BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3199
(1144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q89703|POL_CSVMV Putative enzymatic polyprotein OS=Cassava vein mosaic virus GN=ORF
3 PE=3 SV=1
Length = 652
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 861 PIFRRRTQVFVTSDASDSGWGARVDN-----------RMIKGSWTECQKKWHINVKELFA 909
PI + + DAS++ +G+ + R G++ E ++K+ IN KEL A
Sbjct: 504 PINKEDMNWIIEVDASNNAYGSCLKYKPKNSKIEYLCRYNSGTFKENEQKYDINRKELIA 563
Query: 910 VQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQ 969
V L+ + L+++DN V +I+ KSI R ++ + V+N +Q
Sbjct: 564 VYQGLQSYSLFTCEGNKLVRTDNSQVYYWIKNDTNKKSIE-FRNIKYLLAKIAVYNFEIQ 622
Query: 970 AQYIPGMYNNIADSLSR 986
I G N IAD LSR
Sbjct: 623 L--IDGKTNIIADYLSR 637
>sp|P09523|POL_FMVD Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V
PE=3 SV=1
Length = 666
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 18/131 (13%)
Query: 868 QVFVTSDASDSGWGARVDNRMI----------KGSWTECQKKWHINVKELFAVQMSLEKN 917
+ + +DASDS WG + R + GS+ + +K +H N KEL AV+ + K
Sbjct: 538 HLIIETDASDSFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLAVKQVITKF 597
Query: 918 LAYVQNKVVLIQSD--NLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPG 975
AY+ +++D N T I +G +K L+R + +++ G
Sbjct: 598 SAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSKYQ------FDVEHLEG 651
Query: 976 MYNNIADSLSR 986
+ N +AD L+R
Sbjct: 652 VKNVLADCLTR 662
>sp|P03556|POL_CAMVD Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H)
GN=ORF V PE=3 SV=1
Length = 674
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 798 KKAEVIMGFLSFASFVIPLGKLMFRHIQR-LSLRLKKD-PLKLCKIPPMALSQMRWWIAA 855
K+ + +G L++AS IP I++ L +LK++ P K K + + +++ +
Sbjct: 473 KQLQRFLGILTYASDYIP----KLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQG 528
Query: 856 ---LGTPSPIFRRRTQVFVTSDASDSGWGARVDN-------------RMIKGSWTECQKK 899
L P P ++ + +DASD WG + R GS+ +K
Sbjct: 529 FPPLHHPLP----EEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKN 584
Query: 900 WHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYI--QKQGGTKSINLLRGVEEI 957
+H N KE AV +++K Y+ LI++DN ++ +G +K +R
Sbjct: 585 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQ--- 641
Query: 958 FRIATVHNITVQAQYIPGMYNNIADSLSR 986
A + + + ++I G N+ AD LSR
Sbjct: 642 ---AWLSHYSFDVEHIKGTDNHFADFLSR 667
>sp|Q00962|POL_CAMVN Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153)
GN=ORF V PE=3 SV=1
Length = 680
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 798 KKAEVIMGFLSFASFVIP-LGKLMFRHIQRLSLRLKKD-PLKLCKIPPMALSQMRWWIAA 855
K+ + +G L++AS IP L ++ Q L +LK++ P K K + + +++ +
Sbjct: 479 KQLQRFLGILTYASDYIPNLAQMR----QPLQAKLKENVPWKWTKEDTLYMQKVKKNLQG 534
Query: 856 ---LGTPSPIFRRRTQVFVTSDASDSGWGARVDN-------------RMIKGSWTECQKK 899
L P P ++ + +DASD WG + R GS+ ++
Sbjct: 535 FPPLHHPLP----EEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERN 590
Query: 900 WHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYI--QKQGGTKSINLLRGVEEI 957
+H N KE AV +++K Y+ LI++DN ++ +G +K +R
Sbjct: 591 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQ--- 647
Query: 958 FRIATVHNITVQAQYIPGMYNNIADSLSR 986
A + + + ++I G N+ AD LSR
Sbjct: 648 ---AWLSHYSFDVEHIKGTDNHFADFLSR 673
>sp|P03554|POL_CAMVS Enzymatic polyprotein OS=Cauliflower mosaic virus (strain
Strasbourg) GN=ORF V PE=3 SV=1
Length = 679
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 798 KKAEVIMGFLSFASFVIPLGKLMFRHIQR-LSLRLKKD-PLKLCKIPPMALSQMRWWIAA 855
K+ + +G L++AS IP I++ L +LK++ P + K + + +++ +
Sbjct: 478 KQLQRFLGILTYASDYIP----KLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQG 533
Query: 856 ---LGTPSPIFRRRTQVFVTSDASDSGWGARVDN-------------RMIKGSWTECQKK 899
L P P ++ + +DASD WG + R GS+ +K
Sbjct: 534 FPPLHHPLP----EEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKN 589
Query: 900 WHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYI--QKQGGTKSINLLRGVEEI 957
+H N KE AV +++K Y+ LI++DN ++ +G +K +R
Sbjct: 590 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQ--- 646
Query: 958 FRIATVHNITVQAQYIPGMYNNIADSLSR 986
A + + + ++I G N+ AD LSR
Sbjct: 647 ---AWLSHYSFDVEHIKGTDNHFADFLSR 672
>sp|P03555|POL_CAMVC Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841)
GN=ORF V PE=3 SV=1
Length = 679
