Query psy3197
Match_columns 459
No_of_seqs 374 out of 1180
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:46:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsw_A 72 kDa inositol polypho 100.0 2.3E-60 7.9E-65 483.9 27.3 247 198-449 56-352 (357)
2 4a9c_A Phosphatidylinositol-3, 100.0 5.6E-53 1.9E-57 420.9 19.2 231 183-421 22-315 (316)
3 3mtc_A Type II inositol-1,4,5- 100.0 8.9E-52 3E-56 411.4 20.5 229 184-421 23-305 (313)
4 1i9z_A Synaptojanin, phosphati 100.0 7.8E-48 2.7E-52 390.7 14.8 242 184-447 40-338 (347)
5 2imq_X Salivary nitrophorin; f 100.0 6.2E-38 2.1E-42 310.0 7.8 226 162-419 8-282 (282)
6 3mtc_A Type II inositol-1,4,5- 100.0 2.7E-37 9.3E-42 307.2 6.1 166 35-208 118-302 (313)
7 4a9c_A Phosphatidylinositol-3, 100.0 2.8E-36 9.7E-41 300.5 7.2 167 34-207 119-311 (316)
8 2xsw_A 72 kDa inositol polypho 100.0 1.4E-34 4.9E-39 294.1 6.4 169 33-208 124-321 (357)
9 1i9z_A Synaptojanin, phosphati 100.0 8.4E-32 2.9E-36 273.0 6.7 164 35-208 141-316 (347)
10 2imq_X Salivary nitrophorin; f 99.9 1.1E-27 3.6E-32 236.7 1.9 162 34-206 109-279 (282)
11 4gz1_A Tyrosyl-DNA phosphodies 99.2 7.6E-12 2.6E-16 117.7 4.3 156 159-345 6-161 (256)
12 3teb_A Endonuclease/exonucleas 99.1 2.1E-10 7.2E-15 109.3 10.0 128 197-345 32-179 (266)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.0 5.4E-10 1.9E-14 105.1 9.0 158 161-346 12-169 (256)
14 3l1w_A Uncharacterized protein 99.0 2.6E-09 8.9E-14 101.6 10.7 141 197-360 33-181 (257)
15 4gew_A 5'-tyrosyl-DNA phosphod 98.9 1.5E-09 5.2E-14 110.2 8.9 158 161-346 118-275 (362)
16 1zwx_A SMCL, sphingomyelinase- 98.9 4.5E-09 1.5E-13 102.4 10.8 91 240-345 101-198 (301)
17 4f1h_A Tyrosyl-DNA phosphodies 98.9 6.7E-09 2.3E-13 95.9 10.9 153 162-345 3-155 (250)
18 3g6s_A Putative endonuclease/e 98.8 1.2E-08 4.1E-13 97.7 7.8 218 162-418 3-261 (267)
19 2ddr_A Sphingomyelin phosphodi 98.7 4.9E-08 1.7E-12 95.1 11.7 93 239-346 100-199 (306)
20 3mpr_A Putative endonuclease/e 98.7 2.1E-08 7.1E-13 98.3 8.2 141 197-360 41-193 (298)
21 2jc4_A Exodeoxyribonuclease II 98.6 1.1E-07 3.8E-12 89.7 10.0 121 197-346 24-150 (256)
22 2jc5_A Exodeoxyribonuclease; h 98.6 6.8E-08 2.3E-12 91.3 8.2 148 163-346 2-153 (259)
23 2o3h_A DNA-(apurinic or apyrim 98.4 9.5E-08 3.3E-12 92.3 4.3 149 160-345 26-180 (285)
24 1vyb_A ORF2 contains A reverse 98.4 1.1E-06 3.9E-11 81.6 11.4 142 162-345 7-148 (238)
25 1wdu_A TRAS1 ORF2P; four-layer 98.4 1.1E-06 3.6E-11 83.2 10.2 137 162-345 19-157 (245)
26 1ako_A Exonuclease III; AP-end 98.3 1E-06 3.5E-11 83.6 8.9 124 197-345 24-154 (268)
27 2j63_A AP-endonuclease; base e 98.3 1.5E-06 5.2E-11 91.1 8.6 124 161-298 148-301 (467)
28 1hd7_A DNA-(apurinic or apyrim 98.3 3.4E-06 1.2E-10 83.3 10.6 149 160-345 59-213 (318)
29 2voa_A AF_EXO, XTHA, exodeoxyr 98.2 4.9E-06 1.7E-10 78.6 10.6 120 197-345 25-149 (257)
30 3i41_A Beta-hemolysin; beta to 98.2 3.6E-06 1.2E-10 83.3 9.9 96 240-353 120-222 (317)
31 4b8c_D Glucose-repressible alc 98.2 1.3E-07 4.3E-12 104.5 -1.4 75 283-362 545-620 (727)
32 3g91_A MTH0212, exodeoxyribonu 98.0 7.6E-06 2.6E-10 78.1 7.8 143 163-344 4-153 (265)
33 3ngq_A CCR4-NOT transcription 97.6 9E-05 3.1E-09 76.0 6.8 160 197-364 73-272 (398)
34 1sr4_B CDT B, cytolethal diste 97.6 6.3E-05 2.1E-09 72.7 5.3 97 239-360 95-191 (261)
35 2a40_B Deoxyribonuclease-1; WA 97.5 0.00026 8.8E-09 67.4 8.8 129 199-345 31-171 (260)
36 2ei9_A Non-LTR retrotransposon 97.5 0.00027 9.1E-09 67.2 8.3 54 272-345 77-130 (240)
37 2f1n_A CDT B, cytolethal diste 95.9 0.016 5.6E-07 55.5 7.5 64 272-353 130-193 (262)
38 1ako_A Exonuclease III; AP-end 47.1 5.7 0.0002 36.3 1.1 13 404-416 255-267 (268)
39 2a40_B Deoxyribonuclease-1; WA 38.7 7.3 0.00025 36.1 0.4 13 403-415 247-259 (260)
40 3i41_A Beta-hemolysin; beta to 35.2 11 0.00036 36.3 0.9 12 403-414 304-315 (317)
41 3pt1_A UPF0364 protein YMR027W 35.0 7.4 0.00025 40.3 -0.3 16 332-347 375-390 (471)
42 3g6s_A Putative endonuclease/e 30.8 16 0.00055 33.5 1.3 14 195-209 248-261 (267)
43 3mpr_A Putative endonuclease/e 30.2 21 0.00073 33.5 2.1 44 47-93 134-182 (298)
44 1zwx_A SMCL, sphingomyelinase- 28.0 28 0.00096 32.4 2.5 15 81-95 187-201 (301)
45 3pt1_A UPF0364 protein YMR027W 22.9 20 0.00068 37.1 0.4 16 78-93 374-389 (471)
No 1
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.3e-60 Score=483.85 Aligned_cols=247 Identities=43% Similarity=0.781 Sum_probs=221.0
Q ss_pred CCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCceeEEEEEecccccccCCCccccceeeeeeecccCceEE
Q psy3197 198 HLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVA 277 (459)
Q Consensus 198 ~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~ 277 (459)
..||+||||+||+....+.|.+.+++.|+..|.++.+.+|+|++|+||+|++++++|+.++.+.+++|+|+.+||||||+
T Consensus 56 ~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~ 135 (357)
T 2xsw_A 56 YAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALG 135 (357)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEE
Confidence 35899999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCC----CCCCCCcccCceeEEEeccccccccCChhH
Q psy3197 278 IGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPC----KHRHKDVTQNYDYVFWCGDLNFRVTQPRDD 353 (459)
Q Consensus 278 i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~----~~~~~~~~~~~d~vfw~GDLNyRi~~~~~~ 353 (459)
++|.+++++||||||||+||++++++||+||..|++.+.|++..+. .....+.+.++|+|||+|||||||+.++++
T Consensus 136 vr~~~~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~ 215 (357)
T 2xsw_A 136 ISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTV 215 (357)
T ss_dssp EEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHH
T ss_pred EEEEECCeEEEEEEEccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHH
Confidence 9999999999999999999999999999999999999999765332 112234567899999999999999999999
Q ss_pred HHHHHhc---CCCCCCCCCCCCccchhHHHHHcCCC----------------------------------ccC-------
Q psy3197 354 VIHWFKQ---QTFPLPPTMPMQLDCQLNKSLSEGSV----------------------------------FRG------- 389 (459)
Q Consensus 354 v~~~i~~---~~~~~~~~~~ll~~DQL~~~~~~g~~----------------------------------~~~------- 389 (459)
+.++|++ ++++. |+.+|||+.++++|.+ |||
T Consensus 216 v~~~i~~~~~~~~~~-----Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydts~k~R~PaWcDRIL~~~~ 290 (357)
T 2xsw_A 216 VDALLCQGLVVDVPA-----LLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSR 290 (357)
T ss_dssp HHHHHC---CCCHHH-----HHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEEES
T ss_pred HHHHHhhcchhhHHH-----HHhcChhHHHHhccccccCccccCCCCCCCccccCCCccccccCCCCCCcccceEEEecC
Confidence 9988864 45555 6678999999887665 444
Q ss_pred --CcceEeeccccCCCCccCCcceeceEEeEEcCCCCcccCCcccchhHHHHHHHHHHhhhc
Q psy3197 390 --GEIQCLHYSSVPSICSSDHKPVWGLYKCSVRPGTDAVPLNAGAFKRDIYLEAIKKRATLY 449 (459)
Q Consensus 390 --~~i~~~~Y~s~~~i~~SDHkPV~a~f~v~~~~~~~~~p~~~~~~~~~~y~~~~~~~~~~~ 449 (459)
..++++.|++++++++||||||+|.|.+.+++..+.||+.++.+.|++|+++++||++-.
T Consensus 291 ~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~~~ipl~~~~f~~~~~~~~~~~~~~~~ 352 (357)
T 2xsw_A 291 HKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRDNIPLAAGKFDRELYLLGIKRRISAH 352 (357)
T ss_dssp STTSEEEEEEEECTTCCSSSSCCEEEEEEEECCCCCSCSCBCSSCCCHHHHHHHHHHHHHC-
T ss_pred CCCceEEEEeEecccccCCCcCCceeEEEEEEecCCccccccccccCHHHHHHHHHhhhhcc
Confidence 247889999999999999999999999999999999999999999999999999999854
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=5.6e-53 Score=420.86 Aligned_cols=231 Identities=26% Similarity=0.420 Sum_probs=196.4
Q ss_pred CCCccccccCCCCC---------CCCCceeeeccCCCCCchhHHHHHHHhhcC----CceeEEEEeecCceeEEEEEecc
Q psy3197 183 SPLELSSLFLPDSL---------DHLPDMVVIGTQESYPEREDWEVSIQMTLG----HSFVMLESTTLGTLHLAVYVRRH 249 (459)
Q Consensus 183 s~~dl~s~ll~~~~---------d~~pd~~vig~QE~~~~~~~w~~~l~~~L~----~~y~~v~s~~l~gi~l~Vfvr~~ 249 (459)
++.++.+|+.+... ...||+|||||||+....++|++.|+++|+ ..|.++.+.+|+|++|+||+|++
T Consensus 22 p~~~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~ 101 (316)
T 4a9c_A 22 PPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPE 101 (316)
T ss_dssp CCSCCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGG
T ss_pred CCcchhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHH
Confidence 45678888876421 235899999999998888999999999986 47999999999999999999999
Q ss_pred cccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q psy3197 250 LIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKD 329 (459)
Q Consensus 250 ~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~ 329 (459)
+.++|+.++.+.++||+||++||||||+|+|.+++++||||||||+||++++++||+||.+|++.+.|++... ...+
T Consensus 102 ~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~---~~~d 178 (316)
T 4a9c_A 102 HENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQL---NAFD 178 (316)
T ss_dssp GGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC----------CC
T ss_pred HhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCCc---Cccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864311 1234
Q ss_pred cccCceeEEEeccccccccCChhHHHHHHhcCCCCCCCCCCCCccchhHHHHHcCCC-----------------------
Q psy3197 330 VTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSV----------------------- 386 (459)
Q Consensus 330 ~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~~~~~~ll~~DQL~~~~~~g~~----------------------- 386 (459)
...+||||||+|||||||+++.++++++|++++|+. |+.+|||+.++++|.+
T Consensus 179 ~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~-----Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~ 253 (316)
T 4a9c_A 179 ISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEP-----LLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRD 253 (316)
T ss_dssp TTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHH-----HHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSS
T ss_pred cCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHH-----HhccChHHHHHhcCCcccccccCCcccCCCccccCCCcc
Confidence 566799999999999999999999999999999988 7788999999987766
Q ss_pred ------------------ccCC---------cceEeeccccCCCCccCCcceeceEEeEEcC
Q psy3197 387 ------------------FRGG---------EIQCLHYSSVPSICSSDHKPVWGLYKCSVRP 421 (459)
Q Consensus 387 ------------------~~~~---------~i~~~~Y~s~~~i~~SDHkPV~a~f~v~~~~ 421 (459)
|||+ .++++.|+|.+++++||||||+|.|.+.|++
T Consensus 254 ~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~~ 315 (316)
T 4a9c_A 254 TYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVTS 315 (316)
T ss_dssp CBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECCC
T ss_pred cccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEEe
Confidence 2321 3678999999999999999999999999874
No 3
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=8.9e-52 Score=411.37 Aligned_cols=229 Identities=26% Similarity=0.369 Sum_probs=202.3
Q ss_pred CCccccccCCCCCCCCCceeeeccCCCCC-----------chhHHHHHHHhhcCC--ceeEEEEeecCceeEEEEEeccc
Q psy3197 184 PLELSSLFLPDSLDHLPDMVVIGTQESYP-----------EREDWEVSIQMTLGH--SFVMLESTTLGTLHLAVYVRRHL 250 (459)
Q Consensus 184 ~~dl~s~ll~~~~d~~pd~~vig~QE~~~-----------~~~~w~~~l~~~L~~--~y~~v~s~~l~gi~l~Vfvr~~~ 250 (459)
+.++.+|+.+. ...||+||||+||+.. ..+.|++.++++|++ +|.++.+.+|+|+.|+||+|+++
T Consensus 23 ~~~l~~wL~~~--~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~ 100 (313)
T 3mtc_A 23 KECLRLWLSNG--IQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEH 100 (313)
T ss_dssp CSCTHHHHSSS--CCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEEEEETTEEEEEEEEGGG
T ss_pred chhHHHHhccc--CCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEEEechhhhhhhhhhhhhh
Confidence 45788888753 3579999999999842 246799999999975 69999999999999999999999
Q ss_pred ccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCc
Q psy3197 251 IWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDV 330 (459)
Q Consensus 251 ~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~ 330 (459)
.++|+.++.++++||+||.+||||||++||.+++++|||||||||||++++++||+||..|++++.|+...+.. ....
