RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3197
(459 letters)
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 131 bits (331), Expect = 3e-35
Identities = 73/336 (21%), Positives = 115/336 (34%), Gaps = 83/336 (24%)
Query: 150 YDPGTCHFDTSHKQRTPSYTD----RILFKS----RQRPPGSPLELSSLFLPDSLDHLPD 201
YDP + + ++R +++ +I S L + P++ L D
Sbjct: 1 YDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTK---LENWLFPEN-TPLAD 56
Query: 202 MVVIGTQE------------SYPEREDWEVSIQ------MTLGHSFVMLESTTLGTLHLA 243
+ V+G QE +R +WE ++ T G +V L S L L
Sbjct: 57 IYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALM 116
Query: 244 VYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKD 303
++ + + E G KGAVAI F + F+TSHL A +
Sbjct: 117 IFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYDE 176
Query: 304 RIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTF 363
R D R I L + N+DYV W GD N+R++ ++V+ Q
Sbjct: 177 RDHDYRTIASGLRFRR--------GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKL 228
Query: 364 PLPPTMPMQLDCQLNKSLSEGSVFRG---------------------------------- 389
QLNK + G VF
Sbjct: 229 SYLFE-----YDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTD 283
Query: 390 -----GEIQCLHYSSVPSICSSDHKPVWGLYKCSVR 420
GE+ Y SVP + SDH+P++ Y+ ++
Sbjct: 284 RILYRGELVPHSYQSVP-LYYSDHRPIYATYEANIV 318
Score = 106 bits (264), Expect = 5e-26
Identities = 46/127 (36%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 54 QSWTRHYLTEIFISMYLEYERTNVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLP 113
++ I+ L + R N+DYV W GD N+R++ ++V+ Q
Sbjct: 172 TNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYL 231
Query: 114 PTMPMQLDCQLNKSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRIL 173
QLNK + G VF F E PITFPPT+K+D GT +DTS K R P++TDRIL
Sbjct: 232 FE-----YDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRIL 286
Query: 174 FKSRQRP 180
++ P
Sbjct: 287 YRGELVP 293
Score = 32.5 bits (73), Expect = 0.087
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 28 RDIHIYVGTWNMNGQAEQQSMLCLVLQSW 56
+++ I+V ++N+NG + L++W
Sbjct: 23 KNVKIFVASYNLNGCSATTK-----LENW 46
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 90.5 bits (223), Expect = 6e-21
Identities = 45/283 (15%), Positives = 81/283 (28%), Gaps = 69/283 (24%)
Query: 184 PLELSSLFLPDSLDHLPDMVVIGTQE------SYPEREDWEVSIQMTLG-HSFVMLESTT 236
P L L +S PD++ + Q + + Q L + L++T
Sbjct: 20 PTNLEELLGLNS-GETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTI 78
Query: 237 LGTLHLAVYVRRHLIWFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTA 296
T+ L VY + + E + G + FT++ F F TS ++
Sbjct: 79 TETMGLTVYCLEKHLDQNTLKNETIIVT--VDDQKKSGGIVTSFTIYNKRFSFTTSRMSD 136
Query: 297 HEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIH 356
+ + + D++FW GDLN RV
Sbjct: 137 EDVTSTNTKYAYDTR-------------LDYSKKDDPSDFLFWIGDLNVRVETNATHAKS 183
Query: 357 WFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRG--------------------------- 389
Q + + K E +F G
Sbjct: 184 LVDQNN------IDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATP 237
Query: 390 -------------GEIQCLHYSSVPSICSSDHKPVWGLYKCSV 419
IQ L Y+S+ + ++H+PV ++ ++
Sbjct: 238 SWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 280
Score = 67.0 bits (162), Expect = 5e-13
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 68 MYLEYERTNVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKS 127
+ + D++FW GDLN RV Q + + K
Sbjct: 148 YDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNN------IDGLMAFDQLKK 201
Query: 128 LSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQRPPGSPLEL 187