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 798 KKAEVIMGFLSFASFVIPLGKLMFRHIQR-LSLRLKKD-PLKLCKIPPMALSQMRWWIAA 855
K+ + +G L++AS IP I++ L +LK++ P K K + + +++ +
Sbjct: 478 KQLQRFLGILTYASDYIP----KLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQG 533
Query: 856 ---LGTPSPIFRRRTQVFVTSDASDSGWGARVDN-------------RMIKGSWTECQKK 899
L P P ++ + +DASD WG + R GS+ ++
Sbjct: 534 FPPLHHPLP----EEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERN 589
Query: 900 WHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYI--QKQGGTKSINLLRGVEEI 957
+H N KE AV +++K Y+ LI++DN ++ +G +K +R
Sbjct: 590 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQ--- 646
Query: 958 FRIATVHNITVQAQYIPGMYNNIADSLSR 986
A + + + ++I G N+ AD LSR
Sbjct: 647 ---AWLSHYSFDVEHIKGTDNHFADFLSR 672
>sp|Q02964|POL_CAMVE Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC)
GN=ORF V PE=3 SV=1
Length = 679
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 34/209 (16%)
Query: 798 KKAEVIMGFLSFASFVIPLGKLMFRHIQR-LSLRLKKD-PLKLCKIPPMALSQMRWWIAA 855
K+ + +G L++AS IP I++ L +LK++ P K K + + +++ +
Sbjct: 478 KQLQRFLGILTYASDYIP----KLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQG 533
Query: 856 ---LGTPSPIFRRRTQVFVTSDASDSGWGARVDN-------------RMIKGSWTECQKK 899
L P P ++ + +DASD WG + R GS+ ++
Sbjct: 534 FPPLHHPLP----EEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERN 589
Query: 900 WHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYI--QKQGGTKSINLLRGVEEI 957
+H N KE AV +++K Y+ LI++DN ++ +G +K +R
Sbjct: 590 YHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQ--- 646
Query: 958 FRIATVHNITVQAQYIPGMYNNIADSLSR 986
A + + + ++I G N+ AD LSR
Sbjct: 647 ---AWLSHYSFDVEHIKGTDNHFADFLSR 672
>sp|P05400|POL_CERV Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3
SV=1
Length = 659
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 868 QVFVTSDASDSGWGA---RVDN------RMIKGSWTECQKKWHINVKELFAVQMSLEKNL 918
++ + +DAS+ WG + N R GS+ ++ +H N KEL AV ++K
Sbjct: 529 KLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFS 588
Query: 919 AYVQNKVVLIQSD--NLTVVCYIQKQGGTKSINLLR 952
Y+ LI++D N T I +G K L+R
Sbjct: 589 IYLTPSRFLIRTDNKNFTHFVNINLKGDRKQGRLVR 624
>sp|Q2HA54|PLPL_CHAGB Patatin-like phospholipase domain-containing protein CHGG_02900
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=CHGG_02900 PE=3
SV=1
Length = 854
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 202 PAFNREESSHSETEESEFPERDVSPPPDS--WEAPPLFDS----PEEITVSPDLPFSFAP 255
P ++R +S E + P R PP++ W P FD+ PE + +F
Sbjct: 4 PGYDRVDSKDDEPPNIQIPSRTYGFPPEAFDWSRLPDFDTNFLPPEHVE-------AFIQ 56
Query: 256 CVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNR 288
+ +P +P P+P+ A G SS +L+S W+R
Sbjct: 57 ALSAPDP-IP-PTPDGGATGSSSYRLNSPAWHR 87
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 560 PAFNREESSHSETEESEFPERDVSPPPDS--WEAPPLFDS----PEEITVSPDLPFSFAP 613
P ++R +S E + P R PP++ W P FD+ PE + +F
Sbjct: 4 PGYDRVDSKDDEPPNIQIPSRTYGFPPEAFDWSRLPDFDTNFLPPEHVE-------AFIQ 56
Query: 614 CVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNR 646
+ +P +P P+P+ A G SS +L+S W+R
Sbjct: 57 ALSAPDP-IP-PTPDGGATGSSSYRLNSPAWHR 87
>sp|Q9Y450|HBS1L_HUMAN HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1
Length = 684
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 76 PSANCLKEYPYRDMKKKMLSW------AFTRGLVLSPSAFSKQIRGSSHSHDIVARAVAP 129
PS ++EY Y D+K+ S F + + S +++ G + +I+ AV
Sbjct: 48 PSVEPVEEYDYEDLKESSNSVSNHQLSGFDQARLYSCLDHMREVLGDAVPDEILIEAV-- 105
Query: 130 LKSEFVSRETADRILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINE- 188
LK++F ++ +L + + + A STG+ A+ +D + E +++ ++ +
Sbjct: 106 LKNKFDVQKALSGVLEQDRVQSLKDKNEATVSTGKIAKGKPVDSQTSRSESEIVPKVAKM 165
Query: 189 TINSLFSRLQSELPAFNREESSHS 212
T++ + E+P + EE+ HS
Sbjct: 166 TVSGKKQTMGFEVPGVSSEENGHS 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,385,380
Number of Sequences: 539616
Number of extensions: 17629671
Number of successful extensions: 51434
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 51304
Number of HSP's gapped (non-prelim): 158
length of query: 1144
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1015
effective length of database: 121,958,995
effective search space: 123788379925
effective search space used: 123788379925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)