RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3197
(459 letters)
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling,
SGC stockholm, structural genomics CONS hydrolase; 1.90A
{Homo sapiens}
Length = 357
Score = 226 bits (578), Expect = 2e-70
Identities = 115/315 (36%), Positives = 168/315 (53%), Gaps = 49/315 (15%)
Query: 183 SPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHL 242
P L LP D+ D+ VIG QE +R +WE +Q TLG +V+L S G L++
Sbjct: 41 LPPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSAAHGVLYM 100
Query: 243 AVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVK 302
++++RR LIWFCSE E + + R S +TKGA+ I FT FG+SFLF+TSH T+ + +V
Sbjct: 101 SLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGKVA 160
Query: 303 DRIDDVRRIVKSLDLPKEL----PCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWF 358
+R+ D R V++L LP+ + P + DVT +D VFW GD NFR++ R V
Sbjct: 161 ERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALL 220
Query: 359 KQQTFPLPPTMPMQLDCQLNKSLSEGSVFRG----------------------------- 389
Q P + +Q D QL + + +GS+F+G
Sbjct: 221 CQGLVVDVPAL-LQHD-QLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRT 278
Query: 390 --------------GEIQCLHYSSVPSICSSDHKPVWGLYKCSVRPGTDAVPLNAGAFKR 435
G+I + YSS P I +SDH+PV+GL++ VRPG D +PL AG F R
Sbjct: 279 PSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRDNIPLAAGKFDR 338
Query: 436 DIYLEAIKKRATLYN 450
++YL IK+R + ++
Sbjct: 339 ELYLLGIKRRISAHH 353
Score = 133 bits (336), Expect = 2e-35
Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 75 TNVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVF 134
+VT +D VFW GD NFR++ R V Q P + +Q D QL + + +GS+F
Sbjct: 190 ADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPAL-LQHD-QLIREMRKGSIF 247
Query: 135 RGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPGSPLELSSLF-LP 193
+GF+E I F P++K+D G +D++ KQRTPSYTDR+L++SR + P+ SS +
Sbjct: 248 KGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIK 307
Query: 194 DSLDHLP 200
S DH P
Sbjct: 308 TS-DHRP 313
Score = 44.2 bits (104), Expect = 5e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 13 NALLGASELDKALPNRDIHIYVGTWNMNGQA 43
ALLGA EL + P+R++ ++V TWNM GQ
Sbjct: 9 GALLGADELARYFPDRNVALFVATWNMQGQK 39
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling,
structural genomics consortium stockholm, magnesium
binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB:
3nr8_B*
Length = 316
Score = 186 bits (473), Expect = 2e-55
Identities = 61/299 (20%), Positives = 104/299 (34%), Gaps = 71/299 (23%)
Query: 184 PLELSSLFLPDSLDHL---------PDMVVIGTQESYPEREDWEVSIQMTLGH----SFV 230
P ++S F L D+ V GTQE+ +W ++ L +
Sbjct: 23 PKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYR 82
Query: 231 MLESTTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFV 290
+ +L + +AV V+ S + + KGAV + F G+SF FV
Sbjct: 83 PIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFV 142
Query: 291 TSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQP 350
HLT+ E+ R + I++ L L + D++ + ++FW GDLN+R+
Sbjct: 143 NCHLTSGNEKTARRNQNYLDILRLLSLGDR---QLNAFDISLRFTHLFWFGDLNYRLDMD 199
Query: 351 RDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRG--------------------- 389
+++++ ++ F P+ QLN + VF
Sbjct: 200 IQEILNYISRKEFE-----PLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDT 254
Query: 390 -----------------------------GEIQCLHYSSVPSICSSDHKPVWGLYKCSV 419
I C Y I +SDH PV+G ++ V