T Consensus 101 ~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~--~~~~ 178 (313)
T 3mtc_A 101 AAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSL--PPLT 178 (313)
T ss_dssp GGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSS--CCBC
T ss_pred hhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCcc--CCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997643321 1223
Q ss_pred ccCceeEEEecccccccc-CChhHHHHHHhcCCCCCCCCCCCCccchhHHHHHcCCC-----------------------
Q psy3197 331 TQNYDYVFWCGDLNFRVT-QPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSV----------------------- 386 (459)
Q Consensus 331 ~~~~d~vfw~GDLNyRi~-~~~~~v~~~i~~~~~~~~~~~~ll~~DQL~~~~~~g~~----------------------- 386 (459)
+.+||+|||||||||||+ ++.++++++|++++|+. |+.+|||+.++++|.+
T Consensus 179 i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~-----Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ 253 (313)
T 3mtc_A 179 ISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQM-----LYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDD 253 (313)
T ss_dssp TTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHH-----HHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSS
T ss_pred ccCCceEEEeccccccccCCCHHHHHHHHhcCCHHH-----HHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcc
Confidence 468999999999999996 88999999999999988 7788999999988776
Q ss_pred -----------ccC------CcceEeeccccCCCCccCCcceeceEEeEEcC
Q psy3197 387 -----------FRG------GEIQCLHYSSVPSICSSDHKPVWGLYKCSVRP 421 (459)
Q Consensus 387 -----------~~~------~~i~~~~Y~s~~~i~~SDHkPV~a~f~v~~~~ 421 (459)
||| ..++++.|+|++++++||||||+|.|.+.++.
T Consensus 254 ydts~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~ 305 (313)
T 3mtc_A 254 WDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRV 305 (313)
T ss_dssp BCCSTTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEE
T ss_pred cccccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEE
Confidence 444 35789999999999999999999999999875
No 4
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=7.8e-48 Score=390.69 Aligned_cols=242 Identities=28% Similarity=0.442 Sum_probs=202.6
Q ss_pred CCccccccCCCCCCCCCceeeeccCCCCC------------chhHHHHHHHhhcC------CceeEEEEeecCceeEEEE
Q psy3197 184 PLELSSLFLPDSLDHLPDMVVIGTQESYP------------EREDWEVSIQMTLG------HSFVMLESTTLGTLHLAVY 245 (459)
Q Consensus 184 ~~dl~s~ll~~~~d~~pd~~vig~QE~~~------------~~~~w~~~l~~~L~------~~y~~v~s~~l~gi~l~Vf 245 (459)
+.++.+|+.+.+ +..||+|||||||+++ ..+.|++.+.++|+ .+|.++.+.+|+|++|+||
T Consensus 40 ~~~l~~~L~~~~-~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vf 118 (347)
T 1i9z_A 40 TTKLENWLFPEN-TPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIF 118 (347)
T ss_dssp CSCCHHHHSCSS-SCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEE
T ss_pred chhHHHHhcccc-CCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEE
Confidence 456888887653 4689999999999964 13579999999984 6899999999999999999
Q ss_pred EecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy3197 246 VRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKH 325 (459)
Q Consensus 246 vr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~ 325 (459)
+|+++.+.|+.++.+.+++|+||.+||||||+++|.++++++|||||||+||+++.++|++|++.|++.+.|+...
T Consensus 119 vr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~---- 194 (347)
T 1i9z_A 119 CKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGR---- 194 (347)
T ss_dssp EEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGC----
T ss_pred EehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCccc----
Confidence 9999999999999888999999999999999999999999999999999999999999999999999999886421
Q ss_pred CCCCcccCceeEEEeccccccccCChhHHHHHHhcCCCCCCCCCCCCccchhHHHHHcCCC-------------------
Q psy3197 326 RHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSV------------------- 386 (459)
Q Consensus 326 ~~~~~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~~~~~~ll~~DQL~~~~~~g~~------------------- 386 (459)
.+.+||++|||||||||++++.+++.++|+++++.. |+.+|||+.++++|.+
T Consensus 195 ----~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~-----Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~ 265 (347)
T 1i9z_A 195 ----SIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSY-----LFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDI 265 (347)
T ss_dssp ----CTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHH-----HHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCT
T ss_pred ----ccccCccEEEecccccccCCCHHHHHHHHhhccHHH-----hhcccHHHHHHhcCCcccccccCCCCCCCCcccCC
Confidence 235789999999999999999999999999999887 7778999999877765
Q ss_pred ---------------ccCC-----cceEeeccccCCCCccCCcceeceEEeEEcCCCCcccCCcccchhHHHHHHHHHHh
Q psy3197 387 ---------------FRGG-----EIQCLHYSSVPSICSSDHKPVWGLYKCSVRPGTDAVPLNAGAFKRDIYLEAIKKRA 446 (459)
Q Consensus 387 ---------------~~~~-----~i~~~~Y~s~~~i~~SDHkPV~a~f~v~~~~~~~~~p~~~~~~~~~~y~~~~~~~~ 446 (459)
|||+ .++++.|++.+ +++|||+||+|.|.+.++...+. .+++++.+..+++.
T Consensus 266 ~~~~yd~s~k~R~PsWcDRIL~~~~l~~~~Y~~~~-~~~SDH~PV~a~f~~~v~~~~~~-------~~~~~~~~~~~~~~ 337 (347)
T 1i9z_A 266 GTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVP-LYYSDHRPIYATYEANIVKVDRE-------KKKILFEELYNQRK 337 (347)
T ss_dssp TSSCBCCSTTCCCCBCCEEEEEESSCEEEEEEECC-CCSSSBCCEEEEEEEEEEEECHH-------HHHHHHHHHHHHHH
T ss_pred CCccccccccccCCcccceEEEeCCEEEEEEEecC-ccCCCcCCceeEEEEEEecCCHH-------HHHHHHHHHHHHHH
Confidence 3332 46899999998 99999999999999998864433 45555555444444
Q ss_pred h
Q psy3197 447 T 447 (459)
Q Consensus 447 ~ 447 (459)
.
T Consensus 338 ~ 338 (347)
T 1i9z_A 338 Q 338 (347)
T ss_dssp H
T ss_pred h
Confidence 3
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=6.2e-38 Score=310.01 Aligned_cols=226 Identities=18% Similarity=0.243 Sum_probs=184.2
Q ss_pred cccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCc------hhHHHHHHHhhcC-CceeEEEE
Q psy3197 162 KQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPE------REDWEVSIQMTLG-HSFVMLES 234 (459)
Q Consensus 162 k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~------~~~w~~~l~~~L~-~~y~~v~s 234 (459)
+.++.+||.+-.. .+.++.+|+... .+..||++||||||+... ...|.+.+++.|+ ..|..+.+
T Consensus 8 ~i~V~T~Nv~~~~--------~~~~l~~wl~~~-~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~ 78 (282)
T 2imq_X 8 SVHTVSWNSGHER--------APTNLEELLGLN-SGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKN 78 (282)
T ss_dssp EEEEEEEEEETCC--------CCSCCHHHHTCT-TSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEEEEeCCCCc--------CchhHHHHhccc-ccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEe
Confidence 4678888876321 124566776432 257899999999999754 4579999999987 47999988
Q ss_pred --eecCceeEEEEEecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHH
Q psy3197 235 --TTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIV 312 (459)
Q Consensus 235 --~~l~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~ 312 (459)
.+++|+.++||+|+++.+.++.+.. +|+.+.+||||||+++|.+.++++||||+||+|++++.++|++|++.|+
T Consensus 79 ~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~~~R~~~~~~I~ 154 (282)
T 2imq_X 79 TITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRL 154 (282)
T ss_dssp EECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSSSSCCGGG
T ss_pred ccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCchHHHHHHHHHHHH
Confidence 7888999999999999887765432 4666789999999999999999999999999999888899999999998
Q ss_pred HhcCCCCCCCCCCCCCCcccCceeEEEeccccccccCChhHHHHHHhcCCCCCCCCCCCCccchhHHHHHcCCC------
Q psy3197 313 KSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSV------ 386 (459)
Q Consensus 313 ~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~~~~~~ll~~DQL~~~~~~g~~------ 386 (459)
+.+.. ..++|+||||||||||++.+.+++.++|+++.+.. |+.+|||..+++ |.+
T Consensus 155 ~~~~~-------------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~-----l~~~DqL~~~~~-~~~f~~f~e 215 (282)
T 2imq_X 155 DYSKK-------------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDG-----LMAFDQLKKAKE-QKLFDGWTE 215 (282)
T ss_dssp CTTSS-------------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHH-----HHTTBTHHHHHH-TTSSTTCBC
T ss_pred Hhhhc-------------cCccceEEEecccccccCCCHHHHHHHHhhccHHH-----HhhhhHHHHhhc-ccccccccc
Confidence 87632 13468899999999999999999999999988877 667799998866 432
Q ss_pred -------------------------ccC---------CcceEeeccccCCCCccCCcceeceEEeEE
Q psy3197 387 -------------------------FRG---------GEIQCLHYSSVPSICSSDHKPVWGLYKCSV 419 (459)
Q Consensus 387 -------------------------~~~---------~~i~~~~Y~s~~~i~~SDHkPV~a~f~v~~ 419 (459)
||| ..++++.|.+++++..|||+||+|.|.+.+
T Consensus 216 ~~i~f~PTYk~~~~~~~y~~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 216 PQVTFKPTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp CCCCSCCCBCBCTTSSCBCTTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred CCcCCCCCccccCCCccccccCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 444 247899999999999999999999999763
No 6
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=2.7e-37 Score=307.24 Aligned_cols=166 Identities=30% Similarity=0.526 Sum_probs=133.8
Q ss_pred EEeecCCcccc-----cceeeeehhhhhhhH--H-HHH--H--HHhhhccccc------ccccCcceEEEecccccccc-
Q psy3197 35 GTWNMNGQAEQ-----QSMLCLVLQSWTRHY--L-TEI--F--ISMYLEYERT------NVTQNYDYVFWCGDLNFRVT- 95 (459)
Q Consensus 35 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~-~~~--~--~~~~~~~~~~------~~~~~~d~vfw~GDlNfRi~- 95 (459)
|+|||||++.. .+.+|||+|||+++. + +|. + +-..+.|.+. ..+.++|+|||||||||||+
T Consensus 118 g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~ 197 (313)
T 3mtc_A 118 GRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEE 197 (313)
T ss_dssp GTSTTSEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCS
T ss_pred ccccCCceEEEEEEECCcEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccC
Confidence 56899999985 499999999999743 2 331 1 1233444332 24678999999999999997
Q ss_pred CChhhHHHHHhcCCCCCCCCCCCccchhhhhhhhcCCCCCCCcccCcccCCeeeecCCCCcccccccccCcCcchhhhhh
Q psy3197 96 QPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFK 175 (459)
Q Consensus 96 ~~~~~~~~~i~~~~~~~~~~~~l~~~DqL~~~~~~~~~f~~f~E~~I~F~PTyK~~~~~~~~~~~~k~R~psw~dRil~~ 175 (459)
++.+++.+++++++++ .|+.+|||+.+++++.+|.||+|+||+|+|||||+++++.|++++|+|+|||||||||+
T Consensus 198 ~~~~~v~~~i~~~~~~-----~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts~k~R~PsWcDRIL~~ 272 (313)
T 3mtc_A 198 LDVEKVKKLIEEKDFQ-----MLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWK 272 (313)
T ss_dssp SCHHHHHHHHHTTCHH-----HHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEE
T ss_pred CCHHHHHHHHhcCCHH-----HHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccccCEecccccceEEEe
Confidence 7888999999988875 37889999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCccccccCCCCCCCCCceeeeccC
Q psy3197 176 SRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQ 208 (459)
Q Consensus 176 ~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~Q 208 (459)
+.. .....|.+......+||+|+..++-++
T Consensus 273 ~~~---i~~~~Y~s~~~~~~SDHrPV~a~f~~~ 302 (313)
T 3mtc_A 273 GKN---ITQLSYQSHMALKTSDHKPVSSVFDIG 302 (313)
T ss_dssp ESS---EEEEEEEECTTCCSSSSCCEEEEEEEE
T ss_pred cCC---eEEEeeeeccCccCCCccCeEEEEEEE
Confidence 753 233456555444568999998877543
No 7
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=2.8e-36 Score=300.53 Aligned_cols=167 Identities=25% Similarity=0.392 Sum_probs=126.1
Q ss_pred EEEeecCCcccc-----cceeeeehhhhhhhH---HHH------HHHHhhhccc-----ccccccCcceEEEeccccccc