E +F G+ E +TF PT+K+ P T +D S TPS+TDR L+KS PL
Sbjct: 202 AKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLS---ATPSWTDRALYKSGTGKTIQPLSY 258
Query: 188 SSLFLPDSLDHLP 200
+SL +H P
Sbjct: 259 NSLTNYKQTEHRP 271
Score = 31.1 bits (69), Expect = 0.21
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 26 PNRDIHIYVGTWNMNGQ 42
P + ++ +WN +
Sbjct: 1 PPAQLSVHTVSWNSGHE 17
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 31.9 bits (70), Expect = 0.16
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 8/147 (5%)
Query: 59 HYLTEIFISMYLEYERTNVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPM 118
+ + ++ + N +YV GD+N ++ + L ++P
Sbjct: 159 ASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPS 218
Query: 119 QLDCQLNKSLSEGSVFRGFEEGPITFPPTFKYDPGTCHFDTSHKQRTPSYTDRILFKSRQ 178
+ + + P D + S PSY + + + +
Sbjct: 219 YTGHT----ATWDATTNSIAKYNFPDSPAEYLD----YIIASKDHANPSYIENKVLQPKS 270
Query: 179 RPPGSPLELSSLFLPDSLDHLPDMVVI 205
D DH P I
Sbjct: 271 PQWTVTSWFQKYTYNDYSDHYPVEATI 297
Score = 29.6 bits (64), Expect = 0.69
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 5/107 (4%)
Query: 269 AFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHK 328
KG V + +HL A + R +
Sbjct: 121 NLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRT-----NQLKEIQDFIKN 175
Query: 329 DVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDC 375
N +YV GD+N ++ + L ++P
Sbjct: 176 KNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGH 222
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 30.3 bits (66), Expect = 0.46
Identities = 20/165 (12%), Positives = 41/165 (24%), Gaps = 11/165 (6%)
Query: 197 DHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVRRHLIWFCSE 256
++ +E YP + + + + L +AV + ++
Sbjct: 52 TSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQH 111
Query: 257 PEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLD 316
KG + G + + +H A + + R
Sbjct: 112 I---FQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRA----- 163
Query: 317 LPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQ 361
+ K + +F GDLN D H +
Sbjct: 164 EQMQEIQTFIAKKNIPKDEIIFIGGDLNVN---YGTDEYHDMLKL 205
Score = 29.9 bits (65), Expect = 0.61
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 21/126 (16%)
Query: 79 QNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGFE 138
+ +F GDLN D H + ++ + ++
Sbjct: 179 PKDEIIFIGGDLNVN---YGTDEYHDMLKL-------------LNVSSPANFNGQMATWD 222
Query: 139 EGPITFPPTFKYDPGTCHFD----TSHKQRTPSYTDRILFKSRQRPPGSPLELSSLFLPD 194
+ + D + R S+ +++L + + +
Sbjct: 223 PTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDF 282
Query: 195 SLDHLP 200
S DH P
Sbjct: 283 S-DHYP 287
>d2busa_ g.68.1.1 (A:) Seminal plasma inhibitor IIa {Cow (Bos
taurus) [TaxId: 9913]}
Length = 57
Score = 25.6 bits (56), Expect = 2.7
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 389 GGEIQCLHYSSVPSICSSDHKPVWG 413
G ++ C + C+ + P G
Sbjct: 2 GAQVDCAEFKDPKVYCTRESNPHCG 26
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 27.2 bits (60), Expect = 3.3
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 292 SHLTAHEERVKDRIDDVRRIVKSLDLPKELPCKHRHKDVTQNYD 335
SH + E RI ++R ++ + + + +
Sbjct: 36 SHGD-YAE-HGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDK 77
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 27.3 bits (59), Expect = 3.6
Identities = 26/231 (11%), Positives = 55/231 (23%), Gaps = 41/231 (17%)
Query: 192 LPDSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVRRHLI 251
P + ++ + + + + + G ++LA+ R
Sbjct: 48 PPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRAD 107