Sbjct: 255 YAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313
Score = 132 bits (334), Expect = 2e-35
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 76 NVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFR 135
+++ + ++FW GDLN+R+ +++++ ++ F P+ QLN + VF
Sbjct: 178 DISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFE-----PLLRVDQLNLEREKHKVFL 232
Query: 136 GFEEGPITFPPTFKYDPGTCHF-------DTSHKQRTPSYTDRILFKSRQRPPGSPLELS 188
F E I+FPPT++Y+ G+ T + PS+ DRIL+KS
Sbjct: 233 RFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYG 292
Query: 189 SLFLPDSL--DHLP 200
D + DH P
Sbjct: 293 C--TDDIVTSDHSP 304
Score = 32.9 bits (75), Expect = 0.21
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 28 RDIHIYVGTWNMNGQAEQQSMLCLVLQSW 56
I +++GTWNM ++ + SW
Sbjct: 6 DMISVFIGTWNMGSVPPPKN-----VTSW 29
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas;
INPP5BA,phosphoinositide 5-phosphatase, inositol
signalling, phosphatase, magnesium; HET: PIF; 2.40A
{Homo sapiens} PDB: 3n9v_A
Length = 313
Score = 176 bits (449), Expect = 6e-52
Identities = 61/292 (20%), Positives = 100/292 (34%), Gaps = 63/292 (21%)
Query: 183 SPLELSSLFLPDSLDHLPDMVVIGTQE-----------SYPEREDWEVSIQMTLGH--SF 229
L PD+ +G QE P+ E+W ++ L +
Sbjct: 22 PKECLRLWLSNG--IQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKY 79
Query: 230 VMLESTTLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLF 289
++ L + L +YV++ + SE E KG VAI F +S
Sbjct: 80 AKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICV 139
Query: 290 VTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQ 349
V SHL AH E + R D + I + + N+D + W GDLN+R+ +
Sbjct: 140 VNSHLAAHIEEYERRNQDYKDICSRMQFCQP--DPSLPPLTISNHDVILWLGDLNYRIEE 197
Query: 350 -PRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVF--------------------- 387
+ V +++ F + + QL ++ +VF
Sbjct: 198 LDVEKVKKLIEEKDFQM-----LYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSD 252
Query: 388 -------------------RGGEIQCLHYSSVPSICSSDHKPVWGLYKCSVR 420
+G I L Y S ++ +SDHKPV ++ VR
Sbjct: 253 DWDTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVR 304
Score = 126 bits (318), Expect = 4e-33
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 58 RHYLTEIFISMYLEYERTNVTQNYDYVFWCGDLNFRVTQ-PRDDVIHWFKQQTFPLPPTM 116
+ + + N+D + W GDLN+R+ + + V +++ F +
Sbjct: 159 KDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQM---- 214
Query: 117 PMQLDCQLNKSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKS 176
+ QL ++ +VF GF EG +TF PT+KYD G+ +DTS K R P++ DRIL+K
Sbjct: 215 -LYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEKCRAPAWCDRILWKG 273
Query: 177 R 177
+
Sbjct: 274 K 274
Score = 34.0 bits (78), Expect = 0.078
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 28 RDIHIYVGTWNMNGQAEQQSMLCLVLQSW 56
++ + GT+N+NGQ+ ++ L+ W
Sbjct: 6 QNFRFFAGTYNVNGQSPKEC-----LRLW 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB:
1i9y_A*
Length = 347
Score = 163 bits (415), Expect = 1e-46
Identities = 72/336 (21%), Positives = 115/336 (34%), Gaps = 83/336 (24%)
Query: 150 YDPGTCHFDTSHKQRTPSYTD----RILFKS----RQRPPGSPLELSSLFLPDSLDHLPD 201
YDP + + ++R +++ +I S L + P++ L D
Sbjct: 1 YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTK---LENWLFPEN-TPLAD 56
Query: 202 MVVIGTQESYP------------EREDWEVSIQMTLGH------SFVMLESTTLGTLHLA 243
+ V+G QE +R +WE ++ L +V L S L L
Sbjct: 57 IYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALM 116
