RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3199
(1144 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 5e-12
Identities = 75/518 (14%), Positives = 127/518 (24%), Gaps = 160/518 (30%)
Query: 27 KDAARKFLPDGWRDWTLVNSIDLEMEVDSSTLNKLRFALPTLE--IVRAFDPSANCLKEY 84
KD F ++ + D+ + S +R F L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW----TLLSK 74
Query: 85 PYRDMKKKMLSWAFTRGLVLSP------SAFSKQIRGSS-------HSHDIVARAVAPLK 131
++K F VL S + R S D +
Sbjct: 75 QEEMVQK------FVEE-VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 132 SEFVSR-ETADRI---LSNIEKPASRSSSVAMESTG------EAARDLSLDDRFKAHEEK 181
VSR + ++ L + +PA + +G + + + + K
Sbjct: 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM---DFK 183
Query: 182 M----MGRINET------INSLFSRLQSEL-----PAFNREESSHSETEE-------SEF 219
+ + N + L ++ + N + HS E +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 220 PE-----RDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPC---VKEREPDVPLPSPEA 271
+V +W A F+ S C + R V
Sbjct: 244 ENCLLVLLNVQNA-KAWNA---FN------------LS---CKILLTTRFKQV------- 277
Query: 272 EAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAF 331
D + ++ L + P LL
Sbjct: 278 ---------TDFLSAATTTHI-------------SLDHHSMTLTPDEVK-SLLL------ 308
Query: 332 GILCHGLILQRL-ALADTIN-MVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKR 389
Q L T N +S +I+ T DN C K
Sbjct: 309 --KYLDCRPQDLPREVLTTNPRRLS--------IIAESIRD---GLATWDNWKHVNCDKL 355
Query: 390 AEAIASRRKLLEPA---------------IRVPPRILKDI-PPSEEYLFDPKSLAEAMRA 433
I S +LEPA +P +L I + D + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--DVMVVVNKLHK 413
Query: 434 QSSSGKNGKQRIPSIPSVNINVDMMSEPACKGKQHRKI 471
S K K+ SIPS I +++ + + HR I
Sbjct: 414 YSLVEKQPKESTISIPS--IYLELKVKLENEYALHRSI 449
Score = 64.5 bits (156), Expect = 2e-10
Identities = 79/564 (14%), Positives = 161/564 (28%), Gaps = 177/564 (31%)
Query: 536 HEEKM---MGRINETINSLFSRLQSELPAFNR-------EESSHSETEESEFPERDVSPP 585
H M G + L AF ++ S + E +S
Sbjct: 3 HHHHMDFETGEHQYQYKDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 586 PDS------WEAPPLFDSPEEI-------TVSPDLPFSFAPCVKE-REPDVPLPSPEAEA 631
S W L EE+ + + F +P E R+P + E
Sbjct: 60 AVSGTLRLFWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQ 115
Query: 632 HGR---SSQKLDSVGWNRIK-YMEAQKEIQAGGIFARLQPNPELDVPH-------NSLAD 680
R +Q +R++ Y++ ++ + L+P + + +A
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALL------ELRPAKNVLI-DGVLGSGKTWVA- 167
Query: 681 LLACNDGA------FGIL------CH--GLILQRLALADTINMVVSKHPSVKSDLISALS 726
L C F I C+ +L+ L + + + + +SD S +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIK 224
Query: 727 SKESMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEY-LFDP--- 782
+ + LL+ + LL +L ++ ++ + F+
Sbjct: 225 LRIHSIQAELRRLLKSKPYENC--------LL---------VLLNVQNAKAWNAFNLSCK 267
Query: 783 -------KSLAEAMRAQSSSSWKKAEVIMGFLS------FASFVIPLGKLMFRHIQRLSL 829
K + + + A +++ M + L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--------------LDC 313
Query: 830 RLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDNRMI 889
R + P ++ P LS IA A DN
Sbjct: 314 RPQDLPREVLTTNPRRLSI----IAES--------------------IRDGLATWDN--- 346
Query: 890 KGSWTECQKKW-HINVKELF-AVQMSLE-----------KNLAYVQNKVVLIQSDNLTVV 936
W H+N +L ++ SL L+ V I + L+++
Sbjct: 347 ----------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLI 395
Query: 937 -CYIQKQGGTKSINLL--------RGVEEIFRIATVH-NITVQAQYIPGMYNNIADSLSR 986
+ K +N L + E I +++ + V+ + ++ +I D +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 987 SQVLPDWHLLP-HLTSWIFQNWGR 1009
+ L+P +L + + + G
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGH 479
Score = 53.3 bits (127), Expect = 4e-07
Identities = 65/440 (14%), Positives = 118/440 (26%), Gaps = 127/440 (28%)
