 273
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 53/227 (23%)
Query: 229 FVMLESTTLGTLHLAVY-VRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSF 287
+ L++T T+ L VY + +HL + E +V + G + FT++ F
Sbjct: 73 YTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQ---KKSGGIVTSFTIYNKRF 129
Query: 288 LFVTSHLTAHEEXXXXXXXXXXXXXXSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRV 347
F TS ++ + LD K KD D++FW GDLN RV
Sbjct: 130 SFTTSRMSDED---VTSTNTKYAYDTRLDYSK--------KD--DPSDFLFWIGDLNVRV 176
Query: 348 T-----------QPRDDVIHWFKQ---------------------QTFPLPPTMPMQLDC 375
Q D + F Q T+ P + D
Sbjct: 177 ETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTD-EYDL 235
Query: 376 QLNKSLSEGSVFRGG---EIQCLHYSSVPSICSSDHKPVWGLYKCSV 419
S ++ ++++ G IQ L Y+S+ + ++H+PV ++ ++
Sbjct: 236 SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 16 LGASELDKALPNRDIHIYVGTWNMNGQAEQQSMLCLVLQSWTRHYLTEIFISMYLEYERT 75
+ AS DK L NRD + +N L + + Y E+ + +++
Sbjct: 330 ISASLTDKGLANRDQVVAAIFSYLN---------LLREKGIDKQYFDELANVLDIDFRYP 380
Query: 76 NVTQNYDYVFWCGDLNFRV 94
++T++ DYV W D RV
Sbjct: 381 SITRDMDYVEWLADTMIRV 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,195,515
Number of Sequences: 62578
Number of extensions: 596274
Number of successful extensions: 1032
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 26
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)