Query: 244 VYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKD 303
++ + + E G KGAVAI F + F+TSHL A +
Sbjct: 117 IFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDE 176
Query: 304 RIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTF 363
R D R I L + N+DYV W GD N+R++ ++V+ Q
Sbjct: 177 RDHDYRTIASGLRFRR--------GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKL 228
Query: 364 PLPPTMPMQLDCQLNKSLSEGSVFRG---------------------------------- 389
+ QLNK + G VF
Sbjct: 229 SY-----LFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTD 283
Query: 390 -----GEIQCLHYSSVPSICSSDHKPVWGLYKCSVR 420
GE+ Y SVP + SDH+P++ Y+ ++
Sbjct: 284 RILYRGELVPHSYQSVP-LYYSDHRPIYATYEANIV 318
Score = 133 bits (335), Expect = 3e-35
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 10/135 (7%)
Query: 66 ISMYLEYERTNVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLN 125
I+ L + R N+DYV W GD N+R++ ++V+ Q + QLN
Sbjct: 184 IASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSY-----LFEYDQLN 238
Query: 126 KSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPGSPL 185
K + G VF F E PITFPPT+K+D GT +DTS K R P++TDRIL++ P
Sbjct: 239 KQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELV----PH 294
Query: 186 ELSSLFLPDSLDHLP 200
S+ L S DH P
Sbjct: 295 SYQSVPLYYS-DHRP 308
Score = 33.8 bits (77), Expect = 0.10
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 28 RDIHIYVGTWNMNGQAEQQSMLCLVLQSWTRHY 60
+++ I+V ++N+NG + + + T
Sbjct: 23 KNVKIFVASYNLNGCSATTKLENWLFPENTPLA 55
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport
protein; HET: HEM; 1.30A {Cimex lectularius} SCOP:
d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Length = 282
Score = 149 bits (377), Expect = 7e-42
Identities = 48/284 (16%), Positives = 88/284 (30%), Gaps = 69/284 (24%)
Query: 183 SPLELSSLFLPDSLDHLPDMVVIGTQE-----SYPEREDWEVSIQMTLGH--SFVMLEST 235
+P L L +S PD++ + Q P++ V +L + L++T
Sbjct: 21 APTNLEELLGLNS-GETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNT 79
Query: 236 TLGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLT 295
T+ L VY + + E + + G + FT++ F F TS ++
Sbjct: 80 ITETMGLTVYCLEKHLDQNTLKNET--IIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMS 137
Query: 296 AHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVI 355
+ + + + D++FW GDLN RV
Sbjct: 138 DEDVTSTNTKYA-------------YDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAK 184
Query: 356 HWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRG-------------------------- 389
Q + QL K+ E +F G
Sbjct: 185 SLVDQNNID-----GLMAFDQLKKA-KEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSAT 238
Query: 390 --------------GEIQCLHYSSVPSICSSDHKPVWGLYKCSV 419
IQ L Y+S+ + ++H+PV ++ ++
Sbjct: 239 PSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282
Score = 125 bits (315), Expect = 5e-33
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 73 ERTNVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGS 132
+ + D++FW GDLN RV Q + QL K+ E
Sbjct: 155 DYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNID-----GLMAFDQLKKA-KEQK 208
Query: 133 VFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPGSPLELSSLFL 192
+F G+ E +TF PT+K+ P T +D S TPS+TDR L+KS PL +S L
Sbjct: 209 LFDGWTEPQVTFKPTYKFKPNTDEYDLS---ATPSWTDRALYKSGTGKTIQPLSYNS--L 263
Query: 193 PDSL--DHLP 200
+ +H P
Sbjct: 264 TNYKQTEHRP 273
Score = 36.0 bits (83), Expect = 0.018