Query: 467 QHRKIRGSSHSH---DIVARAVAPLKSEFVSRETAD---RILSNIEKPASRSSSVAMEST 520
H H + DI++ F ++ D ILS E + S
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE------IDHIIMSK 58
Query: 521 GEAARDLSLDDRFKAHEEKMMGR-INETINS----LFSRLQSEL--PAFNRE--ESSHSE 571
+ L L + +E+M+ + + E + L S +++E P+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 572 --TEESEFPERDVSPPPD---------------------------SWEAPPLFDSPEEIT 602
+ F + +VS +W A + S +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 603 VSPDLPF--SFAPCVKEREPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGG 660
F + C L + + + D +++ Q E++
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--- 235
Query: 661 IFARLQPNPE----LD-VPHNSLADLLACNDGAFGILCHGLILQR-LALADTINMVVSKH 714
+ +P L V + + AF + C L+ R + D ++ + H
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWN-------AFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 715 PSVKSDLISALSSKESM-----------------------------------FKKTSDNL 739
S+ L+ E T DN
Sbjct: 289 ISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 740 LQYVCGKRAEAIASRRKLLEPA---------------IRVPPRILK----DIPPSEEYL- 779
C K I S +LEPA +P +L D+ S+ +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 780 ---FDPKSLAEAMRAQSSSS 796
SL E +S+ S
Sbjct: 408 VNKLHKYSLVEKQPKESTIS 427
Score = 49.5 bits (117), Expect = 6e-06
Identities = 97/696 (13%), Positives = 194/696 (27%), Gaps = 198/696 (28%)
Query: 213 ETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAE 272
ET E ++ +D+ +A F + D+P + + E D + S +A
Sbjct: 10 ETGEHQYQYKDILS--VFEDA---FVDNFDCKDVQDMP---KSILSKEEIDHIIMSKDAV 61
Query: 273 AHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACNDGAFG 332
+ W + Q+E+ + L+ N + L +
Sbjct: 62 ------SGTLRLFW---TLLSKQEEMVQKFVEEVLRIN------YKFLMSPIKTEQRQPS 106
Query: 333 ILCHGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYV------- 385
++ I QR L + N V +K+ + L ++++ + + V
Sbjct: 107 MMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKL--RQALLELRPA---KNVLIDGVLG 160
Query: 386 CGKR---AEAIASRRKLLEPAIRV---------PPRILKDIPPSEEYLFDPKSLAEAMRA 433
GK + S + + ++ P + ++ Y DP +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS----- 215
Query: 434 QSSSGKNGKQRIPSIPSVNINVDMMSEPACKGKQHRKIRGSSHSHD-IVARAVAPLKSEF 492
+S N K RI SI + + R ++ + + +V V
Sbjct: 216 RSDHSSNIKLRIHSI---------------QAELRRLLKSKPYENCLLVLLNVQ------ 254
Query: 493 VSRETAD------RILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINE 546
+ + + +IL +R V + +SLD E
Sbjct: 255 -NAKAWNAFNLSCKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTPD------E 302
Query: 547 TINSLFSRL----QSELPAFNREESSHSETEESEFPERDVSPPPDSWE--APPLFDSPEE 600
SL + +LP RE + + S E + +W+ D
Sbjct: 303 VK-SLLLKYLDCRPQDLP---REVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTT 357
Query: 601 ITVSPDLPFSFAPCVKEREP---------------DVPLPSPEAEAHGRSSQKLDSVGWN 645
I + EP +P+ L S+ W
Sbjct: 358 I---------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-----------ILLSLIWF 397
Query: 646 RIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACN--DGAFGILCHGLILQRLAL 703
+ + + +L H L+ + I + L+ L
Sbjct: 398 DVIKSDVMVVVN------------KL---HKYS--LVEKQPKESTISI--PSIYLE---L 435
Query: 704 ADTINMVVSKHPS-VKSDLISALSSKESMFKKTSDN-LLQYV-----CGKRAEAIASRRK 756
+ + H S V I + + D ++ + E + R
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 757 L------LEPAIR-------VPPRI---LKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKA 800
+ LE IR I L+ + + Y+ D E +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL----------V 545
Query: 801 EVIMGFLSFASFVIPLGKLMFRHIQRLSLRLKKDPL 836
I+ FL + K + + R++L + + +
Sbjct: 546 NAILDFLPKIEENLICSK--YTDLLRIALMAEDEAI 579
Score = 45.2 bits (106), Expect = 2e-04