Q psy3197 34 VGTWNMNGQAEQ-----QSMLCLVLQSWTRHY---LTE------IFISMYLEYE-----RTNVTQNYDYVFWCGDLNFRV 94 (459)
Q Consensus 34 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~-----~~~~~~~~d~vfw~GDlNfRi 94 (459)
.|+|||||++.. .+.+|||+|||+++. .+| |.. .+.+. .-+.+.++|||||||||||||
T Consensus 119 ~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~--~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 119 ANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILR--LLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp -----CEEEEEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHH--HCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred eEecCCCceEEEEEEECCcEEEEEEeccccCchHHHHHHHHHHHHHH--hCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 467899999984 499999999999744 233 232 23332 224567899999999999999
Q ss_pred cCChhhHHHHHhcCCCCCCCCCCCccchhhhhhhhcCCCCCCCcccCcccCCeeeecCCCC-ccc------ccccccCcC
Q psy3197 95 TQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFEEGPITFPPTFKYDPGTC-HFD------TSHKQRTPS 167 (459)
Q Consensus 95 ~~~~~~~~~~i~~~~~~~~~~~~l~~~DqL~~~~~~~~~f~~f~E~~I~F~PTyK~~~~~~-~~~------~~~k~R~ps 167 (459)
+++.+++++++++++++ .|+.+|||+.+++++.+|.||+|++|+|+|||||+.++. .|+ ++.|+|+||
T Consensus 197 ~~~~~~v~~~i~~~~~~-----~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~Pa 271 (316)
T 4a9c_A 197 DMDIQEILNYISRKEFE-----PLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPS 271 (316)
T ss_dssp SSCHHHHHHHHHTTCCH-----HHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCB
T ss_pred CCCHHHHHHHHhcccHH-----HHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcccccccccccccccccCCc
Confidence 99999999999998886 378899999999999999999999999999999999985 453 455789999
Q ss_pred cchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeecc
Q psy3197 168 YTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGT 207 (459)
Q Consensus 168 w~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~ 207 (459)
|||||||++..........|.+......+||+|+..++-+
T Consensus 272 WcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v 311 (316)
T 4a9c_A 272 WCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEV 311 (316)
T ss_dssp CCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEE
T ss_pred ccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEE
Confidence 9999999876443333445655544566899999887754
No 8
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=294.10 Aligned_cols=169 Identities=32% Similarity=0.512 Sum_probs=133.0
Q ss_pred EEEEeecCCcccc-----cceeeeehhhhhhhH---HHH------HHHHhhhcccc------------cccccCcceEEE
Q psy3197 33 YVGTWNMNGQAEQ-----QSMLCLVLQSWTRHY---LTE------IFISMYLEYER------------TNVTQNYDYVFW 86 (459)
Q Consensus 33 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~------------~~~~~~~d~vfw 86 (459)
+.|+|||||++.. .+.+|||+|||+++. .+| |.+ .+.+.+ .+++.++|+|||
T Consensus 124 ~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~--~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw 201 (357)
T 2xsw_A 124 IVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQ--ALVLPRNVPDTNPYRSSAADVTTRFDEVFW 201 (357)
T ss_dssp EEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHH--HCCCCSSSCCSSGGGCBTTBGGGSSSEEEE
T ss_pred cccccccccEEEEEEEECCeEEEEEEEccCCCCchHHHHHHHHHHHHH--HhcccccccccccccccccccccccceEEE
Confidence 4566899999885 389999999999753 233 332 233322 245678999999
Q ss_pred eccccccccCChhhHHHHHhc---CCCCCCCCCCCccchhhhhhhhcCCCCCCCcccCcccCCeeeecCCCCcccccccc
Q psy3197 87 CGDLNFRVTQPRDDVIHWFKQ---QTFPLPPTMPMQLDCQLNKSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQ 163 (459)
Q Consensus 87 ~GDlNfRi~~~~~~~~~~i~~---~~~~~~~~~~l~~~DqL~~~~~~~~~f~~f~E~~I~F~PTyK~~~~~~~~~~~~k~ 163 (459)
+|||||||+++.+++.++++. ++++ .|+.+|||..+++++.+|.||+|++|+|+|||||+.+++.|+++.|+
T Consensus 202 ~GDlNyRi~~~~~~v~~~i~~~~~~~~~-----~Ll~~DQL~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydts~k~ 276 (357)
T 2xsw_A 202 FGDFNFRLSGGRTVVDALLCQGLVVDVP-----ALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQ 276 (357)
T ss_dssp EEECCCCBSSCHHHHHHHHC---CCCHH-----HHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCCSTTC
T ss_pred ecccCcccccchHHHHHHHhhcchhhHH-----HHHhcChhHHHHhccccccCccccCCCCCCCccccCCCccccccCCC
Confidence 999999999998888888863 2332 47789999999999999999999999999999999999999999999
Q ss_pred cCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccC
Q psy3197 164 RTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQ 208 (459)
Q Consensus 164 R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~Q 208 (459)
|+|||||||||++..........|.+......+||.|+...+-+.
T Consensus 277 R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~ 321 (357)
T 2xsw_A 277 RTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVK 321 (357)
T ss_dssp CCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEEE
T ss_pred CCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEEE
Confidence 999999999998764433344556654434568999998887543
No 9
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.97 E-value=8.4e-32 Score=273.04 Aligned_cols=164 Identities=34% Similarity=0.519 Sum_probs=131.4
Q ss_pred EEeecCCccccc-----ceeeeehhhhhhhH--H-HHH----HHHhhhcccccccccCcceEEEeccccccccCChhhHH
Q psy3197 35 GTWNMNGQAEQQ-----SMLCLVLQSWTRHY--L-TEI----FISMYLEYERTNVTQNYDYVFWCGDLNFRVTQPRDDVI 102 (459)
Q Consensus 35 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~-~~~----~~~~~~~~~~~~~~~~~d~vfw~GDlNfRi~~~~~~~~ 102 (459)
|.||+||++..+ +.+|||+|||+++. . +|. -+...+.+.+...+.++|++|||||||||++++.+.+.
T Consensus 141 g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi~~~~~~v~ 220 (347)
T 1i9z_A 141 GVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVV 220 (347)
T ss_dssp ----CCEEEEEEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHH
T ss_pred CccCCCceEEEEEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEecccccccCCCHHHHH
Confidence 358899998853 88999999999754 2 331 12345566666667889999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCccchhhhhhhhcCCCCCCCcccCcccCCeeeecCCCCcccccccccCcCcchhhhhhccCCCCC
Q psy3197 103 HWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPG 182 (459)
Q Consensus 103 ~~i~~~~~~~~~~~~l~~~DqL~~~~~~~~~f~~f~E~~I~F~PTyK~~~~~~~~~~~~k~R~psw~dRil~~~~~~~~~ 182 (459)
++++++++. .|+.+|||..+++++.+|.||.|++|+|+|||||+.+++.|++++|.|+|||||||||++ ..
T Consensus 221 ~~i~~~~~~-----~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~s~k~R~PsWcDRIL~~~----~l 291 (347)
T 1i9z_A 221 PCIAQGKLS-----YLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRG----EL 291 (347)
T ss_dssp HHHHTTCHH-----HHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCCSTTCCCCBCCEEEEEES----SC
T ss_pred HHHhhccHH-----HhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccccccccCCcccceEEEeC----CE
Confidence 999988775 377899999999999999999999999999999999999999999999999999999976 22
Q ss_pred CCCccccccCCCCCCCCCceeeeccC
Q psy3197 183 SPLELSSLFLPDSLDHLPDMVVIGTQ 208 (459)
Q Consensus 183 s~~dl~s~ll~~~~d~~pd~~vig~Q 208 (459)
....|.+.. ...+||.|+...+.+.
T Consensus 292 ~~~~Y~~~~-~~~SDH~PV~a~f~~~ 316 (347)
T 1i9z_A 292 VPHSYQSVP-LYYSDHRPIYATYEAN 316 (347)
T ss_dssp EEEEEEECC-CCSSSBCCEEEEEEEE
T ss_pred EEEEEEecC-ccCCCcCCceeEEEEE
Confidence 233454443 3558999998777544
No 10
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.93 E-value=1.1e-27 Score=236.69 Aligned_cols=162 Identities=27% Similarity=0.424 Sum_probs=120.9
Q ss_pred EEEeecCCccccc-----ceeeeehhhhhhhH---HHHHHH-HhhhcccccccccCcceEEEeccccccccCChhhHHHH
Q psy3197 34 VGTWNMNGQAEQQ-----SMLCLVLQSWTRHY---LTEIFI-SMYLEYERTNVTQNYDYVFWCGDLNFRVTQPRDDVIHW 104 (459)
Q Consensus 34 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~d~vfw~GDlNfRi~~~~~~~~~~ 104 (459)
.|.|+++|+...+ +.+||+|+||+++. -+|.-+ ..-++. ...+.++|+|||+||||||++.+.+++.++
T Consensus 109 ~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~--~~~~~~~~~vi~~GDfN~r~~~~~~~~~~~ 186 (282)
T 2imq_X 109 VDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDY--SKKDDPSDFLFWIGDLNVRVETNATHAKSL 186 (282)
T ss_dssp CSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTSSSSSCCGGGCT--TSSSSCCSEEEEEEECSCCBCSCHHHHHHH
T ss_pred cccccCCceEEEEEEECCEEEEEEEECCCCCCchHHHHHHHHHHHHHh--hhccCccceEEEecccccccCCCHHHHHHH
Confidence 4567888887753 78999999999862 122100 000111 111457899999999999999998899999
Q ss_pred HhcCCCCCCCCCCCccchhhhhhhhcCCCCCCCcccCcccCCeeeecCCCCcccccccccCcCcchhhhhhccCCCCCCC
Q psy3197 105 FKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPGSP 184 (459)
Q Consensus 105 i~~~~~~~~~~~~l~~~DqL~~~~~~~~~f~~f~E~~I~F~PTyK~~~~~~~~~~~~k~R~psw~dRil~~~~~~~~~s~ 184 (459)
++++.+. .|+.+|||..+++ +.+|.+|.|++|+|+|||||+.+++.|++ .|+||||||||+++........
T Consensus 187 i~~~~~~-----~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~~---~R~Psw~DrIl~~~~~~~~~~~ 257 (282)
T 2imq_X 187 VDQNNID-----GLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYDL---SATPSWTDRALYKSGTGKTIQP 257 (282)
T ss_dssp HHTTCHH-----HHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBCT---TSCCBCCEEEEEECSSSCCEEE
T ss_pred HhhccHH-----HHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCCccccc---cCCccccceEEEecCCCCceEe
Confidence 9877664 3677899999999 99999999999999999999999988875 6999999999998643333333
Q ss_pred CccccccCCCCCCCCCceeeec
Q psy3197 185 LELSSLFLPDSLDHLPDMVVIG 206 (459)
Q Consensus 185 ~dl~s~ll~~~~d~~pd~~vig 206 (459)
..|.+......+||.|+...+.
T Consensus 258 ~~y~~~~~~~~SDH~PV~a~f~ 279 (282)
T 2imq_X 258 LSYNSLTNYKQTEHRPVLAKFR 279 (282)
T ss_dssp EEEEECTTCCSSSSCCEEEEEE
T ss_pred eEecCCCCCCCCCcCCeEEEEE
Confidence 4444432234579999987764
No 11
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.19 E-value=7.6e-12 Score=117.72 Aligned_cols=156 Identities=17% Similarity=0.240 Sum_probs=92.9
Q ss_pred ccccccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecC
Q psy3197 159 TSHKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLG 238 (459)
Q Consensus 159 ~~~k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~ 238 (459)
.....|+.|||.+-+.... .......+.+++. ...|| |||+||+.. .+...+.+.++. |... .....
T Consensus 6 ~~~~l~v~swNi~g~~~~~--~~~r~~~i~~~i~----~~~pD--Ii~LQEv~~---~~~~~l~~~~~~-~~~~-~~~~~ 72 (256)
T 4gz1_A 6 DSSTISFITWNIDGLDGCN--LPERARGVCSCLA----LYSPD--VVFLQEVIP---PYCAYLKKRAAS-YTII-TGNEE 72 (256)
T ss_dssp GGGEEEEEEEECCTTCCTT--HHHHHHHHHHHHH----HHCCS--EEEEEEECH---HHHHHHHHHCTT-EEEE-ESCSS
T ss_pred CCCcEEEEEEEcCCCcCcC--HHHHHHHHHHHHH----HcCCC--EEEEEcCCH---HHHHHHHhhccc-ccee-ecccc
Confidence 3445899999975332100 0000112233333 45688 789999743 334455555543 3222 22334
Q ss_pred ceeEEEEEecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCC
Q psy3197 239 TLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLP 318 (459)
Q Consensus 239 gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~ 318 (459)
+.+.+++.+++.....+ ............++.+.+.+...+..+.++|+||.+.....+.|.+++..|.+.+.-.
T Consensus 73 ~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~ 147 (256)
T 4gz1_A 73 GYFTAILLKKGRVKFKS-----QEIIPFPNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREHSAERIRQLKTVLGKMQEA 147 (256)
T ss_dssp SSEEEEEEETTTEEEEE-----EEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHS
T ss_pred CCceEEEEEecccccee-----cccccCCcccccceEEEEEEEeCCEEEEEEeecccccccchhhhhHHHHHHhhhhhhc
Confidence 45566777665433221 1111112233457788999999999999999999998888888999999988876210
Q ss_pred CCCCCCCCCCCcccCceeEEEeccccc
Q psy3197 319 KELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
.....+|++||||.