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 26 PNRDIHIYVGTWNMNGQA 43
P + ++ +WN +
Sbjct: 3 PPAQLSVHTVSWNSGHER 20
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 4e-10
Identities = 76/444 (17%), Positives = 135/444 (30%), Gaps = 148/444 (33%)
Query: 4 NYLQGRATVNALL---GASELDKALPNRDIHIYV--GTWNMNGQAEQQSMLCLVLQSWTR 58
NY+ R S L +A+ + + G GQ T
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-----GQGN------------TD 167
Query: 59 HYLTEIFISMYLEYERTNVTQNYDYVFWCGD-LNFRVTQPRD---------DVIHWFKQ- 107
Y E+ +Y Y V D + + + L+ + D +++ W +
Sbjct: 168 DYFEEL-RDLYQTY-HVLVG---DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 108 QTFP-------LPPTMPM----QLDCQLN--KSLSEGSVFRGFEEGPITFPPTFKYDPGT 154
P +P + P+ QL + K L GF P K G
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL-------GFT--PGELRSYLK---GA 270
Query: 155 CHFDTSHKQRT------------PSYTD------RILF----KSRQRPPGSPLELSSLFL 192
T H Q S+ +LF + + P L L
Sbjct: 271 ----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP--NTSLPPSIL 324
Query: 193 PDSLDH---LPD-M-VVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVY-V 246
DSL++ +P M + +E + + T H L + + +++
Sbjct: 325 EDSLENNEGVPSPMLSISN-----LTQEQVQDYVNKTNSH----LPAG--KQVEISLVNG 373
Query: 247 RRHLIWFCSEPEEADYSVRAGSAFRTKGAVA------IGFT----LFGSSFLFVTS--HL 294
++L+ S P ++ Y + R A + I F+ F + FL V S H
Sbjct: 374 AKNLV--VSGPPQSLYGLN--LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH- 428
Query: 295 TAHEERVKDRID-DVRRIVKSLDLPKEL--PCKHRH--KDVTQNYDYVFWCGDLNFR--- 346
+ D I+ D+ + S + K++ P D+ + G ++ R
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFN-AKDIQIPVYDTFDGSDL-RVLS-----GSISERIVD 481
Query: 347 --VTQPRDDVIHWFKQQTFPLPPT 368
+ P + W + T T
Sbjct: 482 CIIRLP----VKW--ETTTQFKAT 499
Score = 52.4 bits (125), Expect = 2e-07
Identities = 57/392 (14%), Positives = 100/392 (25%), Gaps = 170/392 (43%)
Query: 127 SLSEGSVFRGFEEGPITFP-PTFKYDPGTCH---FDTSHKQRTPSYTDRILFKSRQRPPG 182
+LS GS E PT + + F+ + T + P
Sbjct: 10 TLSHGS----LE---HVLLVPTASFFIASQLQEQFNKILPEPTEGFAA-------DDEPT 55
Query: 183 SPLELSSLFLPDSLDHLPDMVVIGTQESYPER-----EDWEVSIQMTLG----HSFV--- 230
+P EL F L ++ +V + + ++E L H+
Sbjct: 56 TPAELVGKF----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY---LEGNDIHALAAKL 108
Query: 231 -MLESTTLGTLHLAV--YVR-RHLIWFCSEPEEADYSVRAGSA-FR--TKGAVAIGFTLF 283
TTL + Y+ R + P + ++ SA FR +G + +F
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMA---KRP----FDKKSNSALFRAVGEGNAQL-VAIF 160
Query: 284 G-------------------SSFL--FVTSHLTAHEERVKDRIDDVRRIVKSLDL----- 317
G + + E ++ +D + + L++
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 318 -PKELPCKHRHKD---------------VTQ--NYDYVFWCGDLNFRVTQPRD------- 352
P P D V Q +Y V L F + R
Sbjct: 221 NPSNTP------DKDYLLSIPISCPLIGVIQLAHY-VVT-AKLLGFTPGELRSYLKGATG 272
Query: 353 ---DVI---------HW--FK-----------------QQTFP---LPPTM--------- 369
++ W F + +P LPP++
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 370 ----PM---------QLDC---QLNKSLSEGS 385
PM Q+ + N L G
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 63/452 (13%), Positives = 110/452 (24%), Gaps = 146/452 (32%)
Query: 14 ALLGASELDKAL--PNRDIHIYVGTWNMNGQAEQ--QSMLCLVLQ---SW------TRHY 60
++L E+D + + W + + E+ Q + VL+ + T
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 61 LTEIFISMYLEY-ERT----------NVT---------------QNYDYVFWCGDL---- 90
+ MY+E +R NV+ + V G L