Identities = 66/476 (13%), Positives = 122/476 (25%), Gaps = 162/476 (34%)
Query: 22 VLARLKDAARKF-----LPDG--WRDWTLVNSIDLEMEVDSSTLNKLRFALPTLEIVRAF 74
+A D + + W + NS + +E+ L KL + + R+
Sbjct: 165 WVA--LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRS- 217
Query: 75 DPSANCLKEYPYR--DMKKK----MLSWAFTRGL-VLSPSAFSKQIRGSSHSHDIVARAV 127
D S+N R ++ + + S + L VL V
Sbjct: 218 DHSSN----IKLRIHSIQAELRRLLKSKPYENCLLVL----------------LNVQ--- 254
Query: 128 APLKSEFVSRETAD------RILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEK 181
+ + + +IL +R V + +SLD
Sbjct: 255 --------NAKAWNAFNLSCKILL-----TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 182 MMGRINETINSLFSRL----QSELPAFNREESSHSETEESEFPERDVSPPPDSWE--APP 235
E SL + +LP RE + + S E + +W+
Sbjct: 302 ------EVK-SLLLKYLDCRPQDLP---REVLTTNPRRLSIIAES-IRDGLATWDNWKHV 350
Query: 236 LFDSPEEITVSPDLPFSFAPCVKEREP---------------DVPLPSPEAEAHGRSSQK 280
D I + EP +P+
Sbjct: 351 NCDKLTTI---------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-----------I 390
Query: 281 LDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSLADLLACN--DGAFGILCHGL 338
L S+ W + + + +L H L+ + I +
Sbjct: 391 LLSLIWFDVIKSDVMVVVN------------KL---HKYS--LVEKQPKESTISI--PSI 431
Query: 339 ILQRLALADTINMVVSKHPS-VKSDLISALSSKESMFKKTSDN-LLQYV-----CGKRAE 391
L+ L + + H S V I + + D ++ + E
Sbjct: 432 YLE---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 392 AIASRRKL------LEPAIR-------VPPRI---LKDIPPSEEYLFDPKSLAEAM 431
+ R + LE IR I L+ + + Y+ D E +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Score = 34.1 bits (77), Expect = 0.32
Identities = 43/244 (17%), Positives = 70/244 (28%), Gaps = 73/244 (29%)
Query: 5 ASFTSMGALFDLPS---DHDVL------ARLKDAARKFLPDGWRDWTLVNSIDLEMEVDS 55
+ DLP + ++D W +W VN L ++S
Sbjct: 308 LKYLDCRP-QDLPREVLTTNPRRLSIIAESIRDG-----LATWDNWKHVNCDKLTTIIES 361
Query: 56 STLNKL-----RFALPTLEIVRAFDPSAN------CL-----KEYPYRDMKKKMLSWAFT 99
S LN L R L + F PSA+ L + + K+
Sbjct: 362 S-LNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK---- 413
Query: 100 RGLVLSPSAFSKQIRGSSHS-HDIVARAVAPLKSEFVSRETADRILSNIEKPASRSSS-- 156
LV KQ + S+ S I L++E I+ + P + S
Sbjct: 414 YSLVE------KQPKESTISIPSIYLELKVKLENE---YALHRSIVDHYNIPKTFDSDDL 464
Query: 157 -----------------VAMESTGEAA--RDLSLDDRF---KAHEEKMMGRINETINSLF 194
+E R + LD RF K + + +I +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 195 SRLQ 198
+L+
Sbjct: 525 QQLK 528
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 3e-10
Identities = 94/573 (16%), Positives = 176/573 (30%), Gaps = 169/573 (29%)
Query: 93 MLSWAFTRGLVLSPSAFSKQIRGSSHSHDIVARAVAPLKSEFV-SRETADRILSNIEKPA 151
M +++ TR L LS + + + S I ++ L+ +F + ++P
Sbjct: 1 MDAYS-TRPLTLSHGSLEHVLLVPTASFFIASQ----LQEQFNKILPEPTEGFAADDEPT 55
Query: 152 SRSSSVA---------MESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSELP 202
+ + V +E + D L+ E + + I++L ++L E
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--IHALAAKLLQEND 113
Query: 203 AFNREESSHSETEESEFPERDVSP-PPDSWEAPPLFDSPEE-----ITV-----SPDLPF 251
E ++ R ++ P D LF + E + + + D F
Sbjct: 114 T---TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 252 --------SFAPCVKE-----REPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEI 298
++ V + E L +A +Q L+ + W
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW------------ 218
Query: 299 QAGGIFARLQ-PN--PELD--------VPHNSLADLLACNDGAFGILCHGLILQRLALAD 347
L+ P+ P+ D P + L + + L L
Sbjct: 219 --------LENPSNTPDKDYLLSIPISCPLIGVIQL-----AHYVVTAKLLGFTPGELRS 265
Query: 348 TINMVVSKHPSVKSDLISAL-----SSKESMFKKTSDNLLQYV--CGKRA-EAIASRRKL 399
+ L++A+ S ES F + + + G R EA
Sbjct: 266 YLKGATG----HSQGLVTAVAIAETDSWES-FFVSVRKAITVLFFIGVRCYEAY------ 314
Query: 400 LEPAIRVPPRILKDI------PPS-------------EEYLFD-PKSLAEAMRAQSSSGK 439
