Query psy3199
Match_columns 1144
No_of_seqs 296 out of 935
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 18:50:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3199.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3199hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zd1b1 e.8.1.2 (B:5-428) HIV- 99.6 1.6E-16 1.1E-20 176.1 9.8 263 687-988 145-422 (424)
2 d1mu2a2 e.8.1.2 (A:3-429) HIV- 99.4 6.9E-14 5E-18 155.0 3.8 210 687-910 147-367 (427)
3 d1rila_ c.55.3.1 (A:) RNase H 98.3 9.1E-08 6.6E-12 89.3 3.3 116 867-987 2-139 (147)
4 d1mu2a1 c.55.3.1 (A:430-555) H 98.3 3.6E-07 2.6E-11 83.8 6.2 107 869-987 8-124 (126)
5 d1jl1a_ c.55.3.1 (A:) RNase H 98.3 2.3E-07 1.7E-11 85.9 4.8 115 868-987 2-137 (152)
6 d1s1ta1 c.55.3.1 (A:430-539) H 98.1 4.4E-06 3.2E-10 76.4 9.5 95 869-976 9-110 (110)
7 d1zbfa1 c.55.3.1 (A:62-193) BH 98.0 3.2E-06 2.3E-10 80.6 6.6 98 870-969 6-116 (132)
8 d1ztwa1 e.8.1.2 (A:24-278) MML 95.7 0.00037 2.7E-08 70.9 -2.8 87 682-769 160-250 (255)
9 d1hara_ e.8.1.2 (A:) HIV-1 rev 95.4 0.0012 8.9E-08 66.4 -0.1 55 688-743 150-209 (216)
10 d2csba2 a.60.2.4 (A:294-350) T 12.4 30 0.0022 27.3 0.9 25 68-92 20-44 (57)
No 1
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=99.63 E-value=1.6e-16 Score=176.10 Aligned_cols=263 Identities=13% Similarity=0.037 Sum_probs=169.3
Q ss_pred CccccccchhhHhhhhHHHHHHHHhcC----CCccccchhhhhccc-cccccccccchhhhhccchhHHHHhhhhccCcc
Q psy3199 687 GAFGILCHGLILQRLALADTINMVVSK----HPSVKSDLISALSSK-ESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPA 761 (1144)
Q Consensus 687 ~~fg~~~~~~ifqrl~l~d~~~e~~~~----~~~V~~Dli~~~s~~-e~~~~~~~~n~L~~lc~~~~~~va~k~~ll~pT 761 (1144)
=-||++|+|.|||| .++++++++.++ ++++|.|||.+.|+. ...|..+...+|+.+-...... ..||.++.++
T Consensus 145 lPfGl~nsPa~Fqr-~m~~il~~~~~~~~~~~i~~Y~DDIlI~S~~~~eeH~~~l~~vl~~L~~~gl~l-~~Kk~f~~~~ 222 (424)
T d2zd1b1 145 LPQGWKGSPAIFQS-SMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTT-PDKKHQKEPP 222 (424)
T ss_dssp CCTTCTHHHHHHHH-HHHHHHHHHHHHCTTCEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cCCcccCcHHHHHH-HHHHHcccccccCcceeEEeccceEEEecCchhHHHHHHHHHHHHHHHHhCCcc-chhhhhhhcc
Confidence 35899999999999 999999999876 478999999998875 4568777778888775555443 4677788889
Q ss_pred cccCcccccCCCCCchhhcChHHHHHHHhhCCCCCHHHHHHHhcccchhhhcCChhHHHHHHHHHHHHhcccCCCccccC
Q psy3199 762 IRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKI 841 (1144)
Q Consensus 762 VRLP~rI~krI~QiEefLaDpKkLLEa~rs~~~~SvKELQSFLGlLNhVS~VIP~GR~YyRrLyr~lskLrK~p~a~~rL 841 (1144)
|..++.++. ..+.-.++.+ +....+.|++|||+|||.+||++.+||... ++.|.+.+... ++....+.|
T Consensus 223 v~~LG~~is----~~gi~~~~~k----l~~~~p~t~kelq~fLG~~n~~r~fIp~~s--~~~L~~ll~~~-~~~~~~~~W 291 (424)