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 91 ---------NFRVTQPRDDVIHW--FKQQTFPLPPTMPMQ-LDCQLNKSLSEG-----SV 133
+++V D I W K P +Q L Q++ + + ++
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 134 FRGFEEGPITFPPTFK--------------YDPGTC-HFD-------TSHKQRTPSYTDR 171
K + F+ T+ R TD
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFKQVTDF 280
Query: 172 ILFKSRQRPPGSP----------LELSSLFLPDSLDHLPDMV---------VIG------ 206
+ + L +L LP V +I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 207 --TQESYPEREDWEVS--IQMTLG--------HSFVML----EST--TLGTLHLAVYVRR 248
T +++ +++ I+ +L F L S L L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL------ 394
Query: 249 HLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDV 308
IWF + V + V S E +VK +
Sbjct: 395 --IWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISI-----PSIYLELKVKLENEYA 444
Query: 309 --RRIVKSLDLPKELPCKHRHKDVTQNYDYVF 338
R IV ++PK Y Y
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Score = 36.4 bits (83), Expect = 0.020
Identities = 46/345 (13%), Positives = 92/345 (26%), Gaps = 132/345 (38%)
Query: 14 ALLGASELDKALPNRDIHIYVGTWNMNGQAEQQSMLCLVLQSWTRHY----LTEIFISMY 69
+++ S I + TW +W +H LT I I
Sbjct: 331 SIIAES----------IRDGLATW----------------DNW-KHVNCDKLTTI-IESS 362
Query: 70 LEYERTNVTQNYDY----VFWCGDLNFRVTQPRDDV--------IHWFKQQTFPLPPTMP 117
L + + VF + WF + +
Sbjct: 363 LNVLEPAEYRKM-FDRLSVF------------PPSAHIPTILLSLIWFD-----VIKSDV 404
Query: 118 MQLDCQL-NKSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKS 176
M + +L SL V + +E I+ P + + + K R +
Sbjct: 405 MVVVNKLHKYSL----VEKQPKESTISIP--------SIYLELKVKLENEYALHRSIVDH 452
Query: 177 RQRPPGSPLELSSLFLPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTT 236
P + +P LD Y +GH +E
Sbjct: 453 YNIPKTFDSDD---LIPPYLD------------QY---------FYSHIGHHLKNIEHPE 488
Query: 237 LGTLHLAVYVRRHLIWFCSEPEEADYS-----VRA-GSAFRTKGAVA---IGFTLFGSSF 287
TL V++ D+ +R +A+ G++ +
Sbjct: 489 RMTLFRMVFL--------------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-- 532
Query: 288 LFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQ 332
++ + +E V +D + +I ++L ++ D+ +
Sbjct: 533 -YICDNDPKYERLVNAILDFLPKIEENL-------ICSKYTDLLR 569
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Length = 301
Score = 37.0 bits (85), Expect = 0.010
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 269 AFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHK 328
KG + G + + +H A + + R + ++ + K+ K
Sbjct: 127 RLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPK 186
Query: 329 DVTQNYDYVFWCGDLNFR 346
D + +F GDLN
Sbjct: 187 D-----EIIFIGGDLNVN 199
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A*
3k55_A
Length = 317
Score = 35.1 bits (80), Expect = 0.038
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 269 AFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHK 328
KG V G + + +H + + R D R + ++ + K+ K
Sbjct: 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPK 205
Query: 329 DVTQNYDYVFWCGDLNFR 346
D + V+ GDLN
Sbjct: 206 D-----ETVYIGGDLNVN 218
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Length = 306
Score = 34.7 bits (79), Expect = 0.051
Identities = 19/175 (10%), Positives = 46/175 (26%), Gaps = 21/175 (12%)
Query: 200 PDMVVIGTQE--SYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVRRHLIWFCS-- 255
D V+ E + +++ + +L ++ +
Sbjct: 46 QD--VVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGV 103