T Consensus 148 -------------~~~~pvIl~GDfN~ 161 (256)
T 4gz1_A 148 -------------PDSTTVIFAGDTNL 161 (256)
T ss_dssp -------------CTTSEEEEEEECCC
T ss_pred -------------cCcceEEEeCccCC
Confidence 01134889999994
No 12
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.10 E-value=2.1e-10 Score=109.25 Aligned_cols=128 Identities=17% Similarity=0.134 Sum_probs=79.2
Q ss_pred CCCCceeeeccCCCCCch-----------hHHHHHHHhhc----CCceeEEEE-----eecCceeEEEEEecccccccCC
Q psy3197 197 DHLPDMVVIGTQESYPER-----------EDWEVSIQMTL----GHSFVMLES-----TTLGTLHLAVYVRRHLIWFCSE 256 (459)
Q Consensus 197 d~~pd~~vig~QE~~~~~-----------~~w~~~l~~~L----~~~y~~v~s-----~~l~gi~l~Vfvr~~~~~~is~ 256 (459)
...|| |||+||+.... +.|...+.+.| +..|..+.. ....+.+++|++|.++......
T Consensus 32 ~~~~D--Ii~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ailsr~~~~~~~~~ 109 (266)
T 3teb_A 32 EKQYD--VIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVITRHKIKAEDEF 109 (266)
T ss_dssp HHTCS--EEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEEEEESSCCSEEEEE
T ss_pred hcCCC--EEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEEEEECceecCceeE
Confidence 34678 78999984321 12333333333 234554311 1233458889988776432110
Q ss_pred CccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCcee
Q psy3197 257 PEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDY 336 (459)
Q Consensus 257 v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~ 336 (459)
.... ++-...+..+|++.+++.+.+..+.++|+||.+.....+.|..++..|.+.+.- ...
T Consensus 110 ~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~----------------~~~ 170 (266)
T 3teb_A 110 YCTF---AQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQN----------------SNL 170 (266)
T ss_dssp ECSS---CCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCS----------------CCE
T ss_pred EeCC---CCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCChHHHHHHHHHHHHHHhc----------------CCc
Confidence 0000 000011456889999999999999999999999865556789999999887621 234
Q ss_pred EEEeccccc
Q psy3197 337 VFWCGDLNF 345 (459)
Q Consensus 337 vfw~GDLNy 345 (459)
+|++||||-
T Consensus 171 ~il~GDfN~ 179 (266)
T 3teb_A 171 KILMGDFNT 179 (266)
T ss_dssp EEEEEECCC
T ss_pred EEEEeECCC
Confidence 899999994
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.02 E-value=5.4e-10 Score=105.10 Aligned_cols=158 Identities=14% Similarity=0.059 Sum_probs=91.5
Q ss_pred ccccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCce
Q psy3197 161 HKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTL 240 (459)
Q Consensus 161 ~k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi 240 (459)
.+.|+.|||.+-+.... .......+.+++. +..|| |||+||+... +...+.+.++. |........++.
T Consensus 12 ~~l~v~s~Ni~g~~~~~--~~~r~~~i~~~i~----~~~pD--Ii~LQEv~~~---~~~~l~~~~~~-~~~~~~~~~~~~ 79 (256)
T 4fva_A 12 FEVSVMSWNIDGLDGRS--LLTRMKAVAHIVK----NVNPD--ILFLQEVVDR---DLAPIDKLQSL-YKIYYSNKGCQY 79 (256)
T ss_dssp CEEEEEEEECCTTCCTT--HHHHHHHHHHHHH----HHCCS--EEEEEEECST---TCHHHHGGGGT-EEEEESSTTSSS
T ss_pred CEEEEEEEecCCCCCcC--HHHHHHHHHHHHH----HcCCC--EEEEEecChh---HhHHHHHhcCC-ceEeecCCCCCc
Confidence 45899999975332100 0000112233333 45688 7899998543 22344444443 333334445566
Q ss_pred eEEEEEecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCC
Q psy3197 241 HLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKE 320 (459)
Q Consensus 241 ~l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~ 320 (459)
+.++++++.+... ......+....+..+.+.+.+.+.+..+.++|+||.+......+|..++..+.+.+..-..
T Consensus 80 g~~il~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~~~ 153 (256)
T 4fva_A 80 YTAILVSKMFDVE------KHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIA 153 (256)
T ss_dssp EEEEEEETTCEEE------EEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeecccce------ecccccCCCCcccceeEEEEEEeCCeEEEEEEecCCCCCcchHHHHHHHHHHHHHhhhhhh
Confidence 7888888654221 0111112222245678889999999999999999999887777777777776654311000
Q ss_pred CCCCCCCCCcccCceeEEEecccccc
Q psy3197 321 LPCKHRHKDVTQNYDYVFWCGDLNFR 346 (459)
Q Consensus 321 ~~~~~~~~~~~~~~d~vfw~GDLNyR 346 (459)
......+|++||||-+
T Consensus 154 ----------~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 154 ----------QNPGALVFFGGDLNLR 169 (256)
T ss_dssp ----------HSTTCEEEEEEECCCC
T ss_pred ----------ccCCCcEEEeccCCCC
Confidence 0112358999999954
No 14
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.95 E-value=2.6e-09 Score=101.65 Aligned_cols=141 Identities=15% Similarity=0.074 Sum_probs=83.9
Q ss_pred CCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEee-cCceeEEEEEecccccccCCCcc--c--cceeeee-eec
Q psy3197 197 DHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTT-LGTLHLAVYVRRHLIWFCSEPEE--A--DYSVRAG-SAF 270 (459)
Q Consensus 197 d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~-l~gi~l~Vfvr~~~~~~is~v~~--~--~~~~g~G-~~~ 270 (459)
...|| |+|+||+... +...+.+.++..|....... ..+.+++||+|++..+.+..... . ....+.+ ...
T Consensus 33 ~~~~D--Iv~LQEv~~~---~~~~l~~~l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 107 (257)
T 3l1w_A 33 FHDWS--LCCIQEVRPN---QVRDLKAYTTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAG 107 (257)
T ss_dssp HHCCS--EEEEEEECHH---HHHHHHHHSSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCS
T ss_pred HcCCC--EEEEeCCCHH---HHHHHHhcCCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcCCCCccccccccc
Confidence 34677 8899998632 33445555654443332221 46678999998664333211000 0 0000111 123
Q ss_pred ccCceEEEeeeEc--CeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEecccccccc
Q psy3197 271 RTKGAVAIGFTLF--GSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVT 348 (459)
Q Consensus 271 gNKGaV~i~~~i~--~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNyRi~ 348 (459)
..++++.+.+... +..+.++|+||.+.. .+.|..++..|.+.+.- .. ..+.+|++|||| .
T Consensus 108 ~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~--~~~r~~q~~~l~~~i~~--~~-----------~~~pvil~GDfN---~ 169 (257)
T 3l1w_A 108 CPRIALWGLFKETTQNTPFLVINVHLDHIS--AHARLAGMTVILEELHD--KI-----------AQYPTLLMGDFN---A 169 (257)
T ss_dssp SCCEEEEEEEEETTCSSCEEEEEEECCSSC--HHHHHHHHHHHHHHTHH--HH-----------HHSCEEEEEECC---C
T ss_pred ccceeEEEEEEEcCCCCEEEEEEeCCCCCC--HHHHHHHHHHHHHHHHH--Hc-----------CCCCEEEEeeCC---C
Confidence 3678888888874 689999999999863 35688899998887630 00 001489999999 5
Q ss_pred CChhHHHHHHhc
Q psy3197 349 QPRDDVIHWFKQ 360 (459)
Q Consensus 349 ~~~~~v~~~i~~ 360 (459)
.+.+.....+.+
T Consensus 170 ~~~~~~~~~l~~ 181 (257)
T 3l1w_A 170 ESGEEVHQLVQK 181 (257)
T ss_dssp CTTSHHHHHHTT
T ss_pred CCCcHHHHHhhh
Confidence 565655555554
No 15
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.93 E-value=1.5e-09 Score=110.23 Aligned_cols=158 Identities=14% Similarity=0.068 Sum_probs=94.9
Q ss_pred ccccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCce
Q psy3197 161 HKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTL 240 (459)
Q Consensus 161 ~k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi 240 (459)
.+.|+.|||.+-+.... .......+.+++. .+.|| ||||||+.... ...+...+ ..|.......-++.
T Consensus 118 ~~lkVlSWNI~Gl~~~~--~~~R~~~I~~~I~----~~~PD--IV~LQEv~~~~---~~~l~~~~-~~y~~~~~~~~~~~ 185 (362)
T 4gew_A 118 FEVSVMSWNIDGLDGRS--LLTRMKAVAHIVK----NVNPD--ILFLQEVVDRD---LAPIDKLQ-SLYKIYYSNKGCQY 185 (362)
T ss_dssp CEEEEEEEECCTTCCTT--HHHHHHHHHHHHH----HHCCS--EEEEEEECSTT---CHHHHGGG-GTEEEEESSTTSSS
T ss_pred CeEEEEEEEeCCCCCcC--HHHHHHHHHHHHH----HcCCC--EEEEEcCChhH---hHHHHHhc-CCceEEeCCCCCCc
Confidence 45899999985432110 0000112334443 56788 88999975432 23344433 34655555566677
Q ss_pred eEEEEEecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCC
Q psy3197 241 HLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKE 320 (459)
Q Consensus 241 ~l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~ 320 (459)
+.+||+|+++... ..............+++.+.+.+.+..++++|.||.+......+|..++..+...+..-..
T Consensus 186 G~aIlsk~~i~~~------~~~~~~~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~~ 259 (362)
T 4gew_A 186 YTAILVSKMFDVE------KHDVIHFQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIA 259 (362)
T ss_dssp EEEEEEETTEEEE------EEEEEECTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeccCccc------cccccCCCCCcccceEEEEEEEECCEEEEEEEecCCccccchhHHHHHHHHHHHHhHhhhh
Confidence 8999999754211 0001111111224678888999999999999999999888888888888887765421000
Q ss_pred CCCCCCCCCcccCceeEEEecccccc
Q psy3197 321 LPCKHRHKDVTQNYDYVFWCGDLNFR 346 (459)
Q Consensus 321 ~~~~~~~~~~~~~~d~vfw~GDLNyR 346 (459)
......+|++||||-+
T Consensus 260 ----------~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 260 ----------QNPGALVFFGGDLNLR 275 (362)
T ss_dssp ----------HCTTCEEEEEEECCCC
T ss_pred ----------cCCCCCeEEeecCCCC
Confidence 0112348999999943
No 16
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.90 E-value=4.5e-09 Score=102.38 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=59.7
Q ss_pred eeEEEEEecccccccCCCccccceeeee-eecccCceEEEeeeEcCeEEEEEeccccccc------hhHHHHHHHHHHHH
Q psy3197 240 LHLAVYVRRHLIWFCSEPEEADYSVRAG-SAFRTKGAVAIGFTLFGSSFLFVTSHLTAHE------ERVKDRIDDVRRIV 312 (459)
Q Consensus 240 i~l~Vfvr~~~~~~is~v~~~~~~~g~G-~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~------~~~~~Rn~d~~~I~ 312 (459)
-+++|++|.++....... .+.+.| ....++|++.+.+.+.+..+.++|+||.+.. .....|..++..|.
T Consensus 101 ~G~ailSr~pi~~~~~~~----~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~ 176 (301)
T 1zwx_A 101 GGVAVVSQWPIVEKSQHI----FQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQ 176 (301)
T ss_dssp CCCEEEESSCEEEEEEEE----CSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCcccceEEE----ecCCCCcccccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHH
Confidence 567888988765321110 010111 1234789999999999999999999999873 34567889988888
Q ss_pred HhcCCCCCCCCCCCCCCcccCceeEEEeccccc
Q psy3197 313 KSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 313 ~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
+.+.-.. . .....+|++||||-
T Consensus 177 ~~i~~~~-~----------~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 177 TFIAKKN-I----------PKDEIIFIGGDLNV 198 (301)
T ss_dssp HHHHHHT-C----------CTTSEEEEEEECCC
T ss_pred HHHHHhC-C----------CCCCeEEEEeeCCC
Confidence 7762100 0 01234899999993
No 17
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.89 E-value=6.7e-09 Score=95.94 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=85.4
Q ss_pred cccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCcee
Q psy3197 162 KQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLH 241 (459)
Q Consensus 162 k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi~ 241 (459)
+.|+.|||.+-+..... ......+.+++. ...|| |||+||+.. .+...+...++..+.... ... +..
T Consensus 3 ~l~v~t~Ni~g~~~~~~--~~r~~~i~~~i~----~~~pD--Ii~LQEv~~---~~~~~l~~~~~~~~~~~~-~~~-~~~ 69 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNL--ADRARGLCSYLA----LYTPD--VVFLQELIP---AYVQYLKKRAVSYLFFEG-SDD-GYF 69 (250)
T ss_dssp CEEEEEEECCTTCCTTH--HHHHHHHHHHHH----HHCCS--EEEEEEECH---HHHHHHHHHCTTEEEEES-CSS-SSE
T ss_pred eEEEEEEEeCCCCCcCH--HHHHHHHHHHHH----HcCCC--EEEEEeCCH---HHHHHHHHhccCceeecc-ccc-ccC
Confidence 46888999753321000 000112233333 45688 889999743 334555555554333222 222 222
Q ss_pred EEEEEecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCC
Q psy3197 242 LAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKEL 321 (459)
Q Consensus 242 l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~ 321 (459)
-.++.+.+..+.++ .............+.+.+.+.+.+..+.++++||.+.....++|..++..|.+.+.- .