T d2zd1b1 223 FLWMGYELH----PDKWTVQPIV----LPEKDSWTVNDIQKLVGKLNWASQIYPGIK--VRQLSKLLRGT-KALTEVIPL 291 (424)
T ss_dssp CTTCCEEEC----GGGCCCCCCC----CCCCSSEEHHHHHHHHHHHHHHTTTCTTCC--CHHHHHTTCSC-CCTTCEECC
T ss_pred cccceeeec----CCcEeCCHHH----hccccCCCHHHHHHHHHHHHHHHHhcccch--HHHHHHHhhhh-ccCCCCccC
Confidence 999988431 1111111111 123456799999999999998888887643 23444433222 234567999
Q ss_pred CHHHHHHHHHHHHHhCCCCcc--ccCCccEEEEecCCCCceEEEEeecccc-----cc---ccccccccccchhhHHHHH
Q psy3199 842 PPMALSQMRWWIAALGTPSPI--FRRRTQVFVTSDASDSGWGARVDNRMIK-----GS---WTECQKKWHINVKELFAVQ 911 (1144)
Q Consensus 842 SeEAreDLeWWKe~LsS~~pI--~pP~~dfiLyTDASdSGIGAVL~Qe~aS-----gt---WSeaErnySIneRELLAVV 911 (1144)
+++++.+|+..|+.|.+...+ ..|..++.++||||+.|.|++..+.... +. .+.++.| .+-.+++++..
T Consensus 292 t~e~~~af~~lK~~l~~~p~L~~~Dp~kp~~~~~das~~g~~~~~~~q~~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~k 370 (424)
T d2zd1b1 292 TEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTN-DVKQLTEAVQK 370 (424)
T ss_dssp CHHHHHHHHHHHHHTTSCCTTCCCCTTSCCEEEEEEEETTEEEEEEESSTTCEEEEEEEECCSSCTTC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccCCCCCCCEEEEEecCCCCceEEEEEcCCCcccceEEeccccccccC-HHHHHHHHHHH
Confidence 999999999999999864332 2467899999999988776654332111 11 2223334 44455666777
Q ss_pred HHHHHhhcccCCcEEEEEeCChhHHHHHHhcCCCCChhhhhHHHHHHHHHHhcceeEEEEEecCCcccCCCcCCCCC
Q psy3199 912 MSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMYNNIADSLSRSQ 988 (1144)
Q Consensus 912 lALe~fr~yL~Gk~flVrTDNKTAVSyLnKqgSkrSp~LnrLARrI~~wLee~nIdftaeHIPGkeNvVADALSR~~ 988 (1144)
.+.+.+.+..++-.+.|-.- ...|.+.| .++ ..+.|||.-+++-++.|+|..
T Consensus 371 ~~~e~~~~~g~~p~~~~p~~---------------------~~~w~~~~-~~~---~~~~~~p~~~~~~~~~l~~~~ 422 (424)
T d2zd1b1 371 ITTESIVIWGKTPKFKLPIQ---------------------KETWETWW-TEY---WQATWIPEWEFVNTPPLVKLW 422 (424)
T ss_dssp HHHHHHHHHSSCCEEEESSC---------------------HHHHHHHH-HHH---CCCSSCCEEEECCSCCTTTGG
T ss_pred HHHHHHHHhCcCccEECCcc---------------------HHHHHHHH-Hhh---cccccCCCceeccCcHHHHHh
Confidence 77777777666655544220 11222223 232 345899999999999999963
No 2
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=99.37 E-value=6.9e-14 Score=154.95 Aligned_cols=210 Identities=14% Similarity=0.053 Sum_probs=142.1
Q ss_pred CccccccchhhHhhhhHHHHHHHHhcCC----Cccccchhhhhcccc-ccccccccchhhhhccchhHHHHhhhhccCcc
Q psy3199 687 GAFGILCHGLILQRLALADTINMVVSKH----PSVKSDLISALSSKE-SMFKKTSDNLLQYVCGKRAEAIASRRKLLEPA 761 (1144)
Q Consensus 687 ~~fg~~~~~~ifqrl~l~d~~~e~~~~~----~~V~~Dli~~~s~~e-~~~~~~~~n~L~~lc~~~~~~va~k~~ll~pT 761 (1144)
=.||++|+|.|||| .++.++.++.+++ +++|.|||.+.|+.+ ..|..+...++..+-.... ....||.+..++
T Consensus 147 LP~GlknsPa~fQ~-~m~~iL~~~~~~~~~~~i~~Y~DDIlI~S~~~~~eH~~~v~~l~~~l~~~g~-~~~~kK~~~~~~ 224 (427)