Query: 256 ---------EPEEADYSVRAGS-AFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRI 305
E + ++ G KG V + +HL A +
Sbjct: 104 AIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTS 163
Query: 306 DDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQ 360
R + ++ + K+ + +YV GD+N ++ +
Sbjct: 164 PASVRTNQLKEIQDFIKNKNIPNN-----EYVLIGGDMNVNKINAENNNDSEYAS 213
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein;
alpha-beta protein, structural genomics, PSI-2; 2.50A
{Bacteroides vulgatus atcc 8482}
Length = 267
Score = 33.4 bits (76), Expect = 0.11
Identities = 28/178 (15%), Positives = 44/178 (24%), Gaps = 28/178 (15%)
Query: 196 LDHLPDMVVIGTQE-SYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVY-------VR 247
DH D ++G QE + + +D + G + T G Y +
Sbjct: 35 KDHELD--IVGMQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLD 92
Query: 248 RHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDD 307
+ W P+ R G F+ V +H E R
Sbjct: 93 SNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGEEA--RRQS 150
Query: 308 VRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPL 365
I + KE+ + GD N D F +
Sbjct: 151 ALLI---IRKIKEIVGER----------PAVVTGDFN---VTDASDAYETITTNEFVM 192
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.20
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 185 LELSSL--FLPDSLDHLPDMVVIGTQE 209
L+ +SL + DS P + + T E
Sbjct: 25 LQ-ASLKLYADDS---APALAIKATME 47
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP;
2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A
Length = 496
Score = 29.5 bits (65), Expect = 2.4
Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 22/147 (14%)
Query: 29 DIHIYV--GTWNMNGQAEQQSMLCLVLQSWTRHYLTEIFISMYLEYERTNVTQNYDYVFW 86
+H Y G W G A + T + + +++++ T + D
Sbjct: 238 SLHYYTVPGPWEKKGPATGFT---------TDEWWVTLKKALFMDRLVTKHSAIMDVY-- 286
Query: 87 CGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFEE-----GP 141
D + R+ D+ W+ + P + Q + +L G+ F
Sbjct: 287 --DPDKRIDLIVDEWGTWYDVEPGTNPGFLYQQNS--IRDALVAGATLHIFHRHCDRVRM 342
Query: 142 ITFPPTFKYDPGTCHFDTSHKQRTPSY 168
+ TP+Y
Sbjct: 343 ANIAQLVNVLQSVILTEGERMLLTPTY 369
>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A
{Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3
Length = 357
Score = 28.2 bits (62), Expect = 6.5
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 324 KHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQ 376
HR K+V +++ G++N + + + +F + P M ++
Sbjct: 40 THRSKNV-----HLYRQGEINLILNNEPNSIASYFAAEHGPSVCGMAFRVKDS 87
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest
center for structural genomics; 2.99A {Leptotrichia
buccalis c-1013-b}
Length = 266
Score = 27.9 bits (62), Expect = 7.6
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 24/99 (24%)
Query: 246 VRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRI 305
+ S R V+I G F + H+ +D
Sbjct: 104 KAEDEFYCTFAQSVRTISAR--------RIVSITINYEGQDIEFYSCHMNLPNCETEDMG 155
Query: 306 DDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLN 344
+++ I+ QN + GD N
Sbjct: 156 KNIQTILNRT----------------QNSNLKILMGDFN 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.435
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,110,279
Number of extensions: 419293
Number of successful extensions: 846
Number of sequences better than 10.0: 1
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 39
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)