T Consensus 70 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~---~ 141 (250)
T 4f1h_A 70 TGIMLRKSRVKFLE-----SEIICFPTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQSQERTKQLRVVLQKIKE---A 141 (250)
T ss_dssp EEEEEETTTCEEEE-----EEEEECTTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHH---S
T ss_pred ceeEEeecccccee-----cccccccCccccceEEEEEEecCCcEEEEeccccccccccHHHHHHHHHHHHHHHHh---c
Confidence 23333333222211 001111111233567788888999999999999999888888899999999887621 0
Q ss_pred CCCCCCCCcccCceeEEEeccccc
Q psy3197 322 PCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 322 ~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
.....+|++||||-
T Consensus 142 ----------~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 142 ----------PEDAIVIFAGDTNL 155 (250)
T ss_dssp ----------CTTEEEEEEEECCC
T ss_pred ----------CCCCCEEEEEecCC
Confidence 01234899999993
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.75 E-value=1.2e-08 Score=97.71 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=115.4
Q ss_pred cccCcCcchhhhhhccCCC--CCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEee---
Q psy3197 162 KQRTPSYTDRILFKSRQRP--PGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTT--- 236 (459)
Q Consensus 162 k~R~psw~dRil~~~~~~~--~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~--- 236 (459)
..|+.+||.+.+....... ......+.+.+. ...|| |+|+||+... ....+.+.| ..|..+....
T Consensus 3 ~l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~----~~~~D--Iv~LQEv~~~---~~~~l~~~l-~~y~~~~~~~~~~ 72 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIK----DHELD--IVGMQEVLHN---QFQDLRAGL-PEYDGIGVGRDDG 72 (267)
T ss_dssp EEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHH----HTTCS--EEEEESBCHH---HHHHHHHHC-TTEEEECCCTTTS
T ss_pred cEEEEEEEeccCCCCccccCHHHHHHHHHHHHH----HcCCC--EEEEecCCHH---HHHHHHHhc-cCCcEEEecCCCC
Confidence 3678888876554221100 001111222222 34678 8899998632 334455555 3444443221
Q ss_pred -cCceeEEEEEecccccccCCCcc--c---cc--eeeeeeecccCceEEEeeeE--cCeEEEEEeccccccchhHHHHHH
Q psy3197 237 -LGTLHLAVYVRRHLIWFCSEPEE--A---DY--SVRAGSAFRTKGAVAIGFTL--FGSSFLFVTSHLTAHEERVKDRID 306 (459)
Q Consensus 237 -l~gi~l~Vfvr~~~~~~is~v~~--~---~~--~~g~G~~~gNKGaV~i~~~i--~~~s~~FVn~HLaA~~~~~~~Rn~ 306 (459)
..|-+++||.|++..+.+..... . .. ..|++ ...+++++.+.+.. .+..++++|+||.+.. ...|.+
T Consensus 73 ~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~--~~~R~~ 149 (267)
T 3g6s_A 73 KTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWD-AVCVRIATWAKFKDKATGKIFMAVNTHFDHVG--EEARRQ 149 (267)
T ss_dssp SSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTT-CSSCCEEEEEEEEETTTCCEEEEEEEECCSSC--HHHHHH
T ss_pred CcCCceeEEEEEccceEEEecccEecCCCCCcccccccc-ccCcceEEEEEEEEcCCCCEEEEEEeCCCCCC--HHHHHH
Confidence 24455888866554443211000 0 00 00111 12356788888884 6789999999998754 456777
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEeccccccccCChhHHHHHHhcCC--CCCCCCCCCCccchhHHH----
Q psy3197 307 DVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQT--FPLPPTMPMQLDCQLNKS---- 380 (459)
Q Consensus 307 d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~--~~~~~~~~ll~~DQL~~~---- 380 (459)
+.+.|.+.+.- .. ....+|++|||| ..+.+.+...+.... +. |-....
T Consensus 150 q~~~l~~~l~~---~~----------~~~pvIl~GDfN---~~~~~~~~~~l~~~~~~l~----------d~~~~~~~~~ 203 (267)
T 3g6s_A 150 SALLIIRKIKE---IV----------GERPAVVTGDFN---VTDASDAYETITTNEFVMK----------DAYKTAARVT 203 (267)
T ss_dssp HHHHHHHHHHH---HT----------TTSCEEEEEECS---SCTTSHHHHHHHSSSSCCE----------EHHHHCSEEE
T ss_pred HHHHHHHHHHH---hc----------CCCCEEEEeECC---CCCCCHHHHHhhcCCcchh----------hhHhhhcccc
Confidence 77777766521 00 012388999999 566665555554432 21 111100
Q ss_pred --------H------HcCCC---ccCCcceEeeccccCCC---CccCCcceeceEEeE
Q psy3197 381 --------L------SEGSV---FRGGEIQCLHYSSVPSI---CSSDHKPVWGLYKCS 418 (459)
Q Consensus 381 --------~------~~g~~---~~~~~i~~~~Y~s~~~i---~~SDHkPV~a~f~v~ 418 (459)
+ ....+ |....+++..+...... ..|||.||.|.....
T Consensus 204 ~~~~T~~~~~~~~~~~~~riD~I~~s~~~~~~~~~v~~~~~~~~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 204 GVDYTFHDFARIPAEDCEKIDFIFVTPQVLVKSCEIPAEVPEALLSDHNPQLADLELE 261 (267)
T ss_dssp ECSCSBCTTTTSCGGGCCCCEEEEECTTSEEEEEEECCCCSSSCCCSBCCEEEEEEEC
T ss_pred CCCCCEeCCCCCCCCCCCcEeEEEeCCCceEEEEEEecCCCCCCCCCcccEEEEEEec
Confidence 0 00111 33334666777666543 469999999988754
No 19
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.73 E-value=4.9e-08 Score=95.06 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=58.8
Q ss_pred ceeEEEEEecccccccCCCccccceeeee-eecccCceEEEeeeEcCeEEEEEeccccccc------hhHHHHHHHHHHH
Q psy3197 239 TLHLAVYVRRHLIWFCSEPEEADYSVRAG-SAFRTKGAVAIGFTLFGSSFLFVTSHLTAHE------ERVKDRIDDVRRI 311 (459)
Q Consensus 239 gi~l~Vfvr~~~~~~is~v~~~~~~~g~G-~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~------~~~~~Rn~d~~~I 311 (459)
.-+++|++|.++...... ....+.| .....+|++.+.+.+.+..+.++|+||.+.. .....|..++..|
T Consensus 100 ~~G~ailSr~pi~~~~~~----~~~~~~~~~~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l 175 (306)
T 2ddr_A 100 DGGVAIVSKWPIAEKIQY----VFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEI 175 (306)
T ss_dssp CCCCEEEESSCEEEEEEE----ECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccccEE----EcCCCCCcchhcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHH
Confidence 457788888776432110 0000111 1234689999999999999999999999873 3456788888888
Q ss_pred HHhcCCCCCCCCCCCCCCcccCceeEEEecccccc
Q psy3197 312 VKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFR 346 (459)
Q Consensus 312 ~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNyR 346 (459)
.+.+.-.. . .....+|++||||-.
T Consensus 176 ~~~i~~~~-~----------~~~~pvil~GDfN~~ 199 (306)
T 2ddr_A 176 QDFIKNKN-I----------PNNEYVLIGGDMNVN 199 (306)
T ss_dssp HHHHHHHT-C----------CTTSCEEEEEECCCC
T ss_pred HHHHHHhc-C----------CCCCEEEEEeeCCCC
Confidence 77652100 0 001248899999943
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=2.1e-08 Score=98.29 Aligned_cols=141 Identities=17% Similarity=0.130 Sum_probs=80.2
Q ss_pred CCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEee----cCceeEEEEEecccccccCCCc-----c-ccceeee
Q psy3197 197 DHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTT----LGTLHLAVYVRRHLIWFCSEPE-----E-ADYSVRA 266 (459)
Q Consensus 197 d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~----l~gi~l~Vfvr~~~~~~is~v~-----~-~~~~~g~ 266 (459)
...|| |||+||+.. .+...+.+.|+ .|..+.... ..|...+||.|++..+.+.... . .....|+
T Consensus 41 ~~~~D--Iv~LQEv~~---~~~~~l~~~l~-~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~ 114 (298)
T 3mpr_A 41 YHDFD--IFGTQECFL---HQLKDMKEALP-GYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGW 114 (298)
T ss_dssp HTTCS--EEEEESBCH---HHHHHHHHHST-TEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCT
T ss_pred HcCCC--EEEEeCCCH---HHHHHHHHhCC-CCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCccc
Confidence 34678 889999863 23455666663 354443222 2345578885555443321100 0 0000111
Q ss_pred eeecccCceEEEeee--EcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEecccc
Q psy3197 267 GSAFRTKGAVAIGFT--LFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLN 344 (459)
Q Consensus 267 G~~~gNKGaV~i~~~--i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLN 344 (459)
+. ..+++++.+.|. ..+..++++|+||.+.. ...|.++...|.+.+.- ... .....+|++||||
T Consensus 115 ~~-~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~--~~~R~~q~~~l~~~i~~---~~~--------~~~~pvIl~GDfN 180 (298)
T 3mpr_A 115 DA-VLPRICSWGHFKCKDTGFEFLFFNLHMDHIG--KKARVESAFLVQEKMKE---LGR--------GKNLPAILTGDFN 180 (298)
T ss_dssp TC-SSCCEEEEEEEEETTTCCEEEEEEEECCSSC--HHHHHHHHHHHHHHHHH---TTT--------TSCCCEEEEEECS
T ss_pred cc-ccCceeEEEEEEEcCCCCEEEEEEecCCCCC--HHHHHHHHHHHHHHHHH---Hhc--------CCCCcEEEEEeCC
Confidence 11 135678888888 56889999999998643 35688888888776621 000 0112388999999
Q ss_pred ccccCChhHHHHHHhc
Q psy3197 345 FRVTQPRDDVIHWFKQ 360 (459)
Q Consensus 345 yRi~~~~~~v~~~i~~ 360 (459)
..+.+.....+.+
T Consensus 181 ---~~~~~~~~~~l~~ 193 (298)
T 3mpr_A 181 ---VDQTHQSYDAFVS 193 (298)
T ss_dssp ---SCTTSHHHHHHHT
T ss_pred ---CCCCCHHHHHHhc
Confidence 6666655444443
No 21
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.62 E-value=1.1e-07 Score=89.69 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=64.8
Q ss_pred CCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCceeEEEEEecccccccCCCccccceeeeeee-c-ccCc
Q psy3197 197 DHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSA-F-RTKG 274 (459)
Q Consensus 197 d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~~-~-gNKG 274 (459)
...|| |+|+||...........+... .+|..+....-+.-+++|++|.++..... ++.+. . ...+
T Consensus 24 ~~~~D--Iv~LQE~~~~~~~~~~~~~~~--~gy~~~~~~~~~~~G~ailsr~~~~~~~~---------~~~~~~~~~~~~ 90 (256)
T 2jc4_A 24 DNPPD--ILVLQELKLDQDKFPAAALQM--MGWHCVWSGQKTYNGVAIVSRSVPQDVHF---------GLPALPDDPQRR 90 (256)
T ss_dssp SSCCS--EEEEECCCSCGGGSCHHHHHT--TTCEEEEECCSSSCCEEEEESSCCEEEEE---------SCTTSTTCCSCC
T ss_pred hcCCC--EEEEEeeccchhcCCHhHHhh--cCCeEEECCCCcceEEEEEECCChHHhee---------cCCCCccCCcCc
Confidence 45688 789999875432221111122 34544433334456789999987542111 11111 0 1223
Q ss_pred eEEEeeeEcCeEEEEEeccccccch----hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEecccccc
Q psy3197 275 AVAIGFTLFGSSFLFVTSHLTAHEE----RVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFR 346 (459)
Q Consensus 275 aV~i~~~i~~~s~~FVn~HLaA~~~----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNyR 346 (459)
.+.+ .+. .+.++|+|+.+... ..+.|.+++..+.+.+.- . ......++++||||-.
T Consensus 91 ~~~~--~~~--~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~---~---------~~~~~~~il~GDFN~~ 150 (256)
T 2jc4_A 91 VIAA--TVS--GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD---E---------MTRHGKLVLLGDFNIA 150 (256)
T ss_dssp EEEE--EET--TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH---H---------HTTCSSEEEEEECCCC
T ss_pred EEEE--EeC--CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH---H---------hcCCCCEEEEeECCCC
Confidence 4444 342 69999999988653 344566666666554410 0 0011238899999953
No 22
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.61 E-value=6.8e-08 Score=91.31 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=75.1
Q ss_pred ccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCceeE
Q psy3197 163 QRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHL 242 (459)
Q Consensus 163 ~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi~l 242 (459)
.|+.+||.+-+..... ..+.+++. ...|| |+|+||...........+....+..|........+.-++
T Consensus 2 l~v~t~Ni~~~~~~~~------~~i~~~i~----~~~~D--Ii~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~~G~ 69 (259)
T 2jc5_A 2 LKIISANVNGIRSAYK------KGFYEYIA----ASGAD--IVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGV 69 (259)
T ss_dssp EEEEEEECSSHHHHHH------TTHHHHHH----HTTCS--EEEEECCCCCGGGCCHHHHSGGGCEEEEECCSSTTCCCE
T ss_pred cEEEEEeeccHHHHHH------hHHHHHHH----hcCCC--EEEEEEecchhhccChhhccccCCeEEEeccCCCCcceE
Confidence 3667788765432211 02333433 45688 789999865432221223223333332221123344578
Q ss_pred EEEEecccccccCCCccccceeeeee-ecccCceEEEeeeEcCeEEEEEeccccccchh---HHHHHHHHHHHHHhcCCC
Q psy3197 243 AVYVRRHLIWFCSEPEEADYSVRAGS-AFRTKGAVAIGFTLFGSSFLFVTSHLTAHEER---VKDRIDDVRRIVKSLDLP 318 (459)
Q Consensus 243 ~Vfvr~~~~~~is~v~~~~~~~g~G~-~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~---~~~Rn~d~~~I~~~l~f~ 318 (459)
+|++|.++..... +++. .....|. .+.+.+ ..+.++|+|+.+.... ...|.+.+..+.+.+.-
T Consensus 70 ailsr~~~~~~~~---------~~~~~~~~~~~r-~~~~~~--~~~~v~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~- 136 (259)
T 2jc5_A 70 AVYSKRKPDNVQI---------GMGIEEFDREGR-FVRCDF--GRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEA- 136 (259)
T ss_dssp EEEESSCCSEEEE---------SCSCHHHHTTCC-EEEEEE--TTEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEecCceeEEe---------CCCCCccCCCCe-EEEEEc--CCEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHH-
Confidence 9999987643211 1111 1123343 233333 4799999999987542 22233556666554410
Q ss_pred CCCCCCCCCCCcccCceeEEEecccccc
Q psy3197 319 KELPCKHRHKDVTQNYDYVFWCGDLNFR 346 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~d~vfw~GDLNyR 346 (459)
. ......++++||||-.