P +PP IL+D PS ++Y+ L + S
Sbjct: 315 --PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLV 371
Query: 440 NGKQRI-----P-SIPSVNINVDMMSEPACKGKQH------RKIRGSS---------HSH 478
NG + + P S+ +N+ + P+ Q RK++ S+ HSH
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPS-GLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 479 DIVARAVAPLKSEFVSRETADRILSNIEKPASRSSSVAMEST--GEAARDLSLDDRFKAH 536
++ A + D + +N+ A + + T G R LS
Sbjct: 431 -LLVPASDLIN--------KDLVKNNVSFNAK-DIQIPVYDTFDGSDLRVLS-------- 472
Query: 537 EEKMMGRINETINSLFSRLQSELPAFNREESSH 569
G I+E I RL + + +++H
Sbjct: 473 -----GSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 60.4 bits (146), Expect = 3e-09
Identities = 82/569 (14%), Positives = 149/569 (26%), Gaps = 212/569 (37%)
Query: 467 QHRKIRGS---SHSHDIVARAVAPLKSEFV-SRETADRILSNIEKPASRSSSVA------ 516
H + + +A L+ +F + ++P + + V
Sbjct: 12 SHGSLEHVLLVPTASFFIASQ---LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 517 ---MESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPAFNREESSHSETE 573
+E + D L+ E + + I++L ++L E E
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--IHALAAKLLQENDT---TLVKTKELI 123
Query: 574 ESEFPERDVSP-PPDSWEAPPLFDSPEE-----ITV-----SPDLPF--------SFAPC 614
++ R ++ P D LF + E + + + D F ++
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 615 VKE-----REPDVPLPSPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARLQ-PN 668
V + E L +A +Q L+ + W L+ P+
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--------------------LENPS 223
Query: 669 --PELD--------VPHNSLADLLACNDGAFGILCHGLILQRLALADTINMVVSKHPSVK 718
P+ D P + L + + L L +
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQL-----AHYVVTAKLLGFTPGELRSYLKGATG----HS 274
Query: 719 SDLISAL-----SSKESMFKKTSDNLLQYV--CGKRA-EAIASRRKLLEPAIRVPPRILK 770
L++A+ S ES F + + + G R EA P +PP IL+
Sbjct: 275 QGLVTAVAIAETDSWES-FFVSVRKAITVLFFIGVRCYEAY--------PNTSLPPSILE 325
Query: 771 DI------PPS-------------EEYLFD---------------------------PKS 784
D PS ++Y+ P+S
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 785 LA------EAMRAQSSS-------SWKKAEVIMGFLSFASFVIPLG-----KLMFRHIQR 826
L +A S S +K + FL P+ L+
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL-------PVASPFHSHLLVPASDL 438
Query: 827 LSLRLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSGWGARVDN 886
++ L K+ + + + P V+ T D SD RV +
Sbjct: 439 INKDLVKNNVS-------------FNAKDIQIP---------VYDTFDGSD----LRVLS 472
Query: 887 RMIKGS-----------WTECQKKW--HI 902
I W + HI
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 58.1 bits (140), Expect = 2e-08
Identities = 99/590 (16%), Positives = 163/590 (27%), Gaps = 218/590 (36%)
Query: 394 ASRRKL------LEPAIRVPPRI------LKD-----IP-PSEEYLFD--PKSLAE-AMR 432
S R L LE + VP L++ +P P+E + D P + AE +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 433 -----AQSSSGKNGKQRIPSIPSV--NINVDMMSEPACKGKQHRKIRGSSHSHDIVARAV 485
+ Q + + + I H + A+ +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL--------EGNDI------HALAAKLL 109
Query: 486 APLKSEFVSRE-------TADRILSNIEKPASRSSSVAMESTGEAARDLSL-------DD 531
+ V + TA RI++ +S++ A+ +++ DD
Sbjct: 110 QENDTTLVKTKELIKNYITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 532 RFKAHEEKMMGRINET----INSLFSRLQSELPAFNREESSHSETEESEFPE-RDVSPPP 586
F EE + + +T + L L E + E F + ++
Sbjct: 169 YF---EE--LRDLYQTYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQGLNIL--- 216
Query: 587 DSW----EAPPLFDSPEEITVSPDLPFSFAP----------CVKEREPDVPLPSPE---A 629
W P ++ +S P S P V + +P +
Sbjct: 217 -EWLENPSNTP----DKDYLLSI--PISC-PLIGVIQLAHYVVTAKLLGF---TPGELRS 265
Query: 630 EAHGRS--SQKL---------DSVGWNRIKYMEAQKEIQAGGIF---ARLQPN-PELDVP 674
G + SQ L DS W ++ +K I +F R P +P