T d1mu2a2 147 LPQGWKGSPAIFQH-TMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGF-STPDEKFQKDPP 224 (427)
T ss_dssp CCTTCTTHHHHHHH-HHHHHHHHHHHHCTTSEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHTTC-BCCSTTEECSSS
T ss_pred cCCCCcCcHHHHHH-HHHHHHHHHHhhcccceeEeeeeeeEeeccchhHHHHHHHHHHHHHHHHhcc-hhhhhhhhceee
Confidence 35999999999999 9999999998764 788999999999644 4677777776666433222 344666677888
Q ss_pred cccCcccccCCCCCchhhcChHHHHHHHhhCCCCCHHHHHHHhcccchhhhcCChhHHHHHHHHHHHHhcccCCCccccC
Q psy3199 762 IRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPLKLCKI 841 (1144)
Q Consensus 762 VRLP~rI~krI~QiEefLaDpKkLLEa~rs~~~~SvKELQSFLGlLNhVS~VIP~GR~YyRrLyr~lskLrK~p~a~~rL 841 (1144)
|.+++.++.. .......+ .+....+.|++|||+|+|.+||++.++|... .+.+.+.+..+ +..+..+.|
T Consensus 225 v~~LG~~i~~---~~~k~~~i-----~l~~~~p~tvkelq~fLG~~n~~r~fIp~~~--~~~l~~pL~~~-~~~~~~~~W 293 (427)
T d1mu2a2 225 YHWMGYELWP---TKWKLQKI-----QLPQKEIWTVNDIQKLVGVLNWAAQLYPGIK--TKHLCRLISGK-MTLTEEVQW 293 (427)
T ss_dssp EEETTEEECS---SEEEECCC-----CCCCCSSCBHHHHHHHHHHHHHHHHHSTTCC--CHHHHTTSCSS-SCTTCBCCC
T ss_pred eeeeeeEecC---CccccCcc-----ccCCCCCCCHHHHHHHhhHHHHHHHhhCCCc--hhhHHHHHHhh-hcCCCCccC
Confidence 9999884421 11111100 0122346799999999999995555554321 11222211222 234678999
Q ss_pred CHHHHHHHHHHHHHhCCCCccc--cCCccEEEEecCCCC-ceEEEEeecccccccc---ccccccccchhhHHHH
Q psy3199 842 PPMALSQMRWWIAALGTPSPIF--RRRTQVFVTSDASDS-GWGARVDNRMIKGSWT---ECQKKWHINVKELFAV 910 (1144)
Q Consensus 842 SeEAreDLeWWKe~LsS~~pI~--pP~~dfiLyTDASdS-GIGAVL~Qe~aSgtWS---eaErnySIneRELLAV 910 (1144)
+++++.+|+..++.|.+...+. .|..++.+++|++.. +||+++.|.. ...|. ...+++|+|..|++|-
T Consensus 294 t~e~q~afe~lK~~L~~~~~l~~~dp~kpl~~~i~~~~~~~~~~~~~q~~-~~l~~~~~~~~~~~~~~~~~~l~~ 367 (427)
T d1mu2a2 294 TELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQEE-KILKVGKYAKVKNTHTNGIRLLAQ 367 (427)
T ss_dssp CHHHHHHHHHHHHHHSCCEEEECBCTTSCCEEEEEECSSSCEEEEEEETT-EEEEEEEECCC--CEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCcccccCCCCCCEEEEEEcCCCCcEEEEEEccC-CceeeeeecccccccCCHHHHHHH
Confidence 9999999999999997653333 467899999999976 5677887753 22222 1256899999999884
No 3
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=98.33 E-value=9.1e-08 Score=89.30 Aligned_cols=116 Identities=17% Similarity=0.101 Sum_probs=74.9
Q ss_pred ccEEEEecCCCC------ceEEEEeeccccccccccccccccchhhHHHHHHHHHHhhcccCCcEEEEEeCChhHHHHHH
Q psy3199 867 TQVFVTSDASDS------GWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQ 940 (1144)
Q Consensus 867 ~dfiLyTDASdS------GIGAVL~Qe~aSgtWSeaErnySIneRELLAVVlALe~fr~yL~Gk~flVrTDNKTAVSyLn 940 (1144)
..+.||||+|.. |||+++........+.......+.+..|+.|++.||+.. .....+.|+||++.++..+.