T Consensus 137 --~---------~~~~~~~Il~GDFN~~ 153 (259)
T 2jc5_A 137 --M---------KNEGRDIVVCGDWNIA 153 (259)
T ss_dssp --H---------HHTCSEEEEEEECCCC
T ss_pred --H---------HhcCCCEEEEeeCCCC
Confidence 0 0012348999999954
No 23
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.44 E-value=9.5e-08 Score=92.27 Aligned_cols=149 Identities=19% Similarity=0.167 Sum_probs=76.2
Q ss_pred cccccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEE-e-ec
Q psy3197 160 SHKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLES-T-TL 237 (459)
Q Consensus 160 ~~k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s-~-~l 237 (459)
....|+.+||.+-+..... ..+..++. ...|| |+|+||...........+....+..|..... . ..
T Consensus 26 ~~~l~v~t~Ni~~~~~~~~------~~i~~~i~----~~~~D--Ii~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~ 93 (285)
T 2o3h_A 26 PATLKIASWNVDGLRAWIK------KKGLDWVK----EEAPD--ILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKE 93 (285)
T ss_dssp BCCEEEEEEECSSHHHHHH------TTHHHHHH----HHCCS--EEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC--C
T ss_pred ccceEEEEEecccChhhhh------hhHHHHHH----hcCCC--EEEEEEeecchhhccHHHHhccCCcEEEEecccCCc
Confidence 3458999999986543211 11333333 45688 8899998654321111122222332222222 1 22
Q ss_pred CceeEEEEEecccccccCCCccccceeeeee-ecccCceEEEeeeEcCeEEEEEeccccccch---hHHHHHHHHHHHHH
Q psy3197 238 GTLHLAVYVRRHLIWFCSEPEEADYSVRAGS-AFRTKGAVAIGFTLFGSSFLFVTSHLTAHEE---RVKDRIDDVRRIVK 313 (459)
Q Consensus 238 ~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~-~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~---~~~~Rn~d~~~I~~ 313 (459)
+.-+++||+|.+...... +++. .....|-+ +.+. ...+.++|+|+.+... ..+.|.+++..|.+
T Consensus 94 g~~Gvailsr~~~~~~~~---------~~~~~~~~~~~r~-l~~~--~~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~ 161 (285)
T 2o3h_A 94 GYSGVGLLSRQCPLKVSY---------GIGDEEHDQEGRV-IVAE--FDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRK 161 (285)
T ss_dssp CSCCEEEEESSCCSEEEE---------SCSCGGGSSBCCE-EEEE--CSSCEEEEEECCCCCGGGTTHHHHHHHHHHHHH
T ss_pred ccceEEEEEccChHHeee---------ccCCcccCCCCcE-EEEE--eCCEEEEEEEcCCCCCcchhHHHHHHHHHHHHH
Confidence 324789999987532211 1111 11223322 2222 2579999999987543 34456666666655
Q ss_pred hcCCCCCCCCCCCCCCcccCceeEEEeccccc
Q psy3197 314 SLDLPKELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 314 ~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
.+.- . .....+|++||||-
T Consensus 162 ~l~~---~----------~~~~p~Il~GDFN~ 180 (285)
T 2o3h_A 162 FLKG---L----------ASRKPLVLCGDLNV 180 (285)
T ss_dssp HHHH---H----------HTTSCEEEEEECSC
T ss_pred HHHh---h----------ccCCCEEEEEECCC
Confidence 5410 0 00133899999995
No 24
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.43 E-value=1.1e-06 Score=81.61 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=75.0
Q ss_pred cccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCcee
Q psy3197 162 KQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLH 241 (459)
Q Consensus 162 k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi~ 241 (459)
..|+.+||.+-+... .....+.+++. .+.|| |+|+||.......... + ...+..|.......-++-+
T Consensus 7 ~lri~t~Nv~g~~~~-----~~~~~~~~~i~----~~~~D--Iv~LQE~~~~~~~~~~-l-~~~~y~~~~~~~~~~~~~G 73 (238)
T 1vyb_A 7 HITILTLNINGLNSA-----IKRHRLASWIK----SQDPS--VCCIQETHLTCRDTHR-L-KIKGWRKIYQANGKQKKAG 73 (238)
T ss_dssp CEEEEEEECSCCCSH-----HHHHHHHHHHH----HHCCS--EEEEECCCCCTTSGGG-C-CCTTCCEEEEECCSSSSCC
T ss_pred cceEEEEecccCCch-----hhHHHHHHHHH----HcCCC--EEEEecccCCCCCchh-H-hhCCCCeEEEccCCCCCce
Confidence 478888887643210 00012333333 45688 8899998543221110 1 1113333322222223448
Q ss_pred EEEEEecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCC
Q psy3197 242 LAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKEL 321 (459)
Q Consensus 242 l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~ 321 (459)
++|++|.++...+..+.. -...-.+.+.+.+.+..+.++|+|+++.... | .+..+.+.+.-.
T Consensus 74 vail~r~~~~~~~~~~~~----------~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~~---~--~~~~l~~~l~~~--- 135 (238)
T 1vyb_A 74 VAILVSDKTDFKPTKIKR----------DKEGHYIMVKGSIQQEELTILNIYAPNTGAP---R--FIKQVLSDLQRD--- 135 (238)
T ss_dssp EEEEECTTCCCEEEEEEE----------CTTSSEEEEEEEETTEEEEEEEEECCSSSHH---H--HHHHHHHHTTTT---
T ss_pred EEEEEeCCCCccccceeE----------cCCCcEEEEEEEeCCCcEEEEEEecCCCCcH---H--HHHHHHHHHHhc---
Confidence 899999874221111100 0122356777888889999999999986541 2 244455555210
Q ss_pred CCCCCCCCcccCceeEEEeccccc
Q psy3197 322 PCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 322 ~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
+ ...++++||||-
T Consensus 136 ~-----------~~~~Il~GDFN~ 148 (238)
T 1vyb_A 136 L-----------DSHTLIMGDFNT 148 (238)
T ss_dssp C-----------CTTEEEEEECSS
T ss_pred c-----------CCCEEEEccCCC
Confidence 0 123889999994
No 25
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=98.39 E-value=1.1e-06 Score=83.23 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=77.4
Q ss_pred cccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEee-c-Cc
Q psy3197 162 KQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTT-L-GT 239 (459)
Q Consensus 162 k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~-l-~g 239 (459)
..|+.+||.+-+... ...+..++. ...|| |+|+||........ +.. ...|..+.... - +.
T Consensus 19 ~lri~s~Nv~~~~~~-------~~~l~~~i~----~~~~D--Iv~lQE~~~~~~~~---~~~--~~gy~~~~~~~~~~~~ 80 (245)
T 1wdu_A 19 PYRVLQANLQRKKLA-------TAELAIEAA----TRKAA--IALIQEPYVGGAKS---MKG--FRGVRVFQSTAQGDGT 80 (245)
T ss_dssp CEEEEEEECTTCHHH-------HHHHHHHHH----HHTCS--EEEEESCCC---------CC--CSSCEEEECCCCTTCC
T ss_pred ceeeeeeeccccHHH-------HHHHHHHHh----hcCCC--EEEEEcccccCCcc---ccC--CCcceEeccccccCCC
Confidence 468888988643211 112334443 45678 88999975432111 111 23454432221 1 12
Q ss_pred eeEEEEEecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCC
Q psy3197 240 LHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPK 319 (459)
Q Consensus 240 i~l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~ 319 (459)
-+.+|+++++-.+..... .....|++.+.+...+..+.++|+|+..+.. .+++.+++..+++.+ .
T Consensus 81 ~GvaIl~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~-~~~~~~~l~~~~~~~--~- 145 (245)
T 1wdu_A 81 VKAAIAVFDHDLDVIQYP-----------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKP-IESYLEQIKRVERKM--G- 145 (245)
T ss_dssp CCEEEEECCSSCEEEECT-----------TTCCSSEEEEEEECSSCEEEEEEEECCTTSC-SHHHHHHHHHHHHTT--C-
T ss_pred CCeEEEEECCCcceEEec-----------ccccCCEEEEEEEcCCCcEEEEEEEeCCCCC-HHHHHHHHHHHHHHh--C-
Confidence 356888865322221100 0124678888888888899999999998753 345566777777654 1
Q ss_pred CCCCCCCCCCcccCceeEEEeccccc
Q psy3197 320 ELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 320 ~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
. ..++++||||=
T Consensus 146 ~--------------~~~Ii~GDfN~ 157 (245)
T 1wdu_A 146 P--------------KRLIFGGDANA 157 (245)
T ss_dssp S--------------SSEEEEEECCC
T ss_pred C--------------CcEEEEecccc
Confidence 1 12889999993
No 26
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.35 E-value=1e-06 Score=83.60 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=77.0
Q ss_pred CCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCceeEEEEEecccccccCCCccccceeeeee--ecccCc
Q psy3197 197 DHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGS--AFRTKG 274 (459)
Q Consensus 197 d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~--~~gNKG 274 (459)
...|| |+|+||.......+...+.+..+..| +....-++.+++||+|.++.... .++.. ....++
T Consensus 24 ~~~~D--ii~LQE~~~~~~~~~~~~l~~~gy~~--~~~~~~~~~G~ailsr~~~~~~~---------~~~~~~~~~~~~~ 90 (268)
T 1ako_A 24 KHQPD--VIGLQETKVHDDMFPLEEVAKLGYNV--FYHGQKGHYGVALLTKETPIAVR---------RGFPGDDEEAQRR 90 (268)
T ss_dssp HHCCS--EEEEECCCCCGGGCCHHHHHHTTCEE--EEEEETTEEEEEEEESSCCSEEE---------ESSTTCCHHHHTT
T ss_pred HcCCC--EEEEEeccCChhhCCHhHhccCCCcE--EEeCCCCcceEEEEEecCcceee---------eCCCCcccccCCC
Confidence 45688 78999986543322122222234333 33335566789999998754321 11111 124678
Q ss_pred eEEEeeeEcCeEEEEEeccccccch-----hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEeccccc
Q psy3197 275 AVAIGFTLFGSSFLFVTSHLTAHEE-----RVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 275 aV~i~~~i~~~s~~FVn~HLaA~~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
++.+.+.+.+..++++|+||.+... ..+.|.+++..|.+.+.-.. .....+|++||||-
T Consensus 91 ~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~------------~~~~~~Il~GDFN~ 154 (268)
T 1ako_A 91 IIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETEL------------KRDNPVLIMGDMNI 154 (268)
T ss_dssp EEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHC------------CTTSCEEEEEECCC
T ss_pred EEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhh------------hCCCCEEEEeECCC
Confidence 9999999988999999999998653 34567777777776652100 01234899999994
No 27
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=98.26 E-value=1.5e-06 Score=91.12 Aligned_cols=124 Identities=12% Similarity=0.065 Sum_probs=65.0
Q ss_pred ccccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhc--CCceeEEEEe---
Q psy3197 161 HKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTL--GHSFVMLEST--- 235 (459)
Q Consensus 161 ~k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L--~~~y~~v~s~--- 235 (459)
...|+.+||.+-+.....+ ....+.+++. .+.|| ||||||.......+... +.+ ...|..+...
T Consensus 148 ~~LKI~TwNVnGl~~~~kr---~~~~i~~~I~----~~~pD--IVcLQEtk~~~~~~~~~--~~la~~~GY~~~~~~~~~ 216 (467)
T 2j63_A 148 RMYKFITWNVAGLRGLLKK---NASALRAFME----AEKPD--VLCLQETKLNVDEADAN--ATLGVVDGYSFVDHPCAF 216 (467)
T ss_dssp TEEEEEEEECSCHHHHHHH---CTTHHHHHHH----HHCCS--EEEEECCCCCTTCHHHH--HTSSCCTTEEEEEECCSS
T ss_pred CCeEEEEEEcCCCcccccc---cHHHHHHHHH----HcCCC--EEEEEecccchhccchH--HHHhhcCCceEEEecccC
Confidence 4489999999865432111 0123444554 45788 88999986543333211 112 1345444332
Q ss_pred ecCceeEEEEEecccccccCCCccccceeeee------------------eecc-cCceEEEeeeEcC------eEEEEE
Q psy3197 236 TLGTLHLAVYVRRHLIWFCSEPEEADYSVRAG------------------SAFR-TKGAVAIGFTLFG------SSFLFV 290 (459)
Q Consensus 236 ~l~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G------------------~~~g-NKGaV~i~~~i~~------~s~~FV 290 (459)
.-+.-+++||+|+++.+.. +. .....|+. ..+. ....+.+.+.+.+ ..|.++
T Consensus 217 ~~g~~GVAIlsR~pi~~~~--l~-~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vi 293 (467)
T 2j63_A 217 KRGYSGTRTYMKNSTTVKG--LH-ARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALV 293 (467)
T ss_dssp STTSCCEEEEEECCCCCCT--SC-CEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEE
T ss_pred CCCcceEEEEEeCCccccc--cc-eeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCcccccCceEEEE
Confidence 3344578999998874110 00 00001110 0111 2235666666555 789999
Q ss_pred eccccccc
Q psy3197 291 TSHLTAHE 298 (459)
Q Consensus 291 n~HLaA~~ 298 (459)
|+|++...