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDS--WESF-FVSVRKAITV--LFFIGVRCYEAYPNTSLP 320
Query: 675 HNSLADLLACNDGA----FGILCHGLIL-----------QRLALADTI---------NMV 710
+ L D L N+G I L L + N+V
Sbjct: 321 PSILEDSLENNEGVPSPMLSI--SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 711 VSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRK-------------- 756
VS P L + K L Q + S RK
Sbjct: 379 VSGPP---QSLYGLNLTLRKA--KAPSGLDQ------SRIPFSERKLKFSNRFLPVASPF 427
Query: 757 ---LLEPAIRVPPRILKDIPPSEEYLFDPKSLAEA---------MRAQSSS--------- 795
LL PA I KD+ + F+ K + +R S S
Sbjct: 428 HSHLLVPAS---DLINKDLVKNNV-SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 796 -----SWKKAEVIMGFLSF-ASFVI---P-----LGKLMFRHIQRLSLRL 831
W+ F A+ ++ P LG L R+ +R+
Sbjct: 484 IRLPVKWETT------TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Score = 57.8 bits (139), Expect = 2e-08
Identities = 65/394 (16%), Positives = 123/394 (31%), Gaps = 94/394 (23%)
Query: 11 GALFDLPSDH-DVLARLKDAARKFLPDGW--RDWTLVNSIDLEMEVDSSTLNKLRFALPT 67
G L ++ L R A K G +W L N D L + + P
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW-LENP---SNTPDKDYLLSIPISCPL 240
Query: 68 LEIVRAFDPSANCLKEYPYRDMKKKMLSWAFTRGLVLSPSAFSKQIRGSS-HSHDIV-AR 125
+ +++ A+ Y + L +P ++G++ HS +V A
Sbjct: 241 IGVIQL----AH------YV---------VTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 126 AVAPLKS--EFVSRETADRILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEK-- 181
A+A S F + + ++ + R E+ + S+ + + E
Sbjct: 282 AIAETDSWESFF--VSVRKAITVLFFIGVRCY----EAYPNTSLPPSILEDSLENNEGVP 335
Query: 182 --MMGRINETINSL-FSRLQSELPAFNREESSHSETEESEFPERD---VSPPPDSWEAPP 235
M+ I++L ++Q + N + + E S VS PP S
Sbjct: 336 SPMLS-----ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-- 388
Query: 236 LFDSPEEITVSPDL-----PFSFAPCVKEREPDV-----PLPSPEAEAHGRSSQKLDSVG 285
L + + L PFS ER+ P+ SP H S
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFS------ERKLKFSNRFLPVASPF---H--SH------- 430
Query: 286 WNRIKYME-AQKEIQAGGIFARLQPNP-ELDVP-HNSL--ADLLACNDGAFGILCHGLIL 340
+ A I + + N ++ +P +++ +DL + + +I
Sbjct: 431 -----LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 341 QRL----ALADTINMVVSKHPSVKSDLISALSSK 370
+ ++ P S L L+ +
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGL-GVLTHR 518
Score = 37.0 bits (85), Expect = 0.051
Identities = 54/310 (17%), Positives = 96/310 (30%), Gaps = 92/310 (29%)
Query: 159 ME--STGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQ------SELPAFNREESS 210
M+ T +AA+D+ +R H + G FS L L E
Sbjct: 1633 MDLYKTSKAAQDVW--NRADNHFKDTYG---------FSILDIVINNPVNLTIHFGGEKG 1681
Query: 211 HSETEESEFPERDVSPPPD-SWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPSP 269
E + D + +F E + S ++F R L +
Sbjct: 1682 KRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTS----YTF------RSEKGLLSAT 1729
Query: 270 EAEAHGRSSQ---KLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSL----AD 322
+ +Q L ++++ I A FA H SL A
Sbjct: 1730 Q------FTQPALTLMEKAAFED--LKSKGLIPADATFA----------GH-SLGEYAA- 1769
Query: 323 LLACNDGAFGI-----LCH--GLILQRLALADTINMVVSKHPSVKSDLISALSSKESMF- 374
LA I + G+ +Q D + ++ ++A S+E++
Sbjct: 1770 -LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 375 ------KKTS-------DNL--LQYVCGKRAEAIASRRKLLEPAIRVPPRI-LKDIPPS- 417
K+T N+ QYV A+ + +L I++ +I + ++ S
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN-FIKL-QKIDIIELQKSL 1886
Query: 418 -----EEYLF 422
E +LF
Sbjct: 1887 SLEEVEGHLF 1896
Score = 37.0 bits (85), Expect = 0.051
Identities = 54/310 (17%), Positives = 96/310 (30%), Gaps = 92/310 (29%)
Query: 517 ME--STGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQ------SELPAFNREESS 568
M+ T +AA+D+ +R H + G FS L L E
Sbjct: 1633 MDLYKTSKAAQDVW--NRADNHFKDTYG---------FSILDIVINNPVNLTIHFGGEKG 1681