T Consensus 2 ~~i~iytDGs~~~N~g~~G~g~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~~i~i~tds~~~~~~~~ 78 (147)
T d1rila_ 2 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKAL---KEPCEVDLYTDSHYLKKAFT 78 (147)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSC---CSCCEEEEECCCHHHHHHHH
T ss_pred CEEEEEEccCCCCCCCccEEEEEEEECCcceEEecccccccHHHHHHHHHHHHhhhc---cCCceEEEecchhhhhcccc
Confidence 357899998842 788887543222223333344467788999999999752 34568999999998876554
Q ss_pred hc--------C---CCCCh-hhhhHHHHHHHHHHhcceeEEEEEecC----CcccCCCcCCCC
Q psy3199 941 KQ--------G---GTKSI-NLLRGVEEIFRIATVHNITVQAQYIPG----MYNNIADSLSRS 987 (1144)
Q Consensus 941 Kq--------g---SkrSp-~LnrLARrI~~wLee~nIdftaeHIPG----keNvVADALSR~ 987 (1144)
.. . ....+ ....++.++..++..++ +.++|||| ..|..||.|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~v~n~dL~~~l~~~~~~~~--v~~~wVkgHsg~~gNe~AD~LAk~ 139 (147)
T d1rila_ 79 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHR--VRFHFVKGHTGHPENERVDREARR 139 (147)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSE--EECCCCCGGGSCTHHHHHHHHHHH
T ss_pred ccchhhhhhccccccccccchhHHHHHHHHHHhhhcc--cceEEccCCCCCcchHHHHHHHHH
Confidence 21 0 00011 11236677766665554 67799997 567779998875
No 4
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=98.28 E-value=3.6e-07 Score=83.83 Aligned_cols=107 Identities=18% Similarity=0.068 Sum_probs=68.8
Q ss_pred EEEEecCCCC------ceEEEEeeccccccccccccccccchhhHHHHHHHHHHhhcccCCcEEEEEeCChhHHHHHHhc
Q psy3199 869 VFVTSDASDS------GWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQ 942 (1144)
Q Consensus 869 fiLyTDASdS------GIGAVL~Qe~aSgtWSeaErnySIneRELLAVVlALe~fr~yL~Gk~flVrTDNKTAVSyLnKq 942 (1144)
..||||+|.. |+|+++.... ........-+.+..||.||+.||+. .+..+.|+||++.++..++..
T Consensus 8 ~t~YTDGS~~~n~~~~~~g~~~~~~~---~~~~~~~~~tnn~AEl~Ai~~al~~-----~~~~i~I~tDS~~v~~~~~~~ 79 (126)
T d1mu2a1 8 ETFYTDGSCNRQSKEGKAGYVTDRGK---DKVKKLEQTTNQQAELEAFAMALTD-----SGPKVNIIVDSQYVMGIVASQ 79 (126)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTSC---EEEEEESSCCHHHHHHHHHHHHHHT-----SCSEEEEEESCHHHHHHHHTC
T ss_pred cEEEEcCCCCCCCCcEEEEEEecCCC---EEEEecCCCcchHHHHHHHHHHhcc-----CCcceEEEechHHHHHHHhcC
Confidence 5799999942 4555543211 0111122346789999999999984 456899999999999999875
Q ss_pred CCCCChhhhhHHHHHHHHHHhcceeEEEEEecCCc----ccCCCcCCCC
Q psy3199 943 GGTKSINLLRGVEEIFRIATVHNITVQAQYIPGMY----NNIADSLSRS 987 (1144)
Q Consensus 943 gSkrSp~LnrLARrI~~wLee~nIdftaeHIPGke----NvVADALSR~ 987 (1144)
...... ....+.+...... ..+.+.||||.. |..||.|.+.