T Consensus 294 nvYlP~~~ 301 (467)
T 2j63_A 294 NTYVANSG 301 (467)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998753
No 28
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.25 E-value=3.4e-06 Score=83.32 Aligned_cols=149 Identities=19% Similarity=0.170 Sum_probs=74.3
Q ss_pred cccccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEE-e-ec
Q psy3197 160 SHKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLES-T-TL 237 (459)
Q Consensus 160 ~~k~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s-~-~l 237 (459)
....|+.+||.+-+..... ..+.+++. .+.|| |||+||.......+...+....+..|..... . ..
T Consensus 59 ~~~lrv~t~Nv~g~~~~~~------~~i~~~i~----~~~~D--Ii~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~~~~~ 126 (318)
T 1hd7_A 59 PATLKICSWNVDGLRAWIK------KKGLDWVK----EEAPD--ILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKE 126 (318)
T ss_dssp BCCEEEEEEECSSHHHHHH------TTHHHHHH----HHCCS--EEEEECCCCCC-----------CCCEEEEECC----
T ss_pred CCceEEEEEecCcchhhhh------hhHHHHHH----hhCCC--EEEEEEccCchhhccHHHHhcCCCceEEEecCCCCC
Confidence 3458999999986542211 11333443 45688 8899998654322222233333432332222 1 22
Q ss_pred CceeEEEEEecccccccCCCccccceeeeee-ecccCceEEEeeeEcCeEEEEEeccccccch---hHHHHHHHHHHHHH
Q psy3197 238 GTLHLAVYVRRHLIWFCSEPEEADYSVRAGS-AFRTKGAVAIGFTLFGSSFLFVTSHLTAHEE---RVKDRIDDVRRIVK 313 (459)
Q Consensus 238 ~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~-~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~---~~~~Rn~d~~~I~~ 313 (459)
+.-+++||+|.++.... .+++. .....|- .+...+ ..+.++|+|+.+... ..+.|.+++..|.+
T Consensus 127 g~~Gvailsr~~~~~~~---------~~~~~~~~~~~~r-~l~~~~--~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~ 194 (318)
T 1hd7_A 127 GYSGVGLLSRQCPLKVS---------YGIGDEEHDQEGR-VIVAEF--DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRK 194 (318)
T ss_dssp -CCCEEEEESSCCSEEE---------ESCSCGGGSSSSC-EEEEEC--SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHH
T ss_pred ccceEEEEEcCCceeEE---------ecCCCcccCCCCc-EEEEEc--CCEEEEEEEcCCCCCccccHHHHHHHHHHHHH
Confidence 33478999998753221 01111 1122332 222332 479999999987543 23456677676665
Q ss_pred hcCCCCCCCCCCCCCCcccCceeEEEeccccc
Q psy3197 314 SLDLPKELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 314 ~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
.+.- . .....+|++||||-
T Consensus 195 ~l~~---~----------~~~~pvIl~GDFN~ 213 (318)
T 1hd7_A 195 FLKG---L----------ASRKPLVLCGDLNV 213 (318)
T ss_dssp HHHH---H----------HHHSCEEEEEECSC
T ss_pred HHHh---c----------ccCCCEEEEeeCCC
Confidence 5410 0 00133889999994
No 29
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=98.23 E-value=4.9e-06 Score=78.56 Aligned_cols=120 Identities=14% Similarity=0.225 Sum_probs=61.0
Q ss_pred CCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEeecCceeEEEEEecccccccCCCccccceeeeeee-cccCce
Q psy3197 197 DHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSA-FRTKGA 275 (459)
Q Consensus 197 d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~~l~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~~-~gNKGa 275 (459)
.+.|| |+|+||.......+........+ |..+....-+.-+++|++|.++.... .++... ......
T Consensus 25 ~~~~D--ii~lQE~~~~~~~~~~~~~~~~g--y~~~~~~~~~~~G~ailsr~~~~~~~---------~~~~~~~~~~~r~ 91 (257)
T 2voa_A 25 ENKPD--ILCMQETKVENRKFPEADFHRIG--YHVVFSGSKGRNGVAIASLEEPEDVS---------FGLDSEPKDEDRL 91 (257)
T ss_dssp HHCCS--EEEEECCCCCGGGCCHHHHHTTT--CEEEEEEETTEEEEEEEESSCCEEEE---------ESCSSSSCCGGGE
T ss_pred hcCCC--EEEEEEeecchhhcCHHHhhhCC--CcEEEcCCCCccEEEEEEccChHHhe---------ecCCCCccccCcE
Confidence 45688 88999986543222111112233 43333223444579999998764211 011100 011123
Q ss_pred EEEeeeEcCeEEEEEeccccccch----hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEeccccc
Q psy3197 276 VAIGFTLFGSSFLFVTSHLTAHEE----RVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 276 V~i~~~i~~~s~~FVn~HLaA~~~----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
+.+. + ..+.++|+|+++... ..+.|.+.+..+.+.+.-.. .....++++||||-
T Consensus 92 l~~~--~--~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~------------~~~~p~Il~GDFN~ 149 (257)
T 2voa_A 92 IRAK--I--AGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTV------------DFRSFAVWCGDMNV 149 (257)
T ss_dssp EEEE--E--TTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHC------------CTTSCEEEEEECSC
T ss_pred EEEE--E--CCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHh------------cCCCCEEEEeeCCC
Confidence 4443 3 279999999987542 33445455555554431000 00123889999993
No 30
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.22 E-value=3.6e-06 Score=83.33 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=64.3
Q ss_pred eeEEEEEecccccccCCCccccceeeee-eecccCceEEEeeeEcCeEEEEEeccccccc------hhHHHHHHHHHHHH
Q psy3197 240 LHLAVYVRRHLIWFCSEPEEADYSVRAG-SAFRTKGAVAIGFTLFGSSFLFVTSHLTAHE------ERVKDRIDDVRRIV 312 (459)
Q Consensus 240 i~l~Vfvr~~~~~~is~v~~~~~~~g~G-~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~------~~~~~Rn~d~~~I~ 312 (459)
-++++++|.++....... ..-+.| ....+||.+.+.+.+.+..+.++|+||.+.. .....|..++..|.
T Consensus 120 ~G~~ilSr~Pi~~~~~~~----~~~~~~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~ 195 (317)
T 3i41_A 120 GGVAIVSKYPIKEKIQHV----FKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEIS 195 (317)
T ss_dssp CCCEEEESSCEEEEEEEE----CSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHH
T ss_pred CccEEEeCCCCccceeEE----CCCCCCcccccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHH
Confidence 477889998875432111 111111 1246899999999999999999999999864 34677999999888
Q ss_pred HhcCCCCCCCCCCCCCCcccCceeEEEeccccccccCChhH
Q psy3197 313 KSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDD 353 (459)
Q Consensus 313 ~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNyRi~~~~~~ 353 (459)
+.+.-.. . .....||++|||| ..+.+.
T Consensus 196 ~~i~~~~-~----------~~~~pvIl~GDfN---~~~~s~ 222 (317)
T 3i41_A 196 DFVKKKN-I----------PKDETVYIGGDLN---VNKGTP 222 (317)
T ss_dssp HHHHHHT-C----------CTTSCEEEEEECC---CCTTSH
T ss_pred HHHHHhc-c----------CCCCeEEEEeECC---CCCCCH
Confidence 8763100 0 0113488999999 555554
No 31
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.20 E-value=1.3e-07 Score=104.53 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=0.0
Q ss_pred cCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCC-CCCCCCCCCCCcccCceeEEEeccccccccCChhHHHHHHhcC
Q psy3197 283 FGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLP-KELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQ 361 (459)
Q Consensus 283 ~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~-~~~~~~~~~~~~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~ 361 (459)
.+..++++|+||.++......|..+...+++.+.-- +.... ...........||+||||| +.|.+.+..++..+
T Consensus 545 ~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~--~~~~~~~~~~pvIl~GDFN---s~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETS--HNFRQDIKKFPVLICGDFN---SYINSAVYELINTG 619 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcc--cccccccCCCceEEecccC---CCCCCcceEeeecC
Confidence 467899999999987554556777777777766210 00000 0000000122488999999 77777776666555
Q ss_pred C
Q psy3197 362 T 362 (459)
Q Consensus 362 ~ 362 (459)
.
T Consensus 620 ~ 620 (727)
T 4b8c_D 620 R 620 (727)
T ss_dssp -
T ss_pred C
Confidence 3
No 32
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.04 E-value=7.6e-06 Score=78.10 Aligned_cols=143 Identities=16% Similarity=0.209 Sum_probs=72.2
Q ss_pred ccCcCcchhhhhhccCCCCCCCCccccccCCCCCCCCCceeeeccCCCCCchhHHHHHHHhhcCCceeEEEEe--ecCce
Q psy3197 163 QRTPSYTDRILFKSRQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLEST--TLGTL 240 (459)
Q Consensus 163 ~R~psw~dRil~~~~~~~~~s~~dl~s~ll~~~~d~~pd~~vig~QE~~~~~~~w~~~l~~~L~~~y~~v~s~--~l~gi 240 (459)
.|+.+||.+-+..... ..+..++. ...|| |+|+||...........+.... +|...... .-+.-
T Consensus 4 l~i~s~Nv~g~~~~~~------~~l~~~i~----~~~~D--Iv~LQEt~~~~~~~~~~~~~~~--gy~~~~~~~~~~~~~ 69 (265)
T 3g91_A 4 LKIISWNVNGLRAVHR------KGFLKWFM----EEKPD--ILCLQEIKAAPEQLPRKLRHVE--GYRSFFTPAERKGYS 69 (265)
T ss_dssp EEEEEEECSCHHHHHH------HTHHHHHH----HHCCS--EEEEECCCSCGGGSCHHHHCCT--TCEEEEECBSSTTSC
T ss_pred cEEEEEEcCCchhhhh------hhHHHHHH----hcCCC--EEEEEeccccccccChhhhccc--CCcEEEccCCCCCcC
Confidence 5777888765543211 12333443 45688 8899998654332222222223 34333222 23334
Q ss_pred eEEEEEecccccccCCCccccceeeeeee-cccCc-eEEEeeeEcCeEEEEEeccccccchh---HHHHHHHHHHHHHhc
Q psy3197 241 HLAVYVRRHLIWFCSEPEEADYSVRAGSA-FRTKG-AVAIGFTLFGSSFLFVTSHLTAHEER---VKDRIDDVRRIVKSL 315 (459)
Q Consensus 241 ~l~Vfvr~~~~~~is~v~~~~~~~g~G~~-~gNKG-aV~i~~~i~~~s~~FVn~HLaA~~~~---~~~Rn~d~~~I~~~l 315 (459)
+++||+|.+...... +++.. ....| .+.+. ...+.++|+|++++... .+.|.+.+..+.+.+
T Consensus 70 Gvail~k~~~~~~~~---------~~~~~~~d~~gr~i~~~----~~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~ 136 (265)
T 3g91_A 70 GVAMYTKVPPSSLRE---------GFGVERFDTEGRIQIAD----FDDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDV 136 (265)
T ss_dssp CEEEEESSCCSEEEC---------CCSCHHHHSBSCEEEEE----CSSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecChHHhcc---------CCCCcccCCcCCEEEEE----eCCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHH
Confidence 678899876532211 11110 11223 22222 24788999999886543 333555555555443
Q ss_pred CCCCCCCCCCCCCCcccCceeEEEecccc
Q psy3197 316 DLPKELPCKHRHKDVTQNYDYVFWCGDLN 344 (459)
Q Consensus 316 ~f~~~~~~~~~~~~~~~~~d~vfw~GDLN 344 (459)
.--. .....++++||||
T Consensus 137 ~~~~------------~~~~~~ii~GDfN 153 (265)
T 3g91_A 137 NRER------------DSGRNVIICGDFN 153 (265)
T ss_dssp HHHH------------HTTCCEEEEEECC
T ss_pred HHHH------------cCCCCEEEECccc
Confidence 1000 0013488999999
No 33
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=97.56 E-value=9e-05 Score=76.04 Aligned_cols=160 Identities=14% Similarity=0.171 Sum_probs=87.0
Q ss_pred CCCCceeeeccCCCCCch--hHHHHHHHhhcCCceeEEEEe-----------ecCceeEEEEEecccccccCCCcc--c-
Q psy3197 197 DHLPDMVVIGTQESYPER--EDWEVSIQMTLGHSFVMLEST-----------TLGTLHLAVYVRRHLIWFCSEPEE--A- 260 (459)
Q Consensus 197 d~~pd~~vig~QE~~~~~--~~w~~~l~~~L~~~y~~v~s~-----------~l~gi~l~Vfvr~~~~~~is~v~~--~- 260 (459)
.+.|| |||+||+.... +.|...+. . .+|..+... .-.+.+.+||.|++....+..... +
T Consensus 73 ~~~pD--Ii~lQEv~~~q~~~~l~~~L~-~--~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~ 147 (398)
T 3ngq_A 73 NCDAD--IISLQEVETEQYFTLFLPALK-E--RGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQ 147 (398)
T ss_dssp HHCCS--EEEEEEEEHHHHHHTHHHHHH-H--TTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHH
T ss_pred hcCCC--EEEEecccHHHHHHHHHHHHH-h--CCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCC
Confidence 34678 88999985421 22433332 2 345544321 135789999999876544321100 0
Q ss_pred ---cceeeeeee---cccCc--eEEEeeeEc---------------CeEEEEEeccccccchhHHHHHHHHHHHHHhcC-
Q psy3197 261 ---DYSVRAGSA---FRTKG--AVAIGFTLF---------------GSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLD- 316 (459)
Q Consensus 261 ---~~~~g~G~~---~gNKG--aV~i~~~i~---------------~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~- 316 (459)
..+.|.+.+ +-.|. |+.+.|+.. +..++++|.||..+......|..|...|++.+.