Query: 569 HSETEESEFPERDVSPPPD-SWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPSP 627
E + D + +F E + S ++F R L +
Sbjct: 1682 KRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTS----YTF------RSEKGLLSAT 1729
Query: 628 EAEAHGRSSQ---KLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSL----AD 680
+ +Q L ++++ I A FA H SL A
Sbjct: 1730 Q------FTQPALTLMEKAAFED--LKSKGLIPADATFA----------GH-SLGEYAA- 1769
Query: 681 LLACNDGAFGI-----LCH--GLILQRLALADTINMVVSKHPSVKSDLISALSSKESMF- 732
LA I + G+ +Q D + ++ ++A S+E++
Sbjct: 1770 -LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 733 ------KKTS-------DNL--LQYVCGKRAEAIASRRKLLEPAIRVPPRI-LKDIPPS- 775
K+T N+ QYV A+ + +L I++ +I + ++ S
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN-FIKL-QKIDIIELQKSL 1886
Query: 776 -----EEYLF 780
E +LF
Sbjct: 1887 SLEEVEGHLF 1896
Score = 36.2 bits (83), Expect = 0.086
Identities = 45/304 (14%), Positives = 79/304 (25%), Gaps = 102/304 (33%)
Query: 222 RDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAEAH--GRSSQ 279
S A +++ + FS V P H G +
Sbjct: 1636 YKTSK-----AAQDVWNRADNHFKD-TYGFSILDIVIN-NP------VNLTIHFGGEKGK 1682
Query: 280 KLDSVGWNRIKYMEAQKEIQAGGIFARLQPNPELDVPHNSL-----------------AD 322
++ R Y E G + E++ S A
Sbjct: 1683 RI------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA- 1735
Query: 323 LLACNDGAFGILC-HGLILQR-------L----ALA---------DTINMV--------- 352
L AF L GLI L ALA + +V
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 353 -VSKHPSVKSDL-ISALSSKESMFKKTSDNLLQYVCGKRAEAIASR-RKLLEPA---IRV 406
V + +S+ + A+ + + S LQYV E + R L+E +
Sbjct: 1796 AVPRDELGRSNYGMIAI-NPGRVAASFSQEALQYVV----ERVGKRTGWLVEIVNYNV-- 1848
Query: 407 PPRILKDIPPSEEYLF--DPKSLAEAMRAQSSSGKNGKQRIPSIPSVNINVDMMSEPACK 464
+++Y+ D ++L + + I + + + E
Sbjct: 1849 ---------ENQQYVAAGDLRALDTVTNVLNFIK------LQKIDIIELQKSLSLEEV-- 1891
Query: 465 GKQH 468
+ H
Sbjct: 1892 -EGH 1894
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 33.8 bits (78), Expect = 0.11
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 27/146 (18%)
Query: 849 MRWWI----AALGTPSPIFRRRTQVFVTSDASDSGWGARV---DNRMIKGSWTECQKKWH 901
++ I + G P P +G+GA V D+ + + +
Sbjct: 2 VKVVIEADGGSRGNPGP----------------AGYGAVVWTADHSTVLAESKQAIGRAT 45
Query: 902 INVKELFAVQMSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSINLLRGVEEIFR-I 960
NV E + L+ + + D+ VV + + K +LL+ +
Sbjct: 46 NNVAEYRGLIAGLDDAVKL-GATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALA 104
Query: 961 ATVHNITVQAQYIPGMYNNIADSLSR 986
+ I + ++P N AD L+
Sbjct: 105 SQFRRINYE--WVPRARNTYADRLAN 128
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 33.5 bits (77), Expect = 0.46
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 227 PPDSWEAPPLFD-SPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAEAHGRSSQK 280
P+ + P LF+ + +E++ +P L P + P+ A ++
Sbjct: 350 LPNGRDTPALFNFTTQELSSNPPLATILIPPHARIQAAASTPTNATAASDANTGD 404
Score = 33.5 bits (77), Expect = 0.46
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 585 PPDSWEAPPLFD-SPEEITVSPDLPFSFAPCVKEREPDVPLPSPEAEAHGRSSQK 638
P+ + P LF+ + +E++ +P L P + P+ A ++
Sbjct: 350 LPNGRDTPALFNFTTQELSSNPPLATILIPPHARIQAAASTPTNATAASDANTGD 404
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse
transcriptase, transferase, replication; 3.00A {Moloney
murine leukemia virus} SCOP: e.8.1.2
Length = 455
Score = 33.1 bits (76), Expect = 0.64
Identities = 9/98 (9%), Positives = 30/98 (30%), Gaps = 12/98 (12%)
Query: 861 PIFRRRTQVFVTSDASDSGWGARVDNRMIKG---------SWTECQKKWHINVKELFAVQ 911
P + ++FV D + ++ W ++ + A+
Sbjct: 341 PDLTKPFELFV--DEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIA 398
Query: 912 MSLEKNLAYVQNKVVLIQSDNLTVVCYIQKQGGTKSIN 949
+ + + ++I++ + V +++ N