T Consensus 80 ~~~~~~--~~~~~~~~~~~~~--~~v~~~wV~gH~g~~gNe~AD~LA~~ 124 (126)
T d1mu2a1 80 PTESES--KIVNQIIEEMIKK--EAIYVAWVPAHKGIGGNQEVDHLVSQ 124 (126)
T ss_dssp CSEESC--HHHHHHHHHHHHC--SEEEEEECCSSSCCTTHHHHHHHHHT
T ss_pred Cccccc--hHHHHHHHHhhhc--ceeEEEEEeCCCCCcchHHHHHHHHh
Confidence 322111 1223333333333 357889999966 8888887654
No 5
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=98.28 E-value=2.3e-07 Score=85.86 Aligned_cols=115 Identities=22% Similarity=0.204 Sum_probs=73.4
Q ss_pred cEEEEecCCC------CceEEEEeeccccccccccccccccchhhHHHHHHHHHHhhcccCCcEEEEEeCChhHHHHHHh
Q psy3199 868 QVFVTSDASD------SGWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQK 941 (1144)
Q Consensus 868 dfiLyTDASd------SGIGAVL~Qe~aSgtWSeaErnySIneRELLAVVlALe~fr~yL~Gk~flVrTDNKTAVSyLnK 941 (1144)
.+.||||+|. .|||+++........++......+.+..|++|++.|++.. .....+.++||++.++..++.
T Consensus 2 ~I~IYtDGS~~~N~g~aG~G~vi~~~~~~~~~~~~~~~~tnn~aE~~Ai~~Al~~~---~~~~~i~i~tds~~~i~~~~~ 78 (152)
T d1jl1a_ 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL---KEHAEVILSTDSQYVRQGITQ 78 (152)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTC---CSCCEEEEEECCHHHHHHHHT
T ss_pred EEEEEEeCCCCCCCCcEEEEEEEEECCeEEEeccccCcccHHHHHHhhhhhhhhhh---cccceEEEeecceeeEEcccc
Confidence 5789999884 3899998654222223333344466789999999999863 233578999999987766642
Q ss_pred cC------C----CCCh-hhhhHHHHHHHHHHhcceeEEEEEecCC----cccCCCcCCCC
Q psy3199 942 QG------G----TKSI-NLLRGVEEIFRIATVHNITVQAQYIPGM----YNNIADSLSRS 987 (1144)
Q Consensus 942 qg------S----krSp-~LnrLARrI~~wLee~nIdftaeHIPGk----eNvVADALSR~ 987 (1144)
.. + ...+ ....+++.+..++.. ..++++||||. .|..||.|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~--~~V~~~wV~gH~g~~gNe~AD~LAk~ 137 (152)
T d1jl1a_ 79 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ--HQIKWEWVKGHAGHPENERADELARA 137 (152)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT--CEEEEEECCSSTTCHHHHHHHHHHHH
T ss_pred hhhHhHhccchhcccCeeecHHHHHHHHHHhhc--ceeEEEEecccCCCccHHHHHHHHHH
Confidence 10 0 0011 112245555444433 45788999974 57779999875
No 6
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=98.11 E-value=4.4e-06 Score=76.35 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=65.3
Q ss_pred EEEEecCCCC------ceEEEEeec-cccccccccccccccchhhHHHHHHHHHHhhcccCCcEEEEEeCChhHHHHHHh
Q psy3199 869 VFVTSDASDS------GWGARVDNR-MIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQK 941 (1144)