Query: 252 WFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTA----HEERVKDRIDD 307
+ F T+H A + + + +
Sbjct: 108 EVFVLSPVRQGGRPLLGIR-------------IGNDAFFTAHAIAMRNNDAPALVEEVYN 154
Query: 308 VRRIVKSLDLPKELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPP 367
R + GD N ++ ++ + + P
Sbjct: 155 FFRDSRDPVHQAL---------------NWMILGDFNREPADLEMNLTVPVRRASEIISP 199
Query: 368 TMP-----MQLDCQLNKSLSEGSVFRGGEIQC-LHYSSVPSICSSDHKPVW 412
LD + FR +Q + Y + + SSDH PV
Sbjct: 200 AAATQTSQRTLDYAV---AGNSVAFRPSPLQAGIVYGARRTQISSDHFPVG 247
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 27.3 bits (59), Expect = 3.9
Identities = 26/219 (11%), Positives = 47/219 (21%), Gaps = 34/219 (15%)
Query: 200 PDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVRRHLIWFCSEPEE 259
+ +I QE Y + + GT+ A+ V H +
Sbjct: 29 AAIALI--QEPYVGGAKSMKGFRGVRVFQST---AQGDGTVKAAIAVFDHDL-------- 75
Query: 260 ADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVKDRIDDVRRIVKSLDLPK 319
V T V +G V+ + + I L+ K
Sbjct: 76 ---DVIQYPQLTTNNIVVVGIRTRAWEITLVSYYFEPD-----------KPIESYLEQIK 121
Query: 320 ELPCKHRHKDVTQNYDYVFWCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNK 379
+ K K + D + R D + + +
Sbjct: 122 RVERKMGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIR 181
Query: 380 SLSEGS-------VFRGGEIQCLHYSSVPSICSSDHKPV 411
+ + SSDH +
Sbjct: 182 GGKRYQSRVDVTFCTEDMLDLIDGWRVDEDLVSSDHNGM 220
>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli
[TaxId: 562]}
Length = 233
Score = 26.8 bits (59), Expect = 5.3
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 337 VFWCGDLNFRVTQPR---DDVIHWFKQQTFPLPPTMPMQLDCQLNKSLSEGSVFRGGEIQ 393
+F G+ +V+QPR + + F L ++ G V ++
Sbjct: 111 IFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQ-NTGKVGWLYSVIAPGKVSADAPLE 169
Query: 394 CLHYSSVPSI 403
+ S ++
Sbjct: 170 LVSRVSDVTV 179
>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752
{Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 26.7 bits (58), Expect = 5.5
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 20/149 (13%)
Query: 274 GAVAIGFTLFGSSFLFVTSHLTAH----------EERVKDRIDDVRRIVKSLDLPKELPC 323
GA ++ F L + T L+ E R+ R+ V+ L+ P ++
Sbjct: 9 GAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELNSPVKIVK 68
Query: 324 KHRHKDVTQNYDYVF---WCGDLNFRVTQPRDDVIHWFKQQTFPLPPTMPMQLDCQLNKS 380
+ D++ + D + + + + + Q
Sbjct: 69 TSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQ-------E 121
Query: 381 LSEGSVFRGGEIQCLHYSSVPSICSSDHK 409
L+ S + I K
Sbjct: 122 LNMVSTYTYVLSSYPDMKLALEIAEKMKK 150
>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 369
Score = 26.4 bits (58), Expect = 7.6
Identities = 23/155 (14%), Positives = 40/155 (25%), Gaps = 17/155 (10%)
Query: 194 DSLDHLPDMVVIGTQESYPEREDWEVSIQMTLGHSFVMLESTTLGTLHLAVYVR--RHLI 251
L + +E WE+ + L + V+L L A +
Sbjct: 102 AGLADANTLCYNDRKEEVGNWWSWEIGVPRALADAMVLLH----AELSAAERTAYCAAID 157
Query: 252 WFCSEPEEADYSVRAGSAFRTKGAVAIGFTLFGSSFLFVTSHLTAHEERVK---DRIDDV 308
F +P R + GA + + + S ++ + V
Sbjct: 158 HFVPDPWLQFPPKRGK--ITSVGANRVDLCQ----GIIIRSLAGEDPTKLNHAVAGLSQV 211
Query: 309 RRIVKSLDLPKELPCKHRHKDVTQNYDY--VFWCG 341
+ V S D +H Y V G
Sbjct: 212 WQYVTSGDGIFRDGSFIQHSTTPYTGSYGVVLLTG 246
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.435
Gapped
Lambda K H
0.267 0.0386 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,785,440
Number of extensions: 84409
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 21
Length of query: 459
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,199,356
Effective search space: 444961076
Effective search space used: 444961076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.5 bits)