T Consensus 148 ~~~~~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~ 227 (398)
T 3ngq_A 148 VAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKN 227 (398)
T ss_dssp HHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 000111111 11122 233344432 356999999999987777789999998888762
Q ss_pred CCCCCCCCCCCCCcccCceeEEEeccccccccCChhHHHHHHhcCCCC
Q psy3197 317 LPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFP 364 (459)
Q Consensus 317 f~~~~~~~~~~~~~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~ 364 (459)
+.+...............-.+|+||||| ..|.+.+-+++.+|..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~PvIl~GDFN---s~P~s~vy~~L~~G~v~ 272 (398)
T 3ngq_A 228 ILEKASSRPGSPTADPNSIPLVLCADLN---SLPDSGVVEYLSNGGVA 272 (398)
T ss_dssp HHCC-------------CCCEEEEEECS---CCTTSHHHHHHHHTEEE
T ss_pred HHHHhhcccccccccCCCCceEEEeeCC---CCCCCHHHHHHhcCCCC
Confidence 1000000000000000112489999999 88999888888877653
No 34
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=97.55 E-value=6.3e-05 Score=72.67 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=53.3
Q ss_pred ceeEEEEEecccccccCCCccccceeeeeeecccCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCC
Q psy3197 239 TLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLP 318 (459)
Q Consensus 239 gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~~~gNKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~ 318 (459)
-..++|.+|.++...+.. . .. ++..-..|++.++ +.+ +.|++.||.+... .+|.+....|.+.+.-.
T Consensus 95 ~~g~AIlSR~~~~~v~~l-~---~~---~~~~~~R~~l~i~--i~g--~~f~s~Hl~~~~~--~ea~~~v~~I~~~~~~~ 161 (261)
T 1sr4_B 95 RVNLAIVSRRQADEAFIV-H---SD---SSVLQSRPAVGIR--IGT--DVFFTVHALATGG--SDAVSLIRNIFTTFNSS 161 (261)
T ss_dssp CSCEEEEESSCCSEEEEE-C---CC---CCSSCCCCEEEEE--ETT--EEEEEEECCTTTT--TTHHHHHHHHHHHHHC-
T ss_pred ccceEEEEccchhceEEc-C---CC---CCCCcCcceEEEE--ECC--eEEEEeCCCCCCC--chHHHHHHHHHHHHHhc
Confidence 357889998754222100 0 00 1011267888885 566 9999999999852 34566667776654110
Q ss_pred CCCCCCCCCCCcccCceeEEEeccccccccCChhHHHHHHhc
Q psy3197 319 KELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQ 360 (459)
Q Consensus 319 ~~~~~~~~~~~~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~ 360 (459)
...+. ..+.-.+.+|||| ..+.+ +...+..
T Consensus 162 ~~~~~--------~~~~~~ii~GDFN---~~p~~-~~~~L~~ 191 (261)
T 1sr4_B 162 SSPPE--------RRVYSWMVVGDFN---RAPAN-LEVALRQ 191 (261)
T ss_dssp --CGG--------GGGCEEEEEEECS---SCHHH-HHHHHTT
T ss_pred ccCCc--------ccCCcEEEEeeCC---CChhH-HHHHhhc
Confidence 00000 0113478999999 54433 4445544
No 35
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=97.49 E-value=0.00026 Score=67.44 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCceeeeccCCCCCchhHHHHHHHhhc----CCceeEEEEeec----CceeEEEEEecccccccCCCccccceeeeee-e
Q psy3197 199 LPDMVVIGTQESYPEREDWEVSIQMTL----GHSFVMLESTTL----GTLHLAVYVRRHLIWFCSEPEEADYSVRAGS-A 269 (459)
Q Consensus 199 ~pd~~vig~QE~~~~~~~w~~~l~~~L----~~~y~~v~s~~l----~gi~l~Vfvr~~~~~~is~v~~~~~~~g~G~-~ 269 (459)
.|| |||+||+......-...+.+.| +..|..+.+... .+...+++.|.+.................|. .
T Consensus 31 ~~D--Iv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~~~~~~~~~~~~~ 108 (260)
T 2a40_B 31 RYD--IVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDS 108 (260)
T ss_dssp TCS--EEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHH
T ss_pred cCC--EEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCceeccCCCcCCCCCc
Confidence 477 8899998754221122344444 456766655443 3567778877664322111000000000011 1
Q ss_pred cccCceEEEeeeEc---CeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEeccccc
Q psy3197 270 FRTKGAVAIGFTLF---GSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 270 ~gNKGaV~i~~~i~---~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
+ ..+...+.|... +..|.++|+||.+.... ++.+.+..+++.+. ... ....+|++||||=
T Consensus 109 ~-~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~~--~q~~~l~~~~~~~~--~~~-----------~~~~vil~GDfN~ 171 (260)
T 2a40_B 109 F-SREPAVVKFSSHSTKVKEFAIVALHSAPSDAV--AEINSLYDVYLDVQ--QKW-----------HLNDVMLMGDFNA 171 (260)
T ss_dssp C-SSCCEEEEEECTTSSSSEEEEEECCCCGGGHH--HHHHHHHHHHHHHH--HHH-----------CCCCEEEEEECCC
T ss_pred e-eeCCEEEEEEeCCCCCceEEEEEecCCCCCcH--HHHHHHHHHHHHHH--HhC-----------CCCCEEEEecCCC
Confidence 2 255666777755 67999999999975432 22444444444331 000 0123889999993
No 36
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=97.46 E-value=0.00027 Score=67.19 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=37.3
Q ss_pred cCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEeccccc
Q psy3197 272 TKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNF 345 (459)
Q Consensus 272 NKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNy 345 (459)
..|++.+.+.. ..+.++|+|++.+.. .+.+.+.+..+...+. . ..++++||||=
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~-~~~~~~~l~~l~~~~~---~--------------~~~Ii~GDfN~ 130 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDP-IDPYLHRLGNILDRLR---G--------------ARVVICADTNA 130 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSC-SHHHHHHHHHHHHHTT---T--------------SCEEEEEECCC
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCc-hhHHHHHHHHHHHhcC---C--------------CcEEEEEeccc
Confidence 46777777654 568999999998764 3555666666655431 0 12889999993
No 37
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=95.87 E-value=0.016 Score=55.51 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=41.2
Q ss_pred cCceEEEeeeEcCeEEEEEeccccccchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcccCceeEEEeccccccccCCh
Q psy3197 272 TKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPR 351 (459)
Q Consensus 272 NKGaV~i~~~i~~~s~~FVn~HLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~d~vfw~GDLNyRi~~~~ 351 (459)
....+++++ + ...|.|.|+.|... .+|.+..+.|.+.+.- .+.. ....--.+++|||| ..|.
T Consensus 130 ~Rp~lgiri---~-~~~ff~tHa~a~~g--~da~a~v~~I~~~~~~---~~~~------~~~~~pwii~GDFN---r~P~ 191 (262)
T 2f1n_A 130 GRPLLGIRI---G-NDAFFTAHAIAMRN--NDAPALVEEVYNFFRD---SRDP------VHQALNWMILGDFN---REPA 191 (262)
T ss_dssp CCCEEEEEE---T-TEEEEEEECCSSSS--CSHHHHHHHHHHHHHT---CSSH------HHHTCEEEEEEECS---SCHH
T ss_pred CCceEEEEE---C-CEEEEEEEecCCCC--ccHHHHHHHHHHHHhc---Cccc------ccCCCcEEEEecCC---CCCc
Confidence 678888887 2 48899999999733 3477778888876521 1110 00001278999999 5555
Q ss_pred hH
Q psy3197 352 DD 353 (459)
Q Consensus 352 ~~ 353 (459)
+.
T Consensus 192 sl 193 (262)
T 2f1n_A 192 DL 193 (262)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 38
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=47.10 E-value=5.7 Score=36.30 Aligned_cols=13 Identities=46% Similarity=1.084 Sum_probs=11.3
Q ss_pred CccCCcceeceEE
Q psy3197 404 CSSDHKPVWGLYK 416 (459)
Q Consensus 404 ~~SDHkPV~a~f~ 416 (459)
..|||.||.+.|+
T Consensus 255 ~~SDH~pv~~~l~ 267 (268)
T 1ako_A 255 KPSDHAPVWATFR 267 (268)
T ss_dssp SCCSBCCEEEEEC
T ss_pred CCCCcccEEEEcc
Confidence 5799999999874
No 39
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=38.70 E-value=7.3 Score=36.06 Aligned_cols=13 Identities=38% Similarity=0.371 Sum_probs=11.1
Q ss_pred CCccCCcceeceE
Q psy3197 403 ICSSDHKPVWGLY 415 (459)
Q Consensus 403 i~~SDHkPV~a~f 415 (459)
...|||.||.+.|
T Consensus 247 ~~~SDH~PV~~~l 259 (260)
T 2a40_B 247 LAISDHYPVEVTL 259 (260)
T ss_dssp HHHCSBCCEEEEB
T ss_pred hhcCCCCeEEEEe
Confidence 4689999999876
No 40
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=35.24 E-value=11 Score=36.32 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=9.9
Q ss_pred CCccCCcceece
Q psy3197 403 ICSSDHKPVWGL 414 (459)
Q Consensus 403 i~~SDHkPV~a~ 414 (459)
...|||.||.|.
T Consensus 304 ~~~SDH~PV~a~ 315 (317)
T 3i41_A 304 NDFSDHYPIKAY 315 (317)
T ss_dssp CCSSSBCCEEEE
T ss_pred CCCCcccceecc
Confidence 358999999983
No 41
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=34.95 E-value=7.4 Score=40.32 Aligned_cols=16 Identities=44% Similarity=0.754 Sum_probs=13.6
Q ss_pred cCceeEEEeccccccc
Q psy3197 332 QNYDYVFWCGDLNFRV 347 (459)
Q Consensus 332 ~~~d~vfw~GDLNyRi 347 (459)
.+.+.||+=||||||=
T Consensus 375 ~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 375 QKSNLVIFKGDLNYRK 390 (471)
T ss_dssp TTCSEEEEEHHHHHHH
T ss_pred hhCcEEEEecchhhhh
Confidence 4578999999999983
No 42
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=30.76 E-value=16 Score=33.45 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.1
Q ss_pred CCCCCCceeeeccCC
Q psy3197 195 SLDHLPDMVVIGTQE 209 (459)
Q Consensus 195 ~~d~~pd~~vig~QE 209 (459)
.|||.|.+..++ ||
T Consensus 248 ~SDH~PV~a~~~-~~ 261 (267)
T 3g6s_A 248 LSDHNPQLADLE-LE 261 (267)
T ss_dssp CCSBCCEEEEEE-EC
T ss_pred CCCcccEEEEEE-ec
Confidence 379999988877 55
No 43
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=30.17 E-value=21 Score=33.55 Aligned_cols=44 Identities=7% Similarity=-0.096 Sum_probs=22.7
Q ss_pred ceeeeehhhhhh-hHHHHHHH----HhhhcccccccccCcceEEEecccccc
Q psy3197 47 SMLCLVLQSWTR-HYLTEIFI----SMYLEYERTNVTQNYDYVFWCGDLNFR 93 (459)
Q Consensus 47 ~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~d~vfw~GDlNfR 93 (459)
..+++++.||.. ..-.|.-+ ...+..-. ......++++||||-.
T Consensus 134 ~~~~v~~~Hl~~~~~~~R~~q~~~l~~~i~~~~---~~~~~pvIl~GDfN~~ 182 (298)
T 3mpr_A 134 FEFLFFNLHMDHIGKKARVESAFLVQEKMKELG---RGKNLPAILTGDFNVD 182 (298)
T ss_dssp CEEEEEEEECCSSCHHHHHHHHHHHHHHHHHTT---TTSCCCEEEEEECSSC
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCC
Confidence 468889999983 21122111 11111100 0023568999999954
No 44
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=28.02 E-value=28 Score=32.36 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=12.1
Q ss_pred cceEEEecccccccc
Q psy3197 81 YDYVFWCGDLNFRVT 95 (459)
Q Consensus 81 ~d~vfw~GDlNfRi~ 95 (459)
...++++||||-.-+
T Consensus 187 ~~pvIl~GDfN~~~~ 201 (301)
T 1zwx_A 187 DEIIFIGGDLNVNYG 201 (301)
T ss_dssp TSEEEEEEECCCCTT
T ss_pred CCeEEEEeeCCCCCC
Confidence 467999999997654
No 45
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=22.90 E-value=20 Score=37.10 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=14.2
Q ss_pred ccCcceEEEecccccc
Q psy3197 78 TQNYDYVFWCGDLNFR 93 (459)
Q Consensus 78 ~~~~d~vfw~GDlNfR 93 (459)
...++.||+=||||||
T Consensus 374 L~~S~LVIFKGDLNYR 389 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYR 389 (471)
T ss_dssp HTTCSEEEEEHHHHHH
T ss_pred HhhCcEEEEecchhhh
Confidence 4678999999999998
Done!