Q Consensus 869 fiLyTDASdS------GIGAVL~Qe-~aSgtWSeaErnySIneRELLAVVlALe~fr~yL~Gk~flVrTDNKTAVSyLnK 941 (1144)
..+|||+|.. |+|++.... ..... ....+.|..||.||+.||+. ..+.+.|+||++.++..+++
T Consensus 9 ~t~ytDGs~~~n~~~g~~g~~~~~~~~~~~~----~~~~TNn~aEl~Avi~aL~~-----~~~~v~I~TDS~yvi~~i~~ 79 (110)
T d1s1ta1 9 ETFYVDGAANRETKLGKAGYVTNRGRQKVVT----LTDTTNQKTELQAIYLALQD-----SGLEVNIVTDSQYALGIIQA 79 (110)
T ss_dssp EEEEEEEEEETTTTEEEEEEEETTSCEEEEE----ESSCCHHHHHHHHHHHHHHH-----SCSEEEEEECCHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCcEEEEEEecCCeEEEe----cccCcHHHHHHHHHHHHHHh-----CCCeEEEEEehHHHHHHHhc
Confidence 4699999832 455554321 11111 22347889999999999985 34589999999999999998
Q ss_pred cCCCCChhhhhHHHHHHHHHHhcceeEEEEEecCC
Q psy3199 942 QGGTKSINLLRGVEEIFRIATVHNITVQAQYIPGM 976 (1144)
Q Consensus 942 qgSkrSp~LnrLARrI~~wLee~nIdftaeHIPGk 976 (1144)
...+ ..+.++.++...+..+. .+.+.||||.
T Consensus 80 ~~~~---~~~~l~~~il~~l~~~~-~v~i~WVpgH 110 (110)
T d1s1ta1 80 QPDQ---SESELVNQIIEQLIKKE-KVYLAWVPAH 110 (110)
T ss_dssp CCSE---ESCHHHHHHHHHHHHCS-EEEEEECCSS
T ss_pred Cccc---cchHHHHHHHHHHhcCC-ceEEEEeCCC
Confidence 6433 23456777766666655 4789999983
No 7
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]}
Probab=98.01 E-value=3.2e-06 Score=80.57 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=65.2
Q ss_pred EEEecCCCC------ceEEEEeeccccccccccccccccchhhHHHHHHHHHHhhcccCCcEEEEEeCChhHHHHHHhcC
Q psy3199 870 FVTSDASDS------GWGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQG 943 (1144)
Q Consensus 870 iLyTDASdS------GIGAVL~Qe~aSgtWSeaErnySIneRELLAVVlALe~fr~yL~Gk~flVrTDNKTAVSyLnKqg 943 (1144)
.||||||.. |+|+|+.........+....+.+-|..||+|++.||+.... .+.++.|+||++.++.++++.+
T Consensus 6 sIy~DGa~~GNPGp~g~g~v~~~~~~~~~~sg~~~~~TNN~aEl~A~i~aL~~~~~--~~~~i~I~tDS~yvi~wv~~~~ 83 (132)
T d1zbfa1 6 SLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKE--RNSRKPIYSNSQTAIKWVKDKK 83 (132)
T ss_dssp SEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHH--TTCCCCEEESCHHHHHHHHHTC
T ss_pred eEEEeecCCCCCchheEEEEEEcCCEEEEEEcCcCccchHHHHHHHHHHHHHHhhc--CCceEEEEeccHHHHHHHHhCc
Confidence 389999975 68988764322122233344557889999999999997643 3567999999999999998754
Q ss_pred CC-------CChhhhhHHHHHHHHHHhcceeEE
Q psy3199 944 GT-------KSINLLRGVEEIFRIATVHNITVQ 969 (1144)
Q Consensus 944 Sk-------rSp~LnrLARrI~~wLee~nIdft 969 (1144)
-+ ++..+-.++.+...|+..+.+.+.