Sbjct: 399 VLTKDAGKLTMGQPLVIKAPH-AVEALVKQPPDRWLSN 435
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 29.4 bits (67), Expect = 3.5
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 903 NVKELFAVQMSLE--KNLAYVQNKV-VLIQSDNLTVVCYIQKQGG--TKSINLLRGVEEI 957
NV E A+ +LE + + V ++ D+ +V Q QG K L +I
Sbjct: 46 NVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVR--QMQGVYKVKEPTLKEKFAKI 103
Query: 958 FRIATVHNITVQAQYIPGMYNNIADSLSR 986
I + +IP N AD L
Sbjct: 104 AHIKMERVPNLVFVHIPREKNARADELVN 132
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 30.7 bits (70), Expect = 3.6
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 194 FSRLQSELPAFNREESSHSETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPD 248
F+ L + ++ + E P + P D+++ PP S + + VSP
Sbjct: 479 FNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVAVSPT 533
Score = 30.7 bits (70), Expect = 3.6
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 552 FSRLQSELPAFNREESSHSETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPD 606
F+ L + ++ + E P + P D+++ PP S + + VSP
Sbjct: 479 FNPETDFLTGKDGKKFKLEAPDADELPRAEFDPGQDTYQHPPKDSSGQRVAVSPT 533
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 30.3 bits (69), Expect = 3.7
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 737 DNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSSS 796
D +L R ++++ + V P +L D S K + A +A+ SS+
Sbjct: 369 DRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGD--ES----VPLKEIIAAAKAELSSA 422
Score = 29.9 bits (68), Expect = 5.7
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 379 DNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAMRAQSSS 437
D +L R ++++ + V P +L D S K + A +A+ SS
Sbjct: 369 DRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGD--ES----VPLKEIIAAAKAELSS 421
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 30.6 bits (70), Expect = 3.7
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 5/63 (7%)
Query: 835 PLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVF-VTSDASDSGWGARVDNRMIKGSW 893
P L + + + W A+ + R T +A W NR
Sbjct: 445 PSVLANMVLHSELHVDWVADAIAY---LDARGAAGIEGTPEAVAD-WVEECRNRAEASLL 500
Query: 894 TEC 896
Sbjct: 501 NSA 503
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 4.1
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 15/75 (20%)
Query: 137 RETADRILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSR 196
RE + L E A+ S V + E A+ L++ + E++ R
Sbjct: 91 REEQRKRLQ--ELDAA--SKVMEQEWREKAKK-DLEEWNQRQSEQVEKNKINN------R 139
Query: 197 LQSELPAF--NREES 209
+ + AF +
Sbjct: 140 IADK--AFYQQPDAD 152
Score = 29.7 bits (66), Expect = 4.1
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 15/75 (20%)
Query: 495 RETADRILSNIEKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSR 554
RE + L E A+ S V + E A+ L++ + E++ R
Sbjct: 91 REEQRKRLQ--ELDAA--SKVMEQEWREKAKK-DLEEWNQRQSEQVEKNKINN------R 139
Query: 555 LQSELPAF--NREES 567
+ + AF +
Sbjct: 140 IADK--AFYQQPDAD 152
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 30.1 bits (68), Expect = 4.6
Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 5/160 (3%)
Query: 148 EKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPAFNRE 207
K + ++ ++ EA + D + E+ + + Q E
Sbjct: 45 VKASEQAVEEQPQAHTEAEAETFAADVVEVTEQ--VAESEKAQPEAEVVAQPEPVVEETP 102
Query: 208 ESSHSETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLP 267
E E EE PE + E ++ E + + + A E
Sbjct: 103 EPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVEAAEEEA---AKEEITDEELETAL 159
Query: 268 SPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARL 307
+ EA + + Q++ G FARL
Sbjct: 160 AAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARL 199
Score = 30.1 bits (68), Expect = 4.6
Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 5/160 (3%)
Query: 506 EKPASRSSSVAMESTGEAARDLSLDDRFKAHEEKMMGRINETINSLFSRLQSELPAFNRE 565
K + ++ ++ EA + D + E+ + + Q E
Sbjct: 45 VKASEQAVEEQPQAHTEAEAETFAADVVEVTEQ--VAESEKAQPEAEVVAQPEPVVEETP 102
Query: 566 ESSHSETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLP 625
E E EE PE + E ++ E + + + A E
Sbjct: 103 EPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVEAAEEEA---AKEEITDEELETAL 159
Query: 626 SPEAEAHGRSSQKLDSVGWNRIKYMEAQKEIQAGGIFARL 665
+ EA + + Q++ G FARL
Sbjct: 160 AAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARL 199
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 30.3 bits (67), Expect = 5.4
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 208 ESSHSETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLP 267
E+ + + EE+ PE + S E + + +++ E
Sbjct: 15 ENLYFQGEETAVPENSGANTELVSGESE--HSTNEADKQNEGEHARENKLEKAEGVATAS 72
Query: 268 SPEAEAHGRSSQK 280
+ A ++
Sbjct: 73 ETASPASNEAATT 85
Score = 30.3 bits (67), Expect = 5.4
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 566 ESSHSETEESEFPERDVSPPPDSWEAPPLFDSPEEITVSPDLPFSFAPCVKEREPDVPLP 625
E+ + + EE+ PE + S E + + +++ E
Sbjct: 15 ENLYFQGEETAVPENSGANTELVSGESE--HSTNEADKQNEGEHARENKLEKAEGVATAS 72
Query: 626 SPEAEAHGRSSQK 638
+ A ++
Sbjct: 73 ETASPASNEAATT 85
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria
isoprenoid biosynthesis and prenylation pathways ISPF;
2.26A {Plasmodium vivax sai-1}
Length = 187
Score = 28.9 bits (65), Expect = 7.9
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 944 GTKSINLLRGVEEIFRIA--TVHNI--TVQAQ------YIPGMYNNIADSL--SRSQV 989
S++ LR + + N+ V A+ + NI+ +L S SQV
Sbjct: 98 NKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVPKISPIREEIVRNISSALGISESQV 155
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin
ring complex, gamma-TURC, struc protein; 2.30A {Homo
sapiens}
Length = 677
Score = 29.2 bits (64), Expect = 8.9
Identities = 13/172 (7%), Positives = 53/172 (30%), Gaps = 14/172 (8%)
Query: 767 RILKDIPPSEEYLFDPKSLAEAMRAQSSSSWKKAEVIMGF-LSFA-----SFVI-PLGKL 819
+ I + D E ++S A LS+ + P
Sbjct: 413 LLHLTIEYHGKEHKDATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLE 472
Query: 820 MFRHIQRLSLRLKKDPLKLCKIPPMALSQMRWWIAALGTPSPIFRRRTQVFVTSDASDSG 879
+ + + L +++ +L + + + R V +
Sbjct: 473 KYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWRLRNHMAFLVDN------ 526
Query: 880 WGARVDNRMIKGSWTECQKKWHINVKELFAVQMSLEKNLAYVQNKVVLIQSD 931
+ +++ +++ + + + ++ +++++ + L+ + + ++
Sbjct: 527 LQYYLQVDVLESQFSQLLHQIN-STRDFESIRLAHDHFLSNLLAQSFILLKP 577
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 29.1 bits (66), Expect = 9.0
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 838 LCKIPPMALSQMRWWIAALGTPSPIFRRRTQVF-VTSDASDSGWGARVDNRMIKGSWTEC 896
+PP +Q+ W +G R + T +A W +T+
Sbjct: 434 FTNLPPSIETQVEWISDTIGY---AERNGVRAIEPTPEAEAE-WTETCTEIANATLFTKG 489
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Streptomyces coelicolor}
Length = 405
Score = 29.0 bits (65), Expect = 9.9
Identities = 2/55 (3%), Positives = 12/55 (21%), Gaps = 10/55 (18%)
Query: 965 NITVQAQYIPGMYNNIADSLSRSQVLPDWHLLPHLTSWIFQNWGRPVIDLFASAG 1019
+ ++ + ++ ++ D + + G
Sbjct: 39 GVKIKNLVNGDDLAQVYETSRLARKEAD----------VVMVNLYDKTLAWTDVG 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,750,138
Number of extensions: 1102753
Number of successful extensions: 2220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2200
Number of HSP's successfully gapped: 51
Length of query: 1144
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1040
Effective length of database: 3,798,009
Effective search space: 3949929360
Effective search space used: 3949929360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)