T Consensus 84 ~kt~~~~~vkN~~l~~~i~~a~~~lk~h~~~~~ 116 (132)
T d1zbfa1 84 AKSTLVRNEETALIWKLVDEAEEWLNTHTYETP 116 (132)
T ss_dssp CCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCC
T ss_pred eecCcCCCcccHHHHHHHHHHHHHHHhCCcCce
Confidence 11 222232334444557777766543
No 8
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=95.65 E-value=0.00037 Score=70.94 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=71.6
Q ss_pred hhcCCCccccccchhhHhhhhHHHHHHHHhcC----CCccccchhhhhccccccccccccchhhhhccchhHHHHhhhhc
Q psy3199 682 LACNDGAFGILCHGLILQRLALADTINMVVSK----HPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKL 757 (1144)
Q Consensus 682 ~~~~~~~fg~~~~~~ifqrl~l~d~~~e~~~~----~~~V~~Dli~~~s~~e~~~~~~~~n~L~~lc~~~~~~va~k~~l 757 (1144)
..-+--.||++|+|.|||| .+..++.++..+ .+.+|.|||.+.|+....|..+...+|+.+-........+|+++
T Consensus 160 y~~~~lPfGl~~spa~fq~-~~~~il~~~~~~~~~~~~~~Y~DDili~s~t~~eh~~~l~~vl~~l~~~gl~~~~~K~~~ 238 (255)
T d1ztwa1 160 LTWTRLPQGFKNSPTLFDE-ALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQI 238 (255)
T ss_dssp EEESBCCTTCTTHHHHHHH-HHHHHTHHHHHHCTTCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCBCTTTCEE
T ss_pred eEEeeeehhcccchhhhHH-HHHHHHHHhhccCCceEEEEEeeeeeccCCCHHHHHHHHHHHHHHHHHCcCEeCHHHeEC
Confidence 3445557999999999999 888888776543 46779999999999999999998888888766677777889999
Q ss_pred cCcccccCcccc
Q psy3199 758 LEPAIRVPPRIL 769 (1144)
Q Consensus 758 l~pTVRLP~rI~ 769 (1144)
+.++|...+.++
T Consensus 239 ~~~~v~fLG~~I 250 (255)
T d1ztwa1 239 CQKQVKYLGYLL 250 (255)
T ss_dssp EESEEEETTEEE
T ss_pred CCCCcEEeEEEE
Confidence 888999888754
No 9
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=95.39 E-value=0.0012 Score=66.42 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=45.7
Q ss_pred ccccccchhhHhhhhHHHHHHHHhcCC----Cccccchhhhhcc-ccccccccccchhhhh
Q psy3199 688 AFGILCHGLILQRLALADTINMVVSKH----PSVKSDLISALSS-KESMFKKTSDNLLQYV 743 (1144)
Q Consensus 688 ~fg~~~~~~ifqrl~l~d~~~e~~~~~----~~V~~Dli~~~s~-~e~~~~~~~~n~L~~l 743 (1144)
.||++|+|.+||| .+..+++++.++. +++|.|||.+.|+ ....|..+...+|+.+
T Consensus 150 PfGl~naPa~fqr-~m~~~l~~~~~~~~~~~v~~YlDDIlI~S~~~~eeH~~~l~~vl~~L 209 (216)
T d1hara_ 150 PQGWKGSPAIFQS-SMTKILAPFKAANPDIVIYQYMDDLYVGSDLAIGAHRTKIEELRQHL 209 (216)
T ss_dssp CTTCTTHHHHHHH-HHHHHHHHHHHHCTTSEEEEETTEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHH-HHHHHHHHHhhcCCCeEEEEECceEEEccCCCHHHHHHHHHHHHHHH
Confidence 6999999999999 9999999998764 6789999999886 4466777776677664
No 10
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=12.44 E-value=30 Score=27.33 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=21.9
Q ss_pred hhhhhhcCCCccccccCCchhhHHh
Q psy3199 68 LEIVRAFDPSANCLKEYPYRDMKKK 92 (1144)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (1144)
|-+.||||-|..-+..-|||.+|.-
T Consensus 20 lclarafdgsismiattpyrtlkdv 44 (57)
T d2csba2 20 LCLARAFDGSISMIATTPYRTLKDV 44 (57)
T ss_dssp HHHHHHTTTCHHHHTTSCHHHHHHH
T ss_pred HHHHHHhCCceeeeecCcchHHHhh
Confidence 4568999999999999999999